Query gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs 111 out of 3172
Neff 6.1
Searched_HMMs 33803
Date Wed Jun 1 12:02:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780297.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1rl4_A Formylmethionine defor 100.0 0 0 386.1 5.7 169 1-169 6-175 (188)
2 >1lme_A PDF, peptide deformyla 100.0 0 0 384.0 3.6 164 1-169 11-174 (176)
3 >3cpm_A Peptide deformylase, c 100.0 0 0 380.2 4.7 158 1-158 14-171 (172)
4 >1y6h_A Peptide deformylase; o 100.0 0 0 377.2 0.8 167 2-168 1-175 (177)
5 >1zxz_A PDF, peptide deformyla 100.0 0 0 380.7 -3.8 169 1-169 1-186 (197)
6 >1ws0_A Peptide deformylase 1; 100.0 0 0 371.6 0.9 155 1-159 1-155 (156)
7 >3g5k_A Peptide deformylase, m 100.0 0 0 369.6 1.5 154 1-154 2-172 (183)
8 >3dld_A Peptide deformylase; b 100.0 0 0 373.5 -2.1 163 2-164 1-169 (171)
9 >2okl_A Peptide deformylase 2; 100.0 0 0 377.8 -6.1 167 1-167 3-185 (185)
10 >2os0_A Peptide deformylase; P 100.0 0 0 371.4 -3.6 165 1-165 2-186 (188)
11 >2aia_A Peptide deformylase; h 100.0 0 0 370.4 -4.1 165 1-165 14-202 (203)
12 >1lm4_A Peptide deformylase PD 100.0 0 0 366.0 -2.0 164 1-164 13-193 (194)
13 >1n5n_A Peptide deformylase; m 100.0 0 0 354.7 4.4 145 1-147 13-157 (157)
14 >2ew5_A Peptide deformylase; i 100.0 0 0 349.5 4.2 145 2-147 1-148 (148)
15 >1xeo_A Peptide deformylase; c 100.0 0 0 345.4 4.6 143 2-147 1-143 (143)
16 >2w3t_A Peptide deformylase; p 100.0 0 0 345.4 4.3 143 2-147 1-143 (143)
17 >3e3u_A Peptide deformylase; m 100.0 0 0 340.4 6.0 151 17-167 1-158 (159)
18 >1v3y_A Peptide deformylase; p 100.0 0 0 332.3 3.0 144 2-147 1-156 (156)
19 >2rjg_A Alanine racemase; alph 24.8 51 0.0015 14.6 2.6 37 46-82 100-139 (167)
20 >2bkf_A Zinc-finger protein NB 23.3 48 0.0014 14.8 2.0 38 91-128 24-64 (87)
21 >3g0t_A Putative aminotransfer 21.4 20 0.0006 17.1 -0.3 17 46-62 1-17 (77)
22 >2uxq_A Isocitrate dehydrogena 21.4 57 0.0017 14.3 2.0 29 102-130 6-34 (44)
23 >1hn0_A Chondroitin ABC lyase 21.2 45 0.0013 15.0 1.5 66 74-139 86-162 (241)
No 1
>>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide deformylase, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum 3D7} (A:)
Probab=100.00 E-value=0 Score=386.13 Aligned_cols=169 Identities=31% Similarity=0.600 Sum_probs=162.2
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-CCCCCEECCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323-34821001644
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPK 79 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-~~~~~~~iNP~ 79 (170)
|++++|++||||+||++|.||+.++++++++++||++||++++|+||||||||+++|+|+|++++... ...+.+||||+
T Consensus 6 m~~~~I~~~~d~~Lr~~a~~V~~~~~~~~~li~dM~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~v~INP~ 85 (188)
T 1rl4_A 6 KDEIKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPS 85 (188)
T ss_dssp ----CCCCTTCGGGGSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEE
T ss_pred CCCCCEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHEEECCCCCCCCCCEEEEEECCC
T ss_conf 88862766899799742711898998999999999999855366553234425132203533563322220147862144
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHH
Q ss_conf 20100000111000001223210121100000246323585579997297646432700131976853647889999999
Q gi|254780297|r 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 (170)
Q Consensus 80 I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~ 159 (170)
|++.|+++..+||||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+||+||+++.++..+.
