HHSEARCH alignment of GI: 254780297 and SCOP domain: d1v3ya_

Alignment
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=373.87  Aligned_cols=164  Identities=36%  Similarity=0.624  Sum_probs=145.4

Q ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-----------CC
Q ss_conf             8773645769310521213787888999999999986500476421302201440003773164323-----------34
Q gi|254780297|r    2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-----------RK   70 (170)
Q Consensus         2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-----------~~   70 (170)
                      |+++|++||||+||++|.||+.++ +++++++||++||++++|+||||||||+++|+||++......           ..
T Consensus         1 Mil~I~~~~dpiLr~~~~~v~~~~-~l~~li~dM~~tm~~~~GvGLAApQIGi~~rifvi~~~~~~~~~~~~~~~~~~~~   79 (182)
T d1v3ya_           1 MVYPIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVR   79 (182)
T ss_dssp             CCCCCCCTTCGGGGSCCBCCCCCT-THHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCS
T ss_pred             CEECCCCCCCHHHHCCCEECCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHCCCCCCCCC
T ss_conf             907004289968957183578843-6999999999999876424733102275235999971565631000254212467


Q ss_pred             CCCEECCCCCCCHHHHHHHHHHHCCCCCCCC-HHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEE
Q ss_conf             8210016442010000011100000122321-012110000024632358557999729764643270013197685364
Q gi|254780297|r   71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH  149 (170)
Q Consensus        71 ~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~-~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~dr  149 (170)
                      .+++++||+|+. |+++..+||||||+||++ +.|+||.+|+|+|+|++|+.++.+++||+|||||||+|||||+||+||
T Consensus        80 ~~~~~inp~i~~-~~~~~~~~EGCLS~Pg~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G~l~~Dr  158 (182)
T d1v3ya_          80 RVYVVANPVITY-REGLVEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFER  158 (182)
T ss_dssp             CEEEEEEEEEEE-EECCEEEEECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGG
T ss_pred             CEEEEECCEEEE-ECCEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEECCEEEEEEEHHHHHCCEEEHHH
T ss_conf             439982969887-3113530146567898503687667889999996589789999971778998871175589951442


Q ss_pred             CCHHHHHHHHHHHH-HHHH
Q ss_conf             78899999999999-9985
Q gi|254780297|r  150 LSRLKRDMITKKMS-KLVQ  167 (170)
Q Consensus       150 ls~~kr~~~~~k~~-k~~k  167 (170)
                      +|+.+|+++.++.+ +++|
T Consensus       159 l~~~k~~~~~~~~~~~l~~  177 (182)
T d1v3ya_         159 LPKPKREAFLEANRAELVR  177 (182)
T ss_dssp             SCHHHHHHHHHHTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             8998999999999999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Thermus thermophilus [TaxId: 274]