BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780297|ref|YP_003064710.1| peptide deformylase
[Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 174

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E +++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
 gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
          Length = 172

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLV+ PDPILR+ S P+E++++++   ID+MLE MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K+P VFINP+++   D  SVY+EGCLSIPDY ADV+R   ITV+Y+  + +
Sbjct: 61  IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R
Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169


>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
 gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
          Length = 170

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/164 (49%), Positives = 115/164 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V  PDP LR +S P++ ++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP I   + D + YQEGCLS+PDY  +++R A  TV Y+D +  
Sbjct: 61  MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ +
Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164


>gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
 gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
 gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|294838986|ref|ZP_06783669.1| peptide deformylase [Acinetobacter sp. 6013113]
 gi|294842464|ref|ZP_06787147.1| peptide deformylase [Acinetobacter sp. 6014059]
 gi|294858778|ref|ZP_06796547.1| peptide deformylase [Acinetobacter sp. 6013150]
 gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
 gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
 gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
          Length = 176

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--SKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1]
 gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1]
          Length = 177

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/169 (53%), Positives = 128/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV  PDP+LR+VS+P+E+++  +     +MLE MY   GIGLAA+Q+G   R++V
Sbjct: 1   MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +    KNP VFINP+I++ SD  S ++EGCLSIPDY A+V+R A +TV+Y+D + +
Sbjct: 61  LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K  KL + R
Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169


>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
          Length = 168

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PYELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii SDF]
 gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii]
          Length = 176

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--SKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR  + +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168


>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 175

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 168

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
          Length = 174

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 100/169 (59%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPKI+  S++ SVY+EGCLSIPDY A+V+R A I V Y+D + +
Sbjct: 61  LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
 gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
          Length = 168

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
 gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94]
 gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99]
 gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
 gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
 gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
 gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
 gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
 gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 175

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
 gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
          Length = 175

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
 gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
 gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 175

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/169 (53%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +FINP I+  SD+ S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 174

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169


>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
 gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
 gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
 gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
          Length = 187

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 13  MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 73  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181


>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
 gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
          Length = 176

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++  +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSEN--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R+
Sbjct: 119 AFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168


>gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 176

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   RL+V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL + +
Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLARDK 169


>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1]
 gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1]
          Length = 175

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047]
          Length = 168

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR  + PI  ++  I  L D+MLE MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+VFINP++    D F    EGCLS+P +   V+R   I VR  D N +
Sbjct: 61  IDVSED--KSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  DG+LA C+QHE+DHL+G LF+D+LS LKR  I KK+ K+ + R
Sbjct: 119 TFEIEDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167


>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
 gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
 gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
 gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
          Length = 168

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 176

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSE--AKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614]
 gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614]
          Length = 202

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/168 (55%), Positives = 121/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP+LR V  P+  ++ D+  L D+MLE MY   GIGLAA QIG+L R+ V
Sbjct: 31  MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINPKI+  SDD SVYQEGCLSIPDY  +V+R A +TV++++    
Sbjct: 91  LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  ++
Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198


>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   + +PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSE--SKDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
 gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
          Length = 168

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M E MY+  GIGLAA Q+ V  +L+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  ++  PMVFINP+I   +++ + Y+EGCLS+P +   V R A + +  +D +  
Sbjct: 61  MDLSEDHNK--PMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + +
Sbjct: 119 AFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167


>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
 gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 178

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 5   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 65  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173


>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
 gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
          Length = 176

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSE--AKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
          Length = 175

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
          Length = 176

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++    
Sbjct: 61  MDLSEE--KNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167


>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
 gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
          Length = 168

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+E ++  +  LIDNMLE MY+  GIGLAA Q+ V  RL+V
Sbjct: 1   MAVLDILEFPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  ++     PM+FINP++    D    Y EGCLS+P +  +V R   I V  +  + +
Sbjct: 61  LDTSENRDS--PMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGL A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 119 AFSLELDGLTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
 gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8]
 gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E]
          Length = 184

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL       +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q
Sbjct: 61  MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169]
 gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
 gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
 gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1]
 gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7]
 gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72]
 gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
          Length = 184

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL       +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q
Sbjct: 61  MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
 gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
          Length = 168

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +   P V+INP+I   +D+ + Y+EGCLS+P +   VKR+A + +  +D +  
Sbjct: 61  MDLSEERNE--PKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + +
Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167


>gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
 gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
          Length = 173

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/169 (51%), Positives = 124/169 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S P+ +++  +    D+MLE MY   GIGLAA+Q+G   R++ 
Sbjct: 1   MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+  + +
Sbjct: 61  IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K  + +
Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169


>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 171

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
 gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
          Length = 176

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--SKDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHL G LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++++PDP LR V+ P+ +++ DI  L D+MLE MY   GIGLAA Q+GV  R+VV
Sbjct: 1   MAILDILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +    + P+V INP+I+      +  +  CLSIP +  DV+R+  I  R +D   +
Sbjct: 61  MDLAEE-GARQPLVLINPEILDREGAATGQEG-CLSIPGFYEDVERAERIRFRALDREGR 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL+A C+QHE+DHL+G LF+D+LS LKR  I +K+ KLV+ 
Sbjct: 119 PWEQEAEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVRQ 166


>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
 gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
 gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
          Length = 168

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +D    YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSEDRSE--PRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+ + +
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKIHRQQ 167


>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 171

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+ S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 177

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ FPDP LR  + P+E ++ +I  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D      P V INP+I+  S +  + +  CLS+P +   V+R+  I VR +  + +
Sbjct: 61  ADVSDDQSE--PHVLINPEILETSGEEEMDEG-CLSVPGFYEKVQRADRIRVRALGRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K 
Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEKQ 162


>gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 213

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 46  MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 105

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 106 MDLSEDRSE--PRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 163

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 164 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 212


>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
 gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
          Length = 189

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/168 (57%), Positives = 124/168 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++  PDP+LR V  PIEK++++ + L D+MLE MY   GIGLAA Q+G+L R+ V
Sbjct: 18  MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINP+II + D+ SVYQEGCLSIPDY  DV+R A + V++MD    
Sbjct: 78  LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  +L
Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185


>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
 gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
          Length = 168

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+E ++ D+  LIDNM+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAVLDILEFPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ ++  R  PMVFINP++    D    Y EGCLS+P +  +V R   + V  +  + +
Sbjct: 61  LDISEN--RDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGL A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 119 SFSQELDGLAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 175

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   
Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQ 168


>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 171

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
 gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
          Length = 171

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/168 (50%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LRRVS P+EKI S++  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 1   MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P VFINP+I++ S+D +VY+EGCLSIP+Y  +V+R A + VR+MD   +
Sbjct: 61  MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +L
Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168


>gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107]
 gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107]
          Length = 169

 Score =  161 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR V++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+VFINP+I    ++ S Y EGCLS+P +   V+R   I V+ +D    
Sbjct: 61  IDVSED--KSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   GLLA C+QHELDHLNG LF+DH+S  KR  I  K+ K  +
Sbjct: 119 AFELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEKKHK 165


>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
          Length = 171

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
 gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
          Length = 168

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDKSE--PRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + R
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167


>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
 gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
          Length = 168

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDKSE--PRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + R
Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167


>gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct]
          Length = 169

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
 gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
          Length = 177

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR ++ P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +H  +  P+VFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  MDLSEH--KDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ KL + R
Sbjct: 119 AFEIEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167


>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 176

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  MDLSEE--KNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|330806738|ref|YP_004351200.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 168

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  T +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDRSE--PRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + 
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166


>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
 gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
          Length = 174

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 113/170 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDPIL+ VS+P+++++ D+  L+D+ML+ MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP +   SD    Y+EGCLS+P    +++R   I ++Y+D +  
Sbjct: 61  MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+G+ A C+QHE+DHL G+LFID+LSRLKR    +K+ K+ + +D
Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170


>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
 gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
          Length = 176

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  DI  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   + +   Y+EGCLS+P     V+R + + +  ++ + Q
Sbjct: 61  MDLSEE--KNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
 gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
          Length = 189

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/168 (49%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR VS P++KI  +I  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 19  MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P VFINP+I++ SDD SVY+EGCLSIP+Y  +V+R A + +RYMD + +
Sbjct: 79  MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K  +L
Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186


>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
          Length = 171

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP LR++S+PIE++++++  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 168

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
 gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 168

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 168

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDRSE--PRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 167


>gi|328545268|ref|YP_004305377.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
 gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
          Length = 172

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/170 (52%), Positives = 121/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++I PDP+LR+   P+ K++  I  L D+MLE MY+  GIGLAA QIGVL RL V
Sbjct: 1   MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + PMVFINP+I+  S++ SVYQEGCLSIP+Y  +V+R A + VR+ + +  
Sbjct: 61  LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K  +  +
Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAKQARHAE 170


>gi|190890084|ref|YP_001976626.1| peptide deformylase protein [Rhizobium etli CIAT 652]
 gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 171

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
          Length = 168

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP++   +DD   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRTE--PRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+ LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + 
Sbjct: 119 PYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166


>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 168

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSEDRTE--PRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + 
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166


>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
 gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
          Length = 180

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 13  MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 73  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 179


>gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 171

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 170

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+P+E ++  +  L D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+        P +F+NP+I+T SD  SVY+EGCLSIPDY A+V+R A +TVRY+  + +
Sbjct: 61  IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K  +
Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTKAAR 167


>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
 gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
          Length = 172

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+ K++  I  LID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +      PMVFINP I     +   Y+EGCLS+P +   V R   I V  +D + +
Sbjct: 61  IDLGEETKE--PMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +I  +GLLA C+QHE+DHLNG LF+D++S +KR  I KK+ K  + 
Sbjct: 119 EFVIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166


>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 173

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 116/169 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP LR +++P+  I+ +I  L D+MLE MY   GIGLA  Q+G L R++V
Sbjct: 1   MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V +NP+I+  SDD SVY+EGCLSIPD  A+V+R A + VR++D N  
Sbjct: 61  LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    +GL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + R
Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169


>gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b]
 gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b]
          Length = 179

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/164 (52%), Positives = 113/164 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR VS P+  I+++I  L+D+MLE MY   G+GLAA+Q+ V  R++V
Sbjct: 1   MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D       KNPMVFINP+I+  S++  VYQEGCLS+PDY  +V+R A + V ++D    
Sbjct: 61  ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK  K
Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVK 164


>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 171

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D   +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
 gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
          Length = 168

 Score =  158 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++PIE ++  I  LID+M E MY+  GIGLAA Q+ V  RLVV
Sbjct: 1   MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +   P VFINP+    +++   YQEGCLS+P +  +V R   + +R +D + Q
Sbjct: 61  MDLSEDKNE--PRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + 
Sbjct: 119 PFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166


>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 168

 Score =  158 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B]
 gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B]
          Length = 168

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR  ++P+ +++  I  LID+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAILPILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P VFINP++         Y EGCLS+P +   V R + I V  +D    
Sbjct: 61  IDVSENRDE--PRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + R
Sbjct: 119 TFAEELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEKEHKRR 167


>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 171

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 116/167 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDP+LR  S P+  I ++I  L+ +M E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       ++  VFINP+I+  S++  VY EGCLSIPDY A+V+R   + V++ D +  
Sbjct: 61  IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167


>gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 171

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 86/167 (51%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+E +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK  +
Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167


>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
          Length = 172

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/167 (52%), Positives = 119/167 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I P+P LR++S P+ +I+ +I  L  +MLE MY   GIGLAA+Q+GV  R++ 
Sbjct: 1   MAILPILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      KNP+V INP++++ S++ S Y EGCLSIP+Y  +V+R A +TVRY D    
Sbjct: 61  IDIAREDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K  +
Sbjct: 121 THEIAADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTKAAR 167


>gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 170

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 96/169 (56%), Positives = 131/169 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TV+Y+  + +
Sbjct: 61  IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K  + +
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169


>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
 gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter sp. ADP1]
          Length = 174

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPD  LR +++P+EK+  +I  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   +++   Y+EGCLS+P     V R++ + +  ++ N +
Sbjct: 61  MDLSEE--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
 gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 100/169 (59%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + +
Sbjct: 61  IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169


>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
 gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
          Length = 168

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+ +++  I  LI +M + M    GIGLAA QI V  R++V
Sbjct: 1   MAILKILEFPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +      P VFINP+I    +    Y+EGCLS+P +   V R A + +R +D   +
Sbjct: 61  MNLGEDDIG--PRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A GLLA C+QHE+DHL G LF+D+LS  KR  I KK+ K+ + 
Sbjct: 119 AFKEEARGLLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKIHRQ 166


>gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 189

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/187 (39%), Positives = 102/187 (54%), Gaps = 20/187 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS+P+E  + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--------------------EGCLSIPDY 100
           IDLQ       P V         +   +  +                    EGCLS+P+ 
Sbjct: 61  IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+V R + I  R+ D +        D LLATCLQHE+DHL GILFIDHLSRLKR M  K
Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180

Query: 161 KMSKLVQ 167
           K+ KL +
Sbjct: 181 KLEKLRR 187


>gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
 gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
          Length = 168

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V+ P+  +      L+D+MLE MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAVLEILEFPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  +   P+VFINP++     +   Y EGCLS+P Y   V R   I V+ +  + +
Sbjct: 61  IDLSEKQND--PLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K  + R
Sbjct: 119 PFSSEIEGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKDQRRR 167


>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
 gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
          Length = 173

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR V++PIE+++  +   ID+M E MY + G+GLAA Q+ V  RL V
Sbjct: 1   MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  ++ +            IT S+     +EGCLS P+  A V+R+  ITV+ +D N +
Sbjct: 61  ADCSENQNEPL---VFINPEITRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L++
Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167


>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 187

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 106/169 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++   P+ +I  +I  L D+ML  MY   GIGLA  Q+  + R++ 
Sbjct: 14  MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        +PMV INP+I+  S++ + Y+EGCLSIP+  ADV+R A + VR+      
Sbjct: 74  MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182


>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 167

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+
Sbjct: 1   AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +   
Sbjct: 61  DLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 166


>gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 178

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+ + P++K++ +I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  +  P+VFINP+I+    +  + +  CLS+P Y   V+R+  + VR +D N +
Sbjct: 61  IDVSENNDQ--PLVFINPEILDRVGEEEMQEG-CLSVPGYFETVRRADRVRVRALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL + 
Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTRQ 165


>gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 170

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 118/170 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PDPILR+ S P++++N +I  L+ NMLE MY+  GIGLAAVQ+G+L R++V
Sbjct: 1   MSILTIVKEPDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+ F+NPKI+  SD     QEGCLSIP +  ++KR     V+Y+D + +
Sbjct: 61  IDISGETSLKKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGLLATC+QHE+DH NG LFID+LS+LK+  I KK++K  + ++
Sbjct: 121 EKTLKADGLLATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTKAQKNQE 170


>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
          Length = 171

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 134/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV
Sbjct: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ
Sbjct: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD
Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170


>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
 gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 171

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1]
 gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 126/170 (74%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDPILR +S+P+E I+S +  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+  +  +KNP+V INP+++  SD+ ++Y+EGCLSIP+Y A+V+R   + VRY +   +
Sbjct: 61  LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K  K  + ++
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKEKN 170


>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
 gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
          Length = 190

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 117/170 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+  S+P+  ++  I  L+ +ML+ MY   GIGLAA QIGVL R++V
Sbjct: 21  MAVLPILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + P+  +NP+I+  SD+ + Y+EGCLS+P++ ++V R A + VRY+D    
Sbjct: 81  MDIGRKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q I ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K  +  +
Sbjct: 141 KQEILADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARKESE 190


>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++I PDP L+  + P+ +I  ++  L D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 4   MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  +D      P+V  +P+I+  SD  +VY+EGCLSIPD  A+V+R A + VR+ D   
Sbjct: 64  MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + +
Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKREK 173


>gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 178

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+ + P+E  +  +   +D+M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MTILSILEFPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+++    +  + +EGCLS+P     V R+  + VR  D N +
Sbjct: 61  IDVSEEKDA--PLCLINPELLEKQGNGEM-EEGCLSVPGIFEKVPRAESVRVRAQDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL G LF+DHLS LKR M  KK+ K  +LR+
Sbjct: 118 FFEMSAEGLLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167


>gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 194

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 19  MAILDILHFPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIV 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+  INP+I++   +  + +  CLS+P     VKR+A I+VR +D +  
Sbjct: 79  IDLSEE--KNQPLCLINPEILSKEGEEKMDEG-CLSVPGIYESVKRAARISVRALDRDGA 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE+DHLNG LF+D+LS LKR  I K++ K  +LR
Sbjct: 136 PFELETEGLLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184


>gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 173

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP L++ +  +  +  +++ L D+MLE MY   GIGLAA Q+GVL RL+V
Sbjct: 1   MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D   D +    P+V  NP++I  SDD +VY+EGCLSIPD  A+V R A + VR+++   
Sbjct: 61  LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K  KL + R
Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170


>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
 gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
          Length = 168

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPD  LR V++P+E+++  +  +ID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P+VFINP+I    +    Y+EGCLS+P +  +V R   + V  ++ + +
Sbjct: 61  IDISENHDE--PLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++  +GLLA C+QHE+DHL G LF+D++S +KR  I KK+ K  + R
Sbjct: 119 EFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKER 167


>gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
 gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
          Length = 168

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR ++ P+  +++ +  L D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAILSILEFPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  +  P +FINP +         Y EGCLS+P +   ++R   I V   D + +
Sbjct: 61  IDISEN--KDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + RD
Sbjct: 119 LFSRELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168


>gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 111/168 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP L++ +  +  +++ I  L+D+MLE MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAVLSILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+      + P+  +NP+I+  SDD + Y+EGCLS+P++ A V R   I VRY D    
Sbjct: 61  ADIGRSEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           HQ I ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K  + 
Sbjct: 121 HQEIDADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLKAKKE 168


>gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT]
          Length = 167

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V+ P+E++N DI  L+ +M E MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +               I        Y+EGCLS+P     V R+A +TV  +D + +
Sbjct: 61  IDLSEDKSAL---QVFINPKIVSQCGSQEYEEGCLSVPGIYEPVTRAAEVTVEALDEHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK+  I  K+ K  + R
Sbjct: 118 PFTLKADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKKRQRER 166


>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 172

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I P+P LR +S  +EKI+S++  L+++M + MY   GIGLAA+Q+GV  R+V 
Sbjct: 1   MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+  INP+II  S++ SVY EGCLSIP+Y  +V+R A +TVR+ D   Q
Sbjct: 61  IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D
Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170


>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
 gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
          Length = 167

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP LR +++P+E++  DI  LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MIREILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINPK+     +    QEGCLS+P +  DVKR     +   D + + 
Sbjct: 61  DLSEDKTE--PRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++ A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL + 
Sbjct: 119 FVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKLHKQ 165


>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92]
 gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
          Length = 171

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP LR ++ P+ ++  +I   ID+M E MY+  GIGLAA Q+ +  R+V 
Sbjct: 1   MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D  +   P+V INP+     ++   YQEGCLS+P +  DVKR   I ++ +D N +
Sbjct: 61  MDISDDQNE--PLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I  K+ K+ + ++
Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKIHKQQE 168


>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 172

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++I PDP L++V+ P+  I  ++    D+MLE MY   GIGLA  QIG++ RL+V+
Sbjct: 1   MIRPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+++  SD+ SVY+EGCLSIPD  A+V+R A +TV ++D +  
Sbjct: 61  DCVKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R
Sbjct: 121 LQEESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169


>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 171

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY   GIGLAAVQIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + +
Sbjct: 61  IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17]
 gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17]
          Length = 167

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P+  +  +I  LID+M E MY   GIGLAA Q+ V  ++VV+
Sbjct: 1   MILNILEYPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINPKI     D    QEGCLS+P +  +V+R     ++ +D N + 
Sbjct: 61  DLSEDNSE--PKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEA 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A GLLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL +
Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQK 164


>gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 172

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP L + + P+E ++  I  L+D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 1   MALLPILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PM   NP+II  S+D   Y+EGCLS+P+    V R   + VRY+D + +
Sbjct: 61  LDPAREDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLLA  LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+ +
Sbjct: 121 IREIDADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKMKR 167


>gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 170

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 117/170 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+  S+P+  ++  I  L+ +MLE MY   GIGLAA QIGVL R++V
Sbjct: 1   MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + P+  +NP+II  SD+ + Y+EGCLS+P++ ++V R A + VRY+D    
Sbjct: 61  MDIGRKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K  +  +
Sbjct: 121 KQELLAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLKARKEAE 170


>gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4]
 gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4]
          Length = 196

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 93/168 (55%), Positives = 122/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++  PD  LR V  P+E +++DI  L D+M E MY+  GIGLAA QIGVL RL V
Sbjct: 23  MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K+PMVFINPKI+  S+D SVYQEGCLSIPDY  D++R A + V++++ +  
Sbjct: 83  LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L
Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190


>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
 gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
          Length = 175

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P++ ++  +  L+D+M+E MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL D  +   P  ++NP I   ++D   YQEGCLS+PD    V+R   + V Y+D + +
Sbjct: 61  MDLSDERND--PRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   A+ L A C+QHE+DHL G++FID+LSRLKRD   KK+ KLV+ R
Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167


>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
 gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
          Length = 166

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ FPD  LR V++P+ ++      +ID+M E MY+  GIGLAA Q+ +  +++V
Sbjct: 1   MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP I    ++   Y EGCLS+P +   V+R   I V  +D N  
Sbjct: 61  MDLSEDKSE--PQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             II  +GLLA C+QHE+DHLNG LF+D+LS +KR  I KK+ K  + 
Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEKQQRG 166


>gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 172

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/166 (46%), Positives = 117/166 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+P+LR+VS+P++++  +   L+D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I       S Y+EGCLS+P+  A++ R +   V Y+D + +
Sbjct: 61  MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL 
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKLK 166


>gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 167

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR+ + PI  +N  I  L D+MLE MY   GIGLAA Q+ +  R++V
Sbjct: 1   MAILNILHFPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I  ++    ++EGCLS+P+    V R+  + ++ ++   +
Sbjct: 61  IDISEDKSDPL---VLINPEIVAAEGEREFEEGCLSVPEAYEAVIRADKVKIKAVNLQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGLLATC+QHE+DHL+G LF+D+LS LKR  I K++ K  + +
Sbjct: 118 DFEFTTDGLLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEKHQKQK 166


>gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11]
          Length = 189

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  +   +  L D+MLE MY+  G+GLAA QIGVL RL+V+
Sbjct: 18  MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NPKI++ SD+ +VY+EGCLSIPD  A+V R   + V +M+ +  
Sbjct: 78  DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 138 AARETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186


>gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17]
 gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17]
          Length = 173

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 121/173 (69%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDP LR VS+P+E ++  +  L+ +M+E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           IDLQ+         KNP  +INP+I++ S++ S Y EGCLSIP+  A+VKR A   V+++
Sbjct: 61  IDLQEEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D   +      DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+ + 
Sbjct: 121 DEKGEAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKIRKG 173


>gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
 gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
          Length = 172

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/168 (50%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   PL+ FPD  LRRV+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLPLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  P+  INP+II+  D+     +GCLSIPD  A  +R  F+ VR +D N  
Sbjct: 61  IDVSEN--RDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  L A C+QHELDHL+G LFIDHLS LKR  I KK  KL +L
Sbjct: 119 EIELEASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKL 166


>gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
 gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
          Length = 176

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR +++P+   + ++  LID+M E MY+  GIGLAA Q+    +LVV
Sbjct: 1   MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   +D+   Y+EGCLS+P+Y   V R   + +  +D    
Sbjct: 61  MDLSED--GSQPRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +  A GLLA C+QHE+DHLNG +F+D+LS+LK+D    K+ K+V+ R+
Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168


>gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4]
          Length = 171

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM+ + Q
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
 gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
          Length = 174

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++V+ P+  +  ++  L DNML  MY   GIGLAA Q+GV  RL+V+
Sbjct: 1   MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60

Query: 62  DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +        P+   NP++I  SD+ + Y EGCLSIPD  ADV R   +TVR+MD N  
Sbjct: 61  DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R
Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169


>gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 170

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E ++     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +      P VFINP+I+T   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSEEKDA--PQVFINPEIVTRQGEQVYQEG-CLSVPGIFADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL +
Sbjct: 118 QGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRK 167


>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 212

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 45  MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 104

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +
Sbjct: 105 MDLSEDRSE--PRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 162

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 163 PFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 211


>gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 173

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PDP L++V+ P+  +N D+  L D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV INP+++  S++ +VY+EGCLSIP+  A+V+R   + V + + + 
Sbjct: 61  MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169


>gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 172

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P++ ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II+ SD+ SVY+EGCLSIPD  A+V R A + V +MD N +
Sbjct: 61  DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRE 168


>gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
 gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
          Length = 176

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S P+E I+ D+  LID+M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   
Sbjct: 61  IDLQEPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174


>gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse]
 gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse]
          Length = 176

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/170 (51%), Positives = 124/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR VS+P+E ++S I  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPIKPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+  +  +KNP+V INP+I+  SD+ ++ +EGCLSIP+Y  +++R   + VRY D   +
Sbjct: 61  IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K  + ++
Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKEKN 170


>gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 168

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+   +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   +DD   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 171

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L+  S PI  I  +I  L  +M E MY+  G+GLAA Q+G+  +LVV
Sbjct: 1   MAILPIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +  +      I    D F   +EGCLS+P Y   +KR++ + VRY +   Q
Sbjct: 61  MDCAPKENPELIVAINPEIIEREGDSFE--EEGCLSVPGYYCRIKRNSHVKVRYQNLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  K+ + ++
Sbjct: 119 TVEREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKIQRQQE 168


>gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893]
 gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893]
          Length = 167

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P++++  +   LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINP++     +    QEGCLS+P +  DV R     +R +  + + 
Sbjct: 61  DLSEDKSE--PRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A GLLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL +
Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLHK 164


>gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 171

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 118/168 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+LR++S P+E+++  ++ L+D+MLE MY   GIGLAAVQ+GVL R++V
Sbjct: 1   MAILPIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +     NP+   NP+++       +++EGCLSIPD   +++R A +TVRY+D + +
Sbjct: 61  VDAAEDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K  K V+ 
Sbjct: 121 EQELAAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVRE 168


>gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 172

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 120/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510]
 gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510]
          Length = 170

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 123/167 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY   GIGLAA Q+GVL R++V
Sbjct: 1   MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +     NP+   NP+II  S+D +V +EGCLS+P+  A+V R   + VRY+D   Q
Sbjct: 61  VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+ +
Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKMQK 167


>gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396]
 gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396]
          Length = 168

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P++  ++ +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      PMVFINP I     D    QEGCLS+P +   V R   + +R  D N +
Sbjct: 61  IDVSEDKSE--PMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA CLQHE+DHLNG L++D+LS +KR  I KK+ K  ++R
Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167


>gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
 gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
          Length = 170

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPD  LR  + P+E ++ +   L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R  P V INP+     D+    QEGCLSIP+Y A+V R+  ++++ +D +  
Sbjct: 61  MDVSDD--RSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K  +
Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKRHR 165


>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
          Length = 176

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/170 (54%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LVI PDPILR VS+P+E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MSIKSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +
Sbjct: 61  VDIHPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 177

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           I      +D   ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D
Sbjct: 61  IDLQQPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +        +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 172

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I  D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP++I  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    D L ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + +
Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKREK 169


>gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
 gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
          Length = 188

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 120/186 (64%), Gaps = 19/186 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS P+EK + ++  L+++M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQDHAHR-------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                        K P VFINP+I+  S+++SVYQEGCLS+P+  
Sbjct: 61  IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+V+R A I  R+ D + +      +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M  KK
Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180

Query: 162 MSKLVQ 167
           + KL +
Sbjct: 181 LEKLRK 186


>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 172

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I+ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++ +    P+V  NP+++  SD+ ++Y+EGCLSIP+  A+V R   + V ++D + +
Sbjct: 61  DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1]
 gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1]
          Length = 177

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 5/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP LR +S P+E ++ ++  LI +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRLILEAPDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           IDLQ+         ++P VFINP++   S++ SVY EGCLS+P+  A+V+R A I  R++
Sbjct: 61  IDLQEEEDAEGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D          +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K  + R
Sbjct: 121 DEQGAKHEERLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174


>gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 173

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/167 (47%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+QIG   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       +NP+V ++P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167


>gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K]
 gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K]
          Length = 185

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R A + VR +D   + 
Sbjct: 61  DTSPRQEGQTLIHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDRQGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58]
 gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58]
          Length = 176

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR +S  ++ I+ D+  LID+M + MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           KNPMVFINP+I+  SDD SVY EGCLS+PD  A+V+R + I   
Sbjct: 61  IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD   +      +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNKARR 174


>gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 177

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 113/174 (64%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           I      +    ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D
Sbjct: 61  IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +        +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
 gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
          Length = 175

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V FPD  LR++  P+ + ++ +  L D+M E MY  +GIGLAA QIG+  R+VV
Sbjct: 1   MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60

Query: 61  IDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID+ +   ++     +     IT  +     +EGCLS+P+YRA++KR   IT+   D N 
Sbjct: 61  IDIPEEDGKQGKNKLVLINPKITAKEGEVASEEGCLSVPEYRAEIKRYEKITLECQDLNG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Q QI  ADGLLA C+QHELDHL+G LFID+LSRLKRD +  K  KL + +
Sbjct: 121 QKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKLKKEQ 170


>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
          Length = 174

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/168 (54%), Positives = 123/168 (73%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            K LV  PDPILR VS+P+E+I+  I  L D+MLE MY   GIGLAA+Q+GV  R++VID
Sbjct: 1   MKSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVID 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + ++   KNP+V INP+I+  SD+ ++Y+EGCLSIP+Y A V+R   + VRY D   +  
Sbjct: 61  IAENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQT 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K  + +D
Sbjct: 121 EIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168


>gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
 gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
          Length = 170

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+ + ++ +  L ++MLE MY   GIGLAA QI V  +++V
Sbjct: 1   MALLDILEFPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +           IT       Y+EGCLS+P +  +V R   I V+ ++   +
Sbjct: 61  MDVSEDKSQPM---VFINPQITVVGGEKEYEEGCLSVPGFHENVVRPDVIHVKALNAQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K  +
Sbjct: 118 AFELQADGLLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEKQHK 164


>gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC]
          Length = 171

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q
Sbjct: 61  IDVSEE--RDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + +
Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167


>gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 174

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ ++  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V ++D +  
Sbjct: 61  DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 171

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +++FPD  LRRV+  +++ ++ +  L + MLE MY   G+GLAA QI V  R+ V
Sbjct: 1   MSLLEVLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +      P+VFINP I+  S      +EGCLSIP     V R+  + VR  +   +
Sbjct: 61  ADCAEDGCAPEPLVFINPVILDRSGSVES-EEGCLSIPGVTDKVMRAEAVRVRAQNAFGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GLLA C+QHE+DHL+G LFID+LS LKR  I KK+ K ++ ++
Sbjct: 120 SFEREAGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169


>gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 193

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/179 (46%), Positives = 117/179 (65%), Gaps = 9/179 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP+LRRV  P+  ++S+I  L+D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60

Query: 61  IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+                 P+   NP+I+  S++ S Y+EGCLSIPDY  +V R A + 
Sbjct: 61  MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           V Y+D   Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK  +  +
Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAKRDN 179


>gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
 gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
          Length = 176

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 122/174 (70%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S P+E I++D+  LID+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQ-------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ       D    K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   
Sbjct: 61  IDLQEPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174


>gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2]
 gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2]
          Length = 196

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/171 (48%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PD  LR V+RP+  ++S++  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60

Query: 61  ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D    +D + + +P+   NP+I+  S++ S Y+EGCLSIP++  +V R   + V Y+D 
Sbjct: 61  LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR  I KK  K  +L
Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171


>gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 172

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++  +  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088]
 gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088]
          Length = 178

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ ++      LI +M E MY   GIGLAA Q+ V  R++V
Sbjct: 11  MALLQILEFPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VFINP++     +   Y EGCLS+P +   V R   I VR ++   +
Sbjct: 71  IDVSEDKSE--PRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGE 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K  + +
Sbjct: 129 AYEEELGGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKAHRAK 177


>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D N +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
          Length = 171

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 121/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR VS+P+E I+  I  L D+MLE MY+  G+GLAAVQ+G+  R++V
Sbjct: 1   MSIKPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KN +V INP+I+  SD+ SVY+EGCLSIP+Y A+V+R   + + Y +   +
Sbjct: 61  VDISPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  + +
Sbjct: 121 QEEIEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKKRAKKQ 169


>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
 gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLATC+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 172

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+ FPD  LR+V+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLTLLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  P+  INP+II+  D+     +GCLSIPD  A  +R  ++ V+ +D N  
Sbjct: 61  IDVSEN--RDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  L A C+QHELDHLNG LFIDHLS LKR  I KK  KL +L
Sbjct: 119 EIELEAADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166


>gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
 gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
          Length = 185

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V+ P+E+++  I  L+D+M E MY+ DG+GLAA QI VL R++VI
Sbjct: 1   MVREIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R+A + VR +D + + 
Sbjct: 61  DTSPRQEGQKLIHLVNPEIVRAEGETTWTEG-CLSIPGEAEDVARAAKVWVRALDYHGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + AD LLA  +QHE DHLNG LF+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167


>gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 173

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+++  P+ +I  +I  L  +ML  MY   G+GLAA Q+GVL RL V
Sbjct: 1   MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60

Query: 61  IDLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D +      +NP+V +NP++   S+  + Y+EGCLSIP+  ADV R A + VR++  + 
Sbjct: 61  MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +      +GL ATC QHE+DHL+G LFIDHL  +KR MIT+KM KL + R
Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170


>gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 185

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R A + VR +D   + 
Sbjct: 61  DTSPRQEGQTLLHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDRQGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
 gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
          Length = 171

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 91/170 (53%), Positives = 125/170 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR VS+P+E I+S I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  S++ ++Y+EGCLSIP+Y A+V+R  ++ + Y D   +
Sbjct: 61  LDISSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K  + ++
Sbjct: 121 QAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKKQN 170


>gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 168

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 170

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+M   MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I   S +  V  EGCLS+P     V+RS  + VR +D + Q
Sbjct: 61  IDVSEERDT--PLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 PRVIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168


>gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4]
 gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4]
          Length = 167

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  R+VV
Sbjct: 1   MAILNILHYPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+         +  CLS+P+    V R+A ITVRY+D   Q
Sbjct: 61  IDISEDKSS--PLVLINPEIVARRGKAESDEG-CLSVPEIFEPVTRAAEITVRYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A  LLATC+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 EQELEAQELLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165


>gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup]
 gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup]
          Length = 178

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/172 (50%), Positives = 123/172 (71%), Gaps = 2/172 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+++++S +  L D+MLE MY+  GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+       RK P V INP+I+  SD+ ++Y+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K  K  + ++
Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKKRAKEKN 172


>gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242]
 gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242]
          Length = 188

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 121/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR+VS P+E+I+++I  L+D+MLE MY+  GIGLAA+Q+ V  R+VV
Sbjct: 1   MALLPIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P+  INP+II  S++ S YQEGCLS+PDY  DVKR A + VR++D + Q
Sbjct: 61  VDIGKTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q   A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK  +  +
Sbjct: 121 TQEFDAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARFDE 170


>gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 168

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMV INP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 171

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q
Sbjct: 61  IDVSEE--RDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + +
Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167


>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 168

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +
Sbjct: 61  MDLSEDRSE--PRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 167


>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
 gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 168

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040]
          Length = 174

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ D+  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V +MD +  
Sbjct: 61  DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 185

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR+ +RP+E+++  I  L+D+MLE MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+ FINP+++       + +  CLS+P +   V R+  +TV  +D + +
Sbjct: 61  IDVSEGHDT--PLCFINPRLVAREGTEQMDEG-CLSVPGFFETVTRAERVTVEALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL+G LF+DH+S LKR  I  K+ K  + R
Sbjct: 118 PFKLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEKQRKER 166


>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 176

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 97/159 (61%), Positives = 123/159 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP+LR VS+PIE+I++D+  LID+MLE MY   GIGLAAVQI V  RL+V
Sbjct: 5   MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+II  S   S Y+EGCLSIPDY A+V+R A +TV+ +D + +
Sbjct: 65  IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+ 
Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMVI 163


>gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
 gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
          Length = 170

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+ +P+V +PDP+L++ + P+ + N ++  L+D+M E MY   GIGLAA QIG+  RL V
Sbjct: 1   MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL    +    +V INP+II   +     +EGCLS+PD R  V R+  +TVR  + + +
Sbjct: 61  IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  + LL+   QHE+DHL+G+LFI  +S LKRD++ +++ K+ +  +
Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKMQRAGE 169


>gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099]
 gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti
           MAFF303099]
          Length = 176

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 121/158 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  ++  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158


>gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 182

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/169 (50%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++ D+  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 11  MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 71  DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179


>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 168

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSA--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 169

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +            IT  D  ++ +EGCLS+P   A V+R+  ITV+ +D N +
Sbjct: 61  MDVSEDQNEPR---VFINPEITRKDGSTISEEGCLSVPGNYAKVERAEAITVKALDQNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15]
          Length = 167

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MILEILEYPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINP++     +    QEGCLS+P +  DV+R     +R MD + + 
Sbjct: 61  DLSEDKSE--PRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + A GLLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K  +
Sbjct: 119 FELEAKGLLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEKQHK 164


>gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 172

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297]
 gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297]
          Length = 169

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++PIEK++ +I  L D+MLE MY   GIGLAA Q+    RL+V
Sbjct: 1   MALLDILEFPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +   P + INP+     +D    +  CLS+P Y   V RS  I+VR ++ +  
Sbjct: 61  VDVSEDQND--PHILINPEYDRLGEDIEYQEG-CLSVPGYYEKVSRSDRISVRALNRDGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A  L A C+QHE+DHL+G LF+D+LS LKR  I KK+ K  + 
Sbjct: 118 AIEFEATDLFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQHKQ 165


>gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46]
          Length = 173

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/167 (47%), Positives = 109/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+Q+G   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       + P+V I+P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167


>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
 gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
          Length = 169

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L+ V+ P+ + +  ++ L  +M E MY   G+GLAA Q+ V  R++V
Sbjct: 1   MALLPILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        VFINP+II  S +  VY+EGCLS+P     V+R   + VR  +   +
Sbjct: 61  IDVTDDKSGLT--VFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  D LLA C+QHE+DHLNG +F+++LS+LK+  I  KM K  +L+
Sbjct: 119 WFEIDCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167


>gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
 gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
          Length = 169

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 113/156 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ P P L++VS+P+EK++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL      K P  F+NP+I+  SDD + Y+EGCLS+P+Y  +V+R A + +RY++   +
Sbjct: 61  MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GL A C+QHE+DHL G+LFIDHLSRLKR+
Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156


>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 208

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+      + +LI +M + MY   G+GLAA QI V  +L+V
Sbjct: 30  MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+  S++ ++++EGCLS+P    +++R A +TVR +D N +
Sbjct: 90  IDVSE--QKNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANGK 147

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K  + 
Sbjct: 148 EFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLKEERE 195


>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 183

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+   +S++  L++NM + MY   G+GLAA Q+    ++VV
Sbjct: 1   MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  +  VFINP+II  S++ ++++EGCLS+P    +++R A +TVR  D + +
Sbjct: 61  IDVSEKRNELH--VFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K  + +
Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLKEEREQ 167


>gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
          Length = 169

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +            I   D  ++ +EGCLS+P   A V+R+  ITV+ +D N +
Sbjct: 61  MDVSEDQNEPR---VFINPEIIRKDGSTISEEGCLSVPGNYAKVERAESITVKALDQNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 SFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 185

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V+ P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R A + VR +D + + 
Sbjct: 61  DTSPRQEGQTLIHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDYHGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
 gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
          Length = 180

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S+P+E  ++++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 4   MAILPIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILV 63

Query: 61  IDLQD--------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           IDLQ+            + P VFINP    FSD+ SVYQEGCLS+P+  ADV R A +TV
Sbjct: 64  IDLQEADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTV 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + D + +H      GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL +
Sbjct: 124 DWQDEDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKLRK 178


>gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 176

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 121/158 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158


>gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583]
 gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583]
          Length = 182

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 6/176 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR +S+P+E I+S I  L D+MLE MY+  GIGLAA+Q+G+  R++V
Sbjct: 1   MPIKPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLV 60

Query: 61  ID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D      + +    ++P++ INP+I+  SD+ ++  EGCLSIP Y A+V+R   + +RY
Sbjct: 61  VDVSIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K  K  +  +
Sbjct: 121 RNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEKRAKENN 176


>gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476]
 gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476]
          Length = 178

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/172 (50%), Positives = 124/172 (72%), Gaps = 2/172 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+E++++ +  L D+MLE MY   GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDLQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+       +K P+V INP+I+  SD+ +VY+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K  K  + ++
Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKEKN 172


>gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 168

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB]
 gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB]
          Length = 167

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP L++V+ P+ K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +              +++  +     +EGCLS+P     V+R+  + V Y+D +  
Sbjct: 61  IDVSEDKSEL---QAFINPVLSRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLA CLQHELDHLNG +F+DHLS LK+  I  K++K  +
Sbjct: 118 QQTLAADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAKQAR 164


>gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581]
 gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ FPD  LR  +  +E ++ ++  L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D      P+V INP+     D+    QEGCLSIP+Y A+V R+  + ++ ++   +
Sbjct: 61  MDVSDDQSA--PLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K  +L
Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQKRHKL 166


>gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255]
 gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
          Length = 187

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 112/171 (65%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R+V 
Sbjct: 13  MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      ++      P VFINP+I++ S++ SVY+EGCLSIP+Y   V+R + + +R+ D
Sbjct: 73  MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +     A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K  +
Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAK 183


>gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 106/170 (62%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+T   +    +  CLS+P   ADV R+  I VRY+D 
Sbjct: 61  FMVIDVSEEKNA--PQVFINPEIVTRQGEQVYQEG-CLSVPGIFADVSRADAIAVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q   +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+ +
Sbjct: 118 QGQAHELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKMRK 167


>gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
 gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
          Length = 175

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y ADV+R A + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169


>gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 169

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +            IT  D  ++ +EGCLS+P   A V+R+  ITV+ ++   +
Sbjct: 61  MDVSEDQNEPR---VFINPEITRKDGSTISEEGCLSVPGNYAKVERAEAITVKALNEEGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165


>gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PM  INP+I+  SD+  + +EGCLS+P     V+RS  + V+ +D N  
Sbjct: 61  IDVSEERNE--PMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 177

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MIRPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVL 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D    +   + P+  +NP+++  S+D S Y+EGCLS+P+  ADV+R A + VR+   + +
Sbjct: 61  DCNKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K  + +
Sbjct: 121 EEEEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFKRAQ 169


>gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 174

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P++ +++ I  LI +M E MY  +GIGLAA QI V  RLVV
Sbjct: 1   MALLPILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P VFINP+I+  S +  + +EGCLS+P     V+R   + VR +D   Q
Sbjct: 61  IDVSE--GRDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +++  +GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM KL + 
Sbjct: 119 SRVVECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKLQRE 166


>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
 gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
 gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
           [Rhodopseudomonas palustris CGA009]
 gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
          Length = 175

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 170

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VFINP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFINPQIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYVDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q Q +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 HGQAQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 173

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDP+L++ + P+  +++ I  L+ +MLE MY+  GIGLAA Q+GV  R++V
Sbjct: 1   MAILPIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIV 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D    + A +      +    I  ++    ++EGCLS+P+    V R   + VR ++  
Sbjct: 61  VDVTYSEAAAQDGEPYCLANPEIIAAEGEITWEEGCLSVPESYGKVDRKEHVVVRGLNAQ 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            +   + A GL A CLQHE+DHL+G LFIDHLS LKR M
Sbjct: 121 GELVTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159


>gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 177

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I+PDP+L++ ++P+ K++     L+ +M E MYS +G+GLAA QIGVL R++V+
Sbjct: 1   MVREILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P+  INP+II    D +  +  CLSIP   ADV R+A +TV+++D + Q 
Sbjct: 61  DTTHSQPELKPVAMINPEIIAMEGDTTYNEG-CLSIPGEAADVDRAAVVTVKFLDPDGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q +  DGLL+  +QHE DHLNG +F+DH+S LKR+ I K+M +L   R+
Sbjct: 120 QTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168


>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 173

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++ +  + + +  +  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MSIRPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV +NP+I   SD+ + Y EGCLSIP+  A+V R A + V + D   
Sbjct: 61  MDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 TQYEAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169


>gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688]
 gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 166

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P++++N++I  LID+M E MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILNYPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  KN +       IT       Y+EGCLS+P    +V R+A +TV  +D N +
Sbjct: 61  M---DLSEAKNELRVFINPKITAKCGAQDYEEGCLSVPGIYENVTRAAEVTVEALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++ A GLLA C+QHE+DHL G +F+D+LS LK++ I  K+ K  + R
Sbjct: 118 PFVLEAQGLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKKRQRDR 166


>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
 gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
          Length = 176

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ PI+ ++++I  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++     P VFINPK+    +D   Y+EGCLS+PD    V R   + +  +D +  
Sbjct: 61  MDLSENNDS--PRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHLNG+LF+D+LSRLK+     K+ K ++ R+
Sbjct: 119 AFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168


>gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 169

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLPILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S+D  V +EGCLS+P     V+RS+ + V+ +D   Q
Sbjct: 61  IDVSEDRDT--PLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K  + 
Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166