T Consensus 86 I~~~s~e~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Drl~~~~~~~~~ 165 (188)
T 1rl4_A 86 IVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVR 165 (188)
T ss_dssp EEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECEEEEEEEHHHHHCCEEEHHHCCHHHHHHHH
T ss_conf 33332057765125455798653322344545555322221122689502224325054876888404517999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999998504
Q gi|254780297|r 160 KKMSKLVQLR 169 (170)
Q Consensus 160 ~k~~k~~k~k 169 (170)
++++++.+.+
T Consensus 166 ~~~~~~~~~~ 175 (188)
T 1rl4_A 166 PKLNELIRDY 175 (188)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
T ss_conf 9999999988
No 2
>>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:)
Probab=100.00 E-value=0 Score=383.95 Aligned_cols=164 Identities=35% Similarity=0.625 Sum_probs=159.5
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
||+++|++||||+||++|.||+.++++++++++||++||++++|+||||||||+++|+|+++.+++ +++||||+|
T Consensus 11 m~i~~Iv~~~d~~Lr~~~~~V~~~~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-----~~~lINP~I 85 (176)
T 1lme_A 11 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNG-----PVAVINPEI 85 (176)
T ss_dssp CSSCCCCCTTCGGGTSCCBCCCBCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSSC-----CEEEEEEEE
T ss_pred CCEEEEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCC-----EEEEECCCC
T ss_conf 617872177996982706358988989999999999999859980973235786412999817998-----589989812
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHH
Q ss_conf 01000001110000012232101211000002463235855799972976464327001319768536478899999999
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~ 160 (170)
++.|++...+||||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|++|+||+++.++..+.+
T Consensus 86 ~~~s~~~~~~~EgClS~Pg~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Drl~~~~~~~~~~ 165 (176)
T 1lme_A 86 LEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRK 165 (176)
T ss_dssp EEECSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC--------
T ss_pred CCCCCCEEEECCCCCCCCCCCCCEEECCEEEEEEECCCCCEEEEEEECCEEEEEEEHHHHHCCEEEHHCCCHHHHHHHHH
T ss_conf 26787489814665566994762772132799675589939999996254678788438768973012159878899999
Q ss_pred HHHHHHHHC
Q ss_conf 999998504
Q gi|254780297|r 161 KMSKLVQLR 169 (170)
Q Consensus 161 k~~k~~k~k 169 (170)
+++|++|.+
T Consensus 166 ~~~~~~~~~ 174 (176)
T 1lme_A 166 KLMDIARTV 174 (176)
T ss_dssp ---------
T ss_pred HHHHHHHHH
T ss_conf 999999886
No 3
>>3cpm_A Peptide deformylase, chloroplast; alpha beta, hydrolase, iron, metal-binding, plastid, protein biosynthesis, transit peptide; 2.40A {Arabidopsis thaliana} (A:1-172)
Probab=100.00 E-value=0 Score=380.21 Aligned_cols=158 Identities=37% Similarity=0.627 Sum_probs=154.6
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
|++++|++||||+|+++|.||+.++++++++++||++||++++|+||||||||+++|+|+++.+++.+...+.+||||+|
T Consensus 14 m~i~~Iv~~~d~~L~~~a~~V~~~~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I 93 (172)
T 3cpm_A 14 ETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKI 93 (172)
T ss_dssp CSSCCCCCTTCGGGTSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSCSTTSSCCEEEEEEEE
T ss_pred CCCCCEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 35641767899799762731687998999999999999987286674552664102234323012332111221235444
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHH
Q ss_conf 010000011100000122321012110000024632358557999729764643270013197685364788999999
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~ 158 (170)
++.|+++..+||||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||||+||+||+++.+++++
T Consensus 94 ~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G~l~~Drl~~~~~~~~ 171 (172)
T 3cpm_A 94 KKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSI 171 (172)
T ss_dssp EEECSSEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCEECCCCEEEEEEECCCCCEEEEEEECCEEEEEEEHHHHCCCEEHHHHCCHHHHHHH
T ss_conf 357876787246655566422100010016887641479678899814635678874351378737885598899999
No 4
>>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} (A:)
Probab=100.00 E-value=0 Score=377.22 Aligned_cols=167 Identities=33% Similarity=0.555 Sum_probs=157.8
Q ss_pred CCCCHHHCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCC-----CCCC
Q ss_conf 8773645769310521213787---8889999999999865004764213022014400037731643233-----4821
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-----KNPM 73 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~---~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~-----~~~~ 73 (170)
|+++|++||||+||++|+||+. +++++++++++|.+||++++|+||||||||+++|+|+++.++.... ..+.
T Consensus 1 ai~~I~~~~dp~Lr~~~~~V~~~d~~~~~i~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~~ 80 (177)
T 1y6h_A 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER 80 (177)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCGGGTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCE
T ss_pred CCCCHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf 95722028987996137007831248899999999999999872754520033101152899724755456666543304
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHH
Q ss_conf 00164420100000111000001223210121100000246323585579997297646432700131976853647889
Q gi|254780297|r 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 (170)
Q Consensus 74 ~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~ 153 (170)
+||||+|++.|+++..++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|++|+||+++.
T Consensus 81 vliNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G~l~~Drl~~~ 160 (177)
T 1y6h_A 81 IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT 160 (177)
T ss_dssp EEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCT
T ss_pred EECCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEEEECCHHHHCCCEEECHHHHHHHHHHHHHHCCCCCHHHCCHH
T ss_conf 64041898732515787205777798302432340123575665440554186738899999978972899006622843
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999850
Q gi|254780297|r 154 KRDMITKKMSKLVQL 168 (170)
Q Consensus 154 kr~~~~~k~~k~~k~ 168 (170)
++..+.++++++.+.
T Consensus 161 ~~~~~~~~~~~~~~~ 175 (177)
T 1y6h_A 161 KLFGFNETLDSSHNV 175 (177)
T ss_dssp TSEEEHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 366789999987751
No 5
>>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A (A:)
Probab=100.00 E-value=0 Score=380.68 Aligned_cols=169 Identities=31% Similarity=0.452 Sum_probs=157.2
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC---------
Q ss_conf 98773645769310521213787---888999999999986500476421302201440003773164323---------
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--------- 68 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~---~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~--------- 68 (170)
|++++|++||||+||++|+||+. +++++++++++|++||++++||||||||||+++|+|||++++...
