HHsearch results for GI: 254780297 and protein with PDBid: 1v3y_A
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=0 Score=368.68 Aligned_cols=160 Identities=36% Similarity=0.645 Sum_probs=140.3
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCC-----------C
Q ss_conf 87736457693105212137878889999999999865004764213022014400037731643233-----------4
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-----------K 70 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~-----------~ 70 (170)
|+++|++||||+||++|+||+.++ +++++++||++||++++|+||||||||+++|+||++....... .
T Consensus 1 Mil~Iv~~gdpvLr~~a~~V~~~~-~~~~li~dM~~tm~~~~GvGLAApQIGi~~rifvi~~~~~~~~~~~~~~~~~~~~ 79 (192)
T 1v3y_A 1 MVYPIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVR 79 (192)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCCCT-THHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCS
T ss_pred CCCCCCCCCCHHHHCCCEECCCCC-HHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 915603089968947173478850-6999999999999876996011211382245899971377753211353000467
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCCCCC-HHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEE
Q ss_conf 8210016442010000011100000122321-012110000024632358557999729764643270013197685364
Q gi|254780297|r 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 (170)
Q Consensus 71 ~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~-~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~dr 149 (170)
.+++++||.| ..|+++..+||||||+||++ +.|+||.+|+|+|+|.+|+.++.+++||+|||||||+|||||+||+||
T Consensus 80 ~~~~~~npii-~~~~~~~~~~EGCLS~Pg~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G~lf~Dr 158 (192)
T 1v3y_A 80 RVYVVANPVI-TYREGLVEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFER 158 (192)
T ss_dssp CEEEEEEEEE-EEEECCEEEEECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGG
T ss_pred CEEEECCCEE-EEECCCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCEEEHHC
T ss_conf 4399759689-872560650357667899751487657889999986799699999960101335168574298963440
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 78899999999999
Q gi|254780297|r 150 LSRLKRDMITKKMS 163 (170)
Q Consensus 150 ls~~kr~~~~~k~~ 163 (170)
+|+.+|+.+.++.+
T Consensus 159 l~~~k~~~~~~~~~ 172 (192)
T 1v3y_A 159 LPKPKREAFLEANR 172 (192)
T ss_dssp SCHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99989999999999