>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 171

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++K++++I  ++++M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNILHYPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N  + +   +I  +   +  +EGCLS+P+ RA V R+ ++ ++ +D N +
Sbjct: 61  I---DVSESRNERLVLINPVILETSGETGIEEGCLSVPEQRAFVPRAKWVKIKALDVNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  D LLA C+QHE+DHLNG LFID+LS LKR  I +K+ KL +L+
Sbjct: 118 EFELETDDLLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166


>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 177

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RLVV+
Sbjct: 1   MIRSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D        + P+  INP+++  S+D S Y+EGCLS+P+  A+V+R A + VR+   + +
Sbjct: 61  DCNKQPEAPRRPIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K  + +
Sbjct: 121 EEEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFRRAQ 169


>gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T]
 gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 167

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V+ P+ +++ +I  LI +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I       V +EGCLS+P     V R+  + VR ++   +
Sbjct: 61  IDVSEDKSGL---MALINPEILERSGEQVCEEGCLSVPGIYEKVSRAERVKVRALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHE+DHL+G +F+++LS+LK   I  K++K  ++
Sbjct: 118 SFEFEADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAKKARI 165


>gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism]
          Length = 169

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ ++N  +  LID+M E MY   G+GLAA QI V  R+VV
Sbjct: 1   MAILEILEFPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  PMVFINP++     D   Y EGCLS+P +   V+R   I+V  +D + +
Sbjct: 61  IDVSED--KSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I  +GLLA C+QHELDHLNG LF+D++S  KR  I 
Sbjct: 119 SFTIKPEGLLAVCIQHELDHLNGKLFVDYISSFKRTRIR 157


>gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 169

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLPILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S+D  V +EGCLS+P     V+RS  + V+ +D   Q
Sbjct: 61  IDVSEDRDT--PLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K  + 
Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166


>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
 gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P+V INP++I      +  +EGCLS+P  RA V R+  I +R +D N +
Sbjct: 61  IDVSENRED--PLVLINPEVIEQCGS-TGIEEGCLSVPGSRALVPRAEQIKIRALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PD  L  V++P+E +++ I  L+D+M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MARLDILHYPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++ +       I         +EGCLS+P     V R+  +TVR +D + +
Sbjct: 61  I---DTSETRDALRVFINPEIVAQSGREESEEGCLSVPGVFDRVTRAERVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G +F+D+LS LKR+ I  K+ K  + 
Sbjct: 118 PFELEADGLLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLKQARE 165


>gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
 gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
          Length = 175

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 115/172 (66%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIEK+  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      +D      P +FINP+I++ S++ SVY+EGCLSIP+Y  +V+R A + +R+ D
Sbjct: 61  MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K  +L
Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172


>gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISDERNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 168

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYEMVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
 gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
          Length = 175

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 115/171 (67%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           ++ P VFINP+II  SD+ S+Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171


>gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b]
 gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++ +++ +  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+ ++ VR  D +  
Sbjct: 61  I---DVSESREERLVLINPELLEKGGETGIEEGCLSIPEQRAFVPRAEWVKVRAQDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL+G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 SFELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165


>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
 gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
          Length = 184

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++++ ++I  LI +M+E MY  +GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N  
Sbjct: 61  MDLSEDKDS--PRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 119 AIDEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069]
 gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069]
          Length = 175

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+     ++   ID+M E MY+  GIGLAA Q+ +  +  V
Sbjct: 1   MAILEILEFPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        +      I         +EGCLS P   A V+R+  I V+ +D + +
Sbjct: 61  IDVSDDKSEP---LVFINPQIVEKRGVEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +    LLA C+QHE DH+ G LF+D+LS LKR+ I K + K    
Sbjct: 118 PFEMDTGELLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEKQQNN 165


>gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 173

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK+++ I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNILHYPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    +      +  +EGCLSIP+ +  V R+  + VR ++ N +
Sbjct: 61  I---DVSESRSERLVLINPELIDKKGETGIEEGCLSIPEQQGFVARAEQVKVRALNYNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 LFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166


>gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 173

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 111/155 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P+E++++D+  L+D+MLE MY+  GIGLAA+QIGV  +++V
Sbjct: 1   MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  FINP+I+  S+D +VY+EGCLS+P++  DV+R A   VRY+D   +
Sbjct: 61  MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +    D LLATCLQHE+DHL GILFIDHLSR KR
Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155


>gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 170

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDVSD--SRDQPMVLINPQIIEKRGE-DGIEEGCLSVPGSRALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFNE 167


>gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 170

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
 gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
          Length = 184

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++++ ++I  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N  
Sbjct: 61  MDLSEDKDS--PRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 119 KIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 174

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P+  ++ D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60

Query: 62  DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP+I+  SD  +VY+EGCLSIP+  A+VKR   + VR++D +  
Sbjct: 61  DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  +KR MIT++M KL + +
Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKLKREQ 169


>gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110]
 gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+PIEK+ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      ++   +  P VFINP++I  S++ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK  K  +  +
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKRAE 174


>gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 173

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++   P+  ++  +  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V+R   + V ++D + 
Sbjct: 61  DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170


>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
 gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
          Length = 170

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+  +  ++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLDILKYPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I   SD    Y+EGCLSIP     V+R   +TV  +  + +
Sbjct: 61  IDITETHDQLQ--VFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHLNG LF  HLSRLK++ I +K+ K+ + R
Sbjct: 119 PFTLEADGLLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167


>gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster
           bacterium HF4000_37C10]
          Length = 185

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 121/181 (66%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +E+++ D+  L+D+MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D++               RKNPM F+NP+II  S + S+Y+EGCLS+P   A++ RS  
Sbjct: 61  LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             V+Y+D   Q +   A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K  +  
Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180

Query: 170 D 170
           D
Sbjct: 181 D 181


>gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
 gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
          Length = 175

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 170

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D +  
Sbjct: 61  IDVSEKRNE--PMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27]
 gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27]
          Length = 167

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAAVQ+ V  ++VV
Sbjct: 1   MAILNILHYPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I      +  +EGCLS+P+    V R+A ITV Y+D   Q
Sbjct: 61  IDISEDKSSP---LVLINPEIVARQGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q +    LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
          Length = 172

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P+++ PDP L++ + P+  ++ ++  L D+ML  MY   GIGLAA Q+GVL R++V+
Sbjct: 1   MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P++  NP+I+  SDD + Y+EGCLSIP+  ADV R A + VR++D + +
Sbjct: 61  DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRE 168


>gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 170

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D N  
Sbjct: 61  IDVSEKRNE--PMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 169

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+EKI+  I  LI +MLE M   +GIGLAA QI V  R+VV
Sbjct: 1   MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               IT  D  ++ +EGCLS+P+  A V+R+  ITV  +D N  
Sbjct: 61  IDVSEKQDNPQ---VFINPEITHMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis]
 gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I]
 gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50]
          Length = 170

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V INP+I   SD+   Y+EGCLS+P    +V+R+A I  + +D   Q
Sbjct: 61  IDVSEEGNDLR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                ADGLLA C+QHE+DHL+G +F+++LS LK++ I  K+ K  +  +
Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAEREAE 168


>gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B]
 gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B]
          Length = 180

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI +++E M    G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+                 +  S++     EGCLS+P     +KR+     +  +   +
Sbjct: 61  YDVDGVVGHLV------NPSLDLSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I+    LLA C+QHE DHL+G+LFID L   +R +  + + +
Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIRE 158


>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
 gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
          Length = 176

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L+++  P+  ++ D+  L D+MLE MY   GIGLAA Q+G+L+RL+V+
Sbjct: 4   MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D   QD+     P+V INP+I+  SD+ SVY+EGCLSIPD  ADV+R   + V ++D + 
Sbjct: 64  DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173


>gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
 gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
          Length = 168

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++ ++ ++  I  L+D+ML  MY   GIGLAA QI +  R+VV
Sbjct: 1   MTILQILEFPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VFINP+II        Y+EGCLS+P +   V R   I V+ +D +  
Sbjct: 61  IDVSE--TGDQPQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  +GLLA C+QHE+DHLNG LF+DH+S+LKR  I  K+ K  + 
Sbjct: 119 PFELQPEGLLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEKQHKQ 166


>gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 169

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P++KI+S I  L+ +MLE M   +GIGLAA QI V  R+VV
Sbjct: 1   MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               IT  D  ++ +EGCLS+P+  A V+R+  +TV+ +D N  
Sbjct: 61  IDVSEEQD---KPQVFINPEITHMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
 gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
          Length = 170

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +V INP+I   SDD+ +Y+EGCLS+P    DV+R++ I  + +D + +
Sbjct: 61  IDVSED--SNQLLVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKKAERE 166


>gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
          Length = 168

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSE--TRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167


>gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
 gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
          Length = 175

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q +   ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K  K  +
Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169


>gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999]
          Length = 169

 Score =  147 bits (370), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+  IN  I  L+ +M E M +  G+GLAA Q+ V  +++V
Sbjct: 1   MAVLTVLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D               +       + +EGCLS+P+  A V+R+ +I V  ++ + +
Sbjct: 61  MDVSDDQDTPL---VFINPKVIEQRGTKINEEGCLSVPNNYAKVERAEWIKVSALNEHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LF+D+LS LKR  I KK+ K  ++
Sbjct: 118 EFTMEAEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEKEARI 165


>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 176

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/170 (53%), Positives = 122/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LVI PDPILR VS+ +E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MSIKSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +
Sbjct: 61  VDIHSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 169

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++      +    IT        +EGCLS+P  R  V R+A ++V  +D N +
Sbjct: 61  IDVSEERNQPM---VLVNPKITEEHGEDGIEEGCLSVPTARGFVPRAAGVSVTALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 170

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 172

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++   P+  ++  +  L D+MLE MY+  GIGLAA QIG++ RL+V+
Sbjct: 1   MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+I+  S++ +VY+EGCLSIP+  A+V R   + VR++D +  
Sbjct: 61  DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16]
          Length = 168

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSE--TRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167


>gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 170

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++         +    I      +  +EGCLS+P  RA V R+ ++ VR +D + +
Sbjct: 61  IDVSENREDPL---VLINPEIIEQAGSTGIEEGCLSVPGSRALVPRAEWVKVRALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 AFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
 gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 171

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+  I      +ID+ML  MY  +G+GLAA Q+ +  R+VV
Sbjct: 1   MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   +  P++FINP+II  S++ S+ +EGCLS+P   A V R    TV+ +D + +
Sbjct: 61  MDTSEDNDQ--PIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A  L + C+QHELDHL G+LF+D+LS LKR  I KK+ K  +
Sbjct: 119 EFSLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165


>gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336]
 gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336]
          Length = 170

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K   + +    I  S   +  +EGCLS+P  R  V R   + V+  +   +
Sbjct: 61  I---DIEGTKENQIVLINPKILESFGETGIEEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL + 
Sbjct: 118 EFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165


>gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
 gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
          Length = 176

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/167 (45%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  PDP L++VS+P+E  +  DI  L+D+MLE MY   GIGLAA+QIGV  R++
Sbjct: 1   MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+DL        P  F+NP+I+   ++   Y+EGCLS+PD    V+RSA   +RY+D + 
Sbjct: 61  VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +    +A+ L A C+QHE+DHL G LFID+LSRLKRD    K+ K  
Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKKAK 167


>gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N]
 gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++V
Sbjct: 1   MALLPILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +       INP+I   S++  VY+EGCLS+P    +VKR+A I  + +D + +
Sbjct: 61  IDVSEDGNEL--RALINPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHE+DHL+G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 VFEFEAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKKAERE 166


>gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +V INP+I   SDD+ +Y+EGCLS+P    +V+R++ I  + +D + +
Sbjct: 61  IDVSEE--SNQLLVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PFEFDADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166


>gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT]
 gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K   + +    I  S   +  +EGCLS+P  R  V R   + V+  +   +
Sbjct: 61  I---DIEGTKENQIVLINPEILESFGETGIEEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL + 
Sbjct: 118 DFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165


>gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12]
 gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +V+D+ +  +   PMVFINP+I+T   D    +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVVDVSEEKNA--PMVFINPEIVTREGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003]
          Length = 178

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L+++  P+  ++  I  L D+MLE MY   G+GLAA QIGV+ R+ V
Sbjct: 3   MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62

Query: 61  IDLQDHAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D           MV INP+I   S++ +V++EGCLS+P+  ADV R   + +R++  + 
Sbjct: 63  MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q      DGL ATC QHELDHLNG LFIDHL  LKR M+T+K+ KL + 
Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKLKRE 171


>gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354]
          Length = 190

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 21/187 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS+P+E  + + D+  L+D+M E MY+ +GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60

Query: 59  VVIDLQDHAHRKNPMVF-------------------INPKIITFSDDFSVYQEGCLSIPD 99
           +VIDLQ       P+                     INP+I+  +++ + YQEGCLS+PD
Sbjct: 61  LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TVR+ D + +      +GLLATC+QHE+DHL GILFIDHLSRLKR M  
Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180

Query: 160 KKMSKLV 166
           KK+ KL 
Sbjct: 181 KKLKKLR 187


>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
          Length = 168

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L +V++P+E ++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP++   S++  V++EGCLS+P+    V+R   + VR +D   +
Sbjct: 61  IDISESRDELM--VFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL+G +F+++LS LK   I  K+ K V+ R
Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167


>gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
          Length = 170

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   PMVFINP+I+T   D    +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDVSEEKNV--PMVFINPEIVTKEGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 170

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++         +    I      +  +EGCLS+PD+RA V R+ ++ VR +D N Q
Sbjct: 61  IDVSENREDPL---VLINPEILEQAGSTGIEEGCLSVPDHRALVPRAEWVKVRALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 170

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217]
          Length = 172

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P+  ++  +  L  +M E MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+  +NP+I  FSD  SVY+EGCLSIPD  ADV R A + VR+MD +  
Sbjct: 61  DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + 
Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168


>gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14]
 gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++      +    IT        +EGCLS+P  R  V R+A ++V  +D + +
Sbjct: 61  IDVSEERNQPM---VLVNPEITEERGEDGIEEGCLSVPTARGFVPRAAGVSVTALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c]
 gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1]
 gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23]
 gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c]
 gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1]
 gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23]
 gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 170

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   PMVFINP+I+T   D    +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDVSEEKNV--PMVFINPEIVTREGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
 gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
          Length = 175

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 108/156 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+   R ++ ++ ++  LID+M + MY   G+GLAA Q+GV  R++V
Sbjct: 1   MAILPIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +  P+  +NP+I+  SD   +Y+EGCLS+P+  ADV+R++ + VRY+D +  
Sbjct: 61  VDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q I  +GLLA CLQHE+DH++G+LF+DH+S LKR+
Sbjct: 121 EQKIEGEGLLAVCLQHEIDHIDGVLFVDHISALKRN 156


>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
 gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
          Length = 167

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ +++  I  ++ +M + MY   GIGLAA Q  +  R+VV
Sbjct: 1   MAFLEVLRFPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +     +    IT  D  ++ +EGCLS+P+  A V R+  +TV+ ++ + Q
Sbjct: 61  IDVTEDKSDQL---VLINPEITKKDGSTISEEGCLSVPNSYAKVDRAETVTVKALNLDGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKRD I KK+ K  ++
Sbjct: 118 EFSLDADGLLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165


>gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 181

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L+++  P+ KI  +I  L ++MLE MY   GIGLAA Q+GV  +L+V+
Sbjct: 1   MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          PM   NP +   S+D S Y+EGCLS+P+  A+++R + + VR+   +  
Sbjct: 61  DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q  +  GL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL +
Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKLKR 167


>gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
 gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
          Length = 174

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+    V R+  + VR +D N  
Sbjct: 61  IDVSETRDQRL---VLINPELLDKSGETGIEEGCLSIPEQHGFVPRAEHVKVRALDYNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL ++R
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166


>gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
 gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+   +  I  L+ +M E MY   G+GLAA Q+ V  +++V
Sbjct: 1   MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +         +INP+II  S +  VY EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDTSETHTELR--AYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 QFELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166


>gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278]
 gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
           sp. ORS278]
          Length = 175

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           ++ P VFINP+II  SD+ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171


>gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149]
 gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149]
          Length = 175

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++++ P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+ V+
Sbjct: 4   MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63

Query: 62  DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP++I  SD+ +VY+EGCLSIP+  ADV R A + +R+MD +  
Sbjct: 64  DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q     GL ATC QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKLKRE 171


>gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130]
 gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130]
          Length = 193

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 123/186 (66%), Gaps = 18/186 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDPILR  S+ +E+++ ++   +D+M + MY   GIGLAAVQ+G   R+ V
Sbjct: 1   MALLPIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFV 60

Query: 61  IDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +D  + A                    ++P+  INPKI+TFSD+ S+Y+EGCLSIPDY A
Sbjct: 61  VDCSERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYA 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +V+R A   + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK 
Sbjct: 121 EVERPATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKF 180

Query: 163 SKLVQL 168
           +K+ + 
Sbjct: 181 TKIAKQ 186


>gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
 gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
          Length = 171

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLS+P+ RA V R+  ITVR +D + +
Sbjct: 61  IDISENRDQRL---VLINPELLQKGGETGIEEGCLSVPEQRALVPRAETITVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 169

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+  ++  +  LI +MLE MY   GIGLAA QI V  RL+V
Sbjct: 1   MALLPILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P+V INP+++  S +  + +EGCLS+P     V+R   +TV  +D   Q
Sbjct: 61  VDVSEERDA--PLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K  + 
Sbjct: 119 SRLIEAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLKSQRE 166


>gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +   +I         +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  I---DISETRDEPMVLINPVILEKRGEDGIEEGCLSVPGARALVARAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 118 EYTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167


>gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 167

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L R + P++ ++ D+  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I   D   V +EGCLS+P     V R+  +TVR +D N  
Sbjct: 61  IDISEDKSGL---MALINPQILERDGEQVCEEGCLSVPGVYEKVTRAERVTVRALDRNGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F+++LS LK   I  K++K  ++
Sbjct: 118 PFEVAAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAKKARI 165


>gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P+  +N+D+  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+  + VR +D +  
Sbjct: 61  I---DVSESREERLVLINPELLEKSGETGMEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHELDHL+G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 SFELETDGLLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165


>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLSILHYPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V INP+I   SD+   Y+EGCLS+P    +V+R+A I  R +D +  
Sbjct: 61  IDVSEEGNELR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHELDHL+G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PYEAEAEGLLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKKAERE 166


>gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + ++    +  INP+I   SDD  +Y+EGCLS+P    +V+R++ I  + +D + +
Sbjct: 61  IDVSEDSNEL--LALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166


>gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
 gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
          Length = 175

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+E +++++  L D+M E MY   GIGLAA+Q+    RL+ 
Sbjct: 1   MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++      P  FINP++I+ S++ +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169


>gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 170

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLHYPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +   ++       +     +  +EGCLS+P+ R  V R   I ++ +D + Q
Sbjct: 61  IDVSEDRKQLLVLINPELLNES---GETGIEEGCLSVPEQRGFVPRFEQIKIKALDYHGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166


>gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14]
 gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14]
          Length = 175

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      ++      P +FINP+I++ S++ S Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K  +L
Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172


>gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 173

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P++K+++ I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +     +    +      +  +EGCLSIP+    V R+  + VR ++ N +
Sbjct: 61  IDVSETRDDRL---VLINPELLDKSGETGIEEGCLSIPEQHGFVPRAEQVKVRALNYNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573]
          Length = 169

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 199

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N  +   ID+M E MY   GIGLAA Q+   ++L+V
Sbjct: 30  MSLLKVLRFPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           IT        +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 90  MDLQDEVERPK---VFINLEITAKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGK 146

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L
Sbjct: 147 EFTLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARL 194


>gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
 gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
          Length = 173

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR V++P+EK+++ I  +ID+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N  + +    +   +  +  +EGCLS+P+    V R+  + VR ++ N  
Sbjct: 61  I---DVSESRNERLVLINPELLNKEGETGIEEGCLSVPEQHGFVPRAEKVKVRALNYNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 118 AFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179]
          Length = 171

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+EK++ +I   IDNM E MY  +GIGLAA Q+    R++ 
Sbjct: 1   MAILDVLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  SD  +  +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  IDVEGDKSNQL---VLINPEIVESDGETGIEEGCLSVPGFRGLVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A  LLA C+QHE+DHLNG++F+D+LS LKR+ I  K+ K  +  +
Sbjct: 118 PFTLEASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVKYKKQLE 167


>gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603]
 gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 169

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 171

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+      +  L+D+M + MY   GIGLAA QI    +++V
Sbjct: 1   MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +               I         +EGCLS+P   A V+R+  +     D    
Sbjct: 61  MDHSEDRSEPK---VFINPKIIEEKGHFTNEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LL+ C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165


>gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015]
 gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+  +P+E+++ ++   ID+M E MY   GIGLAA+Q+    RL++
Sbjct: 1   MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ +     NP+VFINP+II         +  CLS+P +  +V+R+  I V+ +D + +
Sbjct: 61  TDVSED--ASNPLVFINPEIIEADGVEVTQEG-CLSVPGFYENVERAEHIVVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  DGL A C+QHE+DHL+G LF+D+LS LKR+ I
Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155


>gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 173

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I+P P+L++ +RP+ K++  +  L+ +M E MY+ DG+GLAA Q+G+L R++V+
Sbjct: 1   MVREILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P+  INP+I+      +  +  CLSIP    DV R+A +TV+++D + Q 
Sbjct: 61  DTTPRQPDSKPLAMINPEIVGMEGATTYTEG-CLSIPGEAEDVDRAAIVTVKFLDVDGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q +  D LLA  +QHE DHL+G +F+DH+S LKR++I K+M +L   R+
Sbjct: 120 QTLTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168


>gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
 gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
          Length = 180

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR  S+P+E ++ ++  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   +  P  FINP+II  S +  VY+EGCLSIP+Y A+V+R A + +RY D +
Sbjct: 61  MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K  K  +
Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169


>gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113]
 gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113]
          Length = 167

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  ++VV
Sbjct: 1   MARLNILHYPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I      +  +EGCLS+P+    V R+A ITV Y+D   Q
Sbjct: 61  IDISEDKSSP---LVLINPEIIARQGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q +    LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 181

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+ +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++D               +  S+D    +EGCLSIP       R+     +  +   +
Sbjct: 61  YCVEDRLGHLV------NPTLDLSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +    LLA C+QHE DHL+GILFID +   +R        KL++  +
Sbjct: 115 PITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAM----KLIRQAE 160


>gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1]
          Length = 167

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + + P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               I         +EGCLS+P     V R+  + VR +D   +
Sbjct: 61  IDVSEDRSTL---RAFINPEILEKSGEQTCEEGCLSVPGVYEKVTRAERVKVRALDERGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F+++LS LK   I  +++K  ++
Sbjct: 118 PFELEAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAKKARI 165


>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 172

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L+++  P+  ++  +  L D+MLE MY+  GIGLAA QIGV+ RL+V+
Sbjct: 1   MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II+ S++ +VY+EGCLSIPD  A+V R   + V+++D N  
Sbjct: 61  DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586]
 gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586]
          Length = 169

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+  D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKAQDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKVKRFNE 167


>gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 171

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PD +L  +S PI  ++ +I  L  +M E MY+  G+GLAA Q+G+  RL+V
Sbjct: 1   MSLLKIYHYPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +         +    D     +EGCLS+P Y A VKRS+++ VRY+D + Q
Sbjct: 61  LDCGGEENPELIKAVNPEILERQGDSCE--EEGCLSVPGYYAAVKRSSWVKVRYVDMDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C QHE+DHL+G LF+D LS LK+ M  KK  K+++ +
Sbjct: 119 TVEREAEGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILEQQ 167


>gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB]
 gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+  + VR +D +  
Sbjct: 61  I---DVSESREERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z]
 gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z]
          Length = 183

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+ + N ++   ID+M + MY  +GIGLAA Q+ V  R++ 
Sbjct: 13  MALLNVLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVIT 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      KN  + +    +  S+  +  +EGCLS+P +R  V R   ITV+ ++   +
Sbjct: 73  IDISGE---KNEQLVLINPELLDSEGETGIEEGCLSLPGFRGFVPRKEKITVKALNRYGE 129

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K  + 
Sbjct: 130 EFTLHADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVKYQRQ 177


>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR++++P+E  +  +  LI++M + MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+          + I    I  S     ++EGCLS+P     V R+  +TV+ +D   +
Sbjct: 61  IDIVGDKK---EQIVIVNPEIVSSHGEKEFEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  +GLLA CLQHE+DH+NG LF+D LS LKR M  +K+ K  +L+
Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166


>gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 173

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PD  LR+ + P+  ++  +  L+D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 1   MSLLNILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D+ +       P++  NP+II  SD+ +  QEGCLSIPD  ADV R   + VRY+D + 
Sbjct: 61  MDIAERKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + + + ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+ + +
Sbjct: 121 EVRELDADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKMQRNK 170


>gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+++++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +     + +V INP+I+  SD+  VY+EGCLS+P    +V+RSA I VR ++   +
Sbjct: 61  IDVSED--GNDLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHELDHL G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 PYEFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRKQERE 166


>gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 180

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+PDP+LR  +  +   ++D+  L+D+M++ M+  +G GLAA Q+GV  R+ V
Sbjct: 1   MSVLPIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          INP      D+     EGCLSIP+      R   +    +D + +
Sbjct: 61  FGC-----GGREGHIINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    +LA C+QHE DHL+G+LF+  L    R    K + 
Sbjct: 116 SLAIEGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIR 158


>gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1]
 gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1]
          Length = 190

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 105/188 (55%), Gaps = 21/188 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N ++  L ++M E MY   GIGLAA+Q+GV  RL
Sbjct: 1   MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDF-------------------SVYQEGCLSIPD 99
           +VIDLQ       P+   +                             S Y EGCLS+P+
Sbjct: 61  LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TV+Y D +  H     +GLLATCLQHE+DHL GILFIDHLSRLKR+M  
Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180

Query: 160 KKMSKLVQ 167
           KK+ KL Q
Sbjct: 181 KKLKKLRQ 188


>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65]
 gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
          Length = 171

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAILEILEFPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P VFINPK+     +    QEGCLS+P +  DV+R     +  +D N Q
Sbjct: 61  MDISEDRSE--PHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A GLLA C+QHE+DHLNG LF+D+LS  KRD I KK+ K  +L
Sbjct: 119 PYELEARGLLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEKQHRL 166


>gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202]
 gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305]
 gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202]
 gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+  ++ ++   ID+M + MY  +GIGLAA Q+ VL R++ 
Sbjct: 1   MAVLEVVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEIIESSGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +  ADGL A C+QHE+DHLNGILF+DHLS LKR  I +KM KL + 
Sbjct: 118 EVVYDADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKLKKQ 165


>gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++++PDP LR  + P+ +++  +  L+D+MLE MY   GIGLAA Q+G   R+ V
Sbjct: 1   MALLDILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  + + S  +EGCLSIP Y  DV R+  +  R +D +AQ
Sbjct: 61  IDVSEERDE--PLVLINPEILEATGEASG-EEGCLSIPGYYDDVARATRVRYRALDRDAQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+G LA CLQHE+DHL+G LFID+LS LKR  + K+M K  +L
Sbjct: 118 PIEGEAEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165


>gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341]
 gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341]
          Length = 190

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYRFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ +  R++V
Sbjct: 1   MPILQILHYPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    +N  + +    +   +  +  +EGCLSIP+ RA V R+  + +R +D N Q
Sbjct: 61  IDVSD---TRNERLVLINPELLEKNGKTGIEEGCLSIPEQRALVSRAEKVKIRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 SFELQADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166


>gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1]
 gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  I---DVSESREERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103]
 gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103]
 gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++++N+D+  ++D+M E MYS +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +    LLA C+QHE+DHL+G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR+ ++P+ +I+ +I  LID+M E MY+  G+GLAA QIG  +R+ +
Sbjct: 1   MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+       N +VFINP+I+      +  +  CLS P    D+KR+  +TVR    +  
Sbjct: 61  VDIAADDEPSNLLVFINPEIVRQEGQLTGPEG-CLSFPGISEDIKRAERVTVRARGRDGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLA  +QHELDHL+G+L ID +  LK+ ++ +KM K
Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163


>gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 172

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L +V++P+  +++ +  L+ +MLE MY ++G+GLAA Q+ V  RL V
Sbjct: 1   MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      +  PMVF+NP+I+  S++  +++EGCLS+P     V R+A +TVR +D    
Sbjct: 61  MDTSPEHDQ--PMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I  DGL A C QHE+DHL+G +F+++LS LKR+ I  KM+K  + 
Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAKRTRE 166


>gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506]
 gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506]
          Length = 182

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/178 (50%), Positives = 127/178 (71%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S PI ++++ +  ++++M E MY   GIGLAAVQ+G+  R++ 
Sbjct: 1   MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60

Query: 61  ID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D         +    +KNP+  INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V
Sbjct: 61  VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++
Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178


>gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISEN--RDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
 gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
          Length = 167

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++ ++  I  L+D+M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +  +     VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +  + Q
Sbjct: 61  IDTSEDKNALQ--VFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL +
Sbjct: 119 PFELECEGLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKLER 165


>gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187]
 gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187]
          Length = 167

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ PIEKI SD+ ++I++M E MY  +GIGLAA Q+ +  RLVV
Sbjct: 1   MATLDVLRFPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  ++  +           +      +  +EGCLS+P+ RA V R+ +I VR +D + +
Sbjct: 61  VDTSENRDQPM---VFINPELIEKRGETGIEEGCLSVPECRAFVPRAEWIKVRALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADGLLA CLQHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFEIEADGLLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARN 165


>gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E]
 gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E]
          Length = 171

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ ++ P+ + N ++   ID+M E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MSVLNVLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+          + +    +   +  +  +EGCLS+P  R  V R   +TV+ ++   +
Sbjct: 61  IDITGEKT---EQLVLINPELLDGEGETGIEEGCLSLPGLRGFVPRKEKVTVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL + 
Sbjct: 118 EFTLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKLQKQ 165


>gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 169

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++  +I  ++D+M + MY+ +GIGLAA Q+ V  R++V
Sbjct: 1   MAVLQVLHFPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +  SD  +  +EGCLS+P++RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLSSDGETGIEEGCLSVPEHRALVPRAERVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + +
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ +P P L   + P+   N  I  L+++M E MY+  G+GLAA Q+G+L R+VV
Sbjct: 1   MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        VFINP+II    D   ++EGCLS+      VKR   + V   +   +
Sbjct: 61  IDITDDNSDLL--VFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   GLLA C+QHE+DHLNGI+FIDHLS+LK+     K+ KL + 
Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKLRRE 166


>gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 166

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++ FPDP+L++ S P+  I  +I+ L  +M E MY   G+GLAA QIGVL R++VI
Sbjct: 1   MIRPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +  INP +I   +  +  +EGCLS+PD+ A+VKR   + V+ +    Q 
Sbjct: 61  DVAAKNEPPQLITAINPVVI-HGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +I +ADGLLA   QHE+DHL+GILF+D LS LKRD+  KK  K
Sbjct: 120 RIWHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162


>gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 189

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  LI +M E M   DG+GLAA Q+GV  ++  
Sbjct: 1   MAILEIRIMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + +          INP +     +     EGCLS+P     V+R     VR MD N  
Sbjct: 61  YRIGE-----LSGHVINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +I ADG+LA C+QHE DHLNG LFID L+   R    + + 
Sbjct: 116 PVLIEADGMLARCMQHETDHLNGKLFIDRLTGDDRRAAMRTIR 158


>gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3]
 gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3]
          Length = 170

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++ +     +++++  +M++ MY  +G+GLAA Q+ +  R+VV
Sbjct: 1   MALLDVLHFPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+II+ S +    +  CLS+PD  AD+ R+ F+TV++ D    
Sbjct: 61  IDVSDERDD--PIVLINPEIISQSGEECSQEG-CLSVPDINADITRAEFVTVKFQDVQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q I AD LLA C+QHELDHL G LFID+LS  K+  I  K+ KL +  +
Sbjct: 118 AQQIEADSLLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKLQRQNE 167


>gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 183

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 14  MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 74  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 130

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 131 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 180


>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 173

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY   GIGLAA Q+ V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II  SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSEERNE--PLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+GLLA C+QHELDHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQRE 166


>gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli]
 gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli]
          Length = 168

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PD  LR  +  I   ++ +  LID+M E MY+  GIGLAA QI +  +L V
Sbjct: 1   MAIYPIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++         +    I      ++ +EGCLS+P       R+ ++ ++ +D N +
Sbjct: 61  IDVTNNKSHTL---CLINPTIVEKKGEALLEEGCLSVPGIYDKAPRALWVKLQALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I A+GLLA C+QHE+DHLNG LF+DHLS LK+ +  KK+ K+ + R
Sbjct: 118 PYEIEAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166


>gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814]
 gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814]
          Length = 181

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 105/157 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  P+P+L+ VS+P++ +  +I  L+D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D     NP  F+NP+I+   +    Y EGCLS+P+    ++R   + ++Y++   +
Sbjct: 61  MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             I +A+GL ATC+QHE+DHL G LFID+LSRLKR  
Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKRTR 157


>gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 170

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++PI + N+++   IDNM E MY   GIGLAA Q+   ++L+V
Sbjct: 1   MSLLKVLRFPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 61  MDLQDDVERPK---VFINLEIIEKSGDFCNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLEADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
 gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
          Length = 174

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR+V++ IEK++ +I ++ID+M E MY   G+GLAA Q+ V  RL V
Sbjct: 1   MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +            IT ++      EGCLS P   A V+R+  ITV  +D N +
Sbjct: 61  SDCSEDQNEPL---VFINPEITEAEGHFKNDEGCLSFPGVYAKVERAERITVTALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L +
Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLAE 167


>gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 177

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 1/170 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + + I+PD +L++ +  + + N ++  L+++M E MY   G+GLAA QIG+L ++VVI
Sbjct: 1   MIREIRIYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVI 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       +    + +    I   +   V +EGCLS+P     VKR+A+  V+  +   +
Sbjct: 61  DLHSGKEKQGKEQIILINPEIVALEGEEVKEEGCLSLPGLYKKVKRAAYAKVKAQNLKGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             II  +GLLA   QHE+DHLNGI+FID LS L+R +  +K  KL +  +
Sbjct: 121 EFIIEGEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKLKRKYE 170


>gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 170

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+D+   IDNM + MY   GIGLAA Q+     L++
Sbjct: 1   MSLLKVLRFPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           IT  D     +EGCLS+P   A+V R+  +T++  D    
Sbjct: 61  MDLQDDVERPT---VFINMEITARDGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGV 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLDADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 263

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 17/183 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           I          D +D            NP + +    +       V +EGCLS+ DY + 
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+ 
Sbjct: 192 VKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251

Query: 164 KLV 166
           K++
Sbjct: 252 KII 254


>gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B]
          Length = 167

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+ +    + + ID+M E MY  +GIGLAA Q+    RL+V
Sbjct: 1   MPLLKVLRFPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+  ITV+ +D N  
Sbjct: 61  MDLQDEVERPK---VFINPEIVAKSGDFCNEEGCLSVPGVYAKVDRAELITVKALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADGLFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKAARN 165


>gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165]
 gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165]
          Length = 170

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L +V +P+E +++++   IDNM + MY  +GIGLAA Q+ VL R++ 
Sbjct: 1   MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP  RA V R   +TV+ ++   Q
Sbjct: 61  IDIEGDKTNQI---VLINPEILESSGETGIEEGCLSIPGCRALVPRKEKLTVKALNREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNG+LF+DH+S+LKR  I +KM KL + 
Sbjct: 118 TFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQ 165


>gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           I          D +D            NP + +    +       V +EGCLS+ DY + 
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR   + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+ 
Sbjct: 192 VKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251

Query: 164 KLV 166
           K+ 
Sbjct: 252 KIS 254


>gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 170

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395]
 gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27]
 gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27]
 gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121]
 gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR V++P+   N  +   ID+MLE MY  +G+GLAA Q+    RLVV
Sbjct: 1   MAVLPVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   + +PMVFINP+     D  +  QEGCLS+P +   + R+A + V  +D N  
Sbjct: 61  MDFSEE--KNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  GLLA C+QHE+DHL+G L +D+LS LKR+ I  K+ K  +
Sbjct: 119 EFEKKVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVKNQK 165


>gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756]
 gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756]
          Length = 173

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     +L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   
Sbjct: 1   MAIRRILTVDNAADLAVLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++ +DL        P  F+NP+I+  S++  VY+EGCLS+P+Y  +V+R A +T+RYM+
Sbjct: 61  RVITMDLAREGEEPAPRYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +  A+GL A C+QHE+DHL G+LFIDHLSRL+RD    K+ K  +
Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKKARR 171


>gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 173

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 170

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  +A V R+A +TV+ +D +  
Sbjct: 61  IDVSE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGSQALVPRAAEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYQFDADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 172

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDVSD--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 182

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA QIGV  R+  
Sbjct: 1   MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP +    +     +EGCLS P       R+     +  +   +
Sbjct: 61  Y-----NVDGQLGHLVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    L+A CLQHE DHL+GILFID ++   R +  K + +
Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIRE 159


>gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36]
 gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36]
          Length = 167

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  L+++++P+++I      +ID+MLE MY+ +GIGLAAVQ+ +L R+VV
Sbjct: 1   MAILEVLHFPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +   ++T     +  +EGCLS+P+ RA V R+  +TV  +D +  
Sbjct: 61  I---DVSGTRGEPLILINPVLTNKCGETGIEEGCLSVPESRAFVPRAESVTVTALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA CLQHE+DHLNG LFID+LS LK+  I KK+ KL + 
Sbjct: 118 EFTLEAHDLLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLARQ 165


>gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313]
          Length = 185

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 119/181 (65%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +++++ D+  L+++MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D+                RKNP+ F+NP+IIT S + S Y+EGCLS+P   A++ R   
Sbjct: 61  LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++Y+D   Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K  +  
Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180

Query: 170 D 170
           D
Sbjct: 181 D 181


>gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255]
 gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
          Length = 172

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 111/168 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+++ PDP L+++  P++ ++++   L D+M+E MY   G+GLAA Q+    R+ V
Sbjct: 1   MSLLPILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      P+V INP+II+ S++ + Y EGCLS+PD   DV+R   + + ++D + +
Sbjct: 61  MDCTDSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL + 
Sbjct: 121 QHNELFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKLKKE 168


>gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93]
 gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93]
          Length = 190

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
 gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
          Length = 172

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PDP L++   P+ ++  +I  L  +MLE MY+  G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       K P V INP +  +  D  S  +       +YRADV R + + ++  D +  
Sbjct: 61  DPAGKDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                     A  +QHE DHL+GILFID +SRL+R +   K+ K ++ ++
Sbjct: 121 GIEEDLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170


>gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114]
 gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114]
          Length = 175

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++ + P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+VV+
Sbjct: 4   MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63

Query: 62  DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P++  NP++I  SD+ SVY+EGCLSIP+  A+V R A + VR+MD +  
Sbjct: 64  DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q     GL ATC QHE+DHL+G LFID+L  L+R MIT+KM KL + 
Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKLKRE 171


>gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886]
 gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886]
          Length = 170

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+MLE MY  DGIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R++ +TV+ +D +  
Sbjct: 61  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRASEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LK+  I +K+ K+ +
Sbjct: 118 EYQFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKIKR 164


>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 178

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+ V+ P+  ++  +  L D+MLE MY+  GIGLAA Q+G++ R++V
Sbjct: 4   MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D   D      PMV INP++I  S D ++Y EGCLSIPD  A+V+R A + V +M+ + 
Sbjct: 64  MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + Q      L ATC+QHE+DHLNG LFID+L  L+R MIT+KM KL + 
Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKLKRE 172


>gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 179

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ DP+LR+   PI +I  ++  L  +MLE MY   G GLAA QIG   RLVV
Sbjct: 1   MAILPIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVV 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID  + D    +  ++F              Y EGCLS+P+   +V R   +TVR+ D N
Sbjct: 61  IDTAIPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDIN 120

Query: 119 AQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + Q I+  +GL A C+QHE DHLNG LF+D +S   R M   K+ K+ + 
Sbjct: 121 GEAQEIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAKE 171


>gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP]
 gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY   GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP YRA V R   ITV+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGYRALVPRKEKITVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I +AD L A C+QHE+DHLNGI+F+DH+S LKR  I  KM KL + 
Sbjct: 118 EVIYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKLKKQ 165


>gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 165

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 115/168 (68%), Positives = 144/168 (85%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV
Sbjct: 1   MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I      + K+P+VFINP I++ S+D SV  EGCLSIP++RADVKR++F+TV+Y+D NAQ
Sbjct: 61  I----DLNTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI  K+ KL++ 
Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIRN 164


>gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10]
          Length = 190

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
 gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +   D  +  +EGCLS+P+ RA V R+  I VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLQHDGEAGIEEGCLSVPEQRALVTRAENIKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 SFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +   D  +  +EGCLS+P+ RA V R+  I VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLQHDGEAGIEEGCLSVPEQRALVTRAESIKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
 gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++ P+   +  I  L+ +M E MY+  G+GLAA Q+ V  ++VV
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    KN  VFINP+I+  S+D  VY EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDVSDD--GKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 AFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166


>gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 213

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ I  DP+L R   P+E+ +  +  L+ +M   MY+ +G+GLAA QIGV  R+ V 
Sbjct: 8   TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++    +NP +     D        EGCLS+P    ++ R  +  V  +D +
Sbjct: 68  DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSAEGCLSVPGPHHELARPDYARVTGVDLH 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   +   G  A CLQHE DHL G L+ID LS+ +R  +  +M ++ + +
Sbjct: 128 GEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178


>gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25]
 gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 172

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01]
 gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01]
          Length = 172

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKIKRFNE 167


>gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5]
 gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5]
          Length = 171

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 102/167 (61%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PDP+L+++S+P+ + +S +  L+ +M + MY+ +G+GLAA QIG+L R+ V+
Sbjct: 1   MIHPILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +   + +    I   +  + ++EGCLS+P Y  ++KR   I V++ D   Q 
Sbjct: 61  DPASGKEEEAQPLVLINPQILSGEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q    DG  A   QHE+DHLNG LFI+HL   +RD+I +K+ K ++ 
Sbjct: 121 QTAILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMKE 167


>gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 173

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDQPMVLINPEILDKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 113/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P++ I+  +  L D+MLE MY   GIGLA  QIGV+ R++V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+V +NP++I  SD  + Y+EGCLSIPD  A+V R   + VR++  + +
Sbjct: 61  DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 DGL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + 
Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKLKRE 168


>gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P++ +   +  L  +MLE MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+V +NP+I  FS++ SVY+EGCLSIPD  ADV R A + +R+MD +  
Sbjct: 61  DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + 
Sbjct: 121 EHQEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168


>gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
 gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
          Length = 182

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+ +++E M+   G+GLAA Q+GV  R+  
Sbjct: 1   MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP +  FS++    +EGCLS+P    ++KR   +     + +  
Sbjct: 61  YHVDGEVG-----HLVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   GLL+ C+QHE DHL+G+LFID L    +    K + +
Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRLDPETKKAAMKAIRE 159


>gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4]
 gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 168

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  + P+ +  +++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVDRPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165


>gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++ +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
 gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++NS+I  ++D+M + MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165


>gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 167

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E+I  ++    +NM+E MY  +G+GLAA Q+    RLVV
Sbjct: 1   MALLEVLRFPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++      I   +I       + +EGCLS+P+  A+VKR+ F+T+ Y+D   +
Sbjct: 61  IDVSEQRNQAM---VIINPVIVEHSGEEISEEGCLSVPETNAEVKRAEFVTLEYLDIEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q++ ADGLLA CLQHE+DHLNG LFID+LS LK+  I  K+ KL +
Sbjct: 118 QQVLKADGLLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKLQR 164


>gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 168

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVERPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165


>gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
 gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP YRA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGYRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EVIYDADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165


>gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 206

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 38  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 97

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 98  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 154

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 155 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 204


>gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 169

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    IT        +EGCLS+P  RA V R+A ++V  +D N  
Sbjct: 61  I---DTSETRDQPMVLINPEITEKRGEDGIEEGCLSVPGARALVPRAAEVSVTALDRNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 TICFDADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKRHNE 167


>gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 170

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILGSCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165


>gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16]
 gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16]
          Length = 172

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 181

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  + + + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      D+     EGCLSIP    D  R   +  R  + + +
Sbjct: 61  YHCDGFAG-----HMVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    LLA C+QHE DHL+G++F+D L    R    +++ 
Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIR 158


>gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301]
 gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301]
          Length = 166

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P++++++ I  LID+M E MY   GIGLAA Q+    +L++
Sbjct: 1   MAILDILNYPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  K+ +       I        Y+EGCLS+P     V R+  +TV  +D N +
Sbjct: 61  I---DTSETKDHLQVFINPKIIEKSGVQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLL+ C+QHE+DHL G +F+++LS LKR  I  KM KL + +
Sbjct: 118 PFTLKAEGLLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTRHK 166


>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
 gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
          Length = 172

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P+PILRR S+ +++I+  ++ LID+M+E MY+  G+GLAA Q+GV  R++VI
Sbjct: 1   MVLKIVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      +   +  INP I+    +  + +EGCLSIP   A+V+R+A + V+ +D + + 
Sbjct: 61  DPSAGEDKSKLIKIINPVIVEADGE-VIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I A+ LLA   QHE+DHLNG+LFID LS  KR+ I K + K
Sbjct: 120 VEIEAEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKK 162


>gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385]
 gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385]
          Length = 190

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++DNMLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 170

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165


>gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114]
 gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114]
          Length = 171

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 109/157 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDPILR+ S  + K+++DI  L+DNMLE MY   GIGLAA Q+G+L +++V
Sbjct: 1   MSVLEILKEPDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P+   NPKII  SD+ S  +EGCLSIP Y A+V R     ++Y+D + +
Sbjct: 61  IDLAKEDEPKKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            Q I A+ LL+TC+QHE+DH +G+LFID+LS+LK+DM
Sbjct: 121 QQEIEAEDLLSTCIQHEVDHCDGVLFIDYLSKLKKDM 157


>gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  + P+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           I          D +D            NP + +    +       V +EGCLS+ DY + 
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+ 
Sbjct: 192 VKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251

Query: 164 KLV 166
           K+ 
Sbjct: 252 KIS 254


>gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK]
 gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E I  +I N++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSLLQVLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      +    IT        +EGCLS+P  RA V R+A ++V+ +D +  
Sbjct: 61  IDISEERDQPM---VLINPEITDKRGEDGIEEGCLSVPGSRALVPRAAEVSVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167


>gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +E           L+D+M E MY   GIGLAA Q+    R
Sbjct: 1   MALLPILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID  +      PMVFINP+I+         +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDTSEDKSA--PMVFINPEIVQSQGGRVYQEG-CLSVPGIYADVTRADTIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 EGRQQELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAKARR 167


>gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N+ +   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MSLLKVLRFPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 61  MDLQDEIDRPK---VFINLEIIAKSGDFCNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GL A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLEAEGLFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73]
 gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    ++ FPD  LR  + P++     +     L+D+M + MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLTILEFPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VF+NP+I+    +    +  CLS+P   ADV RS  ITVRY+D 
Sbjct: 61  FMVIDVSEEKNA--PHVFVNPQIVQREGEQVHQEG-CLSVPGIYADVTRSESITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K  +
Sbjct: 118 QGQSQELTTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVKARK 167


>gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+ K++  I  L+ +M   MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P   INP+++  S++  + +EGCLS+P     V+RS  I V+ +D N  
Sbjct: 61  VDVSEGRDE--PFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +II A+G  A C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 ERIIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168


>gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 166

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P++++N+ +  LID+M E MY+  GIGLAA Q+    +L++
Sbjct: 1   MAILDILNYPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  K+ +       I   D   VY+EGCLS+P     V R+  I V  +  + +
Sbjct: 61  V---DTSETKDQLQVFINPKILERDGEQVYEEGCLSVPGVYESVTRAEKILVEALGKDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM K  + +
Sbjct: 118 RFTLEAHGLLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLKQQRGK 166


>gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37]
          Length = 175

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V   +  ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D+     P+V  NP++I  SD+ +VY+EGCLSIP+  A+V+R   + V ++D + 
Sbjct: 61  DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL + R
Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170


>gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 109/167 (65%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ +++ I  L+ +ML  MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+I+  S +  V  EGCLS+P     V+R+A + VR +D   +
Sbjct: 61  IDVSEERNE--PLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +
Sbjct: 119 SRTIEAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQR 165


>gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N+ +   ID+M E MY   GIGLA+ Q+   ++L+V
Sbjct: 30  MSLLKVLQFPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 90  MDLQDDVERPK---VFINLEIVAKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGN 146

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L
Sbjct: 147 EFSLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARL 194


>gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134]
          Length = 168

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+++++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSE--TRDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK++ I  K+ K  + R
Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167


>gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)]
          Length = 194

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISEN--RDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305]
 gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305]
          Length = 201

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 35  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 94

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 95  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 152

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 153 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 199


>gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9]
 gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L+++++ ++ ++  I  ++++M E MY+ +G+GLAA Q+ +  R+VV
Sbjct: 1   MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +    +V INP+II  S++  +++EGCLS+P    +V+R + + V+ +D N  
Sbjct: 61  IDVSEERNDL--LVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F++ LS LK++ I  K+ K  + 
Sbjct: 119 AFEFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKE 166


>gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594]
 gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594]
          Length = 194

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 116/192 (60%), Gaps = 25/192 (13%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N D+  L+D+M E MY+  GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60

Query: 59  VVID-----------------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95
           +VID                        + +  + +P +FINP+II  +++ S YQEGCL
Sbjct: 61  LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           S+P+  ADV R    TV+Y D   +      DGLLATCLQHE+DHL GILFIDHLSRLK+
Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180

Query: 156 DMITKKMSKLVQ 167
            M  KK+ K+ Q
Sbjct: 181 QMALKKLKKMRQ 192


>gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 168

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR V++ + +++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II         +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSEERNE--PLVLINPQIIKKDGSTVS-EEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167


>gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937]
 gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937]
          Length = 169

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  ++VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAERVSVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLARQ 165


>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
 gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
          Length = 175

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+  LR    PIE IN +I  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60

Query: 61  ID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D       +D +  K PMVFINP+I   S++ + YQEGCLSIP    DV+R A + V +
Sbjct: 61  LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++   + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K  + 
Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174


>gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000]
 gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000]
          Length = 173

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +      L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   
Sbjct: 1   MAIRRILTVDNAADLATLKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++V+DL      K P  F+NP+I+  S+D   Y+EGCLS+P+Y  +V+R + +T+RYM+
Sbjct: 61  RVIVMDLAREGEDKAPRYFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +  A+GL A C+QHE+DHL G+LFIDHLSRL+RD    K+ K  +
Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAMAKVKKARR 171


>gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 168

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V
Sbjct: 1   MEQLTIIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q
Sbjct: 61  MDTSEE--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K  + 
Sbjct: 119 PFEMDADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLKRQRQ 166


>gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394]
 gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394]
          Length = 167

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  ++      +    IT  D  + ++EGCLS+P     V R+  +TV Y+D   +
Sbjct: 61  IDLSEEHNQLL---ALINPTITKKDGETTFEEGCLSVPGIYDTVSRAETVTVEYLDTEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLA C+QHELDHL G LF+++LS LK+  I  K+ K  + 
Sbjct: 118 PQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKKRQRE 165


>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 172

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY  +GIGLAA QI V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++  P+V INP+I   SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSEERNK--PIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I ADGLLA C+QHELDHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQRE 166


>gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 203

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 32  MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 91

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 92  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 148

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 149 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 198


>gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9]
 gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9]
          Length = 169

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++IFPD  LR +++P+E I  DI N++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      +    IT        +EGCLS+P  RA V R+A ++V+ +D +  
Sbjct: 61  IDISEERDQPM---VLINPEITDKRGEDGIEEGCLSVPGSRALVSRAAEVSVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFNE 167


>gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320]
 gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 171

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +K     +    +   +  +  +EGCLSIP+ RA V R+  + VR +D N Q
Sbjct: 61  IDISETRDQKL---VLINPELLDQEGDTGIEEGCLSIPEQRAFVPRAERVKVRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166


>gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10]
 gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola]
 gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1]
 gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92]
 gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003]
 gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10]
 gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92]
 gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola]
 gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004]
 gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038]
 gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003]
 gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 170

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDISENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116]
 gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116]
          Length = 172

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 194

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+  
Sbjct: 1   MAILNIRIIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R     V  +D N  
Sbjct: 61  YRI-----DGVEGHIINPVLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +GLLA C QHE DHL+GIL+ D L    R    + +  
Sbjct: 116 PVTVEGEGLLARCFQHENDHLDGILYTDRLEGEDRKSALRSIRN 159


>gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33]
 gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33]
 gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236]
          Length = 194

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
 gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
          Length = 181

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 9/177 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PDP LR  ++P+   +  +  ++ NM E MY   GIGLAA Q+ +  RL+V
Sbjct: 1   MAIYSILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIV 60

Query: 61  IDLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+                + +V +NP+I+  S++   Y+EGCLS+P+  A V R A IT
Sbjct: 61  MDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANIT 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           VRY D     Q   A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K ++ 
Sbjct: 121 VRYQDITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAKSLKN 177


>gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1]
 gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1]
          Length = 169

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +      +    IT        +EGCLS+P  RA V R+A ++V+ ++ + +
Sbjct: 61  IDISDTRDQPM---VLINPEITEKRGEDGIEEGCLSVPGARALVPRAAEVSVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K+ K+ +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKIKR 164


>gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
 gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
          Length = 169

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165


>gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISESRNE--PMVLINPEILEKHGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3]
 gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3]
          Length = 193

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 82  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 139 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 188


>gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISESRNE--PMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
 gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 190

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+L   +RP+ + +  +  L+D+M E M +  G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   +          V    +I     D    +EGCLS+P  +    R+ +  V  
Sbjct: 61  YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D + Q       G LA C QHE+DHL+G L+++ L+       +KKM K
Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLTGRHL-RASKKMLK 169


>gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 176

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD ILR  S+ +E ++ ++  L ++MLE MY+  GIGLAAVQIGVL RL+V
Sbjct: 1   MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q      KNP+V INP+I+T  D   V++EGCLSIP   A+V+R A + VRY+D   
Sbjct: 61  MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q      L AT +QHE+DHL G LFIDHLSRLKR ++ +K  KL + R
Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170


>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
 gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
          Length = 168

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I   D  ++ +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSEERDEPL---VLINPQIIKKDGSTISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164


>gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1]
 gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1]
          Length = 169

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
 gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
          Length = 168

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II         +EGCLS+P   A V R+  +TV  ++   +
Sbjct: 61  IDVSEERNE--PLVLINPQIIKKDGSTVS-EEGCLSVPHSYAKVDRAETVTVAALNEEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I+ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +
Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164


>gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586]
 gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586]
          Length = 169

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFELDADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARQ 165


>gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 194

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISE--TRDLPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
 gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P PIL   S P+  +  +I  L D+M E MY+  G+GLAA Q+G   RLVVI
Sbjct: 1   MLLEILKYPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  +  +NP I     +    +  CLS+ DYRA+VKR+A +TV   D +   
Sbjct: 61  DLSGPDKREERINLVNPVITKAEGEQEDDEG-CLSVRDYRANVKRAATVTVCATDLDGNP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  + +
Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167


>gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021]
 gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG]
 gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21]
 gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG]
 gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810]
 gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866]
          Length = 169

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
 gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
          Length = 174

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    +  ++  +  +EGCLSIP+ RA + R+  + VR +D N Q
Sbjct: 61  I---DVSETRDERLVLINPELLDANGDTGIEEGCLSIPEQRAFIPRAEHVKVRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165


>gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
 gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
          Length = 170

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++PD  L+ V++P+E++N  I  ++D+M E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K     +    I  S   +  +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  I---DVEGTKENQYVLINPEIIESCGETGIEEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL + 
Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKLQKQ 165


>gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
 gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
          Length = 170

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++  ++             +  +EGCLS+P+ RA V R   + ++ +D + Q
Sbjct: 61  IDVSENRDQRLVLINPELMNE---VGATGIEEGCLSVPEQRAFVPRFEQVKIKALDYHGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LKR  I +K+ K+ +LR
Sbjct: 118 QFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166


>gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4]
 gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4]
          Length = 172

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDVSE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1]
 gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1]
          Length = 167

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+  ++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +  +     VFINP+I+  SD   +Y+EGCLS+P    +V+R   + VR +D   Q
Sbjct: 61  IDTSEDKNELR--VFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL +
Sbjct: 119 QFELDCEGLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKLER 165


>gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20]
 gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW]
 gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20]
 gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW]
          Length = 169

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ K+N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 171

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K ++ FPDP L++  +P+  IN  +  L+ +M E MY   G+GLAA QIGV  R+VVI
Sbjct: 1   MIKKILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +V INP +I  +D  +  +EGCLSIP Y A+V+R   + V+ ++   + 
Sbjct: 61  DVTGKDEQPQLLVAINP-VIVHADGEAYEEEGCLSIPKYAANVRRHERVVVKALNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  +
Sbjct: 120 VTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRR 162


>gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 182

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   + ++ NL+ ++ + M    G G+AA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      ++     EGCLSIP    D +R   +  R  + + +
Sbjct: 61  YHCDGFAG-----HLVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    LLA C+QHE DHL+G+LF+D L    R    +++ 
Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREIR 158


>gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 182

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M++  G GLAA QIGV  R+ V
Sbjct: 1   MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +    A        INP      ++  V  EGCLSIP    D +R   +  R  D + +
Sbjct: 61  YECDGFAG-----HLINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q++    LLA C+QHE DHL+G+LF+D L    R    +++ +
Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIRE 159


>gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 174

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L+++  P+  +  ++  L D+ML  MY   GIGLAA QIGVL RL+V+
Sbjct: 3   MKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIVM 62

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++   +  P++  NP++I  SD  S Y+EGCLSIPD  ADV R A + VR++D +  
Sbjct: 63  DCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDGN 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                   L ATC+QHE+DHL+G LFID+L  L+R MIT+KM+KL + 
Sbjct: 123 EHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKLKRE 170


>gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH]
 gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH]
          Length = 216

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 50  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 110 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 168 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 214


>gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
 gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
          Length = 170

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 167

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V+RP+  ++  I  LID+M E MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        V      I      +VY+EGCLS+P     V RS ++ VR ++ N +
Sbjct: 61  IDVSEEKSALTAFV---NPEIVERRGDTVYEEGCLSVPGIYDKVHRSEWVRVRALNRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  DGLLA C+QHE+DHL+G +F+D+LS+LK+  I  KM K  +
Sbjct: 118 PFEIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164


>gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++ N +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668]
 gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a]
 gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b]
          Length = 179

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI++ I  LI +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +           +IT  +  + Y+EGCLS+P     V R+  +TV  ++ N +
Sbjct: 61  MDLSEERNEPR---VFINPVITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  + 
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKKRQRQ 165


>gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247]
 gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20]
          Length = 179

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 171

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP LR +S+P+   +  +  LID+M E MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIHKILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +     I    I  S+  S + EGCLS+P     V R+  +TV+ +D + +
Sbjct: 61  IDILGDKKNQI---VIINPEIIASEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I A+GLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K  + 
Sbjct: 118 PFEIKAEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKFKRQ 165


>gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264]
 gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 179

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSEDKNELR--VFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703]
          Length = 170

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155]
 gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185]
 gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195]
 gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223]
 gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155]
 gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185]
 gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195]
 gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223]
 gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678]
          Length = 170

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVERPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+   ++ I  L+ +M E MY   G+GLAA Q+ V  +++V
Sbjct: 1   MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R     +INP++I  S +  +Y EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDTSE--TRTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 QFELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERE 166


>gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+   
Sbjct: 40  AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 99

Query: 62  DLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +++          INP +      T   D    +EGCLS P Y   +KR+ ++TV  +D
Sbjct: 100 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 159

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 160 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206


>gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568]
 gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568]
          Length = 169

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+A + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAAAVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP++          D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHL+G L+++ L++ K     KK+ K
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK-KWTSRMKKVVK 168


>gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 180

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 12/179 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++I PD  L +VSRP+E  ++ ++  LI +M + MY   G+GLAA Q+G L R+ 
Sbjct: 1   MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60

Query: 60  VIDLQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           V D                      V+INP+ +  SD+   ++EGCLS+P+   DV R A
Sbjct: 61  VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +R+ D +        DG  A  LQHE DHL+G LFID+LS LKR MITKKM KL +
Sbjct: 121 ALRLRWFDEHGVQHEQDFDGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179


>gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+ + N+ +   IDNM E MY   GIGLAA Q+    +L++
Sbjct: 1   MSLLKVLRFPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   AD++R+  +T++ +D +  
Sbjct: 61  MDLQDEEERPK---VFINLEIVASSGHFSNEEGCLSVPGIYADIERAEHVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA CLQHELDHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLEADGLLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 171

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +++RP+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MSLLPILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+I+  S++  V  EGCLS+P     V+R A + V  +D N Q
Sbjct: 61  IDVSEERND--PLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                ADGLL+ C+QHE+DHL G +F+++LS LKR+ I  KM  + + RD
Sbjct: 119 RYEFEADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKM--IKRGRD 166


>gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L  V  P+E+++  +   ID+M E MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESSGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             II AD L A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKLKKQ 165


>gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
 gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLQVLHYPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  I +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKIKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165


>gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
 gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  I   E        L+DNM + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+         +  CLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 DGQQQELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 165

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PD +L++ +  I +IN D+  LIDNM+E MY+ +GIGLAA Q+GVL RL+V
Sbjct: 1   MAILEIKKYPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++ +V INP+ IT S+   + +EGCLS+P +   +KR   + V+ +D N +
Sbjct: 61  VDTSPREQNQSLIVLINPE-ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I A GLLA  LQHE+DHL+GIL ID +S LKR++  KK  
Sbjct: 120 EIEIEATGLLARALQHEIDHLDGILLIDKISPLKRELFRKKFK 162


>gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 167

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21]
 gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21]
          Length = 188

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 114/186 (61%), Gaps = 19/186 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS P+ + + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                       +K P VF+NP+I+  ++D + YQEGCLS+PD  
Sbjct: 61  IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           ADV R A   VRY D   +      +GL+ATCLQHE+DHL GILFIDHLSRLKR+M  KK
Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180

Query: 162 MSKLVQ 167
           + KL +
Sbjct: 181 LKKLRE 186


>gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 202

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 33  MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 92

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 93  IDISESRNE--PMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 149

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 150 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 199


>gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
 gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  D LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELETDDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 167

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEEKNELR--VFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 TFEIDCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 175

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP++I  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 167

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++ +  ++  +  +I +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MATLEVLRFPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II         +EGCLS+P+  A V R+  +TV  ++   +
Sbjct: 61  IDVSEERNE--PLVLINPQIIKKDGTTVS-EEGCLSVPNSYAKVDRAETVTVAALNEQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167


>gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
 gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
          Length = 170

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 198

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V  PI     ++  LI++M + MY + G+GLAA Q+G+  RL V+
Sbjct: 1   MILPIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVV 60

Query: 62  DLQ------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KII+      ++ EGCLSIP    DV R   
Sbjct: 61  DTIGFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D           GL+A  +QHE DH  G LF D+LS  K+ ++  K++ +   +
Sbjct: 121 IEIEYQDEQFNIHRETFSGLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNISNGK 180


>gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 181

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 15  MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 75  IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179


>gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 173

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDVSE--TRDQPMVLINPEILDKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKIKRFNE 167


>gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15]
 gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15]
          Length = 167

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+PIL++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R   +V INP  +  ++  S  +EGCLS+P Y A+V R A + V+ ++ + + 
Sbjct: 61  DVSQREERPELIVCINPVFV-HTEGESYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               A+GLLA   QHE+DHL G+LF+DHLS LKR+M  KK  ++V+ 
Sbjct: 120 VTYRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVEE 166


>gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315]
          Length = 167

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD    Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 248

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+   
Sbjct: 60  AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 119

Query: 62  DLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +++          INP +      T   D    +EGCLS P Y   +KR+ ++TV  +D
Sbjct: 120 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 179

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 180 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226


>gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
 gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson]
 gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson]
          Length = 169

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLS+P+ RA V R+A + +R +D + +
Sbjct: 61  IDISNNRDQRL---VLINPELLEKSGETGIEEGCLSLPEQRALVPRAANVKIRALDFDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 204

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA QIGV  R+  
Sbjct: 1   MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D    + EGCLSIP     V+R     V  +D +  
Sbjct: 61  YRI-----DGVEGHIINPVLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +G+LA C QHE DHL+G+L+ D L    R    + +  
Sbjct: 116 PVSLEGEGMLARCFQHENDHLDGVLYTDRLEGEDRKAALRSIRN 159


>gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99]
 gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+ +   I+NM E MY   G+GLAA Q+    +L++
Sbjct: 1   MSLLKILRFPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P + AD++R+  +T++ +D +  
Sbjct: 61  MDLQDEEERPK---VFINLEIVASSGHFSNEEGCLSVPGFYADIERAEHVTIKALDRDGI 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLDADGLFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222]
 gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    IT        +EGCLS+P  RA V R+A +TV+ +D    
Sbjct: 61  I---DISETRDEPMVLINPEITDKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98]
 gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14]
 gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91]
 gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9]
 gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210]
 gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894]
 gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112]
 gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215]
 gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 167

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 183

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  +  +   + ++  L++++ E M+   G GLAA Q+GV  R+  
Sbjct: 1   MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          + P            +EGCLS+P    ++KR   +     +    
Sbjct: 61  FLDDDDEIDHLINPVLGPFSEEL----QDGEEGCLSLPGLSFELKRPERVLAIGQNMYGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G+++ CLQHE DHL+GILFID L R  +    K + +
Sbjct: 117 PVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIRE 160


>gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
          Length = 167

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175]
 gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVER---HKVFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 175

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5]
 gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 175

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P  F    I+         +     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031]
 gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+    P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165


>gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 181

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 15  MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 75  IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179


>gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591]
 gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLARQ 165


>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR   +P++K + ++  ++++M E MY+  G+GLAA Q+G+  RL +I
Sbjct: 1   MLLEILKYPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+    +            I   +     +EGCLS+P   A+V R+  +     D N   
Sbjct: 61  DISKEKNDL---KVFINPTILKKEGEICDEEGCLSVPGEYANVTRAEVVEAVAQDINGNE 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            II ADGL+A  +QHELDHLNG LF+D L   KR+ + K + +  
Sbjct: 118 FIIKADGLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKRRQ 162


>gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +N  + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSEN---RNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP++          D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHL+G L+++ L++ K     KK+ K
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK-KWTSRMKKVVK 168


>gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD   +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7]
 gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 175

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + + + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 170

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++++PD  L+ +++P+ ++N +I  ++DNM E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K     +    I  S   +  +EGCLS+P +R  V R   +T++ +D + +
Sbjct: 61  I---DVEGTKENQYVLINPEIIDSCGETGIEEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL + 
Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKLQKQ 165


>gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNIIHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +         FINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDISEDKSELR--AFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKLER 165


>gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi]
 gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi]
          Length = 179

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM   K  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKIKKQHE 178


>gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703]
 gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703]
          Length = 170

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAERVKIRALDKDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  DGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +  +
Sbjct: 118 PFELETDGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLDRQNN 167


>gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895]
 gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
 gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSETRDQRL---VLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDYNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L+
Sbjct: 118 SFELAADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166


>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
 gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
          Length = 175

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L   +  + + +  +  L  +M E MY   G+GLAA Q+    RL+V
Sbjct: 1   MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V +NP+++  S++   ++EGCLS+P     V R A + V+  D    
Sbjct: 61  IDITEEKNDLK--VLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  DGLLA C+QHE+DHL G +F+DHLS LK+  I  K+ K+ 
Sbjct: 119 FFELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKMR 164


>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
 gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
          Length = 184

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 13/183 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PD  LR+ + P+ +  + +  + DNM   MY   GIGLAA Q+ +  R+VV
Sbjct: 1   MPLLDILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVV 60

Query: 61  ID-----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D             D       +V INP+II  S++ + +QEGCLS+P   ADV+R A 
Sbjct: 61  MDVPERREDDETETPDAPIPHTKLVLINPEIIATSEETASWQEGCLSLPGQFADVERPAK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQ 167
           I   Y D         A+GLL  C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K  L +
Sbjct: 121 IRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAKSLLQK 180

Query: 168 LRD 170
            R+
Sbjct: 181 ERE 183


>gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13]
 gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13]
          Length = 169

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N+ I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+A + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAANVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEDKNELR--VFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10]
 gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10]
          Length = 164

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++    
Sbjct: 61  --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae]
 gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae]
 gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R ++   +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALNRYGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 187

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR  ++ +     ++  L+++M + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAILGIRIIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP +    D      EGCLSIP   A V+R   +     D    
Sbjct: 61  YQTGQERG-----HIVNPVLELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I  DGLLA C QHE DHL+GILF+D L   ++    + + 
Sbjct: 116 PVEIEGDGLLARCFQHETDHLDGILFLDRLEPEEKKAAWRTLR 158


>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 172

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L++V   +  I+  I +  D+MLE MY+  GIGLAA Q+GVL R++V+
Sbjct: 1   MKLKILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVL 60

Query: 62  DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       +  P+V +NP++I  SD+ +VY EGCLSIPD  ADV R   + V ++D +  
Sbjct: 61  DCVKEDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHL G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 LQKRDMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKLKRE 168


>gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48]
 gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48]
          Length = 178

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 9/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  P P+L++VS+P+E  +  ++  L+D+MLE MY   GIGLAA+QIG   R++
Sbjct: 1   MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60

Query: 60  VID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           V+D         +D    K P  F+NP+II  S++ S Y EGCLS+P+   +VKR A + 
Sbjct: 61  VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           ++Y++   +  I   DGL ATC+QHE+DHLNG+LFIDHLS+LKRD  
Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRDRA 167


>gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+D+   IDNM E MY   GIGLAA Q+   ++L+V
Sbjct: 1   MSLLKVLRFPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A+V+R+  +T++ +D    
Sbjct: 61  MDLQDEVERPK---VFINLEIVASSGHFENEEGCLSVPGIFANVERAEHVTIKALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL   CLQHELDHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLEADGLFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165


>gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383]
 gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 183

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+D++ E M    G+GLAA Q+GV  R+  
Sbjct: 1   MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP +  FS++    +EGCLS+P    D++R   +     + +  
Sbjct: 61  YLDDSDEVG----HLVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   G+L+ CLQHE DHL+GILFID L +  +    K + +
Sbjct: 117 PVTIEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160


>gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 171

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++   +
Sbjct: 61  IDVSESRDELR--VFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + AD LLA C+QHE+DHL G +F+++LS LK+  I  K+ K  +
Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165


>gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1]
 gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1]
          Length = 181

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR++++PI K   ++   ID+ML+ MY  +G+GLAA Q+   +RLVV
Sbjct: 11  MAVLTVLEYPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +   P+VFINP+     D+ + +QEGCLS+P +   + R+A + V+ +D N +
Sbjct: 71  MDFSEERNE--PIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGK 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  D L+A C+QHE+DHL+G L +D+L+ LKR+ I  K+ K  +L
Sbjct: 129 PFTLEVDELMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176


>gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ FPDP+L +V+ P+   +  +  L+D+M   MY+ +GIGLAA QI +  R+ +I
Sbjct: 1   MLYEIIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL      +  +V INP++I   +     +EGCLS+PD R  V R+A++ VR  D   +H
Sbjct: 61  DLSFQKRPEEKIVLINPEVIAV-EGKQHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKH 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +    LLA   QHE+DHLNGILFI  +SRLKRD++++++ K+++  +
Sbjct: 120 FEVEGTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMKNGE 168


>gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 AFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147]
 gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEDKNEL--RVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 SFEIDCEGLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKLER 165


>gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 168

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+ +  ++ ++  I  L+D+MLE MY + G+GLAA Q+ V  R+VV
Sbjct: 1   MSILSILEFPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II         +EGCLS+P +   V+R+  I V+ +D   +
Sbjct: 61  IDVSEEKDA--PLCLINPEIIEKDGVKES-EEGCLSVPGFFEKVERAEHIIVKALDREGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHELDHL+G LF+D++S LKR  I KK+ K+ ++
Sbjct: 118 PFELSARDLLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKIHKM 165


>gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 SFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B]
 gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B]
          Length = 175

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P P L + + P+ +I  +I  L   M E MY+  GIGLAA Q+G   RLVVI
Sbjct: 1   MSLEILKYPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  M  +NP +IT        +EGCLS+ DYR +V R+A +TV+  D +   
Sbjct: 61  DLSGPDKREGLMTLVNP-VITDPAGEEEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  + 
Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWARQ 166


>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
 gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   + VR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+   ++ +  L D M   MY+ +GIGLAA Q+ V  RLVV
Sbjct: 1   MTPLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  +  EGCLS+P     V+R+  + V  +D N Q
Sbjct: 61  IDVSE--GRNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 KQLHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIKQKKDEE 168


>gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
 gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
          Length = 170

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PDPILR+ +  +E I+  ++ LID+M E MY   GIGLAA Q+G    L+V
Sbjct: 1   MAILDICTYPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQ        +V INP+I+    +   ++EGCLS+P+Y + VKR A + VR    + +
Sbjct: 61  VDLQRQDEEHGLIVLINPQIVATQGE-ITWEEGCLSVPEYFSAVKRHAEVVVRGYGRDGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A GLLA  LQHE+DHL G LFID L+ + RD+ 
Sbjct: 120 EMEIQAGGLLAVALQHEIDHLEGRLFIDRLNPITRDIF 157


>gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec]
 gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec]
          Length = 183

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+D++ + M    G+GLAA Q+GV  R+  
Sbjct: 1   MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          + P      D     +EGCLS+P    D++R   +     + +  
Sbjct: 61  YLDDSDEVGHLINPVLGPFSEEMMDG----EEGCLSLPGLAFDLRRPERVLAVGQNSHGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G+L+ CLQHE DHL+GILFID L +  +    K + +
Sbjct: 117 PVTVEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160


>gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 179

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+    +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYRDLNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178


>gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22]
 gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55]
 gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22]
 gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRE---ERLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 177

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++RP+   +  +  L+ +M E MY   G+GLA+ Q+ V  +L++
Sbjct: 1   MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D+       V INP+I   S +  +Y EGCLS+P     V+R A I VR +D + +
Sbjct: 61  VDISDNQSELR--VLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 EFDTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166


>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
 gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 92/168 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+P+ IL++ +  ++ I+ ++ NLI +M + MY  +G+GLAA QIGV   ++VI
Sbjct: 1   MVRDIVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D           + +    I   +    Y+EGCLS P    +V+R   + V  ++ + + 
Sbjct: 61  DTSPKEDAPPLKLVLINPEIKEGEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGEP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +  +G  A   QHELDHL GI F+D L   +R M  +K  KL++ R
Sbjct: 121 VELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168


>gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ FPD  LR V++P+E++  +I  ++D+ LE  Y+ +GIGLAA Q+ +  R+VVI
Sbjct: 2   SVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVI 61

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   R  P V INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q 
Sbjct: 62  DISE--TRDQPXVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 119 YQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8]
 gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8]
 gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima]
          Length = 164

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++    
Sbjct: 61  --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1]
 gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1]
          Length = 168

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 105/158 (66%), Gaps = 2/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR V++ +E++  +I   ID+ML+ MY   GIGLAA Q+ +  R+VV
Sbjct: 1   MAVLPVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +   PMVFINP+ +   D+ + +QEGCLS+P Y   + R+A + V+ +D + +
Sbjct: 61  MDHSEERNE--PMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  D L+A C+QHE+DHL+G LF+D++S LKR+ I
Sbjct: 119 PFEMEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156


>gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 170

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P++ +PDP L R++RP+  ++  I  L D+ML  MY   GIGLAA Q+ V  RL+
Sbjct: 1   MAILLPILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLL 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+ D   +  P+V INP+II  S +   + EGCLS+P    DV+R   + VR +D   
Sbjct: 61  VVDVSDEHDQ--PLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRG 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q Q+I ADGLLA CLQHE+DHL G +F+ +LS LKR+ I  +M K  + 
Sbjct: 119 QPQVIEADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIKQQRE 167


>gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
 gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY++ GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  ++      +   +IT  D  + Y+EGCLS+P    +V R+  ITV ++D    
Sbjct: 61  IDLSEEKNQLL---ALINPVITKKDGETTYEEGCLSVPGIYEEVTRAETITVEFLDIQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLA C+QHELDHLNG LF+++LS LK++ I  KM K  + 
Sbjct: 118 KQTLDADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKKRQRE 165


>gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 176

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 2   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 61

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 62  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 121

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 122 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 174


>gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2]
 gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2]
          Length = 164

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P  +INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  L---ELDRTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRLKR+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKLQR 164


>gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14]
 gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14]
          Length = 170

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  IE           LIDNM   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+         +  CLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 NGQEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
          Length = 169

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 165


>gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+E ++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLHYPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N  + +    +      +  +EGCLSIP+ RA V R+  + ++ +D N +
Sbjct: 61  I---DVSETRNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIKALDYNGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + +
Sbjct: 118 PFELQADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLDKQK 166


>gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74]
 gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74]
          Length = 190

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 11/179 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+ ++ IE  + D+  L  NM E MY+  GIGLAA QIG   R+ V+
Sbjct: 1   MILPIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVV 60

Query: 62  D-----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D             D +      VFINP+II  + D   ++EGCLSIP  R +V R   I
Sbjct: 61  DGEPLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEII 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +RY D +        DG+ A  +QHE DHL+G LF D+L  L+R +I KK+S + + +
Sbjct: 121 VIRYFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179


>gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
 gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
          Length = 172

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P+P+L + S PI ++  +I  L + M E MY +DGIG+AA Q+G L RLV+I
Sbjct: 1   MSLKIVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+     R+  MV +NP      D  +   +EGCLS+PDYR+ V+R+A + V   D +  
Sbjct: 61  DVTGPEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                AD +LA C+QHE+DHL+G LFID +SRLKR M   K+ K  + 
Sbjct: 121 PVSFDADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKKGTRQ 168


>gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 186

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++++ M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLS+P    D KR   +  +  +    
Sbjct: 61  FDVDD-----VVGHLVNPVLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   GL+A C+QHE DHL+G+LFID L    R    K++ +
Sbjct: 116 PMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRR 159


>gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEVERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
          Length = 200

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 28/198 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP P L+  ++P+ + N ++  L  +M+E M++  G+GLAA QIGV  R+VV
Sbjct: 1   MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60

Query: 61  I----------------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
           I                                      P + +    I  ++   V +E
Sbjct: 61  IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVEAEGQQVDEE 120

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           GCLS+ +Y  +VKR A I V+  D + Q     A+   A  +QHELDHL+G LFID +S 
Sbjct: 121 GCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRISP 180

Query: 153 LKRDMITKKMSKLVQLRD 170
           LKR +  KK+ K++Q  +
Sbjct: 181 LKRTLYRKKLKKIMQAEE 198


>gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 181

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+LR  ++P+   + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +    ++ +++     EGCLS+P  R D +R+  +  + ++ + +
Sbjct: 61  YNVDGVVGH------LINPDLSLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    LLA C+QHE DHL+GI+FID L R  R    K + +
Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIRE 158


>gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54]
 gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54]
          Length = 169

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 92/164 (56%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PDP+LR+ +  I   +  ++ L ++M E MY   GIGLAA QIG   +LVV
Sbjct: 1   MAILKICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        K   + +    I   ++  V +EGCLS+P+  A VKR   I V Y D N +
Sbjct: 61  VSTARREDSKQEYMVMANPEIVEKEESQVDEEGCLSVPELLAMVKRYRKIKVNYQDINGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +   A  LQHE+DHLNGILF+DHLS LKR++  KK+ K
Sbjct: 121 PCSMTVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKK 164


>gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEIERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136]
          Length = 192

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 14/179 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ DP+LR   +PI ++  +I  L  +M+E M++  G+GLAA Q+G+  +L VI
Sbjct: 1   MILPIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVI 60

Query: 62  DLQDHAHRKNPMVFIN--------------PKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           ++         +                     +    + ++ +EGCLSIPD R++V+RS
Sbjct: 61  EVPPDDESVTYVRLNGEDTPLAEAMPLIFLNPKLDHGKEKAMGEEGCLSIPDLRSEVRRS 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           A + V Y   + + + I ADGLLA  LQHE+DHLNGILFID LS   +  + +K+ +L+
Sbjct: 121 AGVKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179


>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
 gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
          Length = 167

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+RP++ ++  +  LID+M E MY+  GIGLAA QI    RLVV
Sbjct: 1   MALLNILHYPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +          +   +IT     +VY+EGCLS+P     V R+  +TV  +D N Q
Sbjct: 61  IDLSEEHDGLL---VLINPVITRKAGETVYEEGCLSVPGIYDKVTRAETVTVEALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F++HLS++K+  I +K+ K  + 
Sbjct: 118 PFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKKRERQ 165


>gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a]
 gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a]
          Length = 170

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  IE           LIDNM   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+         +  CLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 NGQEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 167

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1)
           protein [Ralstonia solanacearum GMI1000]
          Length = 169

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S+   V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDEL--RVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167


>gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602]
 gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602]
          Length = 170

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIPD RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPDQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +KM K+ +L
Sbjct: 118 TFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165


>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 170

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
 gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
          Length = 172

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P PIL +  + IE I+ D++ L+++M E +Y   G+GLAAVQ+GV   ++V
Sbjct: 1   MALLDIVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLV 60

Query: 61  IDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ +  + ++    V INPKI+      +   EGCLS+P++RADV R A +TV  +D  
Sbjct: 61  YDVAEDENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   I A+GLLA  LQHE+DHL G LFID +S LKR M  ++++K ++
Sbjct: 121 GKPVKIDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALK 169


>gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617]
 gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 168

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V
Sbjct: 1   MEQLTILQYPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q
Sbjct: 61  MDTSE--QRNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K  + 
Sbjct: 119 PFEMDADGLTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLKRQRQ 166


>gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEANGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 170

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 TFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220]
 gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---EQLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 172

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PDP L+ V  P+ ++  +I  L  +MLE MY   G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPK-IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       +NP V INP   ++  +  S  +       +YRADVKR + + +   D +  
Sbjct: 61  DPSAQKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +   A  +QHE DHL+GILFID +SRL+R +   K+ K ++ +
Sbjct: 121 AIEEDLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLKRK 169


>gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638]
 gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638]
 gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli]
 gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  I---DVSESRDERLVLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SFELEADGLLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKLHRQ 165


>gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 181

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                 +T S++     EGCLS+PD   D +R+  +  +  D + +
Sbjct: 61  WYVDGQVGHLV------NPDLTLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  +QHE DHL+GILFID L    R    K++ +
Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158


>gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740]
 gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella
           succinogenes]
          Length = 170

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P++ +P P+L++ S P+   + ++   +D M   M + +G+GLAAVQ+G   R ++++
Sbjct: 1   MLPIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVN 60

Query: 63  LQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + D    +     +      F   +    + EGCLS+P++  DV R   + + Y D   +
Sbjct: 61  IPDEEGNQERENLLEIINPEFLSKEGEIQFNEGCLSVPEFYEDVTRFDRVRLTYQDRYGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I A+G LA  LQHE+DHLNGILFID LS +KR    K++ K  +
Sbjct: 121 RHEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKKRQR 167


>gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 190

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D    +EGCLS P  +  +KR+ +  V   
Sbjct: 61  YKYANDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D   Q     A G  A  +QHE DHL+G L+++ L         K+  K
Sbjct: 121 DGYGQPVRFEATGWFARVMQHEYDHLDGKLYVNRLMDRYARKAMKQAKK 169


>gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
 gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
          Length = 170

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L      I++++ ++  L  +M++ MY   G+GLAA Q+G   R+VV
Sbjct: 1   MAILPICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  PMV INP+++         +  CLS+PDYRADV R++ + V   D    
Sbjct: 61  VDTAEDDKRGTPMVLINPRVVAKRGQLVWDEA-CLSVPDYRADVVRASEVVVEAGDLEGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+GL A CLQHE+DHL+G+LF+DH+S LKR M 
Sbjct: 120 DLRIEAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAMY 157


>gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168]
 gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   +  +  +EGCLSIP+ RA V R+  + +R +D   +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKEGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1]
 gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +   D  +  +EGCLS+P+ RA V R+  + VR +D + +
Sbjct: 61  IDVSEDREQQL---VLINPELIEKDGETGIEEGCLSVPEQRALVPRAETVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +++
Sbjct: 118 PFELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166


>gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3]
 gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRE---EQLVLINPEMLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  SD   V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDISESRDELR--VFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford]
 gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford]
          Length = 175

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP++I  S++     EGC+S+P  R +V R   I +RY+
Sbjct: 61  IDIKDHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11]
 gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +   +IT        +EGCLS+P  +  V RSA ++V  +D +  
Sbjct: 61  I---DVSETRDEPMVLINPVITQKSGDDGIEEGCLSVPGAKGLVPRSAEVSVSALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                AD LLA C+QHELDHL+G LF+D+LS LKR  
Sbjct: 118 EFSFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154


>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
          Length = 175

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 7   MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 67  IDIEGDKQNQL---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 124 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 171


>gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + +          INP +    +     +EGCLS P       R+     + ++ + +
Sbjct: 61  YYVDE-----QLGHLINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    L+A C QHE DHL+G+LFID +   +R +  K++ +
Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIRE 159


>gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
 gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V +P+P+L + + P+ +I  +I  L   MLE+MY+  GIGLAA Q+    RL+ +
Sbjct: 1   MPRTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R++P VF+NP +     +    +EGCLS+  YR  VKR+  + +   D + + 
Sbjct: 61  DLSGPDKREDPHVFVNPVLSNLEGEVES-EEGCLSVVGYRTTVKRAERLHLSATDLDGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + AD L+A CLQHE+DHL+G+LFID +S+LKR +  +K+ K ++ ++
Sbjct: 120 VEMDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168


>gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1]
 gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1]
          Length = 164

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I VRY +   ++    
Sbjct: 61  --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEV 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 175

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP+II  S++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIKDHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEVERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ A+ L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 171

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++    
Sbjct: 61  IDVSESRDELR--VFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + AD LLA C+QHE+DHL G +F+++LS LK+  I  K+ K  +
Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165


>gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 177

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 1/166 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PDP+LR  +  + ++   I NL+D+M   MY   GIGLAA QI +    +++ 
Sbjct: 8   ILDIIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINIS-ERLIVM 66

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                        INP+II  S+D S+ +EGCLSIPD  A+V R A +TVRY D +   Q
Sbjct: 67  DCGKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQ 126

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++ A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K ++ 
Sbjct: 127 MLTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMKEMRQ 172


>gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +     +    +      +  +EGCLSIP+ RA V R+  + +R +D    
Sbjct: 61  IDVSENRDGRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163]
 gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SVELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 167

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+EK++  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D         FINP+I+  SD+  +++EGCLS+P    +V+R+  + VR M+   +
Sbjct: 61  IDVSDTHEELR--AFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLA 164


>gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32]
 gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32]
          Length = 206

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 37  MSVLQVLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 96

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    IT        +EGCLS+P  RA V R+A +TV+ +D    
Sbjct: 97  I---DISETRDEPMVLINPEITDKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDREGN 153

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 154 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203


>gi|300718672|ref|YP_003743475.1| Peptide deformylase [Erwinia billingiae Eb661]
 gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661]
          Length = 174

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D    
Sbjct: 61  IDVSENRE---ERLVLINPEMLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SYELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99]
 gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSEDRD---ERLVLIDPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 171

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++K++  I  + D+MLE MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P++ INP+++      +  +EGCLSIP  +A + R+  IT++ ++   +
Sbjct: 61  IDVSED--RHQPLILINPELLEK-SGETGIEEGCLSIPGEKAFIPRAKEITIQALNREGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHL G LF+D+LS  KR  I KKM KL ++ +
Sbjct: 118 SFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167


>gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 170

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P+   +  +  LI++M E MY+  G+GLAA QIG+  RL V
Sbjct: 1   MAIHTILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +     I    I  S+    ++EGCLS+P     V R+  + V+ +D   +
Sbjct: 61  IDIAGDKKNQL---VIINPEIIASEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADGLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K  + 
Sbjct: 118 PFEIQADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKFKRQ 165


>gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
 gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 212

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 173

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++V+ P+  I+ D+  L D+MLE MY   GIGLAA Q+ V+ R++V
Sbjct: 1   MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q        PMV INP+II  S+  SVY EGCLSIP+  A+V R A + V ++  + 
Sbjct: 61  MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + Q    DGL ATC+QHE+DHL+G LFID L  LKR MIT+KM KL + 
Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKLKRE 169


>gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 171

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ FPDP L++ S+P+  IN+ ++ L+ +M E MY   G+GLAA QIGV  R+VVI
Sbjct: 1   MIRKILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP II  +D  S  +EGCLSIP Y A+V+R   + V+ ++ + + 
Sbjct: 61  DVAGKDDPPQLIVAINPVII-HADGESYEEEGCLSIPKYAANVRRHERVVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  +
Sbjct: 120 ITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRR 162


>gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 183

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R +   + ++  L+++M E MY+ +G+GLAA QIGV  R+ V
Sbjct: 1   MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+          D     EGCLS+P       R+++  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D       +   G  A CLQHE DHL+G L++D L   +     KKM K  +
Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIG-RHARAAKKMLKANK 171


>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
 gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
          Length = 169

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160]
 gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160]
          Length = 167

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          INP+I+  SD+    +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSETHDELL--ALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
 gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
          Length = 176

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 16  IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EG LS P+   +++RS  I V+Y +   ++    
Sbjct: 73  --VGNGPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 130

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 131 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 172


>gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134]
 gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134]
          Length = 196

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L++ ++ I     ++  L++NM E MY   G+GLAA Q+G+  R+ ++
Sbjct: 1   MILPIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        FIN +I+    +   + EGCLSIP    DV R   
Sbjct: 61  DTTPFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T++Y D N +      +GL+A  +QHE DH++GILF D LS LK+ +I  K++ + + +
Sbjct: 121 VTIKYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISKGK 180


>gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5]
 gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 176

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 2   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILV 61

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP+II  S++     EGC+S+P+ R +V R   I +R +
Sbjct: 62  IDIKDHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCL 121

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 122 DYHGKSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 174


>gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
 gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
          Length = 196

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+ +  I +   ++  L+ NM E MY   G+GLAA QIG   RL V+
Sbjct: 1   MILPIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  R     FINP+I+  + D   + EGCLSIP    DV R   
Sbjct: 61  DATPFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPI 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D +    +   DGLLA  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 IKIKYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISKGK 180


>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 170

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
 gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
          Length = 193

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EK++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 27  MALLNILQYPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 87  MDLTEDRSEP---RVFVNPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190


>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 167

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  LR++S+P+ KIN+ I  ++ +M + MY  +GIGLAA Q+ +   ++V
Sbjct: 1   MSLLPILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++   V INP+++  S +  +++  CLSIP+    V R+  I VR +D N  
Sbjct: 61  IDVSENKEQRL--VLINPELLAKSGETGIHEG-CLSIPEQHGFVPRAKNIKVRALDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  + L A C+QHE+DHL G LFID+LS LKR  + KKM +L++  D
Sbjct: 118 SFNLETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIRNLD 167


>gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933]
 gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073]
 gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227]
 gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110]
 gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89]
 gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536]
 gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A]
 gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS]
 gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627]
 gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A]
 gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11]
 gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22]
 gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019]
 gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171]
 gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1]
 gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024]
 gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11]
 gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1]
 gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88]
 gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a]
 gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989]
 gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026]
 gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972]
 gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952]
 gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9]
 gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B]
 gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354]
 gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185]
 gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088]
 gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50]
 gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302]
 gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101]
 gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736]
 gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W]
 gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70]
 gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736]
 gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605]
 gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718]
 gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206]
 gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143]
 gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271]
 gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591]
 gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933]
 gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073]
 gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12]
 gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12]
 gi|471304|emb|CAA54826.1| deformylase [Escherichia coli]
 gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227]
 gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110]
 gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89]
 gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536]
 gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS]
 gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A]
 gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627]
 gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A]
 gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11]
 gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22]
 gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019]
 gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171]
 gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1]
 gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli]
 gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli]
 gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli]
 gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli]
 gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11]
 gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989]
 gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1]
 gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88]
 gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a]
 gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026]
 gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82]
 gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972]
 gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952]
 gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1]
 gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15]
 gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042]
 gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088]
 gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185]
 gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354]
 gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034]
 gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302]
 gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101]
 gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W]
 gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972]
 gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146]
 gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407]
 gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70]
 gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W]
 gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1]
 gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1]
 gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3]
 gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1]
 gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3]
 gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431]
 gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112]
 gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905]
 gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83]
 gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212]
 gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327]
 gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B]
 gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101]
 gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89]
 gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687]
 gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010]
 gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357]
 gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1]
 gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11]
 gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520]
 gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482]
 gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120]
 gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252]
 gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263]
 gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863]
 gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007]
 gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509]
 gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2]
 gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1]
 gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253]
 gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167]
 gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044]
 gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125]
 gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v]
 gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86]
 gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736]
 gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605]
 gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718]
 gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206]
 gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143]
 gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271]
 gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591]
 gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82]
 gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74]
 gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74]
 gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9]
          Length = 169

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 179

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P+VI PD  L   +  +  I   I  L+++M E MY  +G+GLAAVQ+GVL R+ +
Sbjct: 1   MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   S +  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKVKRHYE 178


>gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 169

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA QI V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167


>gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase
 gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase
          Length = 188

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   +  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKNGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
 gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILRYPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +      +   +I   D  ++Y+EGCLS+P     V R+  I    +D   +
Sbjct: 61  MDLSESRDQLQ---VLINPVIIERDGETIYEEGCLSVPGVYDKVTRAESIVAEALDAEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I+ADGL A C+QHE+DHL+G +F+ +LSRLK++ I  KM KL +
Sbjct: 118 PYTIHADGLQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKLDK 164


>gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551]
 gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 188

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+      +   IDNMLE MY   GIGLAA Q+    +L+V
Sbjct: 19  MPLLNVLRFPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIV 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 79  MDLQDEVERPT---IFINPQIVASSGDLANEEGCLSVPGIYAKVDRAEFVTLKALDRHGK 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 136 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183


>gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +         FINP+I+  SD   + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSETHDELL--AFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
 gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
          Length = 188

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP+L +    +   +  +  L+D M E MY   GIGLAA QIG+  R+ VID+  
Sbjct: 24  VLKWPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSF 83

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             + K+ +  INP II   +   V +EGCLS+PD R  V R+ ++ V+  D       + 
Sbjct: 84  KKNPKDRLALINPVIIEA-EGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVE 142

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            D LLA  LQHE+DHL+G+LFID +SRLKR+++ +K+ K+ +  +
Sbjct: 143 GDELLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKMQKNGE 187


>gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7]
 gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKLKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--AHDQLLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 179

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178


>gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894]
 gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894]
          Length = 171

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEQSGETGIEEGCLSIPEQRAFVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166


>gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666]
          Length = 173

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  +++P+  +++ +  L  +M + MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  V  EGCLS+P     V+RS  + V+ +D + +
Sbjct: 61  IDVSED--RDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  KM K  +  +
Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQKKDEE 168


>gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 216

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205


>gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
 gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
          Length = 174

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 6   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 66  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172


>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
 gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
          Length = 217

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 3/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P  +LR+ ++P+ KIN+ I  L+D+M E MY+  G+GLAA Q+GV  RL+V
Sbjct: 1   MAILEIVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D QD + +      +    I  ++ +    EGCLSIP    DV R   + V  +D   +
Sbjct: 61  VDPQDGSGQL---YQLINPEIVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL+GIL+ D  + L+
Sbjct: 118 KVWIDAEGYLARIFQHEIDHLDGILYTDKCTNLR 151


>gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94]
 gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP  RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPKQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238]
 gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio
           salmonicida LFI1238]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 3/157 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++ +  +I   ID+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MAVLEVLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +   +IT        +EGCLS+P  +  V RSA ++V  +D +  
Sbjct: 61  I---DVSETRDEPMVLINPVITQKSGDDGIEEGCLSVPGAKGMVPRSAEVSVTALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                AD LLA C+QHELDHL G LF+D+LS LKR  
Sbjct: 118 EFSFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR 154


>gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
 gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
          Length = 174

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 6   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 66  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172


>gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDELR--VFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 TFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli]
 gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A]
 gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75]
 gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli]
 gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A]
 gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 170

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+++++  +  L+D+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MPLLDILRYPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +   P V INP+++  SD+  V  EGCLS+P     V R A +TVR +  + Q
Sbjct: 61  IDVSDDRNE--PRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+ LL+ C+QHE+DHL G +F+++LS LKR+ I  KM  L + RD
Sbjct: 119 AYQFDAEELLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKM--LKKTRD 166


>gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 175

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 104/173 (60%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNPMVFIN-----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P          P+II  S++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIKDHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 179

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+    +KR  ++TV
Sbjct: 61  MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178


>gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans']
 gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans']
          Length = 171

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V++P+  +N  I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +   EGCLSIPD R  V R+  + V+ +D +  
Sbjct: 61  IDVSESRDQRL---VMINPELLEKSGETGIDEGCLSIPDQRGFVPRAEKVKVQALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +KM KL ++
Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165


>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39]
 gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280]
 gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299]
 gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39]
 gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
           2002017]
 gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14]
 gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G]
 gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180]
 gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280]
 gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299]
          Length = 169

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 169

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E+++  I  L+ +M E MY+  G+GLAA Q+ V  R+VV
Sbjct: 3   MALLNILHYPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R    VFINP+I+  SD+  + +EGCLS+P     V+R+  + VR ++ N +
Sbjct: 63  IDVSD--TRDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I   M K  + R
Sbjct: 121 SFELECEGLLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169


>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
 gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
 gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
 gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
 gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
 gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
 gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
 gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
 gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis 8013]
 gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
 gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis WUE 2594]
 gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
 gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
 gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
 gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
 gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
 gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
 gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
 gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
 gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
 gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
 gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
 gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
 gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
 gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
 gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
          Length = 167

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 167

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--AHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 167

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR+V+  ++KI+  I  L  +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MSLLPILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  ++ ++ +    I   D   V +EGCLS+P     V+R+  + VRY D +  
Sbjct: 61  V---DASETRDQLLTLINPEILQQDGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A GLLA CLQHE+DHL G +F++HLS+LK+  I  K++K  ++
Sbjct: 118 EQTVDATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAKQARI 165


>gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
 gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
          Length = 171

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+ ++N  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  ++    + +   IIT  D  + Y+EGCLS+P     V R+  +TV ++D +  
Sbjct: 61  IDLSEERNQL---ITLINPIITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLA C+QHELDHL G +F+++LS LK++ I  KM K  + 
Sbjct: 118 AQKLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKKRERE 165


>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 167

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+ P+ +I   I  LI++M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAILKILQYPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N ++ +    IT S+  S Y+EGCLS+P     V+R+  + VR ++   +
Sbjct: 61  I---DTSEARNDLLVLINPEITASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++ ADGLLA C+QHE+DHL G +F+++ SRLK+     K+ K  +
Sbjct: 118 SFVLDADGLLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKKKQR 164


>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
 gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
          Length = 193

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 27  MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 87  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190


>gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 212

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1]
 gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1]
 gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509]
          Length = 169

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
 gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAESVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1]
 gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1]
          Length = 169

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +  +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKICALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640]
 gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032]
 gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032]
          Length = 177

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 7   MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D N +
Sbjct: 67  IDVSENRD---ERLVLINPELLEQSGETGIEEGCLSIPEQRAFVPRAEKVKIRALDRNGK 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 124 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172


>gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--AHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLA 164


>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
 gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
 gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1]
 gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332]
 gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +               EGCLS+P  ++D  R  +  VR +D   +
Sbjct: 61  FGGIDDREGYIINPVLETGTEPQEGG-----EGCLSVPGMKSDTPRMNWARVRGVDKMGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIR 158


>gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
 gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
          Length = 196

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V++ I     ++  +++NM E MY   G+GLAA Q+G+  R+ ++
Sbjct: 1   MIYPIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        FIN  I+  + +   + EGCLSIP+ R DV R   
Sbjct: 61  DTSPFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+RY D N +       GL+A  +QHE DH+ GILF D +S LK+ +I  K++ + + +
Sbjct: 121 VTIRYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISKGK 180


>gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31]
 gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31]
          Length = 173

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     +L++VS+ +  ++  +  L+D+MLE MY   GIGLAAVQ+G L 
Sbjct: 1   MAIRRILTVDNAADLAVLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ++V+DL        P  F+NPKI   S++   Y+EGCLS+P+    V+R A + + Y++
Sbjct: 61  NVIVMDLAREGEEPAPRYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +     A+ L A C+QHE+DHL G+LFIDHLSRLKRD    K+ K  +
Sbjct: 121 YQGEAVEEDAEELFAVCIQHEMDHLKGVLFIDHLSRLKRDRAISKVKKARR 171


>gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 170

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V   DP+L R +  + + +  +  L+++M E MY   G+GLAA QIG+  R+ V+
Sbjct: 1   MTYPIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+II      +  +  CLSIPD+R  V R+  +TV+  D   + 
Sbjct: 61  DVTFKEDPNAKLVLINPEIILTDGRQTSQEG-CLSIPDFREKVTRARRVTVKAQDLTGKW 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                + LLA    HE DHLNG L+I H+S LKRD+I +K+ KL++  +
Sbjct: 120 FEHTGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIKAGE 168


>gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217]
          Length = 170

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR ++ P+      +   ID+M+E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MPLLNVLRFPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 61  MDLQDDIERPK---IFINPEIVAKSGEFSNEEGCLSVPGVYAKVDRAEFVTLKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 PFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 165


>gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 205

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I  DP+L   + P+   +S +  L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 19  MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78

Query: 61  IDLQDHAHRKNPMVFINP----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            D  D        V INP          +     +EGCLSIP  R  + R+  + +R +D
Sbjct: 79  YDWIDDDDAHWRGVAINPELWHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVILRAVD 138

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + +   I A G LA   QHE DHL+G+L+ D L
Sbjct: 139 LDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172


>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
 gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
 gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 169

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPEMLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13]
 gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13]
          Length = 166

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++  +E  +     L+ +M E MY + GIGLAA Q+ V  R++V
Sbjct: 1   MALLKILKYPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +    +   D    Y EGCLS+P +   VKR   IT+ Y D    
Sbjct: 61  IDISDDKKDLL---VLINPKLIKFDGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + + ADGLL+ C+QHE+DHL G +FI++LS+LK+  I KK+SKL +
Sbjct: 118 IKTLEADGLLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKLSR 164


>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
 gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
          Length = 169

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRE---ERLVLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166


>gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 193

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++P+ +  S++  LI++M E M    G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60

Query: 61  IDLQDHA------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            +  D           NP++  +    T  +D     EGCLS+P       R+    V  
Sbjct: 61  YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N +   I A G  A C+QHE+ HL+G L+ D L+   + M  K++ +
Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170


>gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D N +
Sbjct: 61  IDVSENRE---EQLVLINPEMLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNDK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 201

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +                GCLS+P  ++   R  +  V  +D   +
Sbjct: 61  FGGIDDREGYIINPVLEVGEEDQEGGE-----GCLSVPGQKSATPRKNWARVTGVDRRGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALR 158


>gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
 gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
          Length = 167

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P+ +L+  + P+ +I  DI  LID+M   MY+  GIGLAA Q+G L R+++
Sbjct: 1   MAILEIQTYPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+      +   V INP+II         +  CLS+ DY ADV+R A +    +D N +
Sbjct: 61  FDITPKNEGRKLNVLINPEIIAAEGAQVYQEA-CLSVLDYAADVRRKARVLATGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+ LLA  LQHE+DHL+GILFID +SRLKR++ 
Sbjct: 120 EVRIEAEDLLAVVLQHEIDHLDGILFIDRISRLKRNLY 157


>gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 186

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI ++ + M  + G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDD-----VVGHLVNPVLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A C+QHE DHL+G+LFID L    R    K + 
Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIR 158


>gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
 gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
          Length = 164

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K +  +   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   VRVFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+  S +  + +EGCLS P+   +++RS  + VRY +   +     
Sbjct: 61  --VGNGPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +   KR ++ K++  + +
Sbjct: 119 LEGYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRLMDIAK 160


>gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
 gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
          Length = 181

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 81/168 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+LR   R +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 13  VRPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 73  CPDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++  G  A CLQHE DHL G L+ D L+  +   + +++ +    R+
Sbjct: 133 TVHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180


>gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 177

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
              P+++ PD  LR  +RP+   +++ +  L   ML  MY   GIGLAA QIG L RLVV
Sbjct: 5   SLLPILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQ     + P V INP+I+  S + S  +EGCLS+P+  A+V R A I VR++D    
Sbjct: 65  VDLQPDEKPE-PYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K ++ +
Sbjct: 124 KREMQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQ 172


>gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 181

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                    SD+     EGCLSIP    D +R+     R  +    
Sbjct: 61  WYVDGEPGHLVNPQL------DLSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  LQHE DHL+G+LFID L    R    K + +
Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158


>gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19]
 gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19]
          Length = 177

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P P+L++VS+P++K++ D+  L+D+MLE MY   GIGLAAVQIG   R++V
Sbjct: 1   MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60

Query: 61  IDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +DLQ+            K P  F+NP+II  S++ + Y+EGCLS+P+   +V R + + +
Sbjct: 61  MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y+D N       ADGL A C+QHE+DHL G LFIDHLS+LKRD    K+ KL +
Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175


>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
 gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
          Length = 170

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 97/166 (58%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++ +P+  L+ V   +E++  ++  +IDNM+E MY  DG+GLAA Q+GV  RL+VI
Sbjct: 1   MKLDILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+  S      +E CLS P ++  +KR   +TV   D     
Sbjct: 61  DPSGPKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGND 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I AD  LA  LQHE+DHL+G L +D + RLKR M  KK+ K ++
Sbjct: 121 VRIEADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166


>gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 172

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L++ S  +  I  +I  L+ +M E MY   G+GLAA QIGV  R+++I
Sbjct: 1   MIRTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+       N ++     +I  ++  S  +EGCLS+P Y A+V+R A +TVR +D   + 
Sbjct: 61  DVS-AHDEPNELIIAINPVIVHAEGESYEEEGCLSVPKYAANVRRHASVTVRGLDLEGRE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           Q  +A+GLLA   QHE+DHL+G LF+DHLS LKRD+  
Sbjct: 120 QTWHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDLFQ 157


>gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 182

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M+   G GLAA QIGV  R+  
Sbjct: 1   MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP      D+     EGCLSIP  R D  R   +  R  + + +
Sbjct: 61  YDVDGFAG-----HLVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    LLA C+QHE DHL+G+LF+D L    R +   ++ 
Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRLDAETRKLAMAEIR 158


>gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 214

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++  
Sbjct: 17  MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 76

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +                GCLS+P  ++   R  +  V  +D + +
Sbjct: 77  FGGIDDREGYIINPVLEVGEEDQEGGE-----GCLSVPGQKSATPRKNWARVTGVDRHGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 132 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALR 174


>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
 gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
          Length = 167

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E  ++ +   ID+M E MY   GIGLAA Q+    RLVV
Sbjct: 1   MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +               I   D  +VY+EGCLS+P     V R+  + V+  D + +
Sbjct: 61  MDISEERD---ERRVFINPEIVEKDGETVYEEGCLSVPGIYDKVTRAERVKVKAQDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHLNG++F++ LS++K+  I  K+ K  + 
Sbjct: 118 PFELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165


>gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 182

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L   + P+   ++++  L+ ++ + M +  G GLAA QIGV  R+  
Sbjct: 1   MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                  T S +     EGCLSIP    D +R+  +  +       
Sbjct: 61  YHVDGELGHLINPEL------TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +I    LLA C+QHE DHL+G+LF+D L    R    K + +
Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIRE 158


>gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 168

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L++ + PI +I+ DI  L D+M E MY+  GIGLAA+Q+    RL+V
Sbjct: 1   MALLKIVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  +N ++ +    I  S      QEGCLS+P     V+R+  + VR +D   +
Sbjct: 61  V---DVSEARNELLTLVNPEIIESSGEEEMQEGCLSVPGVLETVRRAERVKVRALDLRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K  K ++
Sbjct: 118 TLELEADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRLR 164


>gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C]
 gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 175

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAHRKNPMVFIN-----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   K P  F       P+II  S++  +  EGC+S+P+ R ++ RS  I +RY+
Sbjct: 61  IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS +KRD+  +K+ KL + 
Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKLKKN 173


>gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 172

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+           +  I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  VMYDNLEEQNPEIIT-IINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 120 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168


>gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 185

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDD-----VLGHLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A C+QHE DHL+G+LF+D L    R    K + 
Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIR 158


>gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda]
 gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda]
          Length = 181

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 9/175 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+  PDPIL++V+ P++ +N  I  L+D+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MSILSLITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIV 60

Query: 61  I---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +         D   ++  K P+  +NP +   S+  +  +EGCLS+P    +V R   I 
Sbjct: 61  LDLSKVDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQ 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           V Y+D   +   + A+G LA  +QHE+DHL+GIL +D+LS LK++     +SK+ 
Sbjct: 121 VTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKIK 175


>gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 175

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 111/173 (64%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP+II  S++  +  EGC+S+P+ R ++ RS  I +RY+
Sbjct: 61  IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS +KR++  +K+ KL + 
Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKLKKN 173


>gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae]
          Length = 169

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   S  +E  +S I NL+++MLE M +  G+GLAA Q+GV  R+  
Sbjct: 1   MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP      +D  +  EGCLSIPD + + +R   ++V   D +  
Sbjct: 60  VYDCSHIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L ++ R     ++ K
Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHRKDAMAQIRK 163


>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
 gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
          Length = 174

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 95/167 (56%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P+L++ +  ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG   R++VI
Sbjct: 1   MVRSVLKYPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D           + +    +  ++    Y+EGCLS P    +V R + +  R +D + + 
Sbjct: 61  DTTPKRESPPVKLVLINPQLIEAEGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGEE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +    +G  A   QHELDHLNGI FID LS L+R +  +K  KL + 
Sbjct: 121 KEYQLEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKLQRQ 167


>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
 gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
          Length = 183

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + + +LR+V+ PI     ++  LIDNM + MY  +G+GLAA Q+G+  RL+VI
Sbjct: 1   MILPIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D       D       +  INP+I+  S++     EGCLSIP     V R+  I + Y+D
Sbjct: 61  DLAPFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + +      +G  A  +QHE DHL G LF DH++ ++R ++  K++ +V+ +
Sbjct: 121 PDFKEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVKGK 173


>gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 164

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  + +L+ ++LE + +    GLAA QIGV  R   
Sbjct: 4   MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+   D+     EGCLS+P       R+A+  V  +D +  
Sbjct: 64  WNIDDEVG-----YVLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL+A CLQHE DHL+G L++D L R  R    +++ +
Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLDRLERSVRVRAMRELRE 162


>gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 163

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  P+ ++   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLSIP+     KR+ +      D + +
Sbjct: 61  YNIDGQIG----YVLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE+DHLNG L+ID L R  R    + + 
Sbjct: 117 PVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVRKKALRDIR 159


>gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 197

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+  
Sbjct: 3   MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R     V  +D +  
Sbjct: 63  YRI-----GGVEGHIINPVLENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +G+LA C QHE DHL+GILF D L    R    + +  
Sbjct: 118 PVTVDGEGMLARCFQHETDHLDGILFTDRLEGEDRKAALRSIRN 161


>gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
          Length = 194

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 22/192 (11%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     IL++VS+P+  ++  +  L+D+ML+ MY   GIGLAAVQIG L 
Sbjct: 1   MAIRRILTIDNTADLAILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQ 60

Query: 57  RLVVIDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           R+VV+DL D                       NP  F+NP++I  SD+   Y+EGCLSIP
Sbjct: 61  RVVVMDLGDGPAPEAAEAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIP 120

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           +Y   V+R A + V Y+D          +GL A C QHELDHLNG+LFIDHLSRL+RD  
Sbjct: 121 EYFDQVERPARVRVAYLDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRA 180

Query: 159 TKKMSKLVQLRD 170
             K+ K ++LR+
Sbjct: 181 MSKVKKTMRLRE 192


>gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +               EGCLS+P  ++D  R  +  VR +D   +
Sbjct: 61  FGGIDGREGYIINPVLETGTEPQEGG-----EGCLSVPGIKSDTPRMNWARVRGVDKTGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIR 158


>gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 214

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 98  DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203


>gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 92/169 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V +P  +L++ +  +  I+ ++ +LI +M + MY+ +G+GLAA QIGV   ++VI
Sbjct: 1   MVREIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D        +  + +    +  S+    Y+EGCLS P    +V+R+  + VR ++ + + 
Sbjct: 61  DTTPKEDVPDLKLVLINPEVIASEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGEP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +  +   A   QHELDHL GI FID L   +R +  +K  KL +  +
Sbjct: 121 VEVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKLQKEAE 169


>gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
 gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
          Length = 200

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 106/173 (61%), Gaps = 6/173 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR++++P+EKI+++I  ++D+M + +Y+ +GIGLAA Q+ +  +++V
Sbjct: 24  MPILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIV 83

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           I + D + +   +      ++  + +       +  +EGCLSIP  R  VKRS  + +R 
Sbjct: 84  IHIPDDSDQNERIEAHYRPLVLINPELLEESGETGIKEGCLSIPGVREWVKRSERVKIRA 143

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +D +     + ADGLLA C+QHE+DHL G LFID+LS LK   I KK+ K  Q
Sbjct: 144 LDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196


>gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571]
 gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571]
          Length = 165

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV FPDP LR+ + P+   +  + +   ++L+ M +  GIG+     G++ RLV 
Sbjct: 1   MAVLDLVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +          P  ++NP+++  S +   + EG +S+P    +V+R A + V +   +  
Sbjct: 61  L----ELPETAPAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGT 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLL+ CLQHE+D L+GI +I  LSRLKR+ + KK  KL++
Sbjct: 117 GHEVEADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163


>gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 193

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   +R + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114
            +  D     +   FINP + T     ++       +EGCLS+P       R+ +  V  
Sbjct: 61  FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRADWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++ + +   +   G LA C QHE+ HL+G+++ D L    + +  K + 
Sbjct: 121 LNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKRLAKKTIK 169


>gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
          Length = 163

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLS+P+     +R+ +      D + +
Sbjct: 61  WNIDGEIG----YVLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  + L+A C+QHE DHL+G ++ID L R  R    + +  
Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRN 160


>gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 188

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  +++I  ++  L+ +M E M +  G+GLAA Q+GV  R+  
Sbjct: 1   MAVLPIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFT 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +D                   +     D     EGCLS P  R  ++RS    +  +
Sbjct: 61  YTYEDDEGLPWRGVVINPELWIRPLEPGYPDPDDESEGCLSFPGERFPLRRSDAALLTGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           D + +   I   G  A  LQHE DHL+GIL++D L      ++ K   K  
Sbjct: 121 DLDGRPVRIEVTGWRARILQHEFDHLDGILYVDRLDDEDSRVVAKIAKKRK 171


>gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001]
 gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001]
          Length = 275

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++  P P+LR+ +R ++  + +DI  ++ NM   MY   GIGLAA Q+G+  +  +
Sbjct: 108 APLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLS-QRFL 166

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        ++P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N  
Sbjct: 167 LVDLGEKDARDPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGD 226

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ +
Sbjct: 227 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 275


>gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11]
 gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11]
          Length = 169

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PDP+L   + P+  I   +  L  +ML+ MY   G GLAA Q+GVL R+ V
Sbjct: 1   MAVRPIVAWPDPVLSTPASPVIAITD-VAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       + P++ INP+I   SD      EGCLSIP     V+RS ++ + + D    
Sbjct: 60  MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                 DG  A C+QHE DHL+GI+  D +S + R    K
Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEK 159


>gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
 gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
          Length = 196

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + +P+L++ ++ I K    +  LI+NM E MY   G+GLAA Q+G+  RL VI
Sbjct: 1   MILPIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                       +FINP I   + D   + EGCLSIPD R DV R   
Sbjct: 61  DPSPFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y+D N +       G+ A  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 ITIEYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISKGK 180


>gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970]
 gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970]
          Length = 181

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++             +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLSENRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKKRQK 178


>gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.]
          Length = 177

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 103/170 (60%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L   ++P++ IN+D+  +ID+M+E MY   GIGLA++QIG    ++V
Sbjct: 7   MAILDILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+    H+++  V +NP II    +     EGCLS+PD R+DVKR+A + V  +D    
Sbjct: 67  YDIDQTEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGN 126

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A   LA  LQHE+DHLNG+LF+D +S LKR++  + + K  +  +
Sbjct: 127 PLKIEAHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKKQQKKNE 176


>gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
 gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
          Length = 177

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LR  ++P+EK+  ++  L+D++ E MY   GIGLAA Q+ + +R++V
Sbjct: 1   MAILDILHYPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P+ FINP+I+    +  + +  CLS+P Y   V+R+ ++ V   D + +
Sbjct: 61  VDITE--AKNEPLAFINPQILERKGEEEMQEG-CLSVPGYFDTVRRAEWVKVHAQDRSGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  DGLLA C+QHE+DHL G LF+D+LS
Sbjct: 118 PFELETDGLLAVCIQHEIDHLEGKLFVDYLS 148


>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
 gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
          Length = 170

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++ ++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGETGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 VFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 188

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + D+  L+ +M + M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +                    +     D    +EGCLS P  R  + R+    +R +
Sbjct: 61  YSYETDEGEPLRGVAVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D + +   I A G  A  LQHE DHL+G+L+ D L+ + R  + K + K
Sbjct: 121 DLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169


>gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 188

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R ++  + D+ +L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +                    +     D    +EGCLS P  R  + R+    +R +
Sbjct: 61  YSYETDDGEPLRGVAVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D + +   I A G  A  LQHE DHL+G+L+ D L+   R  + K + K
Sbjct: 121 DLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169


>gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 192

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L + +R I + +  +  L+D+M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+          D     EGCLS P       R+ +  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D +     +   G  A CLQHE DHL+G +++D L   +     KKM K  +
Sbjct: 121 DIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVG-RHARAAKKMLKSNK 171


>gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 167

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+      +  ++     +I   +  S  +EGCLS+P Y A+V R   + V+ ++   + 
Sbjct: 61  DVS-QRDERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ + 
Sbjct: 120 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEE 166


>gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 186

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LRR ++P+E  I + +     +M+E M    GIGLAA Q+ V +R+V
Sbjct: 1   MAILKIARMGHPVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIV 60

Query: 60  VIDLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V  +               P V +NP     S++     EGCLSIP  R  V R A I  
Sbjct: 61  VFRVPGDRATGGAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           R +  +       A G  A  +QHE+DHL+GIL+ID +  L R   T++M 
Sbjct: 121 RGLSLDGTAVEREASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEMR 171


>gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong]
 gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong]
          Length = 181

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/175 (38%), Positives = 101/175 (57%), Gaps = 9/175 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV  PDPIL++VS P++ +N  I  LID+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MSILSLVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIV 60

Query: 61  I---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +         D   ++  K P+  +NP +   S+     +EGCLS+P    +V R   I 
Sbjct: 61  LDLSKVDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQ 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           V Y+D   + + + A G LA  +QHE+DHL+GIL +D+LS LK++     +SK+ 
Sbjct: 121 VTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKIK 175


>gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 212

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +        EGCLS+P   A++ R  +  VR  D  
Sbjct: 96  DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M +
Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201


>gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 167

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILNYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +    + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDDHNEL--LAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
 gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
 gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
 gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
 gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
 gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
 gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
 gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
 gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Zinc- Peptide Deformylase Bound To Formate
 gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Iron- Peptide Deformylase Bound To Formate
 gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide
           Deformylase Bound To Formate
 gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343
          Length = 168

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 185

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DPILR  +  + + + ++  L+ ++ + M+   G+G+AA QIGV  R+ V
Sbjct: 1   MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D A        +NP      D+  V  EGCLSIP  R D +R+  + VR +D +  
Sbjct: 61  YDTGDAAG-----HLVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                AD LLA C+QHE DHL+G+LFID L    R    + + +
Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAARKEAMRAIRE 159


>gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 172

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           +       I   +   + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLEEQNPEIITI-INPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 120 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168


>gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 212

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +     +    CLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M++
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201


>gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+     ++  L+ +M E M   +G GLAA Q+GV  R+  
Sbjct: 1   MAILSIRIIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R        +D N  
Sbjct: 61  YRI-----GGVEGHIINPVLENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A+G+LA C QHE DHL+G+L+ D L    R    + +  
Sbjct: 116 PVSVEAEGMLARCFQHETDHLDGVLYTDRLEGDDRKAALRAIRN 159


>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
          Length = 181

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 184

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 92/167 (55%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L      I +I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREVLQYPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R+  M F+NP++    D     +        YRA V RS  + +   D +   
Sbjct: 61  DVSGPEKREALMTFVNPRLELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGNE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA CLQHE+DHL G LFIDH+SRLKR +   ++ K+ + 
Sbjct: 121 VCMDADGLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQKN 167


>gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
 gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
          Length = 170

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 4/169 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+ + P+E +N +I  +ID+M+E M+   G+GLAA QIGV  R+ VI
Sbjct: 1   MIYDIRTYGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D++D   RK     INP+ + FS +   ++EGCLS+P     VKR A + ++Y + N + 
Sbjct: 61  DIEDGKIRK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            I  A+GLL+   QHE DHL+  LF+D LS + + M++KK+  L +  +
Sbjct: 117 VIEEAEGLLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQALKKETE 165


>gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
          Length = 165

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 2/165 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID
Sbjct: 1   MLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVID 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +  
Sbjct: 61  VSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPF 118

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 163


>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
 gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
          Length = 170

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ +  P+ ++N D   +ID+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILESEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ + R+
Sbjct: 118 EFTLKADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167


>gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 163

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLS+PD     KRS +      D + +
Sbjct: 61  WNIDGDIG----YVLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE DHL+G ++ID L R  R    + + 
Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTRKKALRDIR 159


>gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400]
          Length = 167

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +    + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDDHNEL--LTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
          Length = 173

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+  +
Sbjct: 1   MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMF-V 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP I   +++    +EGCLS+P     V R A I + Y +   + 
Sbjct: 60  CDVGTPEESQVKKIINPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166


>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 181

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 216

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 195

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +RP+++ + ++  LI +M E M + +G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    +     +NP + T        D     EGCLS P       R+++  V   
Sbjct: 61  YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGRASWAKVTGT 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N     +   G  A CLQHE DHL+G L++D L    +   +KKM K
Sbjct: 121 DGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHK-RASKKMIK 168


>gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  L+ V+RPI +++  I  L D+M E MY   GIGLAA Q+   +RL+V
Sbjct: 1   MPLLKILEIPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ ++ +       +    I         +EGCLS+P     V+R+  +TVR      +
Sbjct: 61  VDVSENRNDLL---TLLNPEIIARTGEEEMKEGCLSVPGVLETVRRAEKVTVRATTVQGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA CLQHE+DHL+G LFIDHLSRLK+ +I +K  K V+L D
Sbjct: 118 TVELEADGLLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167


>gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3]
 gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3]
          Length = 192

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 20/189 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++    P    IL++VS+P+  ++  +  L+D+MLE MY+  GIGLAAVQ+G L 
Sbjct: 1   MAIRRILTIDIPADLAILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALD 60

Query: 57  RLVVIDLQDHAHRKN----------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           R++V+DL D                      P  F NP+I+  SD+   Y+EGCLSIP+Y
Sbjct: 61  RVIVMDLGDRDGTICETEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V+R A + +RY++ + Q     A+GL A C+QHE+DHLNG+LFIDHLSRLKRD    
Sbjct: 121 FDKVERPARVRIRYLNRDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVT 180

Query: 161 KMSKLVQLR 169
           K+ K  + R
Sbjct: 181 KVKKAARDR 189


>gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 240

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 78/162 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL I  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 52  VRPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYD 111

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 112 CPDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPV 171

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G +++D L+  +R  + ++ ++
Sbjct: 172 TVRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAAR 213


>gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +    + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDDHNEL--LAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39]
 gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39]
          Length = 184

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V  PIE+   ++  LI NM E MY+  G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D   D        V+IN +I+  + +   + EGCLSIPD R DV R   I +RY D N +
Sbjct: 61  DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  G+LA  +QHE DH+ G LF + LS L++ M+  K+  + + 
Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKLDAISKG 168


>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 171

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VV
Sbjct: 1   MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +     VFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ +D + +
Sbjct: 61  IDVSDEQNELM--VFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADG LA CLQHELDHL G +F+++LS  KR  I++KM K  + 
Sbjct: 119 EFEIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166


>gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 193

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +  DP+L R +RP+E+++  I  L+D+M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MTVLRIRMVGDPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIIT------FSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   R      +   ++          D    +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDEETRTMRRGLVVNPVLETSERPQVMPDPDDDEEGCLSVPGESYPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            D + +   +   G  A CLQHE DHL+G L++D L   +     KKM K 
Sbjct: 121 TDLDGEPVDVEGRGFFARCLQHETDHLDGHLYLDRLMG-RNQKAAKKMLKQ 170


>gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 186

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 112/169 (66%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++  P P+LR+ +R ++  + ++I  ++ NM   MY   GIGLAA Q+G+  R ++
Sbjct: 19  APLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFIL 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N  
Sbjct: 79  VDLGEKDARD-PIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGD 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ +
Sbjct: 138 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 186


>gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 189

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI   P+L R +  + + ++ +  L+ ++ E M ++ G+GLAA QIGV  R+  
Sbjct: 1   MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              ++          +NP +          D     EGCLS+P     +KR+ ++ +   
Sbjct: 61  YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N       A+G  A  +QHE DHL+G L++D L+        K + +
Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRR 169


>gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
 gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
          Length = 162

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++L+ +      GLAA QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    D++    EGCLS+P+     +R+ +  V   D +  
Sbjct: 61  WNIDDEIG----YVLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++    L+A CLQHE+DHL+G L++D L +  R    + + +
Sbjct: 117 KVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVRKKAMRALRE 160


>gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 168

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PD  LR+    +   +  +  L+D+MLE MY + +GIGLAA Q+G    ++
Sbjct: 1   MAILDILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     +  P V +NPKI+         +  CLSIP Y ADV+R   + V   D   
Sbjct: 60  VIDLSPDRDK--PTVLVNPKIVEKERRVVNQEG-CLSIPGYYADVERFEKVKVEAFDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               I ++  L+  +QHE+DHLNG++FID+LS L+R M  KK+ K +  R+
Sbjct: 117 NQTTIESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167


>gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 173

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+  +
Sbjct: 1   MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMF-V 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP I   +++    +EGCLS+P     V R A I + Y +   + 
Sbjct: 60  CDVGTPEESQVKKIINPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQALKKE 166


>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
 gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
          Length = 181

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  +  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 161

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI++I   +  L+++++E +      GLAA QIGV  R   
Sbjct: 1   MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++         +     +    D+F   +EGCLS+PD     KRS +      D + +
Sbjct: 61  WNIEGEIG----YILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +++  +GL+  C+QHE+DHL+G L+ID L R  R    + +  L
Sbjct: 117 KKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161


>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
 gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
          Length = 169

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V++PD  LR V +P+ ++  ++  LID M   MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  K+  + +    I  +     ++EGCLSIP   A V R + I VR MD + +
Sbjct: 61  V---DISETKDEPIALLNPEIIKTAGKITWEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                A+ LLA C+QHE+DHLNG LFIDHLS LKR    +K  K +
Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKKEM 163


>gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 174

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           +  I    I   +   + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLEEQNPEIIT-IINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 122 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
 gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
          Length = 168

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P P+LR+ +  I   + ++  LI++M + MY+  G+GLAA QIGV  +LV+
Sbjct: 1   MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +N +V INP+ I+  +     +EGCLS+ +    VKR   I V  +D    
Sbjct: 61  VDRSTKDNERNYLVLINPE-ISAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                A+   A  +QHE+DHL G LFID LS 
Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLSS 151


>gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 218

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R ++ +   ++++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     +        EGCLS+P   A++ R  +  VR  D  
Sbjct: 102 DCPDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEK 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ++   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 162 GNPIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207


>gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 196

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ ++ I         LI+NM + MY   G+GLAA QIG+  R+ ++
Sbjct: 1   MIIPIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFLV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        F+N +I+    +   + EGCLSIP    DV R   
Sbjct: 61  DTTPFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKPK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+RY D N +      DGL+A  +QHE DH+ G+LF D LS LK+ +I  K+  + + +
Sbjct: 121 VTIRYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKLVNISKGK 180


>gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
 gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 184

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++V++ IEK + D++ +  +M E M +  G+GLAA Q+ +  R+ VI
Sbjct: 1   MIYPIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVI 60

Query: 62  D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D     D         FINP I     D   Y+EGCLSIP  RADV R A + +RY D +
Sbjct: 61  DTSVFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  +   DG+ A  +QHE DH+ G+LF+DHLS +K+ ++  K++ + + 
Sbjct: 121 WKEHVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISKG 170


>gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 191

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  ++ P+ ++  +I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 25  MALLKILQYPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIV 84

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D ++  + ++ +    IT  +  S Y+EGCLS+P     V R+A ITV  ++ + +
Sbjct: 85  I---DVSNTHDQLLVLINPEITTHEGESDYEEGCLSVPGIFGKVPRAAQITVEALNKDGE 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE+DHL G +F+++ SR+K+  I  K  K  +
Sbjct: 142 RFTLDADGLLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRKQRR 188


>gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG]
 gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112]
 gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG]
          Length = 174

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1]
 gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1]
          Length = 174

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P P+L + + P+ +I   I  L   M E MY+  GIGLAA Q+G   RL+VI
Sbjct: 1   MPLEILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  M  +NP +IT +      +EGCLS+  YR  V+R+A +TV  +D   Q 
Sbjct: 61  DLSGPDKREALMTLVNP-VITAASGEQEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I AD LLA CLQHE+DHL+G+LFID +SRLKR M  K++ +  Q
Sbjct: 120 LTIEADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165


>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 175

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  FPD +LR  + P++ I+  I  L+DNM+E M++  G+GLAA Q+G+  RL+VI
Sbjct: 1   MILEVKTFPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D     +    +  INP+II+   +  V +EGCLSIP     V+R+  +TV+ MD N + 
Sbjct: 61  DTSAGENEGMLLRVINPEIISAEGE-QVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + A+G LA   QHE+DHL+G+LFID L   K+D + K + +
Sbjct: 120 YTMEAEGFLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKR 162


>gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 193

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114
            D  D     +   FINP + T     ++       +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++   +   + A+G LA C QHE+ HL+G L+ D L    + M  K + 
Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIK 169


>gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 192

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ +  I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60

Query: 62  D--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D         +D + +    VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + + 
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175


>gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 166

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 88/166 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L+     +E I  +I  L+ +M E MY+  G GLAA Q+GV+ RL V
Sbjct: 1   MSVLPIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        NP+V INP I+  SD  S  +E CLSI    ADV R   I + Y   N +
Sbjct: 61  MDATWKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                 +G  A C QHE+DHL+G +  DHL   +R  +  K  +++
Sbjct: 121 RVTAVIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166


>gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 193

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114
            D  D     +   FINP + T     ++       +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++   +   + A+G LA C QHE+ HL+G L+ D L    + M  K + 
Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIK 169


>gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy]
 gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy]
          Length = 167

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 94/166 (56%), Gaps = 4/166 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +    D +L    +P+ K +S +  L+D M E M   DG+GLAA Q+GV  RL VI 
Sbjct: 1   MLDIYTLGDEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIH 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +Q   +R      INP+II  S +    +EGCLSIP    DV+R A +TV+  D   +  
Sbjct: 61  IQGSENRAY----INPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVF 116

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + A+GLLA  +QHE DHLNG+LFID L+  +R+ + K   K  +L
Sbjct: 117 TVKAEGLLARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162


>gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5]
 gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5]
          Length = 186

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  LI ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDD-----VLGHLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A C+QHE DHL+G+LF+D L    R    K + 
Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIR 158


>gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 185

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +++  +  I  +I  L+ NM E MY+  GIGLAA Q+ V  R++V
Sbjct: 18  MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++ ++ +    I  S   +  QEGCLS+P     V R+  +TVR    + +
Sbjct: 78  I---DVSETRDELLVLINPEIIASSGNAETQEGCLSVPGIFDKVTRAEEVTVRATGIDGK 134

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA C+QHE+DHL G +F+++LS  K+  I  K+ K  + +
Sbjct: 135 SFEMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARRQ 183


>gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 186

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLS+P    D KR   +  R  + +  
Sbjct: 61  FDVDD-----VIGHLVNPVLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              I   GL+A C+QHE DHL+G+LFID L    R    K + +  
Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQAQ 161


>gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 200

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ ++ +P+L +  R +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 24  TARPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVY 83

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +     D        EGCLS+P    ++ R  +  VR  D +
Sbjct: 84  DCMDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLD 143

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   G  A CLQHE DHL G L+ D LS+  R  + K+M++
Sbjct: 144 GEPIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189


>gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
 gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
          Length = 186

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR++++ I +   ++  LI +M E   ++DG+GLAA Q+G   R+VVI
Sbjct: 1   MILPIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                             +  V +EGCLS+P     V+R   + V+++
Sbjct: 61  DLDVVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +    +  G LA  +QHE DHL G +F D +S  ++ MI KKM  L+Q +
Sbjct: 121 DENMEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQGK 174


>gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +        EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206


>gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134]
 gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134]
          Length = 183

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ +  I    +D+  L++NM E MY   G+GLAA QIG   RL VI
Sbjct: 1   MIYPIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVI 59

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D A +   M FINP I+       V++EGCLSIPD R +V R   I ++Y D N 
Sbjct: 60  DPEPMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNW 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +      DG+ A  +QHE DH+ G+LF D+LS  K+ ++  +++K+ + 
Sbjct: 120 KEHEAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISKG 168


>gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1]
 gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1]
          Length = 171

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LRR ++ +   + D+  LID+M+E M +  G+GLAA Q+GV  R++V
Sbjct: 1   MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     + +D    K     +NP+I+  S +     EGCLSIP    +V+R   I V+ +
Sbjct: 61  VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   +       G  A   QHE+DHL GIL+ D  + +
Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRATSV 158


>gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName:
           Full=Polypeptide deformylase 4
 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 216

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 216

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
          Length = 182

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 16  MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 75

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+      +  ++     +I   +  S  +EGCLS+P Y A+V R   + V+ ++   + 
Sbjct: 76  DVS-QRDERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ + 
Sbjct: 135 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEE 181


>gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 210

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 34  TARPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVY 93

Query: 62  DLQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NP +              EGCLS+P   A++ R  +  V   D  
Sbjct: 94  DCPDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQ 153

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 154 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199


>gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 192

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ ++ I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60

Query: 62  D--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D         +D + +    VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + + 
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175


>gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
 gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
          Length = 174

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 167

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +       NP+I+  S  F  ++EG  ++P   A V R   +TVR+++   + 
Sbjct: 61  DCSESRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
 gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
          Length = 167

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  +PDP+L R + P+ +I+ ++  L  +M+E MY+  GIGLAA Q+G  +RL+ +
Sbjct: 1   MTLSICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+    ++   +  +NP+I     +    +EGCLS+P++R+ V+R+A + V   D +   
Sbjct: 61  DISGPENQTELVTLVNPEIQWRDGETET-EEGCLSVPEFRSKVQRAAKVRVTGQDLDGNA 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK  + 
Sbjct: 120 VDMEADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKWQKQ 166