T Consensus 1 M~i~~Iv~~~~p~Lr~~~~pV~~~~~~~~~~~~li~~M~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~ 80 (197)
T 1zxz_A 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEIL 80 (197)
T ss_dssp -CCCCCCCTTSGGGTSCCBCCCTTTTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHH
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHH
T ss_conf 97054141899788356732796567879999999999999987587550100553327799998774224558502222
Q ss_pred -----CCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf -----348210016442010000011100000122321012110000024632358557999729764643270013197
Q gi|254780297|r 69 -----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 69 -----~~~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
...+.++|||+|++.|+++..+||||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|
T Consensus 81 ~~~~~~~~~~vlINP~i~~~s~~~~~~~EGCLSvp~~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G 160 (197)
T 1zxz_A 81 AQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDG 160 (197)
T ss_dssp HTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCEEEECCEEEEECCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 21014667569878704860684776035665555754320023666889832789639999802101224058572288
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 68536478899999999999998504
Q gi|254780297|r 144 ILFIDHLSRLKRDMITKKMSKLVQLR 169 (170)
Q Consensus 144 ~lf~drls~~kr~~~~~k~~k~~k~k 169 (170)
++|+||+++.++..+.++++++.+.+
T Consensus 161 ~lf~Drl~~~~~~~~~~~~~~~~~~~ 186 (197)
T 1zxz_A 161 NLYVDKMVPRTFRTVDNLDLPLAEGC 186 (197)
T ss_dssp CCGGGTBCTTCCEEGGGTTSCCCTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 88565029889999998888776269
No 6
>>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A* (A:)
Probab=100.00 E-value=0 Score=371.58 Aligned_cols=155 Identities=32% Similarity=0.588 Sum_probs=147.0
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
|++++|++||||+||++|.||+.++++++++++||++||++++|+||||||||+++|+|+++.+++. .+.++|||+|
T Consensus 1 M~i~~Iv~~~d~~Lr~~a~~V~~~~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~---~~~v~INP~I 77 (156)
T 1ws0_A 1 MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDDDT---GKIELINPSI 77 (156)
T ss_dssp CCCCCCCCSSCGGGGSCCBCCCCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTT---CEEEEEEEEE
T ss_pred CCCCEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCC---CCCCCCCCCC
T ss_conf 9974104598969968072178789899999999999886337734225212144544102112345---7544458754
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHH
Q ss_conf 0100000111000001223210121100000246323585579997297646432700131976853647889999999
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~ 159 (170)
++.|+++ .++|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||||+||+||+++.+++...
T Consensus 78 ~~~s~~~-~~~EgClS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~l~~Dr~~~~~~~~~~ 155 (156)
T 1ws0_A 78 LEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENEL 155 (156)
T ss_dssp EEEEEEE-EEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTEEEECC----
T ss_pred CCCCCCC-CCCCCCCCCCCCEEEEECCHHHHHHHHCCCCEEEEEEECCCEEHHHHHHHHHHCCEEHHHHCCHHHHHHHC
T ss_conf 2345762-34344456899421232103555554025552799997475121341576874899579962534447652
No 7
>>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal- binding, mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A (A:)
Probab=100.00 E-value=0 Score=369.59 Aligned_cols=154 Identities=29% Similarity=0.510 Sum_probs=144.9
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC---------
Q ss_conf 987736457693105212137878---88999999999986500476421302201440003773164323---------
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--------- 68 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~---~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~--------- 68 (170)
|++++|++||||+||++|+||+.+ ++++++++++|++||++++||||||||||+++|+|++++++...
T Consensus 2 M~i~~Iv~~g~pvLr~~a~~V~~~~~~~~~i~~li~~M~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~ 81 (183)
T 3g5k_A 2 MSFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRA 81 (183)
T ss_dssp CCCCCCCCTTCGGGTSCCBCCCGGGTTCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 88121141198799464624876677889999999999999876588524313662310089997265444336400123
Q ss_pred -----CCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf -----348210016442010000011100000122321012110000024632358557999729764643270013197
Q gi|254780297|r 69 -----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 69 -----~~~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
...+.+||||+|++.|+++..++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||||||+|||+|
T Consensus 82 ~~~~~~~~~~v~iNP~I~~~s~~~~~~~EGClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G 161 (183)
T 3g5k_A 82 LRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQG 161 (183)
T ss_dssp HHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTEEEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEECCEEEEEECCCCEEEECCCCCCCCCCEECCCCCEEEEEEEECCCCEEEEEECCCEEEHHHHHHHHHCC
T ss_conf 22246765145255099995266303410243324633012631207888875156256899812044012036384189
Q ss_pred EEEEEECCHHH
Q ss_conf 68536478899
Q gi|254780297|r 144 ILFIDHLSRLK 154 (170)
Q Consensus 144 ~lf~drls~~k 154 (170)
++|+||+++..
