HHsearch results for GI: 254780297 and protein with PDBid: 3cpm_A
>3cpm_A Peptide deformylase, chloroplast; alpha beta, hydrolase, iron, metal-binding, plastid, protein biosynthesis, transit peptide; 2.40A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=390.73 Aligned_cols=168 Identities=35% Similarity=0.602 Sum_probs=161.7
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
|+.++|++||||+||++|.+|+.++++++++++||++||++++|+||||||||+++|+||++..+......+.++|||+|
T Consensus 14 ~~~l~Iv~~~dpiLr~~~~~v~~~~~~~~~li~dM~~tm~~~~GvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I 93 (193)
T 3cpm_A 14 ETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKI 93 (193)
T ss_dssp CSSCCCCCTTCGGGTSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSCSTTSSCCEEEEEEEE
T ss_pred CCCCEEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCHHHHEEECCCCCCCCCCCCCCCCCEE
T ss_conf 67840777899799371634787898999999999999987898174476629325511330231234552100244133
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHH
Q ss_conf 01000001110000012232101211000002463235855799972976464327001319768536478899999999
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~ 160 (170)
++.|+++..++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||||||+|||||+||+||+++.++..+.+
T Consensus 94 ~~~s~~~~~~~EgCLS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~Gilf~Drl~~~~~~~~~k 173 (193)
T 3cpm_A 94 KKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIRE 173 (193)
T ss_dssp EEECSSEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTTHH
T ss_pred ECCCCCEEEECCCCCCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCEEEEEEEHHHHHCCEEHHHHCCHHHHHHHHH
T ss_conf 30477089812455678998537876406999998278989999997464777544357637883478559889999999
Q ss_pred HHHHHHHH
Q ss_conf 99999850
Q gi|254780297|r 161 KMSKLVQL 168 (170)
Q Consensus 161 k~~k~~k~ 168 (170)
+++|+.+.
T Consensus 174 ~~~k~~k~ 181 (193)
T 3cpm_A 174 ELEALEKK 181 (193)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998