>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
 gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
          Length = 196

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V F DP+LR+V++ I     ++  L++NM E MY+  G+GLAA Q+G+  RL +I
Sbjct: 1   MILPIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMI 60

Query: 62  D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D             Q         VFIN KII  + +  V+ EGCLSIPD R DV R   
Sbjct: 61  DATGFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPES 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + YMD N +  +   DGL A  +QHE DH+ GILF D LS LKR ++  +++ + + R
Sbjct: 121 IKIEYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180


>gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287]
 gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287]
          Length = 196

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI+  + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + + +
Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180


>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 167

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++ + K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase
          Length = 164

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164


>gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87]
 gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87]
          Length = 196

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ ++PI+K    +  LI NM + MY+  G+GLAA Q+GV  RL VI
Sbjct: 1   MILPIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +    VFIN K+I  + D   + EGCLSIPD R D+ R   
Sbjct: 61  DAAPFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y D N + +     GL A  +QHE DH  GILF + +S LK+ +I  ++ K+   +
Sbjct: 121 VTIEYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKISSGK 180


>gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2]
 gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2]
          Length = 161

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR  ++ + K NS++  L+ +M E MY  DG+GLAA QIG+  R++V
Sbjct: 1   MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D     + +      +I  ++   V  EGCLSIP+   DVKR   I +   D    
Sbjct: 61  VDIGDETGLISMV----NPVIVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144


>gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 190

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D    +EGCLS P  +  +KR+ +  V   
Sbjct: 61  YKYANDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D N Q     A G  A  +QHE DHL+G L+++ L
Sbjct: 121 DGNGQPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155


>gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 205

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P++I P   L+  +RP+   ++ +  +L+  M   MY   GIGLAA QI  L RL V+
Sbjct: 36  LLPILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVV 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +  P+V INP II  S++ +  +EGCLS+P+  ADV R A I +RY D +   
Sbjct: 96  DVSPDDQKA-PLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSR 154

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K  + 
Sbjct: 155 REMEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAKEQRQ 201


>gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
          Length = 217

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +        EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                +   G  A CLQHE DHL G L+ID LS+  R    ++M
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQM 204


>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 190

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 11/178 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DPILR+ +  IE+    +  LI+NM + MY ++G+GLAA QIG   R+ V+
Sbjct: 1   MVLPIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVV 60

Query: 62  DLQDHAHR-----------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D +  A                 +FINPK I    D   + EGCLSIP+   DV R   I
Sbjct: 61  DCRPFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWKFTEGCLSIPNIHEDVTRPDGI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           T+ Y+D N         GL A  +QHE DHL+G LFID+LS  K+ +I+ K+  + + 
Sbjct: 121 TLTYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISKG 178


>gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 167

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  ++  +       NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSENRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEI 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHLNG L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 181

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + +F DP+LR  +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                ++  SD+     EGCLSIP    + +R+  +  +  + + +
Sbjct: 61  YWVDGIVGHLV------NPLLALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++    LLA  +QHE DHL+GILF+D L    R    + + +
Sbjct: 115 PVVLEGTELLARAVQHETDHLDGILFVDRLDPAARKAAMRAIRE 158


>gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 218

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     D        EGCLS+P    ++ R  +  VR  D  
Sbjct: 102 DCLDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAE 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R  + ++M++
Sbjct: 162 GNPITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207


>gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 172

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLE-SETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKVNRATRVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q   +  D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q 
Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168


>gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington]
 gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington]
          Length = 175

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L++ S+P+ +        + +MLE MY+ +G GLAAVQ+GVL R++V
Sbjct: 1   MSIYSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           ID++ H   + P  F    I+         +     EGC+S+P+ R +V R   + +RY+
Sbjct: 61  IDIKAHDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKLKNN 173


>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 188

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V+  IEK   ++  LI+NM E M + +G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60

Query: 62  DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D    A           +FINP I   S     + EGCLSIPD R DV R   IT+ Y D
Sbjct: 61  DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            N  H     +GL A  +QHE DH+ G LF D +S LK+ M+  K+  +V+ 
Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVKG 172


>gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 179

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V+ PD  L   +  +  IN  I  L+++M E MY+ +G+GLAAVQIGVL R+ V
Sbjct: 1   MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q    +  P           INP+I   SD+  + +EGCLSIP+   +++R  ++TV
Sbjct: 61  MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K  +  +
Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKRHYE 178


>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 282

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/164 (36%), Positives = 89/164 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILRR ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 90  LKIVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNP 149

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V INP++  +S     + EGCLS P   ADV R   + +   D N     
Sbjct: 150 VGERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFT 209

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   GL A   QHE DHL GILF D ++    D I  ++  L +
Sbjct: 210 VNLSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEK 253


>gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 200

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI+ +P+L + +  I   + ++  LI +M E + +++G+GLAA QIGV  R+ V
Sbjct: 10  MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69

Query: 61  IDLQDHAHRKNPMVFINPKII------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            + +D              ++          D     EGCLS+P     +KR+  +TV  
Sbjct: 70  FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +D   Q   + A+G  A  +QHE DHL G L++D L +      +KK  K  
Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDK----RWSKKWKKEQ 177


>gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
 gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
          Length = 196

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI+  + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + + +
Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180


>gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH]
 gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH]
          Length = 174

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P+ +L+++S+P+E+ + D+  L+D+M E M   +G+GLAA+Q+ V  R ++
Sbjct: 1   MAVLDIVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+ D   +++    I      F   D      EGCLS+PDY  +V+R   + V++ D  
Sbjct: 61  IDIGDEEGKQSKDTLIEVINPEFLTWDGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +  ++ A+GLL+   QHE DHL+G LF++ L  +KR    K+ 
Sbjct: 121 GKEHVMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164


>gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 249

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++ + + +  +  L+ +M+E MY+  G+GLAA Q+GV  ++  
Sbjct: 1   MSILRIRTIGDPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++                ++   +     EGCLS+P    +  R    T+  +D + +
Sbjct: 61  WGIEGDEGHVV------NPRLSVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---------SKLVQLRD 170
                A GLLA C QHE DHL G L++D L    R    +++          ++ + RD
Sbjct: 115 PVHRDATGLLARCFQHETDHLRGTLYVDRLEGEHRRDAMRQLRGEAFRATAERIARERD 173


>gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 163

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLS+P+     +R+ +      D +A+
Sbjct: 61  WNIDGEIG----YVLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDAK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  + L+A C+QHE DHL+G ++ID L R  R    + +  
Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRN 160


>gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 177

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L +  DP+L   + P++++ +    L+ +MLE M S  G+GLAA Q+GVL R+ V 
Sbjct: 1   MIRKLRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFVY 60

Query: 62  DLQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D        NP         INP      ++  + QEGCLSIPD  AD +R   + V  +
Sbjct: 61  DCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N  +    A GLLA C+QHE DHL+G+LFI  L++ +R    K++  
Sbjct: 121 DENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEIRN 169


>gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 167

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +       NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSESRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 190

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D     EGCLS P  +  +KR+ +  V+  
Sbjct: 61  YKFANDDGVPPAGVVVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D +       A    A  +QHE DHL+G L+++ L     D   +K  K  +
Sbjct: 121 DGDGNPVDFEATEWFARIIQHEYDHLDGKLYVNRL----MDRYARKAMKQAK 168


>gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 186

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 81/162 (50%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L+++M   MY+ +G+GLAA QIGV  R+ V D
Sbjct: 13  VRPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP++I          EGCLS+P   A  +R     V     + +  
Sbjct: 73  CPDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL+G +++D +S  +   + ++ ++
Sbjct: 133 RVLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAAR 174


>gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 172

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 120 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166


>gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 164

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 105/162 (64%), Gaps = 3/162 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  + +    +      +  +EGCLSIP+ RA V R+  + +R +D +     + A
Sbjct: 62  RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           DGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 119 DGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160


>gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E]
 gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii]
 gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22]
          Length = 175

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L++ S+P+ +        + +MLE MY+ DG GLAAVQ+G+L R++V
Sbjct: 1   MSIFSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++++          P+  +NP+II  S +     EGC+S+P  R +V R   + +RY+
Sbjct: 61  IDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKLKNN 173


>gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 172

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           ++ I    I       + +EGCLS P   A + R+  + ++ ++   
Sbjct: 61  IMYDNLE-SETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKINRATRVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q   +  D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q 
Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168


>gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 171

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M   P++ +PDP L R + P+E+ + ++ + + ++ E MY+   G+G+AA Q+  L R+V
Sbjct: 1   MAVLPILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIV 60

Query: 60  VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++D++                 +   +  +V +EGC+S+PD+  +V R+  I V+  D +
Sbjct: 61  LVDVRPKLGDDCHGFLCLINPELIAWEGMAVGREGCMSVPDFTGNVIRAERIQVQAQDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            + +I    G  A  +QHE+DHL+G LF+D L   K D+  +K  +  
Sbjct: 121 GRSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRKRYQQK 168


>gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 191

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + ++  L+D+M E M +  G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP +          D     EGCLS+P       R+ +  V   
Sbjct: 61  YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +     +   G  A CLQHE DHL+G L++  L         K + +
Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHARAAKKTVKR 169


>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
 gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
          Length = 154

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR  ++ + +I   +  L+++M+E MY  +GIGLAA Q+G+  R++V
Sbjct: 1   MAIRIIRTTGDPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD          +    I   +      EGCLS P    +V+R   +TVR  D +  
Sbjct: 61  IDVQDETGVLK----LINPEIISGEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I A GLLA   QHE+DHL+GILF+D ++RL
Sbjct: 117 TVEICASGLLARAFQHEIDHLDGILFVDKVTRL 149


>gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
 gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
          Length = 173

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P  +L+  + P+  I+  +  LID+M + MY+  G+GLAAVQ+    RLV+
Sbjct: 1   MTVLDIVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D   ++   V INP+++    +    QEGCLS+P+ R DVKR+A + V  +D   +
Sbjct: 61  YDVSDQREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +I A+GL A  LQHE+DHLNG L +D  SRLKR++  +K+ K ++ 
Sbjct: 121 PLVIDAEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIKQ 168


>gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14]
 gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14]
          Length = 216

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205


>gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1]
 gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22]
 gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1]
 gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A]
 gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22]
          Length = 184

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
 gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
          Length = 178

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+++    ++  LI++M + M++ +G GLAA QIGV  RLV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INPK+   S +     EGCLS+P  R  V R + +    
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D         ADG  A  +QHE DHL+GIL+   ++ L
Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDL 159


>gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2]
 gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 184

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549]
          Length = 174

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168


>gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
 gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
          Length = 162

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ + +P+LR VS+ + +I  +I  ++D M+E M    G+GLAA Q+G+  R  V ++ 
Sbjct: 2   KIIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVD 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +  +      INP+II F  +    +EGCLSIP     VKR   I VRY +   +    
Sbjct: 62  GNVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEE 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + + A   QHELDHL+GILFID +S L + +I+K+++++ +  +
Sbjct: 117 ELNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQIKKEGN 162


>gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2]
 gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2]
          Length = 171

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P+P+L++ + P++ I+ ++  +ID MLE MY+  GIGLAA Q+GVL R++V
Sbjct: 1   MSHMKIFTYPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D        NP + INP+I+         +  CLS+PD+ A+V R+A I V+ +D N +
Sbjct: 61  FDGSPREEGANPQILINPEIVAAEGSIKWDEA-CLSVPDFTAEVNRNANIQVKGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A  LLA CLQHE+DHL+GILFID +SR
Sbjct: 120 PLELEAKDLLAVCLQHEIDHLDGILFIDRISR 151


>gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4]
 gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4]
          Length = 154

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 1   MVKKPLVIFPD---PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + +V   D    +LR  ++P++KI   I  LI +M E MY   G+GLAA Q+GV  R
Sbjct: 1   MAVRKIVTLGDSGDKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+D   + ++      +  +            EGCLSIP    +V R+A + VR +  
Sbjct: 61  VIVVDTGSNLYQLINPEIVAREGEEKGR------EGCLSIPGVWGEVVRAASVLVRALTP 114

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +   I ADGLLA  LQHE+DHL+GILFID   ++
Sbjct: 115 EGREVSIEADGLLARALQHEIDHLDGILFIDRAEKV 150


>gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C]
 gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C]
          Length = 211

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 35  TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NPK++             EGCLS+P   A + R  +  V   D  
Sbjct: 95  DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200


>gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 183

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +F DP+LR  +  ++  + +   L+ N+ + M    G GLAA Q+GV  R+  
Sbjct: 1   MSIVPIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D           NP +    ++     EGCLSIP    D  R   +  +  +    
Sbjct: 61  FDVDD-----VIGHLANPVLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A CLQHE DHL+GILF+D L   +R    K++ 
Sbjct: 116 PMQIVGTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEIR 158


>gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1]
 gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1]
          Length = 214

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   D+  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TARPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V INPK++             EGCLS+P   A + R  +  V   D  
Sbjct: 98  DCPDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 158 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203


>gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel]
 gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel]
          Length = 175

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S  + ++       +D+ML+ MY  D  GLAAVQ+G+L R++V
Sbjct: 1   MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P  F    I+         +     EGC+S+P  R +V R   I ++Y+
Sbjct: 61  IDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKLKNN 173


>gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
 gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
          Length = 209

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 17/184 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V
Sbjct: 22  MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 81

Query: 61  IDLQDHAHRKN-----------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +++ +                       P   INPKI+  S +    +EGCLS+P Y   
Sbjct: 82  MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 141

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + R   I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ 
Sbjct: 142 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 201

Query: 164 KLVQ 167
           K  +
Sbjct: 202 KKER 205


>gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
 gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
          Length = 165

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR V++ + K   ++  L+++M + MY  +G+GLAA QIG+  R++V
Sbjct: 1   MSIRIIVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +V     +I  S+      EGCLSIP+   DV R+  + V   D N  
Sbjct: 61  VDIGEEESGLIEVV---NPVIVLSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 118 PIEVDASGFLARAFQHEIDHLNGILFTD 145


>gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 199

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 79/162 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 31  VRPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFD 90

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 91  CPDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPV 150

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++  G  A CLQHE DHL G ++ DHLS  +   + +++++
Sbjct: 151 TLHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVAR 192


>gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 216

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 164

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +   + E   ++P   A +KR   +TVR+++   +
Sbjct: 61  VDGSAERGRA--VRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFLNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162


>gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 188

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R I + +  +  L+++M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+          D     EGCLS P       R+ +  V   
Sbjct: 61  YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D       +   G  A CLQHE DHL+G +++D L         K + K
Sbjct: 121 DVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169


>gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 209

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 33  TARPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVY 92

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     D        EGCLS+P   A + R  +  VR  D  
Sbjct: 93  DCPDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAE 152

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 153 GKPIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198


>gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 180

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +R +   + + +   I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NPMV INP II  ++  SV +EGCLS+P+  A+V R   + VRY D   +   
Sbjct: 74  ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I  DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179


>gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277]
 gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277]
          Length = 189

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VI
Sbjct: 1   MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                V IN  I    +D     EGCLS+P     V+R   I +RY+D
Sbjct: 61  DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++ +
Sbjct: 121 EDFQPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173


>gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 210

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 3/165 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ +  +P+L +    +     ++  L+D+M     + +G+GLAA Q+GV  ++ V D
Sbjct: 35  VLPITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYD 94

Query: 63  LQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            QD    ++  V  NPK+              EGCLS+P   A   R+ +  V   D + 
Sbjct: 95  CQDDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHG 154

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 155 NAIKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199


>gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 190

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L R +  ++  +  +  L+ +M E     +G GLAA QIG+  R+ V
Sbjct: 1   MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++        V +NP ++       + D     EGCLS+P     +KR+ ++ V   
Sbjct: 61  YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D         A G  A C+QHE DHL+G L++D L     D   +K  ++ + +
Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRLV----DRYQRKARRIAKDK 170


>gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 216

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118
           D QD   R++  V  NPK++    D     E    CLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 216

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+ +  +P+L +  + + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V 
Sbjct: 40  TSLPITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NPK++             EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 167

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  +++ + ++N     L+ +M E MY+  G+GLAA Q+ V  +++V
Sbjct: 1   MAILQILQYPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +   + ++      I         +EGCLS+P    +V+R+  I+VR ++   +
Sbjct: 61  V---DVSETHDELLVFINPEILHRSGEQEGEEGCLSVPGIYENVRRADKISVRALNQQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+G LA C+QHE+DHL+G +F+++LS+LK+  +  K+ K  + 
Sbjct: 118 SFTLDAEGFLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKKRRRE 165


>gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  ++++  L+D M ++MY TDGIGL+A Q+G+  +L+V + 
Sbjct: 87  LKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNA 146

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP++  +S     Y+EGCLS P    DVKR   + V   D N     
Sbjct: 147 AGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFE 206

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +K+  L +  +
Sbjct: 207 ISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYE 253


>gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
          Length = 198

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+   PI K   ++  LI++M + MY ++G+GLAA Q+G+  RL V+
Sbjct: 1   MILPIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +                      FIN KI+    +   + EGCLSIP    DV R   
Sbjct: 61  DTEPFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D +         GL+A  +QHE DH+ GILF DHLS  K+ ++  K++ +   +
Sbjct: 121 IVIEYQDEHFATHTETFSGLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNISNGK 180


>gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 168

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +++  +  +  +I  L  NM E MY+  G+GLAA Q+ V  R+VV
Sbjct: 1   MAILNILRYPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++ ++ +    I  S   S  QEGCLS+P     V R+  ITVR  D + +
Sbjct: 61  I---DTSETRDELLVLINPEIIASTGKSETQEGCLSVPGIFDKVSRAEQITVRATDIDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA C+QHE+DHL G +F+++LS  K+  I  K+ K  + +
Sbjct: 118 SFEMDATGLLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKKQARKQ 166


>gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
 gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
          Length = 194

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 13/180 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DPILR+ +R IEK   D+  L ++M E M+  +G+GLAA QIG+  R+ V+
Sbjct: 1   MIYPIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVV 60

Query: 62  DLQDHAHR-------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D    A R                  FINP+I+  + +   ++EGCLSIP  R DV R  
Sbjct: 61  DGTPFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPE 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +RY D +         G+ A  +QHE DHL G LF+D+L  LK+  I KK++ + + 
Sbjct: 121 TLRIRYRDLDWNEHEETYSGMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISKG 180


>gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83]
 gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83]
          Length = 189

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VI
Sbjct: 1   MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                V IN  I    +D     EGCLS+P     V+R   I +RY+D
Sbjct: 61  DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++ +
Sbjct: 121 EDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173


>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
 gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
          Length = 170

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ V  P+  +N D   +ID+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  ++  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILDAEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKVKKQME 167


>gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 216

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +    +++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA QIGV  RL V
Sbjct: 1   MTVLPVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D   + EGCLS P     ++R+ +  V+  
Sbjct: 61  YKYANDDDVPEQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N       A G  A  LQHE DHL+GIL+++ L         K+  K
Sbjct: 121 DGNGNALDFEATGWFARILQHEFDHLDGILYVNRLVDRYSKKALKQAKK 169


>gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 163

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 188

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + +F DP+L   + P+   + ++  L+ ++ E M    G GLAA QIGV  R+   
Sbjct: 8   TVQAIRLFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTW 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +               +  SD+     EGCLSIPD     KR+  +  +    + + 
Sbjct: 68  NVDNELGHLV------NPTLDLSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +    +LA C+QHE DHL+G+LFID L R  R    + + 
Sbjct: 122 VEVEGSEMLARCIQHETDHLDGVLFIDRLDREWRKKAMRAIR 163


>gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera
           sp. (strain APS)
 gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 173

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+++IN  I  + ++M++ MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++  +          +    I   +     +EGCLSIP+Y+A + RS +I V+ ++ + +
Sbjct: 61  VNTMEQKKNNL---VLINPKIIKKEGDISIEEGCLSIPEYQASIPRSNYIQVQAVNLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I A  +L+ C+QHE+DHL G LFID+LS+ KR+ I KK  K+ +
Sbjct: 118 KIEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKINK 164


>gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 196

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L+  ++ I+K   ++  LI NM E M+   G+GLAA QIG+  R+ ++
Sbjct: 1   MVLPIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FINP I+  S D   + EGCLSIPD R DV R   
Sbjct: 61  DASPFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I V Y D + +   +   GL A   QHE DH+ GILF D LS LK+ +I  K+  + + +
Sbjct: 121 IKVEYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKLLNISKGK 180


>gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 182

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + +P+L+   RP+E  +  +  L +NMLE MY+ +GIGLAA Q+ +  +LVVI
Sbjct: 1   MLLEIAQYGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVI 60

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D+                        +     ++        + EGCLS+   RA V R 
Sbjct: 61  DIPKEEESVTWLKVNGEDKELSDIMPLMFANPVLEPYGPMHPFHEGCLSVMKIRASVVRP 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            F+    +  + +   I  +GLLA CLQHE DHLNGILF++ +S  ++  +  K+ +L 
Sbjct: 121 DFVKATVLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179


>gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366]
 gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366]
          Length = 186

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++ + DP+L++V  PIE+   D+  LI NM E MY+  G+GLAA Q+G+  RL ++
Sbjct: 1   MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    +    K   VFIN +I+  + +   + EGCLSIPD R DV R   I ++Y D + 
Sbjct: 61  DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +       G+ A  +QHE DH+ G LF D LS L++ M+  K+  + + 
Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKLDAISKG 169


>gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18]
 gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18]
          Length = 171

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRKILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +V INP+II  ++  +  +EGCLS+P + A+V+R A + V+ ++ + + 
Sbjct: 61  DVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170
            +I AD LLA   QHE+DHL+G+LFIDHLS LK+ +  K+  + L + ++
Sbjct: 120 VVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALEEAKE 169


>gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae
 gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae
          Length = 171

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 4   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 63  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 120 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169


>gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 161

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+    DP+LR  +  +   + ++  L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP+I+  S++     EGCLSIP   A   R+    V   D + +
Sbjct: 61  Y-----NVDGRIGHVVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GL+A  LQHE+DHL+G +F+D L+   R    + + 
Sbjct: 116 PVRLEGTGLMARALQHEVDHLDGKVFLDRLTGDARKAALRALR 158


>gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno]
 gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno]
          Length = 193

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I     ++  LI NM + M    G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI   + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y+D + + Q +  DGL A  +QHE DH+ GILF D LS  K+ +I  K++ +++ +
Sbjct: 121 ITIEYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMKGK 180


>gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 167

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +E  +S I  LID+ML+ +Y   +GIGLA+ Q+G    +V
Sbjct: 1   MTVLKILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL D+     P++ +NP++++ S      +  CLS+PDY A+V+R   + V   D + 
Sbjct: 60  IIDLSDNRDE--PLILVNPEVVSGSHKALGQEG-CLSVPDYYAEVERYTSVVVSAQDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL G LFID+LS LKR M  KK+ K ++ R
Sbjct: 117 NSITIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166


>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
 gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R ++P+ +    ++  L+D+M + M + +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP +   S+      EGCLS+P  R  V R + +  + 
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +D N +      +G  A  +QHE DHL GIL+   +   +R
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRR 161


>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 170

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 101/162 (62%), Gaps = 3/162 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ V  P+ ++N +   +IDNM + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+
Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159


>gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 184

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 76/162 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L    R +     ++  L+D++   MY   G+GLAA Q+G   R+ V D
Sbjct: 16  VRPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYD 75

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+ +          EGCLS+P   A  +R     V       +  
Sbjct: 76  CPDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPV 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++  G  A CLQHE DHL+G ++ D L+  +   + ++  +
Sbjct: 136 TVHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADR 177


>gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 165

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+E I  ++  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MAVRRCLPWPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR+++   +
Sbjct: 61  VDASE--TRGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +     GL AT +QH++D L G LF+D LS++KRDM+ +K  KL 
Sbjct: 119 MEERDFVGLWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164


>gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 173

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 5/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML+ MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +  +            I   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSEERNEPQ---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K +++++
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169


>gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 169

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + ++ DP+L   +  I +    +  L  +MLE M    G+GLAA QIGV  R+  
Sbjct: 1   MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP+     ++  +  EGCLSIP      +R + + +R  D   +
Sbjct: 60  VFDCSHFQHGLRGAVINPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + A GL+A C+QHE DHL+G+LF+  LS   R    K + 
Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLSDELRKESMKTIR 162


>gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
 gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 171

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P++++ +    LIDNM+  MY + GIGLAA Q+    R++V
Sbjct: 1   MKLLKILEFPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +       I    + S Y+EGCLS+P +  ++ R   I V Y+D + +
Sbjct: 61  IDISEERDDPQ-VFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q +  +GLLA  +QHE+DHL GIL +D++S +KR  I +K+ K  + +
Sbjct: 120 KQTLMPEGLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQKSAKEK 168


>gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
 gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
          Length = 181

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V+F  P+LR   R I     ++  LI++M   +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIV 60

Query: 62  DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                 FINP+I   S++  +Y+EGCLS+P     V+RS  I +RY+D
Sbjct: 61  DCTPWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +       GL A  +QHE DHL G++F D LS L+R++I  K+  L + R
Sbjct: 121 ENFEPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173


>gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21]
 gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21]
          Length = 177

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 3/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ ++
Sbjct: 1   MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFIV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    +        INP I   +D+  V  EGCLS+PD+  +V+R   IT++Y +  
Sbjct: 61  NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+  K  + +
Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKKQRKSK 171


>gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 167

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L +V++ +E+IN     L+ +M E MY+  GIGLAA Q+    RL+V
Sbjct: 1   MAILPIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               +  S      +EGCLS+P     V R+ F+TV  +D + +
Sbjct: 61  IDVSETHDDL---KVFINPELVDSMGDKENEEGCLSVPGIYEKVTRAEFVTVNALDEHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F++ LS LK+  I  K+ K  + 
Sbjct: 118 PFTLNAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKKQRRE 165


>gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
 gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
          Length = 169

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 98/168 (58%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+P+LR++S+PIE  +  +  L+D M E M + +G+G++A+Q+    R ++I
Sbjct: 1   MMLEVITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            L D    ++    +        +     ++ EGCLS+P++  +VKR + + + Y +   
Sbjct: 61  CLPDEEGNQHKENLLEIINPEIIEKNGEILFNEGCLSVPEFYEEVKRYSSLKIHYQNRYG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++  + A+  LA  LQHE+DHLNGILFID LS +KR    K++ +  +
Sbjct: 121 ENLQLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQKRK 168


>gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake]
 gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake]
          Length = 185

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 14/181 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L   S  + +++  +  L+D+M E M+   G+GLAAVQ+G+  R++V
Sbjct: 1   MSVLPIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLV 60

Query: 61  IDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           +D+ +                    P   INPKI+  S +    +EGCLS+PDY   V R
Sbjct: 61  VDVPEEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++TV+Y+D N    II A G LA CL+HE+DHLNGI+F+ +LS+ KRD    K+ K+ 
Sbjct: 121 PQYVTVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKMR 180

Query: 167 Q 167
           +
Sbjct: 181 K 181


>gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 163

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245]
 gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245]
          Length = 185

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ I+ D +LR+ + P+E ++ ++  L+ NM E MYS  GIGLAA Q+G   RL+V 
Sbjct: 1   MIVPINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVL 60

Query: 61  -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I          PMV INP+I+      S+ +EGCLS+P  + DV R + I++ Y D + 
Sbjct: 61  DISCMREYANVKPMVVINPEIVAVKGYRSM-EEGCLSLPGLQGDVVRPSSISLNYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q     GLLA  LQHE+DHL+G LF+D L + +R  + K++  L   R
Sbjct: 120 EGQNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169


>gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823]
 gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823]
          Length = 198

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 14/181 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ +  I+    ++  LI++M E MY   G+GLAA QI    RL V+
Sbjct: 1   MILPIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVV 60

Query: 62  DLQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D                         VFINP I   + +   + EGCLSIP  R +V R 
Sbjct: 61  DGSPFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRK 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I + Y D N Q    + DG  A  +QHE DH+ G+LF DHLS LKR +++K++  + Q
Sbjct: 121 EKIRITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180

Query: 168 L 168
            
Sbjct: 181 G 181


>gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 181

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D              ++  S++     EGCLS P   AD +RS  +  +  D + +
Sbjct: 61  YHADDEIGHLV------NPVLDLSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I      A  +QHE DHL+G+LFID L + +R +  K + +
Sbjct: 115 PITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVRE 158


>gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101]
 gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101]
          Length = 196

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V   I     ++   I NM E MY+  G+GLAA Q+G+  R+ VI
Sbjct: 1   MILPIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI+    +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y + +   +    DGL+A  +QHE DH+ G+LF D +S LK+ +I KK+  + + +
Sbjct: 121 VTIEYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITEGK 180


>gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 187

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 80/162 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L     P+     ++  L+++M   MY+ +G+GLAA Q+GV  R+ V D
Sbjct: 13  VRAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +    
Sbjct: 73  CPDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G ++ DH++  +R  + + + K
Sbjct: 133 RVEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174


>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
 gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
          Length = 178

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + +  DP+LR+ ++ +E  + ++ +++D M   MY  DG+GLAA Q+G+  R  ++D +
Sbjct: 2   EIRLIGDPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSR 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   +V     II F  +   ++EGCLSIPD   DV R   + VRY D +      
Sbjct: 62  EENEKGKKVVINPE-IIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEE 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G  A   QHE DHL GILF D L  +K+  + K++++L++
Sbjct: 121 ELHGYQARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163


>gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
 gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
          Length = 184

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++I P P+LR V+R +   +   I   +  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 17  PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    + PM+ INP+II+ SD  +  +EGCLS+P+  A+V R   I VRY +   +   
Sbjct: 77  AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182


>gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365]
 gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365]
          Length = 175

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++PD  LR+ +R +E+++  + +L  N+++ MYS +G+G+AAVQIG   ++ +
Sbjct: 1   MAVLPIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFI 60

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++           P+ FINP+++  S+D    +EGCLS P     V R A   VR +  +
Sbjct: 61  VEPALAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGID 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +   + A+GL A CL HE DHL G L +D +  LKR MI +K+++ 
Sbjct: 121 GEIFEVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNRQ 167


>gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 162

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR    PI  I+  + +L++++LE +      GLAA QIGV  R   
Sbjct: 1   MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    D++    EGCLS+P       R+ +  V   D + +
Sbjct: 61  WNIDDEIG----YVLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++    L+A CLQHE+DHL+G+L++D L R  R    + + + 
Sbjct: 117 EVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIREQ 161


>gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 205

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 17/180 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   +  +  L+D+M+E MY+  G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60

Query: 61  IDLQDHAHRKNPM-----------------VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            D     +R +                     +   ++         QEGCLSIP     
Sbjct: 61  FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANPVLELGPGEQNDQEGCLSIPGLHYA 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             R+A  TVR +D           GLLA CLQHE DHL G L++D L+ L R    + + 
Sbjct: 121 TARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRALR 180


>gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14]
 gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14]
          Length = 184

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP II    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENFVEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLKGK 173


>gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 167

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ ++S +  LID+ML+ +Y + +GIGLAA+Q+G    +V
Sbjct: 1   MAVLDILTAPDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL ++     P++ +NP++++ SD     +  CLS+PDY ADV+R   + V  +D   
Sbjct: 60  IIDLSENRDE--PLILVNPEVVSGSDKAMGQEG-CLSVPDYYADVERFTSVVVSALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 117 NQITLESDDFLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164


>gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 184

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V++  PILR++S  I     ++   I ++ + M   DG+GLAA Q+G   R+ V+
Sbjct: 1   MFLPIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D       D   +     FIN  I+    D     EGC+SIP    DVKR   I + YMD
Sbjct: 61  DANAFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              Q       G+ A  +QHE DHL GILF DHLS LK+ ++  K++ +   +
Sbjct: 121 EQGQEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNISTGK 173


>gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 168

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68]
 gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227]
          Length = 164

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +   + A
Sbjct: 62  RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           DGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 119 DGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2]
 gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2]
          Length = 174

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P  +L + +  +E I+  ++ L+++M E M+   G+GLAA Q+G   R++V
Sbjct: 1   MALLEIYQYPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIV 60

Query: 61  IDLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            + Q  +   N         INP+II  S       E CLS+PDY  +VKR   +TVR +
Sbjct: 61  YNPQAGSSNANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   +     A GLLA  +QHE+DHL+GIL+ID +S LKR+M  KK+ K
Sbjct: 121 NLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169


>gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 168

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+   +  + NL+ ++L+ + +  GIG+ A  IG+  R+VV
Sbjct: 1   MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    +INP+I+  S +   + EG +S+P    +V+R A + VRY D +  
Sbjct: 61  LELSAEDGVRA---YINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +  ADGL A C QHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161


>gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 171

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M   P++  PDP L+  +  +   +  + + ID+ML+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLPILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +      +    +    +  + QEGCLS+PDY ADV+R   + V+  D   
Sbjct: 60  VIDLSEARDQPL---ILVNPKVVCGKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 117 NAIKVESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKKHIK 164


>gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 193

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++ +P+L R + P+ +   ++  L+ +M E + +++G+GLAA QIGV  ++ V
Sbjct: 1   MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60

Query: 61  IDLQDHAHRKNPMVFINPKII------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D              ++      T + D S   EGCLS+P     +KR+  +TV  
Sbjct: 61  YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N Q   +  +G  A  +QHE DHL+G L++D L         K+  K
Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKK 170


>gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 162

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR     I  I+  +  L+D+++E +      GLAA QIGV  R   
Sbjct: 1   MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    D +    EGCLS+P       R+ +  V   D +  
Sbjct: 61  WNIDDEVG----YVLNPRIVELSEDTYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDLDGA 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++    L+A CLQHE+DHL+G+L+ID L R  R    + + 
Sbjct: 117 EVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVRKKAMRAIR 159


>gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 171

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VV
Sbjct: 1   MALLTVLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +     VFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ ++   +
Sbjct: 61  IDVSDDQNELM--VFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA CLQHELDHL G +F+++LS LK+  I++KM K ++ 
Sbjct: 119 EFELEADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKKRLKE 166


>gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 215

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI  DP+LR+ +  + + +  ++ L+ +M + M  ++G+GLAA QIGV  R+ V 
Sbjct: 1   MIHPIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVF 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-------------CLSIPDYRADVKRSA 108
           D  D   ++  +V     +I         +               CLS P    + KR  
Sbjct: 61  DAPDEDEQRRGVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHY 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            + V   D + +  +I  +G  A  LQHE DHL+G+L++D L    +    
Sbjct: 121 AVRVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRLKGRDKAEAR 171


>gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18]
 gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18]
          Length = 168

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  KP+V +PDPIL++V  P++ I+ +I  L++++++ M++    +G+AA Q+GV  R+ 
Sbjct: 1   MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           VID+  + H K        +    I      +V +EGC+S+PDY  DV+R+  +T+R+ +
Sbjct: 61  VIDVSKNRHGKENNHGLLLMINPEILAKSGAAVMREGCMSVPDYTGDVERATELTLRFTE 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 121 PDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
 gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
          Length = 258

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 92/169 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V +PDPILR  ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V 
Sbjct: 65  APLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 124

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  D     + +V +NP++  +S    ++ EGCLS P   ADVKR   + +   D N   
Sbjct: 125 NPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGAR 184

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +   GL A   QHE DHL GILF D ++    D I   +  L +  +
Sbjct: 185 FTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYE 233


>gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233]
 gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233]
          Length = 190

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P+VI  +P+L R +RP+ +    ++  LI +M E   +  G GLAA QIG   RL 
Sbjct: 1   MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60

Query: 60  VIDLQDHAHRKNPMVFINP----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           + D  D   R+   +         I T   D     EGCLS+P       R+ +  V+  
Sbjct: 61  IYDCPDQGSRRRGYIINPTIETSPIPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D + +   +   G  A CLQHE DHL+G L+ID L    +    K + +
Sbjct: 121 DSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKNQKRAFKAVRE 169


>gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 172

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+ I  ++  +  +EGCLS+P + A+V+R A I V+ ++   + 
Sbjct: 61  DVSGKDETPELIVAINPE-IVHAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  +
Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162


>gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
 gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
          Length = 177

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V++PD  L+ +S+P+E+ + ++  L+D+M E M + +G+GLAA+Q+ V  R ++I
Sbjct: 1   MIRDIVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALII 60

Query: 62  DLQDHAHRKNPMVFIN--------PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           ++      ++P V             +I  ++  + YQEGCLS+P Y  +V+R   + + 
Sbjct: 61  NVPVDTDSEDPRVQQPKENTLEVINPVILDAEGKTRYQEGCLSVPGYFEEVERYKAVRIE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y D   +  I+  D  LA  +QHE+DHL G LFI+ LS LKR    K+  K ++ +
Sbjct: 121 YQDRYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKKRLRGK 176


>gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21]
 gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21]
          Length = 172

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+ I  ++  +  +EGCLS+P + A+V+R A I V+ ++ + + 
Sbjct: 61  DVSGKDETPELIVAINPE-IVHAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  +
Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162


>gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
          Length = 188

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 17/184 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V
Sbjct: 1   MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 60

Query: 61  IDLQDHAHRKN-----------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +++ +                       P   INPKI+  S +    +EGCLS+P Y   
Sbjct: 61  MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + R   I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ 
Sbjct: 121 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 180

Query: 164 KLVQ 167
           K  +
Sbjct: 181 KKER 184


>gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia
           alni ACN14a]
 gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia
           alni ACN14a]
          Length = 224

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             + + +  +P+L R  R I +    ++  LID+M   MY  +G+GLAA QI V   L V
Sbjct: 40  TIRRITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFV 99

Query: 61  IDLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D  D    ++     NP++             +EGCLS+P    +V R     VR  D 
Sbjct: 100 YDCTDEDGVRHVGHLANPELEESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDA 159

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 +   G  A CLQHE DHL G L++D LS   R    K+M +  + 
Sbjct: 160 TGAPLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAEE 210


>gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395]
 gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33]
 gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33]
 gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 210

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D 
Sbjct: 36  LPITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDC 95

Query: 64  QDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           QD    ++  V  NPK+              EGCLS+P   A   R+ +  V   D +  
Sbjct: 96  QDDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGN 155

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 156 AIKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
 gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
          Length = 184

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 EDFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLKGK 173


>gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126]
 gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126]
          Length = 185

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 4/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L+   + I+K   D+  L+D+M E MY+ +G+GLAA QIG   RL VI
Sbjct: 1   MIYPIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVI 60

Query: 62  D----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           D      +    K    FINP+I+    +   ++EGCLSIP+ R DV R   I ++Y D 
Sbjct: 61  DTDPIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           N        DG +A  +QHE DH+ GILF DH+S  K+ ++  K++ + + +
Sbjct: 121 NWNEHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172


>gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252]
 gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252]
          Length = 189

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 9/159 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DPILR  ++P+   + ++  L+D+M+E M++  GIGLAA Q+G   R+ V+
Sbjct: 1   MVLPIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVV 60

Query: 62  DLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           DL                 PM FINP+I+  S++   ++EGCLSIPD R  V+R   + +
Sbjct: 61  DLTPMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRI 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           RY+D   + Q + A G+LA  +QHE DHL GILFID +S
Sbjct: 121 RYLDRQFRPQELEARGMLARVIQHEYDHLEGILFIDRIS 159


>gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++LE +Y   +G+GLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL ++         +    +    +  + QEGCLS+PDY ADV+R   + V  +D N 
Sbjct: 60  VIDLSENRDEPL---VLVNPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRNG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 117 KELRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++LE +Y   +G+GLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL ++         +    +    +  + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSENRDEPL---VLVNPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 117 KPLRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 169

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDP L  +  P+ +   D+  LI NMLE MY   G GLAA Q+GVL RL V
Sbjct: 1   MSLLPIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +NP+V +NP I+  + + +  +EGCLSIPD    V R   I VR+ D    
Sbjct: 60  MDVDWKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                 DG  A C+QHE DHL+G +  DHLS   R    +  
Sbjct: 120 VNEQCFDGFAARCIQHEYDHLDGRVTFDHLSPEMRRTAQQHY 161


>gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +   ++  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
          Length = 164

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +   + A
Sbjct: 62  RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 119 EGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
 gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
          Length = 170

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ + K + ++  L+D+M E M +  G+GLAA+Q+ V   +++I
Sbjct: 1   MVREVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLII 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + D    +     I      IT  D   V+ EGCLS+P +  DVKR+  I V Y D   
Sbjct: 61  LIPDENDIQAKDSLIEAINPKITHKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +Q +  +  LA   QHE+DHL G LFI+ LS +KR    K+  K  + +
Sbjct: 121 NNQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKKSQKSK 170


>gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
          Length = 167

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVV
Sbjct: 1   MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+Q          +I      I         +E CLS+P     V+R+A++ VR  +  
Sbjct: 61  IDVQPKEDSFQKRAWIELVNPEIVARSGVQREREACLSLPGLSGVVERAAYVRVRAQNRY 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            +   I    LLA CLQHE+DHL+GILF D+L   + + 
Sbjct: 121 GEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEEIER 159


>gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166


>gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25]
 gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPMTIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 81  LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   
Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 201 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247


>gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
           Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
 gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
 gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
 gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
 gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
          Length = 273

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 81  LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   
Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 201 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247


>gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 158

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDPILR  +  + K NS++  L+D+M + MY  DG+GLAA Q+G+  R++V
Sbjct: 1   MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D       +  INP+II    +   Y EGCLSIP  + DV+R  +I +R  D N  
Sbjct: 61  MDCGDG-----LIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + AD LL+ C QHE+DHLNG+LFID   ++ +
Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFIDVADKVYK 150


>gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 169

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 94/168 (55%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ FP P+L+  ++ ++ I+ D+ +++ +M E MY  +G+GLAA QIG+   ++VI
Sbjct: 1   MVREIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D             +    +  ++    Y+EGCLS P    +V R + + V+ +D N + 
Sbjct: 61  DTSKKEDSPLLKAVMINPELLEAEGEVKYKEGCLSFPGLSVEVSRYSKVKVKALDINGEE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ++   +G  A   QHE+DHL GI FID ++ +KR +   K +KL + +
Sbjct: 121 KLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKLQKEK 168


>gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 215

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  +P+L R +  + + + ++  L+ +M E   + +G+GLAA QIGV  R+ +
Sbjct: 1   MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
             + +          INP + T              EGCLS+P     +KR+    V  +
Sbjct: 61  WKMDNEDGVPARGHIINPTVRTSRIPQERPDPREETEGCLSVPGESFPLKRAERAHVVGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHLNG L++D L   +     K + +
Sbjct: 121 DLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLDDRQAKKARKAVKR 169


>gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586]
 gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+         +    +    +  + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSDNRDEPM---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLCIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 171

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ I   +  LID+MLE +Y + +GIGLA+VQ+G    +V
Sbjct: 1   MAVLEILTAPDPRLKITAEKVQDI-ESVQKLIDDMLETLYSTDNGIGLASVQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL D+  R  P++ INP++++ S+     +  CLS+PDY A+V+R   + V  +D   
Sbjct: 60  IIDLSDN--RDQPLILINPEVVSGSNKALGQEG-CLSVPDYYAEVERYTSVVVSALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q   I +D  LA  +QHE+DHL+G LFID++S LKR M  KK+ K V+
Sbjct: 117 QRITIESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164


>gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
 gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
          Length = 197

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +  F +P+LR+V+ PI +IN +I  L++ M++ MY  +GIGLAA Q+G   R+ VID
Sbjct: 7   ILDVKKFGNPVLRKVAEPISEINDEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVID 66

Query: 63  LQDHA-----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                             K P+  INP+II+ S +   ++EGCLSIP   A V R + I 
Sbjct: 67  THFEDETYGSDGEKLLCPKMPLALINPEIISTSGEDISFEEGCLSIPQINAAVVRPSNIV 126

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           ++      +       GL + C+QHE+DHL+G+LF D   +    ++ KK+ +L 
Sbjct: 127 LKAQTLEGEIIEADFGGLTSRCMQHEIDHLDGVLFTDKAEKDDLKLVAKKLEQLR 181


>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 81  LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   
Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 201 ISLSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247


>gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
           bacterium]
          Length = 185

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 18/184 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PDP LR  ++ ++ +N     L+ NM E MY+ DGIGLAA QI    ++VV+
Sbjct: 1   MILPILHYPDPRLRTKAKEVDAVNDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVM 60

Query: 62  DLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           D+ D                    + ++  +      IT       + EGCLS+P ++A+
Sbjct: 61  DVPDSQDDYELLLKNRKNDSDKETNIQHHPLCFINPKITTISGHEKHIEGCLSVPGFQAE 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V+RS  IT+  ++   +   ++A  LLA C+QHELDHL GILF+D+LS+LK+  + +K  
Sbjct: 121 VERSNQITIEALNEQGESFTLHASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTK 180

Query: 164 KLVQ 167
           K+++
Sbjct: 181 KVIK 184


>gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 162

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
            +    DP+LR  + P+ + + ++  LID M +VMY+ DG+GLA  QIGV  R+ V D+ 
Sbjct: 3   EIRHIGDPVLRTPAEPVTEFDRELRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVYDIV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
               H  NP + I+      +++  +      +     A   R+A +T+R  D   +   
Sbjct: 63  NRKGHVVNPELTIDDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRLGRPIT 122