T Consensus 162 ~l~~Drl~~~~ 172 (183)
T 3g5k_A 162 CLFIDKMDSRT 172 (183)
T ss_dssp CCGGGTSCGGG
T ss_pred EEEEEECCCCC
T ss_conf 88898528552
No 8
>>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} (A:)
Probab=100.00 E-value=0 Score=373.52 Aligned_cols=163 Identities=28% Similarity=0.414 Sum_probs=152.2
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCC-----CCCCEE
Q ss_conf 87736457693105212137878-889999999999865004764213022014400037731643233-----482100
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-----KNPMVF 75 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~-~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~-----~~~~~~ 75 (170)
|+++|++||||+||++|.||+.+ ++++++++++|.+||++++|+||||||||+++|+|+++.++.... ..+++|
T Consensus 1 M~~~Iv~~~~~~Lr~~a~~V~~~~~~e~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~~vl 80 (171)
T 3dld_A 1 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL 80 (171)
T ss_dssp CCCCCCCTTCGGGGSCCCCCCCTTCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCSSSCSCCCEEEEEE
T ss_pred CCCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 97622118998993767667888988999999999999976899067588809762269985241014555555553010
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHH
Q ss_conf 16442010000011100000122321012110000024632358557999729764643270013197685364788999
Q gi|254780297|r 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 (170)
Q Consensus 76 iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr 155 (170)
|||+|++.|+++..+||||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|++|+||+++.++
T Consensus 81 iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 160 (171)
T 3dld_A 81 ANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDT 160 (171)
T ss_dssp EEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCSCGGG
T ss_pred CCCEEEECCCCCEECCCCCCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHCCEEHHHHCCCCCC
T ss_conf 15343103675046147865679974556642753799995889999999544121244047474188814885685653
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780297|r 156 DMITKKMSK 164 (170)
Q Consensus 156 ~~~~~k~~k 164 (170)
..+.++++|
T Consensus 161 ~~~~~~~~~ 169 (171)
T 3dld_A 161 FGFDDVLSY 169 (171)
T ss_dssp CEETTTCCC
T ss_pred CCCHHHHCC
T ss_conf 344555336
No 9
>>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus atcc 14579} PDB: 1lqy_A* (A:)
Probab=100.00 E-value=0 Score=377.77 Aligned_cols=167 Identities=32% Similarity=0.416 Sum_probs=154.0
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCC-------------CHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 987736457693105212137878-------------8899999999998650047642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKI-------------NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~-------------~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|++||||+||++|+||+.+ ++++.+++++|.+||++++|+||||||||+++|+|+|+.++..
T Consensus 3 M~v~~I~~~~~~~Lr~~s~~V~~~~~~~~~~~~~~~~~~~i~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~ 82 (185)
T 2okl_A 3 LTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDAD 82 (185)
T ss_dssp CCGGGCCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTT
T ss_pred CCCCCHHHCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEECC
T ss_conf 63210401799799175700688862566689999999998757899999997568866444268765208999963021
Q ss_pred CCCCCCEECCCCCCCHHHHHHH--HHHHCCCCCC-CCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCE
Q ss_conf 3348210016442010000011--1000001223-210121100000246323585579997297646432700131976
Q gi|254780297|r 68 HRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 (170)
Q Consensus 68 ~~~~~~~~iNP~I~~~s~e~~~--~~EGCLS~Pg-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~ 144 (170)
....+.++|||+|++.|+++.. .+|||||+|| +++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+
T Consensus 83 ~~~~~~v~INP~i~~~s~e~~~~~~~EGClS~pg~~~~~V~R~~~I~v~y~d~~g~~~~~~~~G~~Ar~~QHEiDHL~G~ 162 (185)
T 2okl_A 83 GTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGV 162 (185)
T ss_dssp CCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSCCCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEHHHHHCCE
T ss_conf 22322321021232036650233023577576644232136655599999758996999999601157757433864888
Q ss_pred EEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 85364788999999999999985
Q gi|254780297|r 145 LFIDHLSRLKRDMITKKMSKLVQ 167 (170)
Q Consensus 145 lf~drls~~kr~~~~~k~~k~~k 167 (170)
+|+||+++.++..+.++++++.|
T Consensus 163 l~~Dr~~~~~~~~~~~~~~~~~k 185 (185)
T 2okl_A 163 MFYDHINKENPFAAPDDSKPLER 185 (185)
T ss_dssp CGGGGSCSSCTTCCCSSEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHHHCC
T ss_conf 11100480143353677786359
No 10
>>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A (A:)
Probab=100.00 E-value=0 Score=371.44 Aligned_cols=165 Identities=28% Similarity=0.441 Sum_probs=151.5
Q ss_pred CCCCCHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC------------CCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 9877364576931052121378-78889999999999865004------------7642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~-~~~~~~~~li~dm~~tm~~~------------~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|++||||+||++|++|+ .+++++++++++|++||+++ +||||||||||+++|+||++.++..
