HHSEARCH alignment of GI: 254780297 and SCOP domain: d1ix1a_

Alignment
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00  E-value=0  Score=388.20  Aligned_cols=166  Identities=44%  Similarity=0.773  Sum_probs=159.4

Q ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCCC
Q ss_conf             87736457693105212137878889999999999865004764213022014400037731643233482100164420
Q gi|254780297|r    2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII   81 (170)
Q Consensus         2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I~   81 (170)
                      |+++|++||||+||++|.||+.+++++++++++|++||++++||||||||||+++|+||++.++..  ..+.+||||+|+
T Consensus         1 ail~Iv~~~dp~Lr~~~~~v~~~~~~~~~li~dM~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~   78 (169)
T d1ix1a_           1 AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEFE   78 (169)
T ss_dssp             CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECSSSS--CCEEEEEEEEEE
T ss_pred             CCCCEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCC--CCCEEEECCEEE
T ss_conf             920262279979958362389699899999999999876536636563011101455888656445--885486424054


Q ss_pred             CHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHHH
Q ss_conf             10000011100000122321012110000024632358557999729764643270013197685364788999999999
Q gi|254780297|r   82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK  161 (170)
Q Consensus        82 ~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~k  161 (170)
                      +.|+++...+|||||+||+++.|.||.+|+|+|+|.+|++++.+++||+|||+|||+|||||+||+||+|+.+|.++.+|
T Consensus        79 ~~s~~~~~~~EgClS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~lf~Dr~~~~~~~~~~kk  158 (169)
T d1ix1a_          79 PLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKK  158 (169)
T ss_dssp             ESCSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEHHHHHHHHHCCEEHHHHCCHHHHHHHHHH
T ss_conf             04430798617643015644332542016888761469588999966014303236587589923663599899999999


Q ss_pred             HHHHHHHC
Q ss_conf             99998504
Q gi|254780297|r  162 MSKLVQLR  169 (170)
Q Consensus       162 ~~k~~k~k  169 (170)
                      ++|+.|.+
T Consensus       159 ~~k~~k~~  166 (169)
T d1ix1a_         159 LEKQHRQQ  166 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99998766


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Pseudomonas aeruginosa [TaxId: 287]