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           + A G+LA C QHE DHLNG L++D L + +R  I 
Sbjct: 123 VKARGMLARCFQHEFDHLNGTLYVDRLPKEERRRIL 158


>gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301]
 gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301]
          Length = 185

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++I PD  LR  +R +   +  D+  L+  M   MY   GIGLAA QIGV  RLVV+DL
Sbjct: 14  EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +K PMV INP+I   S++    +EGCLS+P   A+V R   I+V + D + + + 
Sbjct: 74  APD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ +
Sbjct: 133 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 178


>gi|257464084|ref|ZP_05628468.1| polypeptide deformylase [Fusobacterium sp. D12]
 gi|317061604|ref|ZP_07926089.1| polypeptide deformylase [Fusobacterium sp. D12]
 gi|313687280|gb|EFS24115.1| polypeptide deformylase [Fusobacterium sp. D12]
          Length = 173

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + D +LR+++  +E++N +I  ++ NM+E MY+ DG+GLAA Q+G+  R+  +
Sbjct: 1   MIYEIKKYGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMF-V 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                    N    INP I   +++    +EGCLSIP     V+R A + + Y +   + 
Sbjct: 60  CDIGTPEESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEF 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 VEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166


>gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603]
 gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573]
 gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+         +    +    +  + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSDNRDEPM---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I +   LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLKIESSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|153836422|ref|ZP_01989089.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|149750324|gb|EDM61069.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 SPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170]
 gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170]
          Length = 196

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V + IEK    +  LI+NM E MY+  G+GLAA QIG+  RL ++
Sbjct: 1   MVLPIVAYGDPVLRKVGKEIEKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                       VFIN K+   + +  V+ EGCLSIP+ R DV R   
Sbjct: 61  DATPFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTRKDT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D N + Q    DG+LA  +QHE DH+ GILF D LS LK+ ++  +++ + + +
Sbjct: 121 ITITYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKLSSLKKRLLKGRLANISKGK 180


>gi|254486314|ref|ZP_05099519.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214043183|gb|EEB83821.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 159

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +VI+PD  L +V +P+E I   I  LI +M + MY+  G GLAA Q+G   R+ V
Sbjct: 1   MSVLDIVIWPDARLTQVCQPVEGITPGITQLIADMFDTMYAAPGRGLAAPQVGRSERIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D         P+  +NP+II  S+     +EGCLSIP+   D++R+A +T+R+ D    
Sbjct: 61  FDAGWKDGAPTPVACVNPEIIDLSEGRLTGEEGCLSIPNTPMDIERAAQVTLRWTDPEG- 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                  G  A  +QHE DHL+GI+  D + +  + 
Sbjct: 120 THERTFTGAEAVIVQHEYDHLDGIVIYDRVEKDVKK 155


>gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|25452910|sp|Q8NQ46|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
 gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 169

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   +  +   +  +  LID+M + M    G+GLAA Q+GV  R V 
Sbjct: 1   MAVREVRLFGDPVLVSRADEVVDFDESLSTLIDDMFDTMEDAGGVGLAANQVGV-LRRVF 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP     ++D    +EGCLSIPD  A+  R   + +   D +  
Sbjct: 60  VFDTSHQEGGLRGHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSGQDRDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                A+GLLA C+QHE DHL+G+LF+  L   +R    
Sbjct: 120 PVGFVANGLLARCIQHETDHLDGVLFLKRLDPAERKAAM 158


>gi|227503564|ref|ZP_03933613.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
 gi|227075600|gb|EEI13563.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
          Length = 171

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  + ++ DP+L   +  I   +S +  L  NML+ M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MAELDIRLYGDPVLSSRAEEITTFDSSLRTLAQNMLDTMDAAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D           V INP      +D  V  EGCLSIP   AD  R   + V   D   +
Sbjct: 61  YDCSP-IQAGLRGVLINPVWTPLGEDMQVGPEGCLSIPGISADTPRHNRVFVSGRDVEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GLLA C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163


>gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
 gi|212672730|gb|EEB33213.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P   L+    P+ +I  +I  L  +MLE MY   G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPAASLKEKCVPVTEITDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPK-IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       K P V INP+  ++     S  +       +YRADV+R+  + +RYMD + +
Sbjct: 61  DPAAQDEEKQPRVVINPELTLSEETVLSRQEGCLSVPLNYRADVQRAERVHLRYMDLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +G  A  +QHE DHL+G LFID + RL+R +   ++ K ++ +
Sbjct: 121 IVEEDLEGFAAIVIQHEADHLDGTLFIDRIGRLRRSLYDTRVKKWLKRK 169


>gi|302521840|ref|ZP_07274182.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302430735|gb|EFL02551.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 210

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D 
Sbjct: 36  LPITVVGNPVLHKECADVTEFGPELTKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDC 95

Query: 64  QDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           QD    ++  V  NPK+              EGCLS+P   A   R+ +  V   D +  
Sbjct: 96  QDDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGN 155

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 156 AIKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
 gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
          Length = 180

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  +LR+ +R +   +   +  +I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAVLRQKTRLVRPEDMDGLRTIIPRMFAAMYQAPGIGLAAPQVGLGMRFAIVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NP+V INP++I  +D  +  +EGCLS+P+  A+V R   + VRY D   + Q 
Sbjct: 74  SDKDGPRNPIVLINPEVIAETDSMAAREEGCLSLPNQYAEVVRPEAVRVRYQDMEGKVQE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + AD LLATCLQHE+DHL GILF+DHLS LKR+MI ++++K  + +
Sbjct: 134 LEADDLLATCLQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 179


>gi|257063703|ref|YP_003143375.1| peptide deformylase [Slackia heliotrinireducens DSM 20476]
 gi|256791356|gb|ACV22026.1| peptide deformylase [Slackia heliotrinireducens DSM 20476]
          Length = 180

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 86/164 (52%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            P+V +PDP LR V  P +  +  +  L   M   MY+ +G GLAA Q+GV  R++VID 
Sbjct: 6   LPVVTYPDPTLREVCVPCDPSDKSLKKLARQMANTMYANNGCGLAAPQVGVNKRIIVIDC 65

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              +  +NP+  +NP+II       +  EGCLS P    +++R  +  V+Y D N +  I
Sbjct: 66  DQDSGTRNPITLLNPEIIETRGPEELDGEGCLSCPGITVEIRRPTYAIVKYTDLNGEDWI 125

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           I  DGLL  CLQHE+DHLNGI   +      R    K      Q
Sbjct: 126 IEGDGLLGRCLQHEIDHLNGITLFESCDMNARIKALKDYKAAQQ 169


>gi|23010332|ref|ZP_00051057.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 164

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I  I+  + +L+ +++E +      GLAA QIGV  R   
Sbjct: 4   MAMREIRTIPDPVLRTPCDEITTIDDRVRSLVADLVETVDHEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+  SDD+    EGCLS+PD     +R+ +  V   D +  
Sbjct: 64  WNIDDEIG-----YVLNPRIVELSDDYQDGDEGCLSVPDLWYPTRRAWYARVVGTDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++    L+A CLQH+ DHL+G+L++D L R  R    +++ +
Sbjct: 119 EVVVEGTELMARCLQHKCDHLDGMLYLDRLDRSVRKKAMRELRE 162


>gi|258511303|ref|YP_003184737.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478029|gb|ACV58348.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 167

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVV
Sbjct: 1   MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+Q          +I                +E CLS+P     V+R+A++ VR  +  
Sbjct: 61  IDVQPKEDSFQKRAWIELVNPEILERSGVQREREACLSLPGLSGVVERAAYVRVRAQNRY 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            +   I    LLA CLQHE+DHL+GILF D+L   + + 
Sbjct: 121 GEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEEIER 159


>gi|260655752|ref|ZP_05861221.1| peptide deformylase [Jonquetella anthropi E3_33 E1]
 gi|260629368|gb|EEX47562.1| peptide deformylase [Jonquetella anthropi E3_33 E1]
          Length = 162

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++PDP+LR+ + P+   +  +  L+++M  +M+  DG+GLAA QIG+  ++ V+   +
Sbjct: 7   IRVYPDPVLRQPTEPVTVFDEALRRLLEDMAVIMHEADGVGLAAPQIGIAKKIAVVYDAE 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H  +    +    +  S      +EGCLS P     VKR   +TVR  D +   Q   
Sbjct: 67  TDHLYH----LINPEVIASSGGQTGEEGCLSFPGIFGQVKRPLKVTVRCQDGDGNLQEYT 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           A G +A    HE+DHLNG L ID+ S LKR+++ KKM
Sbjct: 123 AQGFIARAFTHEIDHLNGRLLIDNFSPLKRNLVLKKM 159


>gi|295696040|ref|YP_003589278.1| peptide deformylase [Bacillus tusciae DSM 2912]
 gi|295411642|gb|ADG06134.1| peptide deformylase [Bacillus tusciae DSM 2912]
          Length = 155

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR  ++P+ K+  +I  LID+M + MY+ DGIGLAA Q+G+L R++V
Sbjct: 1   MAIRIIRLQGDPILREKAKPVSKVTPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ +          +        +      EGCLSIP  +ADV R+  + VR  D N +
Sbjct: 61  ADIGEGLLGLVNPEVV------LEEGEQTGPEGCLSIPGIQADVTRAHHVIVRAQDRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+GLLA CL HE+DHL+GILF+D ++ 
Sbjct: 115 PLVVDAEGLLARCLLHEIDHLDGILFLDRVTD 146


>gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
 gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
          Length = 200

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P+VI  DP+L   + P+ +  +++  LI +M E M + +G+GLAA QIGV  RL V 
Sbjct: 12  MIRPIVIHGDPVLHTPTEPVTEPVAELKELIADMHETMDAANGVGLAANQIGVNKRLFVY 71

Query: 62  DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              D    +     NP++  +    T   D     EGCLS+P       R+ +  V  +D
Sbjct: 72  HCPDGDTMRRGTVINPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEWAKVTGLD 131

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            N     +   G  A CLQHE+ HL+G +++D L+   +    + + 
Sbjct: 132 ENGDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKREAKRAVK 178


>gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 187

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54
           +  P+ ++  P+LR+V++ I     ++  LI NM E M + DGIGLAA QIG       +
Sbjct: 1   MILPIYVYGQPVLRKVAQDITPDYPELKELIANMFETMDNADGIGLAAPQIGRSIRLSVI 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              ++     ++   +   +  +   +    +    +EGCLSIP    +V R   I V++
Sbjct: 61  DLDVLSEYYPEYKGFRKAFINPHILEVDEESEMLTSEEGCLSIPGIHENVDRRTRIHVKW 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           MD        + +G LA  +QHE DHL+G+LF D +S L++ ++  K++ + + +
Sbjct: 121 MDEEFTEHDEWIEGYLARVMQHEFDHLDGVLFTDRISPLRKQLVKNKLTAMSKGK 175


>gi|89895440|ref|YP_518927.1| hypothetical protein DSY2694 [Desulfitobacterium hafniense Y51]
 gi|123091730|sp|Q24U09|DEF_DESHY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89334888|dbj|BAE84483.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 150

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V     +LR  + P+++I  +I  L+DNML+ +Y  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIYQIVEIGSEVLREKAVPVKEITPNIEKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP II    +    +  CLSIP     V R+A + V  ++   +
Sbjct: 61  IDVGEG-----PIELINPVIIAKEGEDLDDEG-CLSIPGITGQVARAAKVKVEALNRQGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q+I  +GLLA CLQHE+DHL GILF+D   + +R 
Sbjct: 115 LQVIEGEGLLARCLQHEIDHLEGILFVDKAKKTQRR 150


>gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168]
 gi|254767591|sp|B8CWS6|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168]
          Length = 154

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++P+ +I    ++LIDNM+E MY  +G+GLAA Q+GV  R++V
Sbjct: 1   MPVLQIRKIGDPVLRSKAKPVTEITKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +        + +    I  ++   + +EGCLS+P     V R++ +TV+ ++   +
Sbjct: 61  VDTGEGQGL----IELINPEIIETEGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+G LA   QHE+DHLNGILFID + R+  +MI
Sbjct: 117 EVRIRAEGFLARAFQHEIDHLNGILFIDKVVRIGEEMI 154


>gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5]
 gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5]
          Length = 188

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++I PD  LR  +R +   +  D+  L+  M   MY   GIGLAA QIGV  RLVV+DL
Sbjct: 17  EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +K PMV INP+I   S++    +EGCLS+P   A+V R   I+V + D + + + 
Sbjct: 77  APD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 135

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ +
Sbjct: 136 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 181


>gi|78187332|ref|YP_375375.1| formylmethionine deformylase [Chlorobium luteolum DSM 273]
 gi|123730026|sp|Q3B2U9|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273]
          Length = 190

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 98/166 (59%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + D +L + ++P++ +++DI +LID+M E M +  GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINTYSDEVLHQKAKPLKGVDADISSLIDSMFESMENASGIGLAAPQVGCSIRLLVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+    ++   P + +    +      ++ +EGCLS+P  + DV R + IT++Y D N Q
Sbjct: 61  DVSCMKSYEDVPPMVVINPNVLAVRGKNLMEEGCLSVPGVQGDVLRPSEITLKYRDRNFQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  G+LA  LQHE+DHLNG LF+D + +  R  I +++  + 
Sbjct: 121 EHTEEFSGMLARVLQHEIDHLNGTLFVDRMEKRDRRRIQQELDDIA 166


>gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
          Length = 171

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +  P+V F DP+L R +  + + +  ++   +D+M E MY+  G+GLAA QIGV  ++ V
Sbjct: 1   MVYPIVKFGDPVLEREADTVTEFDTPELHKFLDDMFESMYAAKGVGLAAPQIGVSKKIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  + +V INPKI+         +EGCLSIP +R  V+R+  +T+R  +   +
Sbjct: 61  IDVSNGENADDKLVIINPKILKIDGKQEG-EEGCLSIPGFREQVRRARCVTIRAQNAKGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 + LLA    HE DHL G L+I H+S LKRD++ +K+ KL +  D
Sbjct: 120 EFEKTGEDLLARAFLHETDHLYGRLYITHISALKRDLMKRKIKKLQRAGD 169


>gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 167

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   +  +   ++ + +LID+M + M    G+GLAA Q+GVL R+ V
Sbjct: 1   MAVREVRLFGDPVLLSKAETVTDFDATLSHLIDDMFDTMDEQQGVGLAANQVGVLQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP+     D+     EGCLSIP     V R A + V   D +  
Sbjct: 61  YDCNGTRG-----HIVNPEWEAIGDETVHEIEGCLSIPGINGPVTRHARVRVTGQDRHGT 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                AD LLA C+QHE DHL+G+LF+  L   +R    + + + 
Sbjct: 116 PVSFEADDLLARCVQHESDHLDGVLFLKRLEGDERKTAMRSLREQ 160


>gi|172040657|ref|YP_001800371.1| peptide deformylase [Corynebacterium urealyticum DSM 7109]
 gi|171851961|emb|CAQ04937.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
          Length = 166

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    L  F DP+LR  +  +E     ++ +  L+ +MLE M    G+GLAA Q+GV  R
Sbjct: 1   MAVLSLRYFGDPVLRTPAAEVEADFSSDAALATLVADMLETMDHHGGVGLAANQVGVTKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + V D +           INP   +  ++     EGCLSIP  R +V+R+  + +R    
Sbjct: 61  VFVYDCESDRG-----HVINPTWESVGEETQTGPEGCLSIPGIRGEVQRAETVRLRGQTL 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   +   GLLA C+QHE DHL+G+LF+ HLS   R      + +
Sbjct: 116 DGELVDMEVSGLLARCVQHETDHLDGVLFLKHLSPEDRKQAMADIRR 162


>gi|91225452|ref|ZP_01260574.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|91189815|gb|EAS76088.1| peptide deformylase [Vibrio alginolyticus 12G01]
          Length = 168

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +   LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESGEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166


>gi|126463293|ref|YP_001044407.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104957|gb|ABN77635.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 163

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAILPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++     +EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGREGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q     G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEALLTGIDAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|297559276|ref|YP_003678250.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296843724|gb|ADH65744.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 184

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V F DP+L   + P+ + +     L+D++LE + +    GLAA QIGV  R+  
Sbjct: 1   MTMRPIVRFGDPVLVTPTTPVTRFDKHTRALVDDLLETVEAPGRAGLAANQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          INP+I   S++     EGCLS+P       R+ +  V  +D   +
Sbjct: 61  Y-----NVEGRIGYVINPRIAELSEEVQEGDEGCLSVPRLWYPATRAEYAVVTGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   GL+A CLQHE DHL+G+++I+ L    R    + + +
Sbjct: 116 PVTVEGTGLMARCLQHETDHLDGMVYIERLDPQTRKRALRDIRR 159


>gi|257469368|ref|ZP_05633462.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|317063614|ref|ZP_07928099.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|313689290|gb|EFS26125.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
          Length = 173

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR  +  +E ++ +I  ++ +M E MY   G+GLAA QIG+  R++V+
Sbjct: 1   MIYEIKKYGDPVLREKTVEVETVDDNIREILQDMAETMYDKKGVGLAAPQIGISKRMLVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D             +NP I   +++   ++EGCLSIP     V+R A I V Y++   + 
Sbjct: 61  DWSGEGEALRK--VVNPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIRVDYLNEKGEK 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL  +LF+D +S + + M+TKK+  L + 
Sbjct: 119 VTEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165


>gi|25028276|ref|NP_738330.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259507334|ref|ZP_05750234.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931152|sp|Q8FT51|DEF1_COREF RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259165045|gb|EEW49599.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 169

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + IF DP+L   +  +   +  +  LID+M + M    G+GLAA Q+GV  R V 
Sbjct: 1   MTVRDVRIFGDPVLTSRADEVVDFDESLATLIDDMFDTMEDAGGVGLAANQVGV-LRRVF 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         +NP      ++    +EGCLSIPD  A+  R   + +   D +  
Sbjct: 60  VFDCSHVDGGLRGHVVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              + A GLL+ C+QHE DHL+G+LF+  L   +R    
Sbjct: 120 PIGLVASGLLSRCIQHETDHLDGVLFLKRLDPAERKAAM 158


>gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium]
          Length = 176

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LRR +R +     ++  LID+M+E M S  G+GLAA Q+   ++++ 
Sbjct: 1   MSIREIVFTPDPVLRRKARKVTDFGPELQTLIDDMVETMRSAPGVGLAAPQVAESWQVIT 60

Query: 61  IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           I+  + +                 +NP+I   S++  V  EGCLS+P    +V+R+  +T
Sbjct: 61  IEYSEESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERNEAVT 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           V+  +   Q   I A   LA   QHE+DHL G+LF D    L R
Sbjct: 121 VKAQNRRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTDELWR 164


>gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231]
 gi|302331492|gb|ADL21686.1| N-formylmethionyl-tRNA deformylase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium
           pseudotuberculosis I19]
          Length = 197

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   +  + +   + ++  LI +M E M    G+GLAA QIGV  RL
Sbjct: 1   MTVRPIVIHGDPVLHNPTAEVTEPIDSPELQELIADMYETMAVAHGVGLAANQIGVGKRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITV 112
            V +  D     +    INP + T     ++        EGCLS+P       R+ +  V
Sbjct: 61  FVFNCPDDQGHMHRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRATWAKV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +D +         G LA C QHE+ HL+G L+ D L    +    K + +
Sbjct: 121 TGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKR 172


>gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 169

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + IF DP+L   +  I   +  + +L+++M + M +  G+GLAA QIGVL R+ V
Sbjct: 1   MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP+     ++  +  EGCLSIP+  AD +R   + V   D +  
Sbjct: 61  FDCTTE-EDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I A GL+A C+QHE DHL+G+LF+  L+  +R    
Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAM 158


>gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H]
 gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain
           H]
          Length = 242

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V++PDP+LR+    +   + ++  L+ +M  VMY + G+GLAA Q+ +  R++V + 
Sbjct: 66  LKIVLYPDPVLRKKCNEVVNFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISMRIIVWNA 125

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +   ++N  VFINP I+  S   S   EGCLS PD    V R   +++ Y D +    
Sbjct: 126 LYEKKKKENERVFINPSIVEPSLIRSKLVEGCLSFPDIEGKVDRPRVVSISYYDLDGNKH 185

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +    G+ A   QHE DHL+GILFID  S+ ++  +  K++++++
Sbjct: 186 LKILKGIHARIFQHEYDHLDGILFIDRFSQSEKHKVRAKLNEMIR 230


>gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola sp. JR]
 gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR]
          Length = 150

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DPIL+   RP+ KI  +I+ L+D+M + MY  +G+GLAA QIGV  R++V
Sbjct: 1   MAVYKIVEIGDPILKEKCRPVNKITPNIIKLLDDMADTMYDANGVGLAAPQIGVGKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          ++ +            EGCLSIP  +  V R A + VR M+    
Sbjct: 61  VDVGDGLIELVNPEIVHREGSETDV------EGCLSIPGIQGQVPRYAKVRVRGMNREGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GLLA   QHE+DHL GILFID    + + 
Sbjct: 115 RVEYEAEGLLARAFQHEIDHLEGILFIDRAKEIIKK 150


>gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 185

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+    DP+LR  +  +   ++ +  L+DNM+E MY+  G+GLAA Q+GV  ++ V    
Sbjct: 2   PIRTLGDPVLRTPAEAVTVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFDTE 61

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       + +   ++          EGCLS+P +     R+A  TVR +D     
Sbjct: 62  YDPRDVAVPRRPLVVVNPVLETGPGEQHDDEGCLSVPGHAYPTTRAATATVRGVDATGAA 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
               ADGLLA C QHE DHL+G L+ID L+   R   
Sbjct: 122 VRYEADGLLARCFQHETDHLHGRLYIDRLTGEDRRAA 158


>gi|296117966|ref|ZP_06836549.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969197|gb|EFG82439.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 169

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + ++ DP+L   +  I + +  +  L ++MLE M    G+GLAA QIG+L R+  
Sbjct: 1   MTVKAIRLYGDPVLTTRAGEITEFDESLEKLAEDMLETMDDAGGVGLAANQIGLLKRIF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +              INP      D   V  EGCLSIPD     +R   ++V   D +  
Sbjct: 60  VYDCSSVETGMRGAIINPVWEAVGDKTQVGNEGCLSIPDISMPTERFETVSVSGQDVHGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   GL+A C+QHE DHL+G+LF+  L    R     ++  
Sbjct: 120 PVSMVVSGLMARCVQHETDHLDGVLFLQRLETDDRKQAMAQIRN 163


>gi|167630201|ref|YP_001680700.1| peptide deformylase [Heliobacterium modesticaldum Ice1]
 gi|238687984|sp|B0TGS8|DEF_HELMI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167592941|gb|ABZ84689.1| peptide deformylase [Heliobacterium modesticaldum Ice1]
          Length = 151

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++   DP+LR  ++P+ + NS++  LID+M + M +  G+GLAA QIG+  R+ V
Sbjct: 1   MAVYEILKMGDPVLREKAKPVTRFNSNLGRLIDDMFDTMAAARGVGLAAPQIGIGKRVCV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++            I  +            EGCLSIPDY   VKR   + V+  D   +
Sbjct: 61  VEVGKRRFELVNPEIIEAEGE------QCDAEGCLSIPDYTGRVKRFQRVRVKAQDRKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I     LLA   QHE+DHL+GILF+D + 
Sbjct: 115 TFIAEGTDLLAVAFQHEIDHLDGILFVDRVE 145


>gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 179

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +RP+   ++  + + +  M   MY   GIGLAA Q+G+  R   I  
Sbjct: 14  PILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLR-FAIVD 72

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 + P++ INP +I  SD  +  +EGCLS+P+  A+V R   + VRY   +   + 
Sbjct: 73  LGEEGERQPLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEE 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ADGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K  + +
Sbjct: 133 LEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 178


>gi|126700204|ref|YP_001089101.1| peptide deformylase 2 [Clostridium difficile 630]
 gi|254976176|ref|ZP_05272648.1| peptide deformylase 2 [Clostridium difficile QCD-66c26]
 gi|255093565|ref|ZP_05323043.1| peptide deformylase 2 [Clostridium difficile CIP 107932]
 gi|255307617|ref|ZP_05351788.1| peptide deformylase 2 [Clostridium difficile ATCC 43255]
 gi|255315309|ref|ZP_05356892.1| peptide deformylase 2 [Clostridium difficile QCD-76w55]
 gi|255517977|ref|ZP_05385653.1| peptide deformylase 2 [Clostridium difficile QCD-97b34]
 gi|255651093|ref|ZP_05397995.1| peptide deformylase 2 [Clostridium difficile QCD-37x79]
 gi|260684158|ref|YP_003215443.1| peptide deformylase 2 [Clostridium difficile CD196]
 gi|260687817|ref|YP_003218951.1| peptide deformylase 2 [Clostridium difficile R20291]
 gi|115251641|emb|CAJ69474.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2 )
           [Clostridium difficile]
 gi|260210321|emb|CBA64646.1| peptide deformylase 2 [Clostridium difficile CD196]
 gi|260213834|emb|CBE05821.1| peptide deformylase 2 [Clostridium difficile R20291]
          Length = 146

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I            + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGEELIELINPEIIETSGE------QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146


>gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
 gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
          Length = 196

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++V+  I   + ++ +LI+NM E MY   G+GLAA QIG+  RL VI
Sbjct: 1   MILPIVAYGDPVLKKVANAIAADHPNLESLIENMWETMYHAHGVGLAAPQIGLPIRLFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                A +    VFIN  I   + +   + EGCLSIPD R DV R   
Sbjct: 61  DATPFADDEDLTQSEQDALKNFKAVFINATITEETGEEWTFNEGCLSIPDVREDVIRKPK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D   +      DGL+A  +QHE DH+ GILF D LS LK+ ++  ++S + + +
Sbjct: 121 ITITYQDETFKTHTKTFDGLVARVIQHEYDHIEGILFTDKLSSLKKRILKGRLSNISKGK 180


>gi|255325044|ref|ZP_05366150.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|255297609|gb|EET76920.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
          Length = 170

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I+ DP+L   +  I K ++ +  L  +MLE M +  G+GLAA Q+G+L R+  
Sbjct: 1   MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDNAGGVGLAANQVGILKRIF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         +NP      +      EGCLSIP   A+  R   + V   D   +
Sbjct: 60  VYDCSHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163


>gi|86137256|ref|ZP_01055834.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826580|gb|EAQ46777.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 165

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M+E M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARTCLPWPDKRLRTAATEVSEITDEIRAIWTDMIETMEAMPGVGLGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      +       NP+++  S     ++E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VDGSRERGKAV--RMANPEVLHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG LF DHLS++KRDM+ KK  KL
Sbjct: 119 ITERDFVGIEATSVQHQIDHLNGKLFFDHLSKVKRDMLIKKSKKL 163


>gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319]
 gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319]
          Length = 186

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 1   MVLPVYTYGQPVLRKVAEDIPLDYPDLQQLIQNMFETNTASDGVGLAAPQIGKSIRVVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       +     +    +EGCLS+P     V R+  I V+Y+
Sbjct: 61  DLDVLSDTFPEYKGFRHAFINGHILEFDDSETETLEEGCLSLPGIHESVTRAKRIYVKYV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + +G LA  +QHE DHL+G +F DHLS  ++ MI  K+  L+Q +
Sbjct: 121 DENLVEHEEWIEGYLARVIQHEFDHLDGKVFTDHLSPFRKQMINSKLKALLQGK 174


>gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057]
 gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057]
          Length = 186

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M + +G+GLAA QIG+  R+V +
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +          ++     +IN  I+  + +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  NLDVLSEDLPEYKGFRKAYINAHILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +      +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ L++ +
Sbjct: 121 ENLEEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNALLKGK 173


>gi|15965155|ref|NP_385508.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307309167|ref|ZP_07588838.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|23396568|sp|Q92QD0|DEFL_RHIME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15074335|emb|CAC45981.1| Putative polypeptide deformylase [Sinorhizobium meliloti 1021]
 gi|306900313|gb|EFN30929.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 172

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP P+L   +  I + +  +  L D++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++     +  P  F+NP+I+  S + + + EG +S+P    +V+R   + V +   + +
Sbjct: 61  IEVDP---QTGPRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   A+GL+A CLQHE+D LNGI +I  LSRLKR+   K+  K  +
Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNR 164


>gi|261252741|ref|ZP_05945314.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260936132|gb|EEX92121.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 167

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ + S +  LID+MLE +Y + +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLKVKAEKVQDL-STVQTLIDDMLETLYATDNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +   R  P++ +NP++++ SD     +  CLS+PDY ADV+R   + V  +D   
Sbjct: 60  IIDLSE--SRDEPLILVNPEVVSGSDKALGQEG-CLSVPDYYADVERFTSVVVSALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   I +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K V+
Sbjct: 117 KPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKRKMAMKKVKKYVK 164


>gi|311898295|dbj|BAJ30703.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 218

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  R +   + ++  LID+M + MY+ +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHREVRTVTAFDGELSALIDDMFQSMYAAEGVGLAANQIGVDLKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +             QEGCLS+P    ++ R  +  V   D +
Sbjct: 102 DCPDDEGVRHVGHVVNPVLEELPAGRRALDDSQEGCLSVPTAYQELARPDYAAVTGQDKD 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                +   G  A CLQHE DHL G L+ID LS+  R    ++M
Sbjct: 162 GNPIRVEGTGFFARCLQHETDHLYGYLYIDRLSKRDRKDALRQM 205


>gi|255101749|ref|ZP_05330726.1| peptide deformylase 2 [Clostridium difficile QCD-63q42]
          Length = 146

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I            + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGEDLIELINPEIIETSGE------QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146


>gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
 gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
          Length = 164

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 103/163 (63%), Gaps = 3/163 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
              +     +    +      +  +EGCLSIP+ RA V R+  + +R +D   +   + A
Sbjct: 62  RDGRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 119 DDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 161


>gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|23396549|sp|Q93LE9|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59797588|sp|Q72S74|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans]
 gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   DPILR++S P+ +      +   LI +M + M   +G+GLAA QIG+L +
Sbjct: 1   MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60

Query: 58  LVVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV+  +D+            + +NP I   + D S + EGCLS+P  R  V+R   I +
Sbjct: 61  IVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           ++MD          DG  A   QHE DHL GIL++D L   K
Sbjct: 121 QWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 162


>gi|163744870|ref|ZP_02152230.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45]
 gi|161381688|gb|EDQ06097.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45]
          Length = 165

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  V++PD  LR  + PIE +  +I  L D+M+E M +  G+GLAA QIGV+ ++ V
Sbjct: 1   MTLRRYVLWPDKRLRSPAEPIEAVTDEIRTLWDDMIETMDAMPGVGLAAPQIGVMLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +++  +   NP II  S     Y+E   ++P + A ++R   + VR++D    
Sbjct: 61  VDASEARNKR--IRLANPVIIDASAVLHPYEEASPNLPGFSAVIRRPRGVKVRFLDETGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL A  +QH++DHL G ++ D+LS+ KRDM+ +K  KL
Sbjct: 119 EVERDFVGLEAVSVQHQIDHLAGKMYFDNLSKTKRDMLLRKARKL 163


>gi|302206252|gb|ADL10594.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis C231]
 gi|302330810|gb|ADL21004.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276494|gb|ADO26393.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis I19]
          Length = 169

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+L   +  +   + ++ NL+ +MLE M +  G+GLAA Q+GV  R+  
Sbjct: 1   MTIRDIRFFGDPVLTTRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP      +D  +  EGCLSIPD + D  R   + V   D   +
Sbjct: 60  VYDCSHIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              + A GL++ C+QHE DHL+G+LF+  L +  R    
Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAM 158


>gi|253583796|ref|ZP_04860994.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725]
 gi|251834368|gb|EES62931.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725]
          Length = 173

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR  +  +E ++ +I  ++ NM+E MY   G+GLAA Q+G+  R++V+
Sbjct: 1   MIYEIKKYGDPVLREKTVEVETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D             INP I   +++   ++EGCLSIP     V+R A I V Y++   + 
Sbjct: 61  DWTGEGEELRK--VINPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIKVDYLNEKGEK 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL  +LF+D +S + + M+TKK+  L + 
Sbjct: 119 ITEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165


>gi|291456898|ref|ZP_06596288.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291382175|gb|EFE89693.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 161

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                I+          EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKVGYVL------NPILEEKSGEQYGDEGCLSVPGLWYKTRRAEYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    K M +  +
Sbjct: 115 EVVLEGTGIMGRMLQHECDHLDGHVYLDRLEKEERRAAMKYMREHQK 161


>gi|255008473|ref|ZP_05280599.1| peptide deformylase [Bacteroides fragilis 3_1_12]
 gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
 gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
          Length = 184

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+VVI
Sbjct: 1   MILPIYVYGQPVLRQVAEDITPDYPNLKELIENMFETMDHADGVGLAAPQIGLPVRVVVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +          ++     +IN  I     D    +EGCLS+P     VKR + I VRYMD
Sbjct: 61  NLDVLSEDYPEYKDFRKAYINAHIDVVEGDEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
 gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
          Length = 169

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + IF DP+L   +  I   +  + +L+++ML+ M +  G+GLAA QIGVL R+ V
Sbjct: 1   MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP+     ++  +  EGCLSIP+  AD +R   + V   D +  
Sbjct: 61  FDCTTE-EDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I A GL+A C+QHE DHL+G+LF+  L+  +R    
Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAM 158


>gi|322378951|ref|ZP_08053365.1| peptide deformylase [Helicobacter suis HS1]
 gi|322379805|ref|ZP_08054102.1| peptide deformylase [Helicobacter suis HS5]
 gi|321147773|gb|EFX42376.1| peptide deformylase [Helicobacter suis HS5]
 gi|321148627|gb|EFX43113.1| peptide deformylase [Helicobacter suis HS1]
          Length = 172

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV +PD  LR +S  +E  ++ +  L+++M E M +  GIGLAA+Q+GV  R+++
Sbjct: 2   MAILDLVHYPDKRLRGLSTEVEVFDTALHTLLEDMQETMLANKGIGLAAIQVGVAKRILI 61

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L     ++ P   +     T        +++EGCLS+P++  +++R A + + Y D  
Sbjct: 62  INLPRQDEQQYPEDCLEIINPTLLHAEGQILWREGCLSVPEFYEEIQRFARVKLAYCDRY 121

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              Q + A  LL+  +QHE+DHLNGILF+D LS LKR    K+  K  +
Sbjct: 122 GDPQELQASDLLSVAIQHEIDHLNGILFVDRLSMLKRKKFEKEFRKNSK 170


>gi|146276207|ref|YP_001166366.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554448|gb|ABP69061.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 167

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+  + P++ +  +I  + D+M+E M +  G GLA  QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTAAAPVDAVTDEIHAIWDDMVETMDAMPGYGLAGPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   +       NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSDSRGKAI--RLANPEILHASGQFREHEEGSPNLPGATAVISRPRAVTVRFLNTAGEM 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHLNG L+IDHLS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLNGKLYIDHLSALKRKMVIAKSEKYLR 164


>gi|229522817|ref|ZP_04412231.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229340034|gb|EEO05042.1| peptide deformylase [Vibrio cholerae TM 11079-80]
          Length = 168

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+    + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLCATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|258593266|emb|CBE69605.1| Peptide deformylase (PDF) (Polypeptide deformylase) [NC10 bacterium
           'Dutch sediment']
          Length = 169

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++P P++R+ S  +  IN ++   ID+M+E MY+  G+GLAA Q+G L R++V
Sbjct: 1   MAKLSILLYPSPVIRKKSVSVTSINGELQRFIDDMVETMYAAPGMGLAAPQVGALKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      PM  INP ++   +   V +EGCL IPD    V R   + V+  D N +
Sbjct: 61  LDPSDDRTSHRPMALINPVLVA-GEGQIVDEEGCLCIPDLNEPVSRFKQVVVKAYDRNEK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+    LLA  LQHE+DHL+GILFID LS
Sbjct: 120 EIILEGADLLARILQHEIDHLDGILFIDRLS 150


>gi|227547872|ref|ZP_03977921.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080057|gb|EEI18020.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 190

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ +E+  +++  LI +M E M +  G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIHGDPVLHEPTKAVEQPVAELQELIADMHETMDAAYGVGLAANQVGVPLRLFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               D    +     NP++  +    T   D     EGCLS+P       R+++  V  +
Sbjct: 61  YHCPDGDRMRRGTVINPVLETSEVPKTMPSDDGDDDEGCLSVPGESWPTGRASWAKVTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D N    ++  +G  A CLQHE+ HL+G+++ D L+   +    +
Sbjct: 121 DENGDEVVVEGEGFFARCLQHEVGHLDGVVYTDVLTGRYKREAKR 165


>gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
 gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
          Length = 164

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   +P+LR  S  I+K + ++   +  +  +MY  DG+GLAA Q+ VL R+ V D   
Sbjct: 3   IVYIGNPVLREKSEAIKKFDDNLKTFVKELTSIMYKEDGVGLAAPQVAVLKRMFVFD--- 59

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P V INP+I+  S +  + +EGCLSIP   ADV+R  ++ +RY D +       
Sbjct: 60  --DGSGPKVIINPEILEKSKELVIMEEGCLSIPGVYADVERPEWVKMRYQDVDGNVHEEL 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +G     +QHE DHLNGILFID+LS  K+ MI  K+ ++++ +
Sbjct: 118 FEGYAGRIVQHEYDHLNGILFIDYLSPAKKMMIRPKLREIMKGK 161


>gi|23335172|ref|ZP_00120410.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
 gi|23466058|ref|NP_696661.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189439265|ref|YP_001954346.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|213691939|ref|YP_002322525.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|227547307|ref|ZP_03977356.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621368|ref|ZP_04664399.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296454248|ref|YP_003661391.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|317482866|ref|ZP_07941874.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689310|ref|YP_004209044.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691322|ref|YP_004220892.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|39931156|sp|Q8G487|DEF2_BIFLO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23326783|gb|AAN25297.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189427700|gb|ACD97848.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|213523400|gb|ACJ52147.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|227212266|gb|EEI80162.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515829|gb|EEQ55696.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296183679|gb|ADH00561.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|316915711|gb|EFV37125.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456178|dbj|BAJ66800.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320458046|dbj|BAJ68667.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320460646|dbj|BAJ71266.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 162

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                ++          EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKVGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++   GL+   LQHE DHL+G +++D L + +R    + M    
Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRNRQ 160


>gi|319788404|ref|YP_004147879.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466916|gb|ADV28648.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 1/171 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++   DP+LR+ S  IE I+  + +L+ +MLE M   DG GLAAVQIG L R++V
Sbjct: 1   MAIRPILPITDPLLRQKSAEIETIDDSVRDLVSDMLETMQDADGAGLAAVQIGELRRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-CLSIPDYRADVKRSAFITVRYMDCNA 119
            D+       +  VFINP+II  SD+    +   CLS+P+    V R+  + VR+ D +A
Sbjct: 61  ADIPLDEPHASHKVFINPEIIWQSDEIQELEGEGCLSMPEIYFTVPRALEVKVRFTDLDA 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               ++A+G  A C QHE+DHLNGI  IDH+S LKRD    K  K +++ +
Sbjct: 121 VTHEVHAEGFSAVCFQHEIDHLNGIRQIDHVSSLKRDKFLAKFRKYLRIDE 171


>gi|308235005|ref|ZP_07665742.1| peptide deformylase [Gardnerella vaginalis ATCC 14018]
 gi|311114690|ref|YP_003985911.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
 gi|310946184|gb|ADP38888.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
          Length = 162

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR    PI +I   + NL++++LE +      GL+A QIG+  R   
Sbjct: 1   MTIRQIRIVPDPVLRTPCDPIREITPAVRNLVEDLLETVNDPGRAGLSANQIGISLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++ H             +I          EGCLS+P      +R+ +   + +D + +
Sbjct: 61  YNIEGHIGYIL------NPVIEELSGEQYGDEGCLSVPRLWYKTRRADYARAKGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL+A  +QHE DHL+G +++D L +  R    +++  
Sbjct: 115 TIVLEGKGLMARMIQHECDHLDGHVYLDRLEKDVRKQALRQLRN 158


>gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO]
 gi|167012066|sp|A8F524|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO]
          Length = 171

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K + +  DP+LR+ S+ +E+++   ++LI ++ E MY+TDGIGLAA QIGV  R+ V+
Sbjct: 1   MVKKIRLLGDPVLRKKSKNVERVDETTISLIKDLFETMYATDGIGLAAPQIGVSLRIFVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P VFINP+II  S++  + +EGCLS+P+   DV+RS  +TVRYM+ + + 
Sbjct: 61  DDGK------PRVFINPEIIYKSEEKEIAEEGCLSVPEVFEDVERSKEVTVRYMNEHGEE 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                    A  +QHE DHL G+LFID +   +R  I KK+ ++V+ 
Sbjct: 115 VEESFVDYSARVVQHEYDHLQGVLFIDLIPSSRRFAIRKKLIEIVRQ 161


>gi|256832744|ref|YP_003161471.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256686275|gb|ACV09168.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 162

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAMREIRVVPDPVLRTKCDEITHIDDRVKGLVEDLLETVDMEGRAGLAANQIGVNLRAFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    + +    EGCLS+P      +R  +  V  +D + +
Sbjct: 61  YNIDDDLG----YVINPRIVELSEESYQDGDEGCLSVPGLWYPTRRHMYARVEGIDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    L+  CLQHE+DHL+G+L++D L R  R    +++ 
Sbjct: 117 PLTVEGTDLMGRCLQHEVDHLDGLLYLDRLERSVRRRAMQELR 159


>gi|283783275|ref|YP_003374029.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|297243498|ref|ZP_06927430.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|283441016|gb|ADB13482.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|296888543|gb|EFH27283.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
          Length = 162

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR     I +I   + +L+D++LE +      GL+A QIGV +R   
Sbjct: 1   MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                +I          EGCLS+P      +R+ +   R +D + +
Sbjct: 61  YNINGRIGYIL------NPVIEELKGEQYDDEGCLSVPGLWYKTRRANYARARGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++  +GL+A  +QHE DHL+G +++D L +  R    +++   ++
Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMR 161


>gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86]
 gi|158513727|sp|A6H0E7|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86]
          Length = 194

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V   I K   ++   I NM E MY+  G+GLAA Q+G+  RL ++
Sbjct: 1   MILPIVGYGDPVLRKVCEEITKDYINLEETIANMYETMYNACGVGLAAPQVGLPIRLFIV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +                   FIN K++    +   + EGCLSIPD R DV R+  
Sbjct: 61  DADPFSDSDDISKEEAAALKGFKKTFINAKMLKEEGEEWSFSEGCLSIPDVREDVYRNPN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D N   +    +GL+A  +QHE DH+ G+LF D ++  K+  I KK+  +++ +
Sbjct: 121 ITIEYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTDKITVFKKQFIKKKLQNIMEGK 180


>gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 165

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P+PILR  ++ +   N D+  LI++M E MY+ DG+GLAA Q+G+   + V
Sbjct: 1   MAILEVIKYPNPILRSKNKIVTAFNDDLKKLIEDMYETMYANDGLGLAAPQVGINLMVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +           +NP I+    + +  +  CLS P+   D++R   + +   D N +
Sbjct: 61  VDYEGK-----KYTLVNPAILEKRGEQTGREG-CLSFPEVFEDIERPEIVKIEAFDENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I A GLLA    HE+DHL+G L ID +S +KR+MI 
Sbjct: 115 KYAIEASGLLARAFCHEIDHLHGRLIIDMVSPVKRNMIQ 153


>gi|149370599|ref|ZP_01890288.1| peptide deformylase [unidentified eubacterium SCB49]
 gi|149356150|gb|EDM44707.1| peptide deformylase [unidentified eubacterium SCB49]
          Length = 196

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L+++++ I+K   ++  L+ NM E MY+  G+GLAA QIG+  R+ ++
Sbjct: 1   MILPIVAYGAPVLKKLAKDIDKDYPELDELLANMYETMYNASGVGLAAPQIGLPIRIFIV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        FIN KII  + D   + EGCLSIPD R DV R   
Sbjct: 61  DASPFSDDDELDPAEQEFLSTFKQTFINAKIIEETGDEWAFNEGCLSIPDVREDVFRKPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D + +       GL A  +QHE DH+ GILF D LS+LK+ +I +++  + + +
Sbjct: 121 IVIEYYDEDFKKHTEKFTGLAARVIQHEYDHIEGILFTDKLSQLKKRLIKRRLEDISKGK 180


>gi|78778228|ref|YP_394543.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251]
 gi|78498768|gb|ABB45308.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251]
          Length = 178

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +V +PD  L+  S+ +EK + ++  L++ M   M  ++GIGLAA+Q+G   +++++
Sbjct: 1   MKLTIVEYPDKRLKEKSKIVEKFDEELHKLLEAMYASMIESNGIGLAAIQVGYAKQVLLL 60

Query: 62  DLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ D    ++    I      IT S+  ++YQEGCLS+P +  DV R   + V Y D   
Sbjct: 61  NIPDDNDEQSRDSLIEMINPIITQSEGETIYQEGCLSVPSFYEDVSRFERVCVNYQDREG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + I A GLL+  +QHE+DHL+G+LFID LS  +R    K+  K+ + +
Sbjct: 121 NTKTIEATGLLSVAIQHEIDHLHGVLFIDKLSYSRRKKFEKEYKKVQKEK 170


>gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038699|gb|ABF65311.1| Peptide deformylase [Ruegeria sp. TM1040]
          Length = 169

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDP L     P+     D+  LID++LE MY+  G GLAA Q+GVL R+ V
Sbjct: 1   MSLLPIVQWPDPRLSTACAPV-GAAEDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +NP+V I P+++  SDD ++ +E CLSIP     + R   I +R+ D +  
Sbjct: 60  MDVDWKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            Q    DG  A C+QHE DHL+G +  DH S  +R ++  + 
Sbjct: 120 AQEQTFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQY 161


>gi|294786951|ref|ZP_06752205.1| peptide deformylase [Parascardovia denticolens F0305]
 gi|294485784|gb|EFG33418.1| peptide deformylase [Parascardovia denticolens F0305]
          Length = 163

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR V  PI  I   + NL+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MTIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                 I          EGCLS+P      +R+ +  V  +D + +
Sbjct: 61  YNIDGKVGYVL------NPKIVARSGEQYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    + M +  +
Sbjct: 115 KIVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 161


>gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152]
 gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152]
          Length = 196

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR++   I+K   ++  LI NM E MY+  G+GLAA QIG   RL VI
Sbjct: 1   MILPIVAYGDPVLRKMGVEIDKDYPNLKELIANMKETMYNASGVGLAAPQIGKAIRLFVI 60

Query: 62  DLQDHAHRKNPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A   +               +INPKII    +   + EGCLSIPD R DV R + 
Sbjct: 61  DASPFAEDDDLDDEERATLKDFNRVYINPKIIDEEGEEWTFNEGCLSIPDVREDVTRKSK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y D +        DGL A   QHE DH+ G+LF D +S LK+ +I +K+  + + +
Sbjct: 121 VTLEYQDEDFNTHTEVLDGLAARVFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISKGK 180


>gi|322384330|ref|ZP_08058028.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150832|gb|EFX44269.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 160

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+ PDP+LR  ++P+ K NS +  L+D+M + MY  +G+GLAA Q+G+L R +V
Sbjct: 1   MAIRIIVMDPDPVLREKAKPVTKFNSSLHKLLDDMADTMYENEGVGLAAPQVGILKRAIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +       I  +    +  EGCLSIPD + DV+R   +TV+  D N  
Sbjct: 61  MDVGDEHGLIELV----NPEIVATSGEQIGPEGCLSIPDLQGDVRRPMNVTVKGQDRNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             I+    LLA C+ HE+DHLNGILF D   +L R+ + +
Sbjct: 117 EVIVEGTELLARCIMHEVDHLNGILFTDLALKLYRNELEE 156


>gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301]
          Length = 181

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ D +LRR   PI     D+  L ++M   +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVIYGDEVLRRKCEPIAPDYPDVKKLAEDMFLTLEEAEGVGLAAPQIGKDIRLFIV 60

Query: 62  DLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D         +       F+NP+I  FS++   Y EGCLS P   ADV RS  I +RYMD
Sbjct: 61  DCTPWAEEDPSCADYKRAFVNPEIYEFSEEKKTYNEGCLSFPGIHADVARSLSIRMRYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +         GL A  +QHE DH+ G++F D ++ L+R ++  K+  L + +
Sbjct: 121 TDFVEHDEEFTGLKAWVIQHEYDHIEGVVFTDRIAPLRRQLLKSKLLNLAKGK 173


>gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
 gi|238688341|sp|B1I504|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
          Length = 154

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PDPILR  +R + KI   I  L  N+++ M  + G+GLAA QIGV  R++V
Sbjct: 1   MAVFQIVQYPDPILREKAREVRKITPQIERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        KNP+V INP+I+    D    +EGCLS+P     V+R   +TVR  +   +
Sbjct: 61  V----EDPEKNPIVLINPEIVRLEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                 +G  A   QHE+DHL+GI+F+D  + + +  
Sbjct: 117 QVAYLVEGFTARAFQHEIDHLDGIVFLDRATTIYKRK 153


>gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3]
 gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3]
          Length = 177

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E  +  ++  L+ +M E M+  +G GLAA QIGV  +L++
Sbjct: 1   MIREILRMGDPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +     D     EGCLS+P  R  V R + +     
Sbjct: 61  FGFGNNARYPDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKRIDRIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|227821802|ref|YP_002825772.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227340801|gb|ACP25019.1| peptide deformylase-like protein [Sinorhizobium fredii NGR234]
          Length = 163

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP+P L   +  + + +S + +L+D++ + M +  GIG+ A  IGVL R+ V
Sbjct: 1   MALRPIIRFPNPALGMSAEMVTRFDSSLRSLVDDLTDTMRAAPGIGITAPHIGVLQRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   +   +  P  F+NP++I  S++   + EG +S+P    +V+R   I VRY   + +
Sbjct: 61  I---ELERQAGPRTFVNPQMIWCSEETERHSEGSVSMPGISEEVERPTSIRVRYQTISGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                A GL+A CLQHE+D L+GI +I  LSRLKR+   K+  KL 
Sbjct: 118 TLEEEASGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAVKRFEKLS 163


>gi|157737933|ref|YP_001490617.1| peptide deformylase [Arcobacter butzleri RM4018]
 gi|157699787|gb|ABV67947.1| polypeptide deformylase [Arcobacter butzleri RM4018]
          Length = 171

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 104/171 (60%), Gaps = 2/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ +EK ++++  L+D+M E M + +G+GLAA+Q+ V   ++VI
Sbjct: 1   MVREVITYPNKLLRLKSKDVEKFDNELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    I     +IT  D   V+ EGCLS+P +  DV R+  I V Y +   
Sbjct: 61  NLPNEEDIQDKNDLIEAINPVITHKDGTQVFTEGCLSVPGFSEDVTRAEHIIVEYFNRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           + Q + ++G LA   QHE++HL+G LFI++LS +KR    K+  K ++ ++
Sbjct: 121 EKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDKN 171


>gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563]
 gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563]
          Length = 189

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+ D  L++VS  IEKI+ +I+ LID+M E MY   G+GLAAVQIG+L RL+VI
Sbjct: 1   MLRELVIYGDERLQQVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGILKRLIVI 60

Query: 62  DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D      P      INP+II   ++  + +EGCLS P+ R DV R   I V+Y+D  
Sbjct: 61  SVPDFDDETKPDFKLALINPEIIWHGEEKEILEEGCLSFPEIRDDVARYKEIKVKYLDKE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              QI+ A+G +A  LQHE+DH NGI FID L   ++  + +++  L   
Sbjct: 121 GNEQILEAEGYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKDLRNN 170


>gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
 gi|238692654|sp|B3QPU5|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
          Length = 187

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+L   ++P++ ++S I  LI +M + MY   GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINTYSDPVLTAKAKPLKGVDSSIRELIADMFDSMYKAPGIGLAAPQVGHSLRLLVV 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+     +     + +    I      +  +EGCLS+P    DV R + IT+ Y D   +
Sbjct: 61  DISTIKEYADYKPMVVINPRIVSVAGRNAMEEGCLSVPGVAGDVVRPSKITLHYRDEKFE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                   ++A  LQHE+DHL+G LF+D + +  R  + K +  + Q R
Sbjct: 121 EHTEEFSDMMARVLQHEIDHLDGTLFVDRMEKRDRRKVQKTLDAIKQGR 169


>gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 178

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+ + +   +  LI +M E M++ +G GLAA QIGV  +LV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      + INP +   SD+     EGCLS+P  R  V R   +    
Sbjct: 61  IYGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRWQALHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +D          DG  A  +QHE DHL G+L+   ++   R
Sbjct: 121 VDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMRVTDFSR 161


>gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040]
 gi|99038698|gb|ABF65310.1| formylmethionine deformylase [Ruegeria sp. TM1040]
          Length = 165

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S +   ++E   ++P   A +KR   +TVR+++ +  
Sbjct: 61  VDGSSERGRAV--RLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  G+ AT +QH++DHLNG ++ DHLS++KRDM+ KK  KL +
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKARKLAR 165


>gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 179

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P++  +  ++  L+ ++L+ M++ +G GLAA QIGV  R+V
Sbjct: 1   MAVRDILKMGDPRLLRVAQPVQAFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V  NP I   SD+     EGCLS+P  R  V R   I  +
Sbjct: 61  IFGSGQTNPRYPDAPVVPRTVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRWQRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D          +G  A  +QHE DHL+G L+   +    R
Sbjct: 121 GFDQYGDPIDRTVEGFHARVVQHECDHLDGKLYPMRVRDFTR 162


>gi|256420948|ref|YP_003121601.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
 gi|256035856|gb|ACU59400.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
          Length = 192

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 13/181 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+LR++   I      +  L+ NM E MY+++G+GLAA QI    RL V+
Sbjct: 1   MILPIVAYGHPVLRKMCEDITPDYPQLEQLLANMWETMYASNGVGLAAPQINRPIRLFVV 60

Query: 62  D-------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D                         FIN  I++ + +   Y EGCLSIP  R DV R  
Sbjct: 61  DSEQIINSLEEDEKKDFPGDNGIKQAFINAHIVSTAGEEWAYNEGCLSIPKVREDVYRPE 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +T+RY+D   Q Q     G+ A  + HE DH++G LFIDHL  LKR MI  K+  + + 
Sbjct: 121 SVTLRYVDEKFQPQEKTFTGITARVIFHEYDHIDGKLFIDHLKPLKRRMIKGKLEDISKG 180

Query: 169 R 169
           +
Sbjct: 181 K 181


>gi|295111635|emb|CBL28385.1| peptide deformylase [Synergistetes bacterium SGP1]
          Length = 182

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 6/161 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +  +PDP+L++V+ P+   + ++ + +  M  VM  +DG+GLAA Q+GVL ++ V+D 
Sbjct: 24  LEVRRYPDPVLKKVAEPVTVFDDELADFVGKMRTVMRVSDGVGLAAPQVGVLRQIAVVDY 83

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           ++ A+       +        ++       CLS P   A V+R  ++ V   D   +  +
Sbjct: 84  KEEAYDLINPRVLEQGGEQEGEEG------CLSFPGIYAMVRRPEWVRVEAQDVRGEVHV 137

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             A G LA    HE+DHLNG LFID+LS LKR  I +KM K
Sbjct: 138 HEASGFLARAFLHEMDHLNGKLFIDYLSPLKRGAIRRKMMK 178


>gi|300781120|ref|ZP_07090974.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
 gi|300532827|gb|EFK53888.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
          Length = 176

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+L   +  I+  +  +  L+ +MLE M +  G+GLAA QIG+  R+ V
Sbjct: 1   MTVRPIRIFGDPVLNSEATRIDTFDEALRTLVSDMLETMDAAGGVGLAANQIGLTKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP      D   +  EGCLSIP  +A+V+R   +  R  D   +
Sbjct: 61  YDCNGMRGA-----LINPVWEPIDDYVQIGPEGCLSIPGIQAEVERHENVIARGQDEFGR 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I  +GLLA C+QHE DHL+G+LF+  L    R    
Sbjct: 116 PVAIRGNGLLARCIQHETDHLDGVLFLRRLEPEVRKEAM 154


>gi|306822699|ref|ZP_07456077.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309800930|ref|ZP_07695062.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|304554244|gb|EFM42153.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308222466|gb|EFO78746.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 161

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V                 EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKIGYVLNPVLEETSGE------QYGDEGCLSVPGLWYKTRRADYAQVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    + M    Q
Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 161


>gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46]
 gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343]
 gi|253563049|ref|ZP_04840506.1| peptide deformylase [Bacteroides sp. 3_2_5]
 gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16]
 gi|81315745|sp|Q5LEQ9|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81690706|sp|Q64VP5|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46]
 gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343]
 gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5]
 gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16]
 gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R]
          Length = 184

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+VVI
Sbjct: 1   MILPIYVYGQPVLRQVAEDITVDYPNLKELIENMFETMDHADGVGLAAPQIGLPIRVVVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +          ++     +IN  I     +    +EGCLS+P     VKR + I VRYMD
Sbjct: 61  NLDVLSEDYPEYKDFRKAYINAHIDVVEGEEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108]
 gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108]
          Length = 185

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LIDNM E M + +G+GLAA QIG+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +          ++    V+IN  I+  + +    +EGCLS+P     V+R   I V+Y+D
Sbjct: 61  NLDVLSDDMPEYKDFRKVYINAHILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K+  L++ +
Sbjct: 121 ENMVAHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLGSLLKGK 173


>gi|255656564|ref|ZP_05401973.1| peptide deformylase 2 [Clostridium difficile QCD-23m63]
 gi|296449984|ref|ZP_06891748.1| peptide deformylase [Clostridium difficile NAP08]
 gi|296878365|ref|ZP_06902373.1| peptide deformylase [Clostridium difficile NAP07]
 gi|296261254|gb|EFH08085.1| peptide deformylase [Clostridium difficile NAP08]
 gi|296430663|gb|EFH16502.1| peptide deformylase [Clostridium difficile NAP07]
          Length = 146

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I            + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGEELIELINPEIIETSGE------QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HELDHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHELDHLDGILFVDKIEK 146


>gi|148245003|ref|YP_001219697.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326830|dbj|BAF61973.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 13/179 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PD  LR  ++ +  +N  I  LI NM E MY+ +GIGLAA Q+    ++VVI
Sbjct: 1   MILPILSYPDKRLRIKAKNVNIVNKTIQTLIKNMFETMYARNGIGLAATQVNQHLQIVVI 60

Query: 62  DLQDHAH-------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D+ +                +K   +      I        + EGCLS+ D++A+++R+ 
Sbjct: 61  DVPNSQFLFKNRKNNSQKLLQKQHPLCFINPEIKEKYGQEKHTEGCLSVSDFQAEIQRAN 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            I V+ ++   +  I+ A GLLA C+QHE+DHL GILF+D+LS+LK+  + +++ K+ +
Sbjct: 121 HIKVKALNEKGEIFILQATGLLAICIQHEIDHLKGILFVDYLSKLKQKRLLERIKKMTK 179


>gi|145594886|ref|YP_001159183.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145304223|gb|ABP54805.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 167

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59
           M  +P+ I  DP+LR  + P+   ++D+  L+ ++++ +    G  G+AA QIGV  ++ 
Sbjct: 1   MTMRPIRIIGDPVLRTPAAPVTSFDADLRALVADLMDTLLGAPGRAGVAAPQIGVSAQVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D   H         +    +   DD     EGCLSIP       R+   T R MD + 
Sbjct: 61  VYDADGHRGH------LINPTLELGDDRQDDDEGCLSIPGLYFPTPRAMRATARGMDQHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           Q   I   G LA  LQHE DHL G L++D L    R    +++ 
Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGETRRRALREVR 158


>gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14]
 gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14]
          Length = 213

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 82/162 (50%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  D  L    R + +   ++  L++++   MY+  G+GLAA Q+G+  R+ V D
Sbjct: 38  VRPLTLLGDAALAAPCREVTEFGPELAALVEDLFATMYAARGVGLAANQVGLDLRVFVYD 97

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A V+R     V       +  
Sbjct: 98  CPDDEDVRHLGHLVNPRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPV 157

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL+G L++DHL+  +R  + ++ ++
Sbjct: 158 TVEGTGFFARCLQHECDHLDGRLYVDHLTGWRRRKVLRQAAR 199


>gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
 gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
          Length = 169

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+K  + ++  PILR+ S  + + N ++ N +D M++ M   +GIGLAA Q+G+  R  V
Sbjct: 1   MIKLNIYVYEAPILRKKSEEVVEFNDELRNTLDEMVKTMRLANGIGLAANQVGIGKRFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D   +      +NP+I++F ++   +QEGCLSIP    +V R   I VRY D N  
Sbjct: 61  LEIDDEITK-----VVNPEILSFGEEMVEFQEGCLSIPGIFKNVLRPESIVVRYQDENGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 +GL +   QHELDH++GILFID +S + R++I KK+  + + 
Sbjct: 116 FVERELNGLKSRAFQHELDHIDGILFIDKISPMSRNLIRKKLEVMKKN 163


>gi|88608268|ref|YP_506280.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama]
 gi|123763725|sp|Q2GE16|DEF_NEOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|88600437|gb|ABD45905.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama]
          Length = 186

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 13/180 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55
           M    L+I PDP+L  VS  +  ++ +    +D+MLE MY   GIGLAAVQ+GVL     
Sbjct: 1   MALLALIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIV 60

Query: 56  --------YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
                   +    ++   +     P  F+NP+II FS +     EGCLS+P+   ++ R 
Sbjct: 61  VDVPVGKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRP 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + V+Y++ + +  ++ A+G LA C+QHE+DHLNG L++ HLS+LK D+  KK +++ +
Sbjct: 121 DAVVVKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAEIKK 180


>gi|315637680|ref|ZP_07892885.1| peptide deformylase [Arcobacter butzleri JV22]
 gi|315478027|gb|EFU68755.1| peptide deformylase [Arcobacter butzleri JV22]
          Length = 171

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 103/170 (60%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ +EK +S++  L+D+M E M + +G+GLAA+Q+ V   ++VI
Sbjct: 1   MVREVITYPNKLLRLKSKDVEKFDSELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    I     +IT  D   V+ EGCLS+P +  DV R+  I V Y +   
Sbjct: 61  NLPNEEDVQDKNDLIEAINPVITHKDGTQVFTEGCLSVPGFSEDVTRAEHIVVEYFNRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q + ++G LA   QHE++HL+G LFI++LS +KR    K+  K ++ +
Sbjct: 121 EKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDK 170


>gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
           18228]
 gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
           18228]
          Length = 184

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           +    V+INP I+   D+    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLSDDMPEFKDFKRVYINPHILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N      + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +V  +
Sbjct: 121 ENMTAHDEWVEGYLARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMVNGK 173


>gi|311739504|ref|ZP_07713339.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305320|gb|EFQ81388.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 170

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I+ DP+L   +  I K ++ +  L  +MLE M    G+GLAA Q+G+  + + 
Sbjct: 1   MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDKAGGVGLAANQVGI-LQRIF 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         +NP      +      EGCLSIP   A+  R   + V   D   +
Sbjct: 60  VYDCSHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163


>gi|114766696|ref|ZP_01445635.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541086|gb|EAU44141.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 164

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+E I  +I  +  +M++ M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARPCIPWPDKRLRSPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+   NP+I+  S     + E   ++P   A ++R   +TVR+++   +
Sbjct: 61  VDASEE--RGQPVRMANPEILHASVKLRSHDEASPNLPGVWAKIERPRAVTVRFLNEAGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +     GL AT +QH++DHLNG ++ DHLS++KRD++ ++  K
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGKMYFDHLSKVKRDILLRRAKK 162


>gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 178

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/159 (37%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L R S P+++ N  ++  LI++M E MY+ DG GLAA QIG+  R+V
Sbjct: 1   MAVRKILKMGDSRLLRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP I   SD+     EGCLSIP  R  V R A I    
Sbjct: 61  IFGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPRWAKIHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D         ADG  A  +QHE DHL+GIL+   +  L
Sbjct: 121 FDQFGNKISRNADGFHARVVQHECDHLDGILYPFRIDDL 159


>gi|270284179|ref|ZP_05965690.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270277263|gb|EFA23117.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 169

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ + PDP+LR    PI++I   I +L+ ++L+ +      GL+A QIGV  R    
Sbjct: 10  AIRPIRVVPDPVLRTQCDPIKEITPAIRHLVQDLLDTVDDPGRAGLSANQIGVPLRAFSY 69

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++          V    +            EGCLS+P      +R+ +   R +D +   
Sbjct: 70  NIDGKIGYILNPVLEETRGE------QYGDEGCLSVPGLWYKTRRADYARCRGIDLDGNE 123

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ++  DG++   +QHE DHL+G +++D L + +R    K M +  Q
Sbjct: 124 VVLEGDGIMGRMIQHETDHLDGHVYLDRLEKEERRAALKYMREHQQ 169


>gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
 gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
          Length = 195

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 12/179 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L++ +  I +   ++  LI+NM E MY+++G+GLAA QIG+  RL VI
Sbjct: 1   MILPIVAYGAPVLKKEAAEISEEYPNLDQLIENMWETMYASNGVGLAAPQIGLSIRLFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +    VFINP +I        + EGCLSIPD R DV R   
Sbjct: 61  DTAPFSEDDELDELEAETLKSFKKVFINPVVIEEDGSLWEFNEGCLSIPDVREDVSRHER 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           I + Y D   + Q +   GL A  +QHE DH+ G+LF DHL+ LKR ++  +++ + + 
Sbjct: 121 IKIHYFDQQFKEQELVLTGLAARVVQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSISKG 179


>gi|317178847|dbj|BAJ56635.1| peptide deformylase [Helicobacter pylori F30]
          Length = 175

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|312132641|ref|YP_003999980.1| def1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773592|gb|ADQ03080.1| Def1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 162

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MSIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                ++          EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKVGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++   GL+   LQHE DHL+G +++D L + +R    + M    
Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRNRQ 160


>gi|298252788|ref|ZP_06976582.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
 gi|297533152|gb|EFH72036.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
          Length = 162

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR     I +I   + +L+D++LE +      GL+A QIGV +R   
Sbjct: 1   MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                +I          EGCLS+P      +R+ +     +D + +
Sbjct: 61  YNINGRIGYIL------NPVIEELKGEQYDDEGCLSVPGLWYKTRRANYARACGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++  +GL+A  +QHE DHL+G +++D L +  R    +++   ++ 
Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMRN 162


>gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455]
 gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455]
          Length = 159

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++  +V FPDP+LRR +RP+   +  +   +D M  VM   DG+G+AA Q+GV  ++ V+
Sbjct: 1   MQLKIVEFPDPVLRRATRPVTVFDEALKTFVDEMTIVMKDDDGVGIAAPQVGVSKKVAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +           +   +I  +      +EGCLS P    +V+R+  + V   D     
Sbjct: 61  CFEGER------YVLVNPVIVEATGTQRGEEGCLSFPGIFGEVERAERVVVECQDETGAK 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   A+G +A   QHE++HL G L IDH S +KR++I K++ K  
Sbjct: 115 RRHEAEGFVARAFQHEIEHLEGKLLIDHFSPMKRELIRKRLMKRK 159


>gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
 gi|189431410|gb|EDV00395.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
          Length = 184

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VVI
Sbjct: 1   MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           +     +INP I+   ++    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLSEDMPEFKDFRRAYINPHILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +      + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIKGKLNNMLKGK 173


>gi|302389590|ref|YP_003825411.1| peptide deformylase [Thermosediminibacter oceani DSM 16646]
 gi|302200218|gb|ADL07788.1| peptide deformylase [Thermosediminibacter oceani DSM 16646]
          Length = 155

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ S+ +   +  +  L+ +M E M   +G+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQYGDEVLRKKSKKVTVFDEKLKQLLADMAETMRHANGVGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II+   +    +  CLSIP    +V R   + VR  +   +
Sbjct: 61  IDVGEG-----LIELINPEIISKEGEVVEIEG-CLSIPGITGEVPRPQKVRVRAQNPEGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I  + LLA  L HE+DHL+GILFID   R+
Sbjct: 115 FVEIEGEDLLARALCHEIDHLDGILFIDKAKRI 147


>gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
          Length = 160

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 9/159 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +VI   P+LR V++P+E+I+  +  L+ +M E MYS DG+GLAA Q+GV  R+VV
Sbjct: 1   MAKLKIVIAGAPVLREVAQPVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +       +  +            EGCLS+PDY  +V+RS ++   + D   Q
Sbjct: 61  IDVGEGLYELINPEIVKREGKVLGS------EGCLSVPDYEGEVERSEYVECEFTDKTGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKRD 156
             ++ A GLLA C+QHELDHL+GILFID    +S  +++
Sbjct: 115 RMLLSASGLLAICIQHELDHLDGILFIDKAKTISPKQKE 153


>gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
          Length = 193

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 17  LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   
Sbjct: 77  AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 137 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 183


>gi|320533868|ref|ZP_08034450.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133894|gb|EFW26260.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 175

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIG+  R   
Sbjct: 13  MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          +     +    D++    EGCLS+P      +R+ +     +D + +
Sbjct: 73  WNIDGEIG----YILNPRIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE DHL G L++D L R  R    K++ 
Sbjct: 129 EVVVEGEELMARCIQHECDHLEGRLYLDRLDRKNRAKAMKELR 171


>gi|148273059|ref|YP_001222620.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830989|emb|CAN01934.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 163

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ VS  I +I+  +  L++++L+ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +  +  EGCLS+P       R     +  +D   +
Sbjct: 61  YNVGPAFG-----YVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVITGIDLEGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   G+LA   QHE+DHL+G++++D L + +R    K++ +
Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159


>gi|256826367|ref|YP_003150327.1| peptide deformylase [Kytococcus sedentarius DSM 20547]
 gi|256689760|gb|ACV07562.1| peptide deformylase [Kytococcus sedentarius DSM 20547]
          Length = 192

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L + ++ + ++  +I  L+ +M + M + +G+GLAA Q+GV +R+ V
Sbjct: 1   MAVRPITIIGHKALHQPTKKVREVTDEIRTLVADMFDTMEAAEGVGLAANQVGVRWRIFV 60

Query: 61  IDLQDHAHRKN-------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D                  V     +   S D     EGCLS+P       RS +  V 
Sbjct: 61  YDCTHDPEAGPDARGVVVNPVLEKEHVSPLSADPEADHEGCLSVPGESFPTARSDWARVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D +     +   GLL  CLQHE DHL+G L+++ LS   +      + +
Sbjct: 121 GTDLDGNAISVEGTGLLGRCLQHETDHLDGHLYVERLSPEDKRRARDAIKE 171


>gi|298529648|ref|ZP_07017051.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511084|gb|EFI34987.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 169

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +  +PD IL + +RP+EKI+  I++L  +M  +MY   GIGLAA Q+G   R+V +
Sbjct: 1   MSRKIHTYPDKILTQKARPVEKIDDYIIDLSRDMARLMYEHRGIGLAAPQVGESLRVVTV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL    ++++   +INP+II   D+ +  +EGCLS+  Y+  V R+  + VR ++   + 
Sbjct: 61  DLSGPDNQEDLFTYINPEIIASEDETTT-EEGCLSVAGYQTRVCRARKVKVRALNLQGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            I   + L A CLQHE+DHLNGILFIDH+SRLKR M  KK+ K ++ +
Sbjct: 120 VIHEGEDLWAVCLQHEIDHLNGILFIDHISRLKRAMYDKKVKKWLENK 167


>gi|89074343|ref|ZP_01160825.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049830|gb|EAR55371.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 170

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML  MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEDVADVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +  +  +         I   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSEERNEPH---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168


>gi|306836177|ref|ZP_07469161.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
 gi|304567898|gb|EFM43479.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
          Length = 184

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  + ++ DP+L   +  I   ++ +  L   MLE M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MAELDIRLYGDPVLSSRAEEITTFDTGLRTLAQTMLETMDAAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D           V INP      +D     EGCLSIP   AD  R   + V   D   +
Sbjct: 61  YDCSP-IQAGLRGVLINPVWTPLGEDMQTGPEGCLSIPGISADTPRYNRVFVSGRDVEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GLLA C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163


>gi|326798583|ref|YP_004316402.1| peptide deformylase [Sphingobacterium sp. 21]
 gi|326549347|gb|ADZ77732.1| Peptide deformylase [Sphingobacterium sp. 21]
          Length = 190

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L+R +  I+K   ++ NLI NM E MY+  G+G+AA Q+G+  RL V+
Sbjct: 1   MKLPIVAYGDPVLKRKAIDIDKDYPELENLIANMFETMYAAHGVGIAAPQVGLSIRLFVV 60

Query: 62  DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D    A    P       VFIN  I     +   + EGCLSIPD R DV R + I +RY 
Sbjct: 61  DASPFAEDDAPELKDFKKVFINAHIEEEEGEKWEFNEGCLSIPDIREDVSRHSIIHIRYF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D N        DGL A  +QHE DH+ G LF D LS L++ M+  K+  + + 
Sbjct: 121 DENWVEHREKYDGLAARVIQHEYDHIEGKLFTDRLSVLRKAMLKSKLDAISKG 173


>gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383]
 gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383]
          Length = 177

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  +L++
Sbjct: 1   MIREILKMGDPRLLEVAKPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     ADG  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQYGEKIDRVADGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|150396253|ref|YP_001326720.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150027768|gb|ABR59885.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 163

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P+  L   + P+ + +  +  L  ++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRSIIRYPNAALATATEPVSRFDESLRQLAHDLIDTMRAAPGIGITAPHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   +   +  P  F+NP+I+  S D + + EG +S+P    +V+R A + VR+     +
Sbjct: 61  I---ETDPQAGPRSFVNPEILWQSADSTRHSEGSVSMPGIAEEVERPARVRVRFQTLEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A CLQHE+D L+GI +I  LSRLKR+   K+  KL
Sbjct: 118 THEEEAAGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAIKRFEKL 162


>gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010]
 gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010]
          Length = 186

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V++ I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 1   MILPIYTYGQPVLRKVAQDIPTDYPDLQELIQNMFETCSASDGVGLAAPQIGKSIRVVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       +     +  + +EGCLS+P     V+R+  + + ++
Sbjct: 61  DLDVMSDAFPEYKDYKHAFINGHILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIEWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N QH   + DG LA  +QHE DHL G +F D +S  ++ MI  KM  ++Q +
Sbjct: 121 DENLQHHDEWVDGFLARVIQHEFDHLEGKVFTDRVSPFRKQMIKNKMKAMLQGK 174


>gi|237786237|ref|YP_002906942.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759149|gb|ACR18399.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 220

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   + P+ +   +I  L+ +M E +  + G+GLAA QIGV  RL V
Sbjct: 11  MTVRPIVIAGDPVLHNPTEPVTESPEEIAELVADMYETLELSHGVGLAANQIGVAKRLFV 70

Query: 61  IDLQD----------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
            D  D                           NP++  +    T         EGCLS+P
Sbjct: 71  YDCPDIEGPDGDSKSEEELKAQGGPRRKGCVVNPVLETSEIPETMPATDGSDAEGCLSVP 130

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                  R+ +  V   D + +   +   G  A CLQHE+ HL+G L+ D L      M 
Sbjct: 131 GLDFPTGRAHWARVTGTDEHGEPVRVEGYGFFARCLQHEVGHLDGYLYTDMLIGRWARMA 190

Query: 159 TKKMSK 164
            KK+ +
Sbjct: 191 KKKIKR 196


>gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|238058216|sp|B1GZ10|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 168

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +  + DP LR+ +  + +IN  I  L  +MLE MYS  G+GLAA Q+G+L R  V
Sbjct: 1   MAKLKIKKYGDPALRKRAEAVSEINEIIKELASDMLETMYSASGVGLAAPQVGILLRFCV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+  +         +    I   ++    +EGCLS P +  +V R   I   Y D N  
Sbjct: 61  IDVDPNKKSPI---VMINPEIISGENKITAEEGCLSFPGFYGNVNRFENIIAGYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            Q I A   LA  LQHE+DHL+  LFID+L   KR+ I 
Sbjct: 118 RQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWKRESIE 156


>gi|219669870|ref|YP_002460305.1| peptide deformylase [Desulfitobacterium hafniense DCB-2]
 gi|254767579|sp|B8FS81|DEF_DESHD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219540130|gb|ACL21869.1| peptide deformylase [Desulfitobacterium hafniense DCB-2]
          Length = 150

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V     +LR  + P+++I  +I  L+DNML+ +Y  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIYQIVEIGSEVLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP II    +    +  CLSIP     V R+A + V  ++   +
Sbjct: 61  IDVGEG-----PLELINPVIIAKEGEDLDDEG-CLSIPGITGQVARAAKVKVEALNRQGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q+I  +GLL+ CLQHE+DHL GILF+D   +  R 
Sbjct: 115 LQVIEGEGLLSRCLQHEIDHLEGILFVDKAKKTSRR 150


>gi|329943974|ref|ZP_08292243.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531407|gb|EGF58249.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 163

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          +     +    D++    EGCLS+P      +R+ +      D N +
Sbjct: 61  WNIDGEIG----YILNPKIVELSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGTDLNGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE DHL G L++D L R  R    K++ 
Sbjct: 117 EVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAAAMKELR 159


>gi|299136398|ref|ZP_07029581.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
 gi|298600913|gb|EFI57068.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
          Length = 185

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +V +PDP+L +    + +   ++  L+D M E MY+  GIGLAA QIG+  ++ VID
Sbjct: 18  IHEVVKYPDPVLSKPGEKVTEFTPELAQLVDEMFESMYAAQGIGLAAPQIGISKQITVID 77

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +      ++ +  INP+II   +   V +EGCLS+P+ R  V R+A + VR  +   +  
Sbjct: 78  VSFKERPEDKLALINPEIIER-EGKQVEEEGCLSLPEIREKVSRAARVKVRAQNVKGEFF 136

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +  + LLA  LQHE+DHL+GILFI+HLSRLKRD++ +++ KL +  +
Sbjct: 137 EVEGEELLARALQHEIDHLHGILFIEHLSRLKRDLVHRRIRKLQKNGE 184


>gi|108762860|ref|YP_635455.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108466740|gb|ABF91925.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 168

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 5/168 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+P  +L   ++P+      +  L++ M E M   +GIG+AA Q+G   R+ ++
Sbjct: 1   MARDIVIWPHKVLTSSTKPVTDFGPPLETLLEQMAESMKEAEGIGIAANQVGESLRVALV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +D    +     I  K    +      +EGCLS+P       R   + VRY D +A+ 
Sbjct: 61  GREDGTFFEIVNPQILEKKEPVT-----MEEGCLSVPREWEKCPRFHKVKVRYQDKSAEW 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+G LA  LQHE+DHL+G +F+DHLS LKR +I  +M KL +++
Sbjct: 116 HELEAEGRLAHVLQHEIDHLDGHVFVDHLSSLKRTLILDRMKKLQKVK 163


>gi|297379991|gb|ADI34878.1| peptide deformylase [Helicobacter pylori v225d]
          Length = 175

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+ +
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFFEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKVLEASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|15888871|ref|NP_354552.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396558|sp|Q8UF49|DEFL_AGRT5 RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15156637|gb|AAK87337.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 164

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L  +  P+   +  +  L+ ++++ M +  G+G+ A  IGVL R+ V
Sbjct: 1   MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +           + +INP+I + S     + EG +S+P +  +V+R + + VR+ D    
Sbjct: 61  L----ELTPGTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGA 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q   A+G  A C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 117 EQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160


>gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
 gi|238692288|sp|B3EPG5|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
          Length = 185

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + D +LRR ++P+++ ++ +  LI NMLE M + +GIGLAA Q+GV  RL+V+
Sbjct: 1   MILPINTYSDEVLRRKAKPLKESDAQLEELISNMLESMRNAEGIGLAAPQVGVSLRLIVV 60

Query: 62  DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL   +     +PMV INP I++     S+ +EGCLSIPD R DV R + I ++Y D N 
Sbjct: 61  DLSLAEGYEAASPMVVINPHILSVKSFNSM-EEGCLSIPDVRGDVVRPSAIQLKYRDRNF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +  I   D L A  +QHE+DHL+G LF+D + R  R  I K++  L + 
Sbjct: 120 EECIGEFDRLAARVIQHEIDHLDGTLFVDRMQRRDRRKIQKELDALSRG 168


>gi|317009197|gb|ADU79777.1| peptide deformylase [Helicobacter pylori India7]
          Length = 174

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 101/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +        +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPKEDGVQHKEDCLEIINPKLIEAGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171


>gi|269102516|ref|ZP_06155213.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162414|gb|EEZ40910.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 171

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  L+D+ML+ MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLVDDMLQTMYETGNGIGLAAPQVGRKEAI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +  +            I   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSEERNEPQ---VFINPKIVRGENPVVGQEGCLSVPDYYADVERFEKIAITALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 118 GNEINMERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLRSQ 168


>gi|224419234|ref|ZP_03657240.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|253826952|ref|ZP_04869837.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|313142736|ref|ZP_07804929.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|253510358|gb|EES89017.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|313131767|gb|EFR49384.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
          Length = 168

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 2/168 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++ +P+PILR++S+PIE  N  +  L+D+M EVM   +G+G++A+Q+    R ++I 
Sbjct: 1   MLEVITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLIC 60

Query: 63  LQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           L D    ++    +          D   ++ EGCLS+P++  +VKR++ + V Y D    
Sbjct: 61  LPDEEGNQHKEDLLEIINPQILEKDGEIIFNEGCLSVPEFYEEVKRASSLKVAYQDRYGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + + A   LA  LQHE+DHLNGILFID LS LKR    K++ +  + 
Sbjct: 121 PKEMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQKRKG 168


>gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205]
 gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205]
          Length = 185

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V+  I     D+  LI+NM E + S++GIGLAA QIG+  RLVVI
Sbjct: 1   MILPIYIYGQPVLRKVAEDITPDYPDLKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       +    ++    +EGCLSIP     V R   I V+YM
Sbjct: 61  DLDVLSEDFPEYKGFRHAFINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D +      + +G LA  +QHE DHL G +F+D +S L+++MI  K+  +++ 
Sbjct: 121 DEDFNEHDEWIEGYLARVMQHEFDHLEGTMFVDRVSPLRKNMIAGKLKSIIKG 173


>gi|90579699|ref|ZP_01235508.1| peptide deformylase [Vibrio angustum S14]
 gi|90439273|gb|EAS64455.1| peptide deformylase [Vibrio angustum S14]
          Length = 170

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML  MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +  +            I   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSEERNEPQ---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168


>gi|330837393|ref|YP_004412034.1| peptide deformylase [Spirochaeta coccoides DSM 17374]
 gi|329749296|gb|AEC02652.1| peptide deformylase [Spirochaeta coccoides DSM 17374]
          Length = 167

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 4/167 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +V   + +LRR + P++  ++ +  L+D+M + +    G+GLAA Q+GV  RL ++ 
Sbjct: 1   MLEIVTLGEDVLRRRAEPVKVFDAALRLLVDDMFDSLAQERGVGLAAPQVGVSQRLFIV- 59

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                      VFINP+II  S + + Y+EGCLSIP    DV R   IT++  D   +  
Sbjct: 60  ---DIEGGEKGVFINPEIIETSMEQTPYEEGCLSIPGIWHDVVRPQRITMQAQDVTGKFF 116

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + ADG+ A  LQHE DHLNG LFID L+   +  +     K  + R
Sbjct: 117 TVKADGMFARVLQHEYDHLNGTLFIDRLNEQDKKKVLDAYEKKQKPR 163


>gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN]
 gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN]
          Length = 187

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+     P+LR+V+  I     ++  LI +M E   ++DGIGLAA QIG   RLVVI
Sbjct: 1   MILPIYTLGQPVLRKVAEDIPLDYPNLQQLIADMFETCSASDGIGLAAPQIGKSIRLVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       + T   +    +EGCLS+P    +V R   I V+Y+
Sbjct: 61  DLDVISESFPEYKDFKHAFINGHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVKYV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +    + DG LA  +QHE DH+ G +F D +S  ++ +I KKM  L Q R
Sbjct: 121 DENLEEHDEWIDGYLARVIQHEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGR 174


>gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6]
          Length = 178

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L R+ V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFV 60

Query: 61  IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P         F+NP+I+  S+D     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N +   + A+GLLA C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGEWFELEAEGLLARCIQHENDHLDGITIME 155


>gi|159038089|ref|YP_001537342.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916924|gb|ABV98351.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 168

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59
           M  +P+ +  DP+LR  + P+   ++++  L+ ++++ +    G  G+AA QIGV  R+ 
Sbjct: 1   MTMRPIRLIGDPVLRTPAEPVTSFDAELRALVADLMDTLLGAPGRAGVAAPQIGVSARVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D   H              +   D+     EGCLS+P       R+   T   +D + 
Sbjct: 61  VYDADGHRGHLV------NPTLELGDEQQDDDEGCLSVPGLYFPTSRAMHATAHGVDQHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           Q   I   G LA  LQHE DHL G L++D L    R    +++ 
Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGEIRRRALREIR 158


>gi|85700127|gb|ABC74513.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 101/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      +       +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIGTGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|315586543|gb|ADU40924.1| peptide deformylase [Helicobacter pylori 35A]
          Length = 175

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289]
 gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289]
          Length = 214

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 29  MVLPIYTYGQPVLRKVAADIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVI 88

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       +     +    +EGCLS+P     V R+  I V+Y+
Sbjct: 89  DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL+G +F DHLS  +R MI+ K+  L+Q +
Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202


>gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
 gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
          Length = 174

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + D +L+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ 
Sbjct: 1   MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V         +     INP I   +++   ++EGCLS+P     V+R   + + Y++ N 
Sbjct: 61  VC----EDGNRKIRKIINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVKLNYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+ LLA  +QHE DHLNGILF++ +S + + +I KK++ + + 
Sbjct: 117 ETVEEIAEDLLAVVVQHENDHLNGILFVEKISPIAKRLIAKKLANMKKE 165


>gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
 gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
          Length = 177

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV   DP LR+ +  I K++ D+  L  +MLE MY+ DG+GLA  Q+GV+ R++V
Sbjct: 1   MAVLKLVYEGDPRLRQKAVRIRKVDDDLRRLAADMLETMYAADGVGLAGPQVGVMRRIIV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I +    ++       + +    I  +    V  EGCLSIP++  +V R+  +TV+  D 
Sbjct: 61  IGVPAGFENEDDPPIEMALINPEIVRASGRQVGPEGCLSIPNWYGEVPRAMHVTVKARDL 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + +   I A G LA  LQHE+DHL+GILF D +  
Sbjct: 121 DDREIRIKASGGLARILQHEIDHLDGILFTDRVED 155


>gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 188

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  D +L   +  +   + ++  L+  M + M    G+GLA  Q+GV  RL V
Sbjct: 1   MAVLPIRITGDRVLHTRADEVTAFDRELRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               D     +       V     + T   D     EGCLS P  R  ++R+  + ++ +
Sbjct: 61  YGWTDDDEVLHRGVAINPVLWQSPLETGPLDEDAECEGCLSFPGERFPLRRAERVILQAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D       +  +G LA   QHE DHL G+L++D L
Sbjct: 121 DLEGAPFEVRTEGWLARIFQHECDHLEGVLYVDRL 155


>gi|289706123|ref|ZP_06502494.1| peptide deformylase [Micrococcus luteus SK58]
 gi|289557156|gb|EFD50476.1| peptide deformylase [Micrococcus luteus SK58]
          Length = 210

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 8/175 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   +P+ ++ +P+L R +  +E I+ +I  LI++M     +  G+GLAA Q+GV  R+ 
Sbjct: 1   MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------RADVKRSAFITVR 113
                D     N    INP +                             ++R   + + 
Sbjct: 61  TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               + +     A+G  A  +QHE DHLNG L+++ L   K     K+  +  +L
Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEG-KWQRRWKRAQRAERL 174


>gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
 gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
          Length = 173

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V+ P+++I  DI  L+ +M + MY+ DGIGLAA Q+ V  +++V
Sbjct: 1   MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R      +    I      + Y+EGCLS+PD    V+R+A+I VR +D + +
Sbjct: 61  IDVSEKQNRL---QVLINPTIVKMGGKAEYEEGCLSVPDVFESVRRAAWIHVRALDLDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A+GL A C+QHE+DHL G++F++HLS   +  I   +SK  +
Sbjct: 118 TIDVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSKQSR 164


>gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824]
 gi|3023622|sp|O05100|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824]
 gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
          Length = 150

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR +EKI+  ++ LID+M E MY+ DG+GLAA Q+G+L RLVV
Sbjct: 1   MAIRSIRKYGDELLRKKSRKVEKIDKRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S      +  CLSIP+ + +V+R  ++  + ++   +
Sbjct: 61  IDVGEG-----PVVLINPEILETSGKAVDVEG-CLSIPERQGEVERPTYVKAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +I A+ L A  + HE DHLNG+LF+D L
Sbjct: 115 EIVIEAEDLFARAICHETDHLNGVLFVDKL 144


>gi|260465452|ref|ZP_05812642.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259029756|gb|EEW31042.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 166

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP+P+LR V+ P++  +SD+  L  ++++ M++  GIG+    IG+L RLVV
Sbjct: 1   MAVRPIIRFPNPLLRAVAEPVKLFDSDLHGLAGDLVDTMHAAPGIGITGPHIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L        P +++NP I+  S +   + EG +S+P    D++R A I VRY D +  
Sbjct: 61  IQLP---SAAKPGIYVNPSIVHASTEMIRHAEGSVSMPGVTEDIERHARIIVRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   ADGLLA C QHE+D L+G+ +   L+RLKRD + K+  KL++
Sbjct: 118 EQFENADGLLAVCHQHEIDQLDGLFWTHRLTRLKRDRLVKRYGKLMR 164


>gi|217034160|ref|ZP_03439580.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10]
 gi|216943444|gb|EEC22900.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10]
 gi|317182103|dbj|BAJ59887.1| peptide deformylase [Helicobacter pylori F57]
          Length = 175

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
 gi|254767571|sp|C0QZQ2|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
          Length = 187

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+ D  L++VS  IEKI+ +I+ LID+M E MY   G+GLAAVQIGVL RLVVI
Sbjct: 1   MLRELVIYGDERLQKVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGVLKRLVVI 60