T Consensus 2 M~i~~I~~~~~p~Lr~~a~~V~~~~~~~~~~~~~~M~~tm~~~~~~~~~~~~~~~~gvGLAApQIG~~~ri~vi~~~~~~ 81 (188)
T 2os0_A 2 ITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSND 81 (188)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC--
T ss_pred CCCCHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHEEHEEEEEECCCCC
T ss_conf 88313533899799483841898889899999999999999835334455421368720120533300002457547221
Q ss_pred CC----CCCCEECCCCCCCHHHHHH--HHHHHCCCCC-CCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHH
Q ss_conf 33----4821001644201000001--1100000122-321012110000024632358557999729764643270013
Q gi|254780297|r 68 HR----KNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 (170)
Q Consensus 68 ~~----~~~~~~iNP~I~~~s~e~~--~~~EGCLS~P-g~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDH 140 (170)
.. ..+.++|||+|++.|.++. ..+|||||+| |+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+||
T Consensus 82 ~~~~~~~~~~v~INP~I~~~s~~~~~~~~~EgClS~p~~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDH 161 (188)
T 2os0_A 82 PENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDH 161 (188)
T ss_dssp -------EEEEEEEEEEEEECSCEEEETTCCCCTTCCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECEEEEEEEHHHH
T ss_conf 34435565335405532244432101110245546664552110110079999965788656799973447888880265
Q ss_pred HCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 1976853647889999999999999
Q gi|254780297|r 141 LNGILFIDHLSRLKRDMITKKMSKL 165 (170)
Q Consensus 141 L~G~lf~drls~~kr~~~~~k~~k~ 165 (170)
|+|+||+||+++.++..++++++++
T Consensus 162 L~G~l~~Drl~~~~~~~~~~~~~~~ 186 (188)
T 2os0_A 162 INGIMFYDHINKENPFALKEGVLVI 186 (188)
T ss_dssp HTTCCGGGGSCSSSTTCCCTTCEEE
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 0889766333800256786422401
No 11
>>2aia_A Peptide deformylase; hydrolase; HET: SB8; 1.70A {Streptococcus pneumoniae} PDB: 2ai7_A* 2aie_P* 1lm6_A 2os3_A* (A:)
Probab=100.00 E-value=0 Score=370.42 Aligned_cols=165 Identities=28% Similarity=0.387 Sum_probs=149.1
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-------------HHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 9877364576931052121378788899999999-------------998650047642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~d-------------m~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|++||||+||++|+||+.+++++.+++.+ |++||++++||||||||||+++|+||++.++..
T Consensus 14 m~~~~I~~~~~p~Lr~~a~~V~~~~~~~~~~~~~~l~~~~~~~~~~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~ 93 (203)
T 2aia_A 14 IDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIV 93 (203)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEEC--
T ss_pred CCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEECCEEEEEEEEEEEECCCCH
T ss_conf 75867743799799377840588875788887899999999610377999998667852141153010249999846605
Q ss_pred CC--------CCCCEECCCCCCCHHHHH--HHHHHHCCCCC-CCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEE
Q ss_conf 33--------482100164420100000--11100000122-32101211000002463235855799972976464327
Q gi|254780297|r 68 HR--------KNPMVFINPKIITFSDDF--SVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 (170)
Q Consensus 68 ~~--------~~~~~~iNP~I~~~s~e~--~~~~EGCLS~P-g~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 136 (170)
.. ..+.+||||+|++.|.++ ..++|||||+| |+++.|.||.+|+|+|+|++|++++.+++||+|||+||
T Consensus 94 ~~~~~~~~~~~~~~v~INP~i~~~s~~~~~~~~~EGCLS~p~~~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QH 173 (203)
T 2aia_A 94 EEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQH 173 (203)
T ss_dssp --------CEEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESCEEEEEECTTSCEEEEEECHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCEEECCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHEEEEEECCCCCEEEEEECCHHHHHHHH
T ss_conf 42022233456552453143101003313553035774667554211100100002563554560489971566777857
Q ss_pred EHHHHCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 00131976853647889999999999999
Q gi|254780297|r 137 ELDHLNGILFIDHLSRLKRDMITKKMSKL 165 (170)
Q Consensus 137 EiDHL~G~lf~drls~~kr~~~~~k~~k~ 165 (170)
|+|||+|++|+||+++.++..+.++++|+
T Consensus 174 EiDHL~G~l~~Dr~~~~~~~~~~~~~~~l 202 (203)
T 2aia_A 174 EIDHINGIMFYDRINEKDPFAVKDGLLIL 202 (203)
T ss_dssp HHHHHTTCCGGGGBCSSCTTCCCTTEEEE
T ss_pred HHHHHCCEEEHHHCCCCCHHHHHHHHHHC
T ss_conf 86830887204414834546788777642
No 12
>>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} (A:)
Probab=100.00 E-value=0 Score=365.99 Aligned_cols=164 Identities=27% Similarity=0.399 Sum_probs=149.7
Q ss_pred CCCCCHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHH------------CCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 9877364576931052121378-7888999999999986500------------47642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYS------------TDGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~-~~~~~~~~li~dm~~tm~~------------~~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|++||||+||++|.||+ .+++++++++++|.+||++ .+||||||||||+++|+|+++.+++.
