HHSEARCH alignment of GI: 254780297 and SCOP domain: d1lm6a_

Alignment
>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00  E-value=0  Score=361.06  Aligned_cols=157  Identities=29%  Similarity=0.406  Sum_probs=134.8

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCHH-HHHHHHH------------HHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf             987736457693105212137878889-9999999------------998650047642130220144000377316432
Q gi|254780297|r    1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDN------------MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA   67 (170)
Q Consensus         1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~-~~~li~d------------m~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~   67 (170)
                      |++++|+++|||+||++|+||+.+.++ ...++++            |.+||++++||||||||||+++|+||++.++..
T Consensus        14 m~m~~Iv~~g~p~Lr~~a~~V~~~~~~~~~~~~~~l~~~l~~~~d~~m~~tm~~~~GvGLAApQIGi~~Rifvv~~~~~~   93 (202)
T d1lm6a_          14 IDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIV   93 (202)
T ss_dssp             CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC--
T ss_pred             CCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHCCCCCEEEEECCCCH
T ss_conf             71755642799899088850588875788887899999999610478999998667852111331444338999847605


Q ss_pred             C--------CCCCCEECCCCCCCHHHH--HHHHHHHCCCCC-CCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEE
Q ss_conf             3--------348210016442010000--011100000122-32101211000002463235855799972976464327
Q gi|254780297|r   68 H--------RKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH  136 (170)
Q Consensus        68 ~--------~~~~~~~iNP~I~~~s~e--~~~~~EGCLS~P-g~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH  136 (170)
                      .        ...+.+||||+|++.|.+  ....+|||||+| |+++.|+||.+|+|+|+|.+|++++.+++||+||||||
T Consensus        94 ~~~~~~~~~~~~~~v~INP~Ii~~s~~~~~~~~~EGCLSvP~~~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QH  173 (202)
T d1lm6a_          94 EEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQH  173 (202)
T ss_dssp             ---------CCEEEEEEEEEEEEECSSEEECTTCCCCTTCCSCCCSCBCEESCEEEEEECTTSCEEEEEECHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCEEEECCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHCEEEEEEECCCCCEEEEEEECHHHHHHHH
T ss_conf             53001222356650564143112102312552146873665554122222110136887489976999992566888978


Q ss_pred             EHHHHCCEEEEEECCHHHHHH
Q ss_conf             001319768536478899999
Q gi|254780297|r  137 ELDHLNGILFIDHLSRLKRDM  157 (170)
Q Consensus       137 EiDHL~G~lf~drls~~kr~~  157 (170)
                      |+|||||+||+||+|+.++..
T Consensus       174 EiDHL~G~lf~Drl~~~~~~~  194 (202)
T d1lm6a_         174 EIDHINGIMFYDRINEKDPFA  194 (202)
T ss_dssp             HHHHHTTCCGGGGBCSSCTTC
T ss_pred             HHHHHCCEEEHHHCCCCCHHH
T ss_conf             878418873043038454014


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Streptococcus pneumoniae [TaxId: 1313]