T Consensus 13 m~i~~Iv~~~~p~Lr~~a~~V~~~~~~e~~~li~~m~~tm~~~~~~~~~~~~~~~~gvGLAApQIG~~~ri~vi~~~~~~ 92 (194)
T 1lm4_A 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDG 92 (194)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCS
T ss_pred CCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHEEEEECCCCC
T ss_conf 07723541899799267723788889899999999999999856667776425689869860214844626665158654
Q ss_pred CC-CCCCEECCCCCCCHHHHH--HHHHHHCCCCCC-CCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf 33-482100164420100000--111000001223-21012110000024632358557999729764643270013197
Q gi|254780297|r 68 HR-KNPMVFINPKIITFSDDF--SVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 68 ~~-~~~~~~iNP~I~~~s~e~--~~~~EGCLS~Pg-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
.. ..+.+||||+|++.|.++ ..++|||||+|| +++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|
T Consensus 93 ~~~~~~~~lINP~I~~~s~e~~~~~~~EGClS~Pg~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 172 (194)
T 1lm4_A 93 SGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG 172 (194)
T ss_dssp SSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 43445301228712430442210124667405533346634754849999995899999999776320567378682088
Q ss_pred EEEEEECCHHHHHHHHHHHHH
Q ss_conf 685364788999999999999
Q gi|254780297|r 144 ILFIDHLSRLKRDMITKKMSK 164 (170)
Q Consensus 144 ~lf~drls~~kr~~~~~k~~k 164 (170)
++|+||+++.++..+.++++|
T Consensus 173 ~l~~Dr~~~~~~~~~~~~~~~ 193 (194)
T 1lm4_A 173 VMFYDHIDKNHPLQPHTDAVE 193 (194)
T ss_dssp CCGGGGCCSSSTTCCCTTCEE
T ss_pred EEEEEECCCCCCCCCCCCCCC
T ss_conf 876871386566747756002
No 13
>>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} (A:1-157)
Probab=100.00 E-value=0 Score=354.73 Aligned_cols=145 Identities=43% Similarity=0.803 Sum_probs=140.3
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
|++++|++||||+||++|.||+.+++++++++++|++||++++|+||||||||+++|+|+++++++. ..+.+||||+|
T Consensus 13 m~i~~I~~~g~~~Lr~~a~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~--~~~~v~iNP~I 90 (157)
T 1n5n_A 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEF 90 (157)
T ss_dssp CCCCCCCCTTCGGGGCBCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECSTTS--CCEEEEEEEEE
T ss_pred CCCCCCCCCCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEEEECCCCC--CCCEEEECCEE
T ss_conf 5334426189969948051489699899999999999998789938556457952043776147555--87259889864
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEE
Q ss_conf 0100000111000001223210121100000246323585579997297646432700131976853
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~ 147 (170)
++.|+++..++|||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||+|||+|||+|+||+
T Consensus 91 ~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~lfi 157 (157)
T 1n5n_A 91 EPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFV 157 (157)
T ss_dssp EESCSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHBTCCGG
T ss_pred ECCCCCEEEECCCCCCCCCCCEEEECCHHEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHCCEEHH
T ss_conf 1368858873156667889824578724579989847997999998003446897887863999214
No 14
>>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A (A:1-148)
Probab=100.00 E-value=0 Score=349.54 Aligned_cols=145 Identities=34% Similarity=0.703 Sum_probs=137.9
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC---CCCCCEECCC
Q ss_conf 8773645769310521213787888999999999986500476421302201440003773164323---3482100164
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---RKNPMVFINP 78 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~---~~~~~~~iNP 78 (170)
|+++|++||||+||++|+||+.++++++++++||++||++++|+||||||||+++|+|+++.++... ...+.+||||
T Consensus 1 av~~Iv~~~d~~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQiG~~~ri~vi~~~~~~~~~~~~~~~~~iNP 80 (148)
T 2ew5_A 1 ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP 80 (148)
T ss_dssp CCCCCCCTTCGGGGCCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTTSCCCGGGCEEEEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEEEEEECCCCCCCCCCCCEEEECCC
T ss_conf 95141027985997848137888989999999999987421654610041002310688861554565334420320386
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEE
Q ss_conf 420100000111000001223210121100000246323585579997297646432700131976853
Q gi|254780297|r 79 KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 (170)
Q Consensus 79 ~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~ 147 (170)
+|++.|++. .+||||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+
T Consensus 81 ~i~~~s~~~-~~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~ 148 (148)
T 2ew5_A 81 KFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFV 148 (148)
T ss_dssp EEEEEECCE-EEEECCTTSTTCCEEEEECSEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHEEEEEEEECCCEEEEEECCCEEEEEEEHHHHHCCEEHH
T ss_conf 410246762-13467767874000234210023321022372457886577188847512754889426
No 15
>>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli BL21} (A:1-143)
Probab=100.00 E-value=0 Score=345.39 Aligned_cols=143 Identities=41% Similarity=0.758 Sum_probs=136.7
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCCC
Q ss_conf 87736457693105212137878889999999999865004764213022014400037731643233482100164420
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I~ 81 (170)
|+++|++||||+||++|.||+.+++++++++++|++||++++|+||||||||+++|+|+++.+++. ..+.+||||+|+
T Consensus 1 ai~~Iv~~~d~~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGlAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~ 78 (143)
T 1xeo_A 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELL 78 (143)
T ss_dssp CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEE
T ss_pred CCCCEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCEEEEEECCCC--CCEEEECCCEEE
T ss_conf 965400379869968072489799899999999999875438714340111554234888502566--733884482774
Q ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEE
Q ss_conf 100000111000001223210121100000246323585579997297646432700131976853
Q gi|254780297|r 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 (170)
Q Consensus 82 ~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~ 147 (170)
+.|+++ .++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+
T Consensus 79 ~~s~~~-~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lfi 143 (143)
T 1xeo_A 79 EKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFM 143 (143)
T ss_dssp EEECCB-CCEECCTTSTTCCEECCBCSEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGG
T ss_pred EECCEE-EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEHHHHHHHHHCCEEHH
T ss_conf 202124-30477543122223455531688899968998999999320020688778986899226
No 16
>>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A (A:1-143)
Probab=100.00 E-value=0 Score=345.39 Aligned_cols=143 Identities=41% Similarity=0.758 Sum_probs=136.7
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCCC
Q ss_conf 87736457693105212137878889999999999865004764213022014400037731643233482100164420
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I~ 81 (170)
|+++|++||||+||++|.||+.+++++++++++|++||++++|+||||||||+++|+|+++.+++. ..+.+||||+|+
T Consensus 1 ai~~Iv~~~d~~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGlAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~ 78 (143)
T 2w3t_A 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELL 78 (143)
T ss_dssp CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEE
T ss_pred CCCCEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCEEEECCCCCC--CCEEEEECCEEE
T ss_conf 963300479869958261389799899999999999998689929757667955056851134456--742898797761
Q ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEE
Q ss_conf 100000111000001223210121100000246323585579997297646432700131976853
Q gi|254780297|r 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 (170)
Q Consensus 82 ~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~ 147 (170)
+.|+++ .++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+
T Consensus 79 ~~s~~~-~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lfi 143 (143)
T 2w3t_A 79 EKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFM 143 (143)
T ss_dssp EEESCE-EEEECCTTSTTCCEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCEE-EECCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEEEEHHHHHHHHCCEEEH
T ss_conf 456605-32688636778223434314899999913996999999871387342246876898201
No 17
>>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis} (A:22-180)
Probab=100.00 E-value=0 Score=340.36 Aligned_cols=151 Identities=28% Similarity=0.374 Sum_probs=142.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCC-------CCCEECCCCCCCHHHHHHH
Q ss_conf 121378788899999999998650047642130220144000377316432334-------8210016442010000011
Q gi|254780297|r 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-------NPMVFINPKIITFSDDFSV 89 (170)
Q Consensus 17 ~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~-------~~~~~iNP~I~~~s~e~~~ 89 (170)
.|+||+.+|+++++++++|++||++++|+||||||||+++|+|+++.++..... .+.++|||+|++.|+++..
T Consensus 1 va~~V~~~~~~l~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~~~~~~iNP~i~~~s~~~~~ 80 (159)
T 3e3u_A 1 TVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDT 80 (159)
T ss_dssp CCCTTSCCCTTHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBCTTSCSEEEEEEEEEEESCCCCSCCCTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEE
T ss_conf 75565203199999999999999878996850677496501899973765453322443335870002323012787464
Q ss_pred HHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 100000122321012110000024632358557999729764643270013197685364788999999999999985
Q gi|254780297|r 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 (170)
Q Consensus 90 ~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~k~~k~~k 167 (170)
++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|++|+||+++.++..+.++++++.|
T Consensus 81 ~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~ 158 (159)
T 3e3u_A 81 DDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 158 (159)
T ss_dssp CEEECTTSTTCEEECCCCSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHHTC
T ss_pred EECCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHCCEECHHHCCHHHHHHHHHHHHHCCC
T ss_conf 121686768983265546327999997889999999802342688788684388920753399999999999997388
No 18
>>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} (A:1-156)
Probab=100.00 E-value=0 Score=332.31 Aligned_cols=144 Identities=38% Similarity=0.614 Sum_probs=131.3
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-----------CC
Q ss_conf 8773645769310521213787888999999999986500476421302201440003773164323-----------34
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-----------RK 70 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-----------~~ 70 (170)
|+++|++||||+||++|+||+.+ +++++++++|++||++.+|+||||||||+++|+|+++.++... ..
T Consensus 1 mi~~Iv~~~~p~Lr~~a~~V~~~-~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~~~~~ 79 (156)
T 1v3y_A 1 MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVR 79 (156)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCCC-TTHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCS
T ss_pred CCCCCCCCCCHHHHCCCEECCCC-HHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 91661418996895727346884-36999999999999986425854204254346899984055730455432102467
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCCCCC-HHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEE
Q ss_conf 8210016442010000011100000122321-0121100000246323585579997297646432700131976853
Q gi|254780297|r 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 (170)
Q Consensus 71 ~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~-~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~ 147 (170)
.+.+||||+|+..|+ ...++|||||+||.+ +.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||||+||+
T Consensus 80 ~~~v~INP~I~~~~~-~~~~~EgClS~p~~~~~~V~R~~~I~v~y~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~i 156 (156)
T 1v3y_A 80 RVYVVANPVITYREG-LVEGTEGXLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFF 156 (156)
T ss_dssp CEEEEEEEEEEEEEC-CEEEEECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGG
T ss_pred CEEEEECCEEEEECC-EEECCCCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEECEEEEEEEHHHHCCCCEEEH
T ss_conf 339986989998311-34135777788986125876567899999963795689997050430103164722889734
No 19
>>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* (A:1-30,A:243-379)
Probab=24.81 E-value=51 Score=14.64 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=28.1
Q ss_pred CEEEHHHC-CCCCEEEEECCCC--CCCCCCCEECCCCCCC
Q ss_conf 21302201-4400037731643--2334821001644201
Q gi|254780297|r 46 GLAAVQIG-VLYRLVVIDLQDH--AHRKNPMVFINPKIIT 82 (170)
Q Consensus 46 GLAA~QIG-~~~ri~vv~~~~~--~~~~~~~~~iNP~I~~ 82 (170)
|-.+|+|| +....+++|+++. ....+..+++++.|..
T Consensus 100 G~~~pIvGrIsMD~~mVDitd~~~v~vGD~V~l~G~~it~ 139 (167)
T 2rjg_A 100 GREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPV 139 (167)
T ss_dssp TEEEEBCSCCCSSCEEEECCTTCCCCTTCEEEEEBTTBCH
T ss_pred CEEEEEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCH
T ss_conf 9991543186443589988898788999999995899999
No 20
>>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1); PB1 domain, interaction domain, polymorphism; 1.56A {Homo sapiens} (A:)
Probab=23.32 E-value=48 Score=14.79 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHCCCCCCCCHHHH---HCCHHEEEEECCCCCEEEEEEEC
Q ss_conf 000001223210121---10000024632358557999729
Q gi|254780297|r 91 QEGCLSIPDYRADVK---RSAFITVRYMDCNAQHQIIYADG 128 (170)
Q Consensus 91 ~EGCLS~Pg~~~~V~---R~~~I~v~~~d~~G~~~~~~~~g 128 (170)
.+.++||..+...|. +...+.++|.|.+|..+.+.-+.
T Consensus 24 ~~~~~s~~~L~~~i~~~f~~~~~~lkY~DeegD~vti~sd~ 64 (87)
T 2bkf_A 24 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp CGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCHH
T ss_conf 88787799999999986586640478886999989985778
No 21
>>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83} (A:55-102,A:305-333)
Probab=21.41 E-value=20 Score=17.05 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=13.3
Q ss_pred CEEEHHHCCCCCEEEEE
Q ss_conf 21302201440003773
Q gi|254780297|r 46 GLAAVQIGVLYRLVVID 62 (170)
Q Consensus 46 GLAA~QIG~~~ri~vv~ 62 (170)
||.|||||+.-.+-..+
T Consensus 1 GLpa~~vGveAEi~AL~ 17 (77)
T 3g0t_A 1 GLPAPQIGIETEIQKLR 17 (77)
T ss_dssp CSCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 99876999999999974
No 22
>>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* (A:138-181)
Probab=21.40 E-value=57 Score=14.33 Aligned_cols=29 Identities=7% Similarity=-0.110 Sum_probs=24.3
Q ss_pred HHHHHCCHHEEEEECCCCCEEEEEEECCE
Q ss_conf 01211000002463235855799972976
Q gi|254780297|r 102 ADVKRSAFITVRYMDCNAQHQIIYADGLL 130 (170)
Q Consensus 102 ~~V~R~~~I~v~~~d~~G~~~~~~~~g~~ 130 (170)
..|+.|-++++.|+..+|++++.+...|.
T Consensus 6 ~~v~gpGklelvftp~dG~~~~~~V~~F~ 34 (44)
T 2uxq_A 6 IFAEAGGKLEIVVTDKNGKETRQTIMEVD 34 (44)
T ss_dssp EEETTCEEEEEEEECTTSCEEEEEEEEES
T ss_pred EEECCCCCEEEEEECCCCCCCCCEEEECC
T ss_conf 06469860489982266432210012116
No 23
>>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin digestion, mechanism; 1.90A {Proteus vulgaris} (A:1-241)
Probab=21.24 E-value=45 Score=14.95 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=30.6
Q ss_pred EECCCCCCCHHHHHHHHH-HHCCCCC--CCCHHHHHCCHHEEEEE---CCCCC-----EEEEEEECCEEEEEEEEHH
Q ss_conf 001644201000001110-0000122--32101211000002463---23585-----5799972976464327001
Q gi|254780297|r 74 VFINPKIITFSDDFSVYQ-EGCLSIP--DYRADVKRSAFITVRYM---DCNAQ-----HQIIYADGLLATCLQHELD 139 (170)
Q Consensus 74 ~~iNP~I~~~s~e~~~~~-EGCLS~P--g~~~~V~R~~~I~v~~~---d~~G~-----~~~~~~~g~~Ar~~QHEiD 139 (170)
.+-+|.......+....+ ..-++.- .++-+.+--..+++++- ..+|+ ++.+-|+||-|.-+.=+.|
T Consensus 86 ti~~~~~~~~~~~~~~~~g~~~~~~~~~WIYNE~p~d~~l~f~Fg~gl~~~~~~~~~F~~~LnF~GWRa~wV~y~~D 162 (241)
T 1hn0_A 86 TLHKKLIVPTDKEASKAWGRSSTPVFSFWLYNEKPIDGYLTIDFGEKLISTSEAQAGFKVKLDFTGWRAVGVSLNND 162 (241)
T ss_dssp EEECCBCCCCHHHHHHHHTSSEEEEEEEEEEESSCCSSEEEEEEESSCCTTCCCSEEEEEECCCCEEEEEEEETTTS
T ss_pred EEEEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCHHHCCCHHHHCCEEEEEEECCEEEEEEECCCC
T ss_conf 76422531476567665255788517888404777573588631233342014215707987411315764440673
Done!