Query: 62  DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D    + P      INP+II  +D+    +EGCLS P+ R DV R   I V+Y+D  
Sbjct: 61  SVPDFDDEEKPDFKLALINPEIIWHNDETESLEEGCLSFPEIRDDVARYTQIKVKYLDRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              QI+ A+  +A  LQHE+DH NGI FID L   ++  + +++ +L   
Sbjct: 121 GNEQILDAENYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKELRNN 170


>gi|170781748|ref|YP_001710080.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156316|emb|CAQ01464.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 163

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ VS  I +I+  +  L++++L+ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +  +  EGCLS+P       R     +  +D + +
Sbjct: 61  YNVGPAFG-----YVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVISGLDLDGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   G+LA   QHE+DHL+G++++D L + +R    K++ +
Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159


>gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
 gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
          Length = 145

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++P++++      LI NM + MY   G+GLAA QIG+  R++V
Sbjct: 1   MAVLSIRTIGDPVLRTEAKPVDEVTEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          +            + +EGCLSIP+   +V+R+A + V  +D + +
Sbjct: 61  VDVGEGPLALINPEIVES------SGSEIDEEGCLSIPNENGNVERAARVVVDALDSDGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I A+GLLA  LQHE+DHL GILF+D + 
Sbjct: 115 EVEIEAEGLLARVLQHEIDHLEGILFVDKVE 145


>gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
          Length = 164

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DP+LR+ + P++ INS I  L+ NM + MY   G+GLAA QIG+  R+VV
Sbjct: 1   MAIYNIVEVGDPVLRQKANPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          +    I  +       EGCLSIP     V R++ I V+ ++ N +
Sbjct: 61  VDIGEGLLE------LINPRIIKASGQETDTEGCLSIPGTLGQVPRASKIQVQALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               +  G +A  +QHELDHL+GILFID    L++      +    + +
Sbjct: 115 QVEYHVKGFMARAVQHELDHLDGILFIDKAESLRKQFEDVVLENKAKAK 163


>gi|319950533|ref|ZP_08024443.1| peptide deformylase [Dietzia cinnamea P4]
 gi|319435783|gb|EFV90993.1| peptide deformylase [Dietzia cinnamea P4]
          Length = 184

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +F DP+LR  + P+   +  +   + ++++ +   +G GLAA QIG+  R+ V
Sbjct: 1   MPVHPVRLFGDPVLRTAADPVTSFDDRLARTVTDLMDTVAHEEGAGLAAPQIGLSTRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP+     ++ +   EGCLSIP      +R A +  R  D    
Sbjct: 61  YTCGGRRG-----HLVNPEWEAIGNETTEVNEGCLSIPGVSMPTERFARVRARGFDMKGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                A+G+LA  +QHE+DHL+G+LF+  L+  +R     ++ 
Sbjct: 116 PVSFEAEGILARAVQHEIDHLDGVLFLQRLTPERRRAAMAEIR 158


>gi|88704771|ref|ZP_01102484.1| Peptide deformylase [Congregibacter litoralis KT71]
 gi|88701092|gb|EAQ98198.1| Peptide deformylase [Congregibacter litoralis KT71]
          Length = 169

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR  S  + + +  +   ++++ E +  +  IGL+A Q G+  R++V
Sbjct: 1   MAILDIIEVPDERLREHSEAVSRFDEALQQQVNDLFETLGHSGAIGLSAPQTGIFKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + D               I         +E CLS+P    +V R   + +R  D + +
Sbjct: 61  VHVPDDDFGAR---VYINPEILKRSKSRYVEESCLSVPGIEGNVVRCIRVKLRAQDIHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                 D L A C+QHE+DHL+GILF D LS  K+  + 
Sbjct: 118 LCEFDVDDLHAVCVQHEVDHLDGILFTDRLSWFKKLRLR 156


>gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
 gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
          Length = 159

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM 73
           ++++ PI  ++ ++  L D+ML  MY   GIGLAA QIGVL RL+V+D  ++      P+
Sbjct: 2   KKIATPIVDLSDELRVLADDMLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRPV 61

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
              NP+I   SD+ SVY EGCLSIP+  A+V R A ++VR+M  +        DGL ATC
Sbjct: 62  AMFNPEITASSDELSVYDEGCLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETFDGLWATC 121

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +QHE+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 122 VQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 156


>gi|297621379|ref|YP_003709516.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044]
 gi|297376680|gb|ADI38510.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044]
          Length = 174

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  L  + DP LR+  +P+E+IN++I  L++NM+E +   +GIGLAA QI    RL + 
Sbjct: 1   MKLELAYYGDPFLRKKCKPVEEINNEIRELVENMVETLVEYNGIGLAAPQIKQDLRLFIT 60

Query: 62  DLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +          +   +VFINP+I+++S++    QEGCLSIP    +V R   I ++  D
Sbjct: 61  AVPKELPNGDWEQGELIVFINPEIVSYSEETEDRQEGCLSIPKLYGNVNRPVRIVIKATD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                     +GL A C  HE DH+NG+L+ID +   +R ++  K+ ++ +
Sbjct: 121 MEGNVFERKFEGLQARCCLHENDHINGVLYIDRIRGKERKLLEPKLREIKK 171


>gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259]
 gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259]
          Length = 185

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V++ IE     +  LI++M E M  +DG+GLAA QIG   R++VI
Sbjct: 1   MILPIYTYGQPVLRKVAQDIEADFPGLEQLIEDMYETMDKSDGVGLAAPQIGKAIRVIVI 60

Query: 62  ------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +                 I     + S  +EGCLS+P     VKR   I V+Y 
Sbjct: 61  SLDVLKEDFPEYAGFRHAYINPHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQYR 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +    + +G LA  +QHE+DHL G +F D +S L++ M+  K++ + + +
Sbjct: 121 DENFEPHDEWVEGYLARVMQHEIDHLEGHVFTDRISPLRKQMVKNKLNAIRKGK 174


>gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 184

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E M   +G+GLAA QIG+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPGLKELIANMFETMDHAEGVGLAAPQIGLPIRVVVV 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +INP I+  S +    +EGCLS+P     VKR   I V YMD
Sbjct: 61  DLDVLSEDYPEYKNFRKAYINPHILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENMVEHDEVVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
          Length = 168

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+ ++ + KI+     +I +M + MY+  GIGLAA Q+ +  +++V
Sbjct: 1   MSILKILHYPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D        +     II          EGCLSIP  +  + RS  I VR ++ +  
Sbjct: 61  I---DLYQNITQRLVFINPIIIKKIGIIHTVEGCLSIPKIKESIPRSKQIIVRSLNQDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I A  LL+ C+QHE+DHL G LFID+LS LK   I KK+ K  +L
Sbjct: 118 IFEITATDLLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQKWTKL 165


>gi|302346308|ref|YP_003814606.1| peptide deformylase [Prevotella melaninogenica ATCC 25845]
 gi|302150701|gb|ADK96962.1| peptide deformylase [Prevotella melaninogenica ATCC 25845]
          Length = 186

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VV+
Sbjct: 1   MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60

Query: 62  DL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL                      +     +    +EGCLS+P     V R+  + V++ 
Sbjct: 61  DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGVHESVTRAKRVYVKWY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL G +F D LS  ++ MIT K+  L+Q +
Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMITSKLKALLQGK 174


>gi|254510887|ref|ZP_05122954.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221534598|gb|EEE37586.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 164

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  DI  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MSVRTCLPWPDKRLRTKAGDVTEITDDIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      +       NP+I+  S +   ++E   ++P   A VKR   +TV++++   Q
Sbjct: 61  VDGSTERGKAV--RLANPEILHSSVELREHEEASPNLPGVSAKVKRPRAVTVKFLNEQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K 
Sbjct: 119 IDHRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKKQ 163


>gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301]
 gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 201

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ S+ I K++  I  L   ML+ MY+  GIGLAA QIG+   L+VID+
Sbjct: 31  LDIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDV 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  F    + Y+EGCLSIP    +V R + I +++ D   + + 
Sbjct: 91  NFEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGLLA C+QHE+DHLNGILF+D ++   +D + K++ K
Sbjct: 151 MKADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189


>gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644]
 gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644]
          Length = 200

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 78/158 (49%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P LR  S P+ + + ++   I  M  +MY  +GIGLAA Q+ + Y+  ++++  
Sbjct: 3   IVPYPHPALRYPSVPVTRFDDELRGQIQAMFALMYENEGIGLAANQVALPYQFFILNISG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  +           I      +  +EGCLS P     V R   I VR  D       + 
Sbjct: 63  NPEQTELEQVFINPQILRKQATAQDEEGCLSFPGLHGKVLRPRRIKVRAWDQYGVPFELE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           AD LLA  +QHE DHL+G LFID  S L R   +KK+ 
Sbjct: 123 ADELLARAIQHEWDHLHGRLFIDKFSTLGRINASKKLK 160


>gi|254796760|ref|YP_003081596.1| peptide deformylase [Neorickettsia risticii str. Illinois]
 gi|254590005|gb|ACT69367.1| peptide deformylase [Neorickettsia risticii str. Illinois]
          Length = 205

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 13/170 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LVI PDPIL +VS  +  ++ +    +D+MLE MY   GIGLAAVQ+GVL R++V
Sbjct: 21  MALLKLVIEPDPILHKVSGNVVGVSDEKREFLDDMLETMYHYTGIGLAAVQVGVLERIIV 80

Query: 61  IDLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +D+       +             P   +NP+II FS +     EGCLS+P+   ++ R 
Sbjct: 81  VDVPPDKEWHSSPLNHVGYESSGGPYYLVNPEIIEFSRNLVSADEGCLSLPEQNYEIVRP 140

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             + V+Y++ N +  ++ A+G LA C+QHE+DHL+G L++ HLS+LK D+
Sbjct: 141 DAVVVKYLNYNGEECLLKANGWLARCIQHEVDHLDGKLYVSHLSKLKYDL 190


>gi|308062113|gb|ADO04001.1| peptide deformylase [Helicobacter pylori Cuz20]
          Length = 175

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +DNM E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDNMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601]
 gi|158513947|sp|A2BNK7|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           AS9601]
          Length = 201

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ S+ I K++  I  L   ML+ MY+  GIGLAA QIG+   L+VID+
Sbjct: 31  LDIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDV 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  F    + Y+EGCLSIP    +V R + I +++ D   + + 
Sbjct: 91  NFEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGLLA C+QHE+DHLNGILF+D ++   +D + K++ K
Sbjct: 151 MKADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189


>gi|254465693|ref|ZP_05079104.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206686601|gb|EDZ47083.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 165

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  ++  + ++M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRTCLPWPDKRLRTKAEEVTEITDEVREIWNDMVDTMEAMPGVGLAANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S +   + E   ++P   A +KR   +TVRY++    
Sbjct: 61  VDGSAERGRAVK--LANPEILHASIELREHDEASPNLPGVSAKIKRPRAVTVRYLNEQGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  KL
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLIRKAKKL 163


>gi|188527363|ref|YP_001910050.1| peptide deformylase [Helicobacter pylori Shi470]
 gi|238691921|sp|B2UT38|DEF_HELPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188143603|gb|ACD48020.1| peptide deformylase [Helicobacter pylori Shi470]
          Length = 175

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ I   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008354|sp|Q8K975|DEF_BUCAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 167

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 3/156 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EKI  +I  + +NM++ MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLKILHYPDQRLRLIAKPVEKITKEIYKITNNMIDTMYQEEGIGLAATQVNIQLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I      H     + +    I         +EGCLSIP+YRA V R  +I ++ ++ N  
Sbjct: 61  IH---KIHAIEKNLILINPKIIEKKGSISIEEGCLSIPEYRAFVPRFNYIKIQAINLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              I AD +L+ C+QHE+DHLNG LFID+LS LKR+
Sbjct: 118 TVEIEADSILSICIQHEIDHLNGKLFIDYLSELKRE 153


>gi|307722030|ref|YP_003893170.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306980123|gb|ADN10158.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 174

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +V +PD  LR+ S  +++ ++ +  L+D M  +M +T+GIGLAA+Q+    R +++
Sbjct: 1   MKLNIVEYPDKTLRKKSCEVKEFDASLHKLLDAMNPLMINTNGIGLAAIQVAYPIRALIL 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ D    + P   +     ++T     + YQEGCLS+P +  D+KR   + + Y D   
Sbjct: 61  NVPDEDGEQPPENLLEIINPVMTHKSGETTYQEGCLSVPQFYEDIKRYDNVVINYQDRYG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + + ADGLLA  +QHE+DHL GILFID LS  +R    K+  ++ + +
Sbjct: 121 NTKTLDADGLLAIAIQHEMDHLEGILFIDKLSYARRKKFEKEYKRMQKEK 170


>gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
 gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
          Length = 214

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 29  MVLPIYTYGQPVLRKVAADIPLDYPDLQELIRNMFETNTASDGVGLAAPQIGKSIRVVVI 88

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       +     +    +EGCLS+P     V R+  I V+Y+
Sbjct: 89  DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL+G +F DHLS  +R MI+ K+  L+Q +
Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202


>gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
           arsenicoxydans]
          Length = 177

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 102/164 (62%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  L +V++ + ++++ I  L+++M + MY+ DGIGLAA Q+ V  R+++
Sbjct: 1   MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +    + +    +      +  +EGCLS+PD    VKR+A+I +R +D N +
Sbjct: 61  VDISEDRSQL---LVMINPEVIKMGGSAECEEGCLSVPDVYEKVKRAAWIRLRALDINGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + ADGL A C+QHELDHL G++F++HLS L +  I   ++K
Sbjct: 118 PFEVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161


>gi|302386506|ref|YP_003822328.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302197134|gb|ADL04705.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 163

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+  +P+++I   I  L+++M E MY ++G+GLAA Q+GVL ++VV
Sbjct: 1   MAIRKIRTIGDEILRKQCKPVKEITPRITELVEDMFETMYDSNGVGLAASQVGVLKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D        V INP+I+      +  +  CLS+P     V R  ++ ++  D + +
Sbjct: 61  IDVEDGNQ----YVLINPEILETRGSQTGPEG-CLSVPGKSGTVTRPEYVRIKAYDASME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA  + HE DHLNG L++D + 
Sbjct: 116 PYELEGEGLLARAICHECDHLNGDLYVDKVE 146


>gi|229489380|ref|ZP_04383243.1| polypeptide deformylase [Rhodococcus erythropolis SK121]
 gi|229323477|gb|EEN89235.1| polypeptide deformylase [Rhodococcus erythropolis SK121]
          Length = 212

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P++ +  P+L   +RP+ +  SD+ +L+ +M     +  G GLAA QIGV   + + 
Sbjct: 35  TAQPIIRWGTPVLHTPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 94

Query: 62  DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    +   V  NP              Y EGCLS+P    D+ R  F T R  D  
Sbjct: 95  DCTDEVGTQRTGVVCNPVVDLPEGVDRQLVDYCEGCLSLPGAYTDLARPDFSTCRGNDQY 154

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                I A G L  C QHE DH+NGI+F D L   KR  + +
Sbjct: 155 GNPIEITAGGTLGRCFQHEADHINGIVFGDRLPTRKRKQLYR 196


>gi|226305513|ref|YP_002765473.1| peptide deformylase [Rhodococcus erythropolis PR4]
 gi|226184630|dbj|BAH32734.1| peptide deformylase [Rhodococcus erythropolis PR4]
          Length = 188

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P++ +  P+L   +RP+ +  SD+ +L+ +M     +  G GLAA QIGV   + + 
Sbjct: 11  TAQPIIRWGTPVLHAPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 70

Query: 62  DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    +   V  NP                EGCLS+P    D+ R  F T R  D  
Sbjct: 71  DCTDEVGTQRTGVVCNPVVDLPEAVDRQLVDDCEGCLSLPGAYTDLARPDFSTCRGNDQY 130

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                I A G L  C QHE DH+NGI+F D L   KR  + +
Sbjct: 131 GNPIEITAGGTLGRCFQHETDHINGIVFGDRLPTRKRKQLYR 172


>gi|46199964|ref|YP_005631.1| polypeptide deformylase, fms protein-like protein [Thermus
           thermophilus HB27]
 gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8]
 gi|1169265|sp|P43522|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81678630|sp|Q5SLH2|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81699227|sp|Q72H33|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus]
 gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus
           thermophilus HB27]
 gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8]
          Length = 192

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V 
Sbjct: 1   MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59

Query: 62  DLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                                  V  NP I          +        Y  +V R+  I
Sbjct: 60  VEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEVPRAERI 119

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-----------MIT 159
            V Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+              
Sbjct: 120 RVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQ 179

Query: 160 KKMSKLVQL 168
           K+   L++ 
Sbjct: 180 KEARALLKE 188


>gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428]
 gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428]
          Length = 187

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 14/181 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL--- 58
           +   +V + +P+LR   R ++ ++  I  L  +MLE M + +G+GLAA QIGV  ++   
Sbjct: 1   MILEIVKYGNPVLREKGREVKDVDEKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVI 60

Query: 59  -----------VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
                      + I+ ++    ++  + +   ++ FS++     EGCLS PD  A++ RS
Sbjct: 61  DVAGIEDRPSAMWINDKEVPIEEHMPLVLLNPVLKFSEEKESGNEGCLSFPDITAEITRS 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + +       + +     A GLLA  LQHE DHL+G+LFID ++   +  I+ K+ +L +
Sbjct: 121 SGVQCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAATKAGISGKLKRLQK 180

Query: 168 L 168
            
Sbjct: 181 E 181


>gi|115379822|ref|ZP_01466890.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310817741|ref|YP_003950099.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115363181|gb|EAU62348.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309390813|gb|ADO68272.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 168

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 5/168 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+P  +L   ++P+      +  L+  M E M    GIG+AA Q+GV  R+ ++
Sbjct: 1   MARDIVIWPHKVLTSATQPVMDFGPALEKLLAEMAESMAEAKGIGIAANQVGVSLRVALV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +D    +     +  +    +      +EGCLS+P+    V R   + VRY D   Q 
Sbjct: 61  GREDGTFFEIVNPQLLERSGKVTL-----EEGCLSVPEEWEKVPRFEKVKVRYQDKAGQW 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               A+G LA   QHE+DHL+G +F+DHLS LKR +I ++M+KL + +
Sbjct: 116 HETEAEGRLAHVFQHEIDHLDGHVFVDHLSNLKRTLIRERMNKLQKSQ 163


>gi|85700133|gb|ABC74516.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSVLKRKKFEKELKELQKKQ 171


>gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5]
 gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5]
          Length = 164

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L + ++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D          +    I  S+      EGCLSIP +  DV+R+  +TV+ +D    
Sbjct: 61  IDAGDEHGLIK----MINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHL 150
             +I   GLLA   QHE+DHLNG+LF    D +
Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|294673344|ref|YP_003573960.1| peptide deformylase [Prevotella ruminicola 23]
 gi|294473242|gb|ADE82631.1| peptide deformylase [Prevotella ruminicola 23]
          Length = 186

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ IF  P+LR+V+  I      + +LI +M E +  ++GIGLAA QIG   RLVVI
Sbjct: 1   MILPIYIFGQPVLRKVAEDITPDYPQLKDLIGDMWETLAESEGIGLAAPQIGKPIRLVVI 60

Query: 62  DLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL               +      +     +  V +EGCLSIP     V R   I V + 
Sbjct: 61  DLDVLSDDLPEYKGFKQVFINAHIVEYDESNTDVSEEGCLSIPAIHEKVTRPTRIHVEWD 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +H   + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  L Q R
Sbjct: 121 DENFEHHDEWVEGYLARVMQHEFDHLDGKMFVDRISPLRKQLIKSKLRALTQGR 174


>gi|261837976|gb|ACX97742.1| polypeptide deformylase [Helicobacter pylori 51]
 gi|317177377|dbj|BAJ55166.1| peptide deformylase [Helicobacter pylori F16]
 gi|317180556|dbj|BAJ58342.1| peptide deformylase [Helicobacter pylori F32]
          Length = 175

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|182677516|ref|YP_001831662.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633399|gb|ACB94173.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 165

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 4/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FPDP L   ++ +E  +  +  L D+++E +++  GIG+ A  IGV  RLV 
Sbjct: 1   MAVRPVIRFPDPRLSMAAQKVEHFDETLRTLADDLVESLHAAHGIGITAPHIGVPARLVA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L  +  R      +NP+II  SD    +QEG +S+P     V+R A I VRY D +  
Sbjct: 61  LELTPNQTRLY----VNPEIIWSSDTKIRHQEGSVSMPGVTEIVERCAEIHVRYQDLDGS 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             I  ADG LA C QHE+D L+G+ +I  LSRLKR+ + K+  KL   R
Sbjct: 117 VHIEKADGFLAICHQHEIDQLDGLFWIQRLSRLKRERVIKRYEKLASDR 165


>gi|91216549|ref|ZP_01253515.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
 gi|91185343|gb|EAS71720.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
          Length = 196

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+L++ +  I K +  I  L++NM E MY+  G+GLAA QIG+  RL ++
Sbjct: 1   MILPIAAYGSPVLKKKAEDISKDHPKIDELLENMFETMYNASGVGLAAPQIGLSIRLFIV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +  +  +               VFINP+II  +     + EGCLSIPD   D+ R   
Sbjct: 61  DAKPFSEDESLSELEKNELEAFKRVFINPQIIEENGIEWDFNEGCLSIPDVHEDIFRKPE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ITV Y+D N   Q     GL A  +QHE DH+ G+LF D +S LK+ +I  K++ + + +
Sbjct: 121 ITVEYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRISSLKKRLIKNKLTNISKGK 180


>gi|300858540|ref|YP_003783523.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685994|gb|ADK28916.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
          Length = 169

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+L   +  +   + ++ NL+ +MLE M +  G+GLAA Q+GV  R+  
Sbjct: 1   MTIRDIRFFGDPVLTMRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP      +D  +  EGCLSIPD + D  R   + V   D   +
Sbjct: 60  VYDCSHIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              + A GL++ C+QHE DHL+G+LF+  L +  R    
Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAM 158


>gi|207091735|ref|ZP_03239522.1| peptide deformylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 175

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELSKN 170


>gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
           43183]
 gi|167698803|gb|EDS15382.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
           43183]
          Length = 184

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDHLS L+R MI  K++ +++ +
Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRRQMIKGKLNAMLKGK 173


>gi|163738221|ref|ZP_02145637.1| peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|161388837|gb|EDQ13190.1| peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 165

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  + + L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S     ++E   ++P   A +KR   +TVRYMD    
Sbjct: 61  VDGSSERGRAV--RLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  KL 
Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDKLSKVKRDMLIRKAKKLS 164


>gi|307322251|ref|ZP_07601618.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306892102|gb|EFN22921.1| peptide deformylase [Sinorhizobium meliloti AK83]
          Length = 172

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP P+L   +  I +    +  L D++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFGGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++        P  F+NP+I+  S + + + EG +S+P    +V+R   + + +   + +
Sbjct: 61  IEVDPQMG---PRSFVNPEIVWQSSETARHSEGSVSMPGVAEEVERPVRVRISFQTLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   A+GL+A CLQHE+D LNGI +I  LSRLKR+   K+  K  +
Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNR 164


>gi|85700129|gb|ABC74514.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|325068970|ref|ZP_08127643.1| peptide deformylase [Actinomyces oris K20]
 gi|326773171|ref|ZP_08232454.1| peptide deformylase [Actinomyces viscosus C505]
 gi|326636401|gb|EGE37304.1| peptide deformylase [Actinomyces viscosus C505]
          Length = 163

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR     I  I+  +  L++++LE +      GLAA QIG+  R   
Sbjct: 1   MAYRDIRIIGDPILRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          +     +    D++    EGCLS+P      +R+ +     +D + +
Sbjct: 61  WNIDGEIG----YILNPKIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE DHL G L++D L R  R    K++ 
Sbjct: 117 EVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAKAMKELR 159


>gi|289209646|ref|YP_003461712.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945277|gb|ADC72976.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 178

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++    P LRRV  P+ + +     +  L+D++++ M++++G+GLAA QIGV +R
Sbjct: 1   MSVRRILRMGHPDLRRVCDPVPESDFDSPGLHALVDDLVDTMHASEGLGLAAAQIGVPHR 60

Query: 58  LVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           + VI++Q    R         +  +NP +         Y EGCLS+P  R +V R   I 
Sbjct: 61  VAVIEIQPGNTRYPGAVPTGRLALVNPVVTVLDPTPQRYWEGCLSVPGLRGEVARPRHIA 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V Y + +   + +  +G LAT  QHE+DHL+G LFID ++   R     +  +
Sbjct: 121 VDYHEPDGTPRHLEPEGFLATVFQHEIDHLDGTLFIDRVTDTTRLAFLDEYRE 173


>gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001]
 gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001]
          Length = 183

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 88/150 (58%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR  +R I K++  +  L  +ML  MY+  GIGLAA Q+GV  +L+VIDL
Sbjct: 13  LEIHTLGDAVLRTPARRISKVDEAVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDL 72

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   PMV INP+I +F      Y+EGCLSIP    +V R   + V + D   + Q 
Sbjct: 73  DPDNPATPPMVLINPEIRSFGGSLDTYEEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQK 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  DGLLA C+QHE+DHLNG+LF+D ++  
Sbjct: 133 LRTDGLLARCIQHEMDHLNGVLFVDRVTDE 162


>gi|308182949|ref|YP_003927076.1| peptide deformylase [Helicobacter pylori PeCan4]
 gi|308065134|gb|ADO07026.1| peptide deformylase [Helicobacter pylori PeCan4]
          Length = 175

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIIYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|224283170|ref|ZP_03646492.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064448|ref|YP_003971173.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313140319|ref|ZP_07802512.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171]
 gi|310866767|gb|ADP36136.1| Def Peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313132829|gb|EFR50446.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171]
          Length = 162

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I +I   +  L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRTVPDPVLRTPCETIREITPSVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                ++          EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNINGKIGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++   GL+   LQHE DHL+G +++D L + +R    + M +  
Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160


>gi|291301355|ref|YP_003512633.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290570575|gb|ADD43540.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 173

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V     +L R  R +   + ++  L+D+M   MY+ +G+GLAA QIGV  R+ VI
Sbjct: 8   TVHDIVYHGTEVLHRRCRTVTDFDDELARLVDDMFASMYAANGVGLAANQIGVDARVFVI 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D +D    +     +NP +        +    EGCLS+P   ADV R+   TV   D   
Sbjct: 68  DCRDDDGGRLYGHIVNPTLREEPPPRELNVGPEGCLSVPGQYADVARTQTATVDGFDKTG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +   + + G  A CLQHE DHLNGI+++D L +  R  +  +
Sbjct: 128 KPITLTSTGEAARCLQHETDHLNGIVYVDKLPKKIRKRLLAE 169


>gi|49089809|gb|AAT51863.1| peptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122]
 gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122]
          Length = 187

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 88/156 (56%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++ +PDP LR+V    +  +  +  L   M + MY+ +G GLAA Q+GVL RL+VID 
Sbjct: 11  LEVLAYPDPTLRQVCEDCDPADKSLRKLARRMAKTMYADNGCGLAAPQVGVLKRLIVIDC 70

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              +  KNP+  +NP +I       V +EGCLS+P     ++R A+  VRY D N +  I
Sbjct: 71  DQDSGAKNPITLLNPTVIETRGPEVVEEEGCLSVPGITVPIRRPAYAIVRYTDLNGEDWI 130

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           I  DGLLA CLQHE+DHLNGI   +     +R    
Sbjct: 131 IEGDGLLARCLQHEIDHLNGITLFESCDLNERIKAM 166


>gi|183601693|ref|ZP_02963063.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683774|ref|YP_002470157.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190808|ref|YP_002968202.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196214|ref|YP_002969769.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219299|gb|EDT89940.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621424|gb|ACL29581.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249200|gb|ACS46140.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250768|gb|ACS47707.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793797|gb|ADG33332.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 160

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI +I   + NL+ ++L+ +      G++A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V    +            EGCLS+P      KR+ +  VR MD +  
Sbjct: 61  YNIDGKIGYVLNPVLEETRGE------QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++  DG++   LQHE DHL+G L+ID L +
Sbjct: 115 EIVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 146


>gi|154487371|ref|ZP_02028778.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis
           L2-32]
 gi|154083889|gb|EDN82934.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis
           L2-32]
          Length = 161

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V                 EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKIGYVLNPVLEETSGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    + M    +
Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRTHRK 161


>gi|239917470|ref|YP_002957028.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|281414039|ref|ZP_06245781.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|239838677|gb|ACS30474.1| peptide deformylase [Micrococcus luteus NCTC 2665]
          Length = 213

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 8/175 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   +P+ ++ +P+L R +  +E I+ +I  LI++M     +  G+GLAA Q+GV  R+ 
Sbjct: 1   MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAASQVGVGLRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------RADVKRSAFITVR 113
                D     N    INP +                             ++R   + + 
Sbjct: 61  TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               + +     A+G  A  +QHE DHLNG L+++ L   K     K+  +  +L
Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEG-KWQRRWKRAQRAERL 174


>gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10]
 gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10]
          Length = 164

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L + ++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D          +    I  S+      EGCLSIP +  DV+R+  +TV+ +D    
Sbjct: 61  IDAGDEHGLIK----MINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHL 150
             +I   GLLA   QHE+DHLNG+LF    D +
Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
          Length = 188

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 6/175 (3%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  P+ ++  P+LR +S  I     ++  LI +M + MY +DG+GLAA QIG   RL 
Sbjct: 1   MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60

Query: 60  VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VID    A           V IN  + + S++     EGCLS+P     V R   I V Y
Sbjct: 61  VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPESIVVDY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           M+   + Q +   G  A  +QHE DHL+G LF+DH+S +++ MI KK+  + + R
Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175


>gi|85700137|gb|ABC74518.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 103/171 (60%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+MLE M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMLETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|108563203|ref|YP_627519.1| peptide deformylase [Helicobacter pylori HPAG1]
 gi|123373755|sp|Q1CT77|DEF_HELPH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|107836976|gb|ABF84845.1| polypeptide deformylase [Helicobacter pylori HPAG1]
          Length = 174

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171


>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b)
 gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b)
 gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
 gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
          Length = 193

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 91/166 (54%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +  
Sbjct: 2   EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPA 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I
Sbjct: 62  GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 167


>gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii]
          Length = 236

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +VI+P+ ILR+ S  +   + ++ NLI  M + MY   GIGL+A Q+ +  R++V + 
Sbjct: 60  LKIVIYPNSILRQKSEEVIYFDDNLKNLIRRMFKAMYENKGIGLSAPQVNISKRIIVWNA 119

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +    KN  VFINP I+  S   +   EGCLS P+  A V+R A +++ Y D N    
Sbjct: 120 LYEKRDEKNERVFINPLIVQESAVKNKLIEGCLSFPNIEAKVERPAIVSISYYDINGNKH 179

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +    G+ A   QHE DHLNG+LFID +++ ++  I  K+++LV+ 
Sbjct: 180 LKILKGIHARVFQHEYDHLNGVLFIDRITQTEKQKIKGKLNELVRE 225


>gi|126738019|ref|ZP_01753740.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720516|gb|EBA17221.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 165

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  ++     ++++ M +  G+G+ A QIGV+ RL V
Sbjct: 1   MSVRPCLPWPDQRLRTAATEVVEITDEVRTTWQDLIDTMEAMPGVGMGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S     ++E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VDGSSERGRAV--RMANPEILHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  G+ AT +QH++DHL+G L+ D LS++KRDM+ KK  K  
Sbjct: 119 ITERDFVGIEATSVQHQIDHLDGKLYFDRLSKVKRDMLIKKSKKFS 164


>gi|310287535|ref|YP_003938793.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|309251471|gb|ADO53219.1| Peptide deformylase [Bifidobacterium bifidum S17]
          Length = 162

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I +I   +  L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRTVPDPVLRTPCETIREITPAVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                ++          EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNINGKIGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++   GL+   LQHE DHL+G +++D L + +R    + M +  
Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160


>gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deformylase [Helicobacter pylori]
          Length = 174

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|260574966|ref|ZP_05842968.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022971|gb|EEW26265.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 167

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  L+ V+ P+ +I  ++  +  +M+E M    G+GLAA QIGV+ RL V
Sbjct: 1   MTVRRCLPYPDRRLKTVAEPVAEITDEVRAIWADMVETMDDMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   +       NP+++  S     + EG  ++P   A + R   +TVR+++   Q
Sbjct: 61  VDCSETRGQAVL--MANPEVLHASGQMREHDEGSPNLPGVSAVISRPRAVTVRFLNAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +      L AT +QH++DHLNG L+IDHLS LKR M+  K  K
Sbjct: 119 VEERDFVNLWATSVQHQIDHLNGKLYIDHLSPLKRKMLIAKSQK 162


>gi|240113996|ref|ZP_04728486.1| peptide deformylase [Neisseria gonorrhoeae MS11]
 gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1]
 gi|240124639|ref|ZP_04737525.1| peptide deformylase [Neisseria gonorrhoeae SK-92-679]
 gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
 gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
 gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
 gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
 gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
 gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
          Length = 161

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV+DL +  
Sbjct: 2   QYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTEDR 61

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                       +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + AD
Sbjct: 62  SEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEAD 118

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           GLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 119 GLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 158


>gi|121998191|ref|YP_001002978.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121589596|gb|ABM62176.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 162

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP LR+ S P+E+ +  +  L+D+M+E M++   IGLAA Q+ V  R+VV
Sbjct: 1   MATLEILEHPDPRLRQPSAPVERFDQALCELVDDMIETMHARSAIGLAAPQVDVRQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
              +     +          IT S      +E CLS+P  +  V+R   ++VR  D   +
Sbjct: 61  CCTEPAQAPR----VFINPEITGSSLPGYIEESCLSVPGQQGLVRRPTRVSVRAQDTAGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                 + L A CL HE+DHL+G LFID L   KR  I
Sbjct: 117 RFHCKLENLDAVCLHHEIDHLDGTLFIDRLPFWKRLKI 154


>gi|116252298|ref|YP_768136.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256946|emb|CAK08040.1| putative peptide deformylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 164

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   +S +  L +++L  M +  G+G+ A  IGV  R+ V
Sbjct: 1   MPIRPILRYPHPGLKTVCAPVTVFDSSLTALAEDLLATMRAAPGVGITAAHIGVFSRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    + NP I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKADGVRL---YFNPHITWFSKETMDHTEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K  
Sbjct: 118 VHEDGAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 163


>gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608]
 gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608]
          Length = 186

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 1   MVLPIYTYGQPVLRKVAEDIPLDYPDLPELIQNMFETNTASDGVGLAAPQIGKSVRVVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                       +     +    +EGCLS+P     V R+  I V+Y+
Sbjct: 61  DLDVLSDTFPEYKDFRHAFINGHILELDDSETETMEEGCLSLPGIHESVTRAKRIHVKYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D + +    + DG LA  +QHE DHL G +F D LS  +R MI+ K+  L+Q +
Sbjct: 121 DEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTDRLSAFRRQMISGKLKALLQGK 174


>gi|182440102|ref|YP_001827821.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 181

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 71/151 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L R    +      +  L+++M   MY+  G+GLAA QIGV  ++ V D
Sbjct: 13  VREMSLLGDPLLHRPCEDVTDFGPPLAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A   R     V  +    +  
Sbjct: 73  CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTDRFDHAVVEGLTMTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I   G  A CLQHE DHL G ++ D L+ L
Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYTDRLTGL 163


>gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
           17393]
 gi|189434622|gb|EDV03607.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
           17393]
          Length = 184

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M + +G+GLAA Q+G+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRKVAEDIAPDYPNLKELIANMFETMDNAEGVGLAAPQVGLPVRVVVV 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +INP I+  S +    +EGCLS+P     VKR   I V YMD
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINPHILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDMVEHDEIVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|237740379|ref|ZP_04570860.1| polypeptide deformylase [Fusobacterium sp. 2_1_31]
 gi|229422396|gb|EEO37443.1| polypeptide deformylase [Fusobacterium sp. 2_1_31]
          Length = 174

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + D +L+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ 
Sbjct: 1   MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYKTDGIGLAAPQVGVSKRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP I   +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VC----EDGTGKIRKLINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+ LLA  +QHE DHLNGILF++ +S + + +I KK++ + + 
Sbjct: 117 EAVEEIAEELLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165


>gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
 gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
          Length = 174

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + D IL+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ 
Sbjct: 1   MVFEIRKYGDDILKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP I   +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VC----DDGTGKIRKLINPIIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYINENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+ LLA  +QHE DHLNGILF++ +S + + +I KK++ + + 
Sbjct: 117 EAVEEIAEDLLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165


>gi|57168634|ref|ZP_00367766.1| polypeptide deformylase [Campylobacter coli RM2228]
 gi|305432738|ref|ZP_07401898.1| peptide deformylase [Campylobacter coli JV20]
 gi|57019915|gb|EAL56595.1| polypeptide deformylase [Campylobacter coli RM2228]
 gi|304444247|gb|EFM36900.1| peptide deformylase [Campylobacter coli JV20]
          Length = 175

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+++ + ++  L+D+M + M ++ G+GLAA+Q+ +  R +++
Sbjct: 1   MVRKIITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGVGLAAIQVDIPLRALIV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    +        INP+II   ++     EGCLS+PD+  +V+R   I ++Y D  
Sbjct: 61  NILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDFFEEVERYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              + + A G LA  +QHE DHLNG LFI+ +S LKR    K+
Sbjct: 121 GNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKFDKE 163


>gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 188

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 6/175 (3%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  P+ ++  P+LR +S  I     ++  LI +M + MY +DG+GLAA QIG   RL 
Sbjct: 1   MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60

Query: 60  VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VID    A           V IN  + + S++     EGCLS+P     V R   I V Y
Sbjct: 61  VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPKSIVVDY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           M+   + Q +   G  A  +QHE DHL+G LF+DH+S +++ MI KK+  + + R
Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175


>gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 185

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 9/177 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++   +LR V++PI +   +I  LIDNM E M + DGIGLAA QIG+  RL VI
Sbjct: 1   MILPVYLYGSGVLREVAKPITEDYPNIRELIDNMFETMRNADGIGLAAPQIGLSIRLFVI 60

Query: 62  DLQDH---------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           D+                   +FIN +I     D  +Y+EGCLSIP     V R   I +
Sbjct: 61  DISPLDTERDFPQLRDCPKQKIFINAEITERYGDTVIYEEGCLSIPKINEKVPRPDKIKI 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +Y+D   +      +G  A  +QHE DH++G +F+DH+S L++ +I  K++ +V+ +
Sbjct: 121 KYLDETFREHEDEFEGYFARVIQHECDHIDGKMFVDHISPLRKQLIKSKLADIVKRK 177


>gi|227496282|ref|ZP_03926578.1| peptide deformylase [Actinomyces urogenitalis DSM 15434]
 gi|226834207|gb|EEH66590.1| peptide deformylase [Actinomyces urogenitalis DSM 15434]
          Length = 163

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAYRDIRIIGDPVLRTQCEWITDIDDSVKQLVEDLLETVDEDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          +          D++    EGCLS+P      KR+ +     +D + +
Sbjct: 61  WNIDGEIG----YILNPRIDELNFDEYQDGDEGCLSVPGLWYPTKRAWYARATGIDLDGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+  C+QHE DHL G L++D L R  R    K + 
Sbjct: 117 EVVVEGEELMGRCIQHECDHLEGHLYLDRLDRKNRAKAMKDLR 159


>gi|288802833|ref|ZP_06408270.1| peptide deformylase [Prevotella melaninogenica D18]
 gi|288334650|gb|EFC73088.1| peptide deformylase [Prevotella melaninogenica D18]
          Length = 186

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VV+
Sbjct: 1   MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60

Query: 62  DL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL                      +     +    +EGCLS+P     V R+  I V++ 
Sbjct: 61  DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGIHESVTRAKRIYVKWY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL G +F D LS  ++ MI  K+  L+Q +
Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMINSKLKALLQGK 174


>gi|300871518|ref|YP_003786391.1| peptide deformylase [Brachyspira pilosicoli 95/1000]
 gi|300689219|gb|ADK31890.1| peptide deformylase [Brachyspira pilosicoli 95/1000]
          Length = 177

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+ D  L+  S  +E ++ +I+ LID+M E MY  +G+GLAAVQ+GVL R++VI
Sbjct: 1   MIRKLVIYGDDRLKEKSSYVENVDEEILTLIDDMFETMYKANGVGLAAVQVGVLKRVIVI 60

Query: 62  DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D      P      INP+II   +D  + +EGCLS P    +V R   I V+Y+D  
Sbjct: 61  SVPDFDDETKPDFKLALINPEIIWHGEDTEILEEGCLSFPKISDEVARYKEIKVKYIDTE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + QI+ A   +A  LQHE+DH NGI FID L   ++  + K + +L  
Sbjct: 121 NKEQILDAKDYIAKVLQHEIDHTNGITFIDRLESYQKRRLKKDLKELRN 169


>gi|149194678|ref|ZP_01871773.1| peptide deformylase [Caminibacter mediatlanticus TB-2]
 gi|149135101|gb|EDM23582.1| peptide deformylase [Caminibacter mediatlanticus TB-2]
          Length = 173

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 2/160 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P+ IL+++S+P+E+ +S++  L+D+M E M + +GIGLAA+Q+GV  R ++
Sbjct: 1   MAILDIVTYPNKILKQISKPVERFDSELHKLLDDMYETMIAKNGIGLAAIQVGVPIRALL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           IDL D   +++    I      F   D    Y EGCLS+PDY  +V+R   + V++ D  
Sbjct: 61  IDLGDEEGKQSKDTLIEVINPEFLEWDGSLKYNEGCLSVPDYFDEVERYKKVKVKFFDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            +  I+ A+ LL+   QHE DHL+G +FI+ L  +KR   
Sbjct: 121 GKEHIVDAEDLLSVAFQHETDHLDGHVFIERLDYIKRKKF 160


>gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus
           Thermophilus Hb8
 gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus
           Thermophilus Hb8
          Length = 192

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V 
Sbjct: 1   MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59

Query: 62  DLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                                  V  NP I          +        Y  +V R+  I
Sbjct: 60  VEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGXLSLPGLYSEEVPRAERI 119

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-----------MIT 159
            V Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+              
Sbjct: 120 RVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQ 179

Query: 160 KKMSKLVQL 168
           K+   L++ 
Sbjct: 180 KEARALLKE 188


>gi|323344260|ref|ZP_08084486.1| peptide deformylase [Prevotella oralis ATCC 33269]
 gi|323094989|gb|EFZ37564.1| peptide deformylase [Prevotella oralis ATCC 33269]
          Length = 187

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I     D+  LI +M E + ++DG+GLAA QIG   R+ VI
Sbjct: 1   MILPIYIYGQPVLRKVAKDITPDYPDLEELIKDMFETLTASDGVGLAAPQIGKSIRVAVI 60

Query: 62  DL-------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL        ++   +   +  +   I  +    + +EGCLSIP     V R + I V+Y
Sbjct: 61  DLDVLSGELPEYKDFRKAYINPHIIEIDDNSKKEIMEEGCLSIPGIHESVTRPSRIHVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           MD        + DG LA  +QHE DHL+G +F+D LS  ++ M+  K+  L+Q +
Sbjct: 121 MDTAFVQHDEWVDGYLARVMQHEFDHLDGTMFVDRLSPFRKQMVNSKLKALIQGK 175


>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
 gi|238689048|sp|B1XJP0|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
          Length = 187

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 8/171 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++ +I  L   ML+ MYS+ GIGLAA Q+GV  RL+VID 
Sbjct: 17  LELHYLGDKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDT 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I  F      ++EGCLSIP    DV R   I V Y D   + + 
Sbjct: 77  DPENPANAPLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKR 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-------SRLK-RDMITKKMSKLV 166
           I A GLL+  +QHE+DHL+G++F+D +       S+LK R    K + ++ 
Sbjct: 137 IKASGLLSRVIQHEIDHLDGVMFVDRVENEIALSSQLKQRGFALKSVQRIA 187


>gi|85375926|gb|ABC70185.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHREDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01]
 gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01]
          Length = 191

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 15/181 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ ++ DP+LR+ +RP++     +  L ++MLE M+   G+GLAA QIG+  R  V 
Sbjct: 1   MIYPIRLYGDPVLRKKARPVQDF-QGLKKLAEDMLETMFEARGVGLAAPQIGLSQRFFVA 59

Query: 61  --IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADVKRSAFIT 111
                +     +          +  +   +  +     +            +V R+  I 
Sbjct: 60  VEYADEPEGEERPLRDLARRIYVVANPVITHREGEVEGLEGCLSLPGLYAEEVPRAERIR 119

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK----KMSKLVQ 167
           V Y D   + + +  +G +A   QHE+DHL+GILF + L + KR+   +    +++++ +
Sbjct: 120 VEYQDEEGRPRALELEGYMARVFQHEIDHLDGILFFERLPKAKREAFLEENRAELARMQK 179

Query: 168 L 168
            
Sbjct: 180 E 180


>gi|57242491|ref|ZP_00370429.1| polypeptide deformylase [Campylobacter upsaliensis RM3195]
 gi|57016776|gb|EAL53559.1| polypeptide deformylase [Campylobacter upsaliensis RM3195]
          Length = 174

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ ++
Sbjct: 1   MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRIFIV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    +        INP I   +D+  V  EGCLS+PD+  +V+R+  IT++Y D  
Sbjct: 61  NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRNRKITLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+
Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKE 163


>gi|86738737|ref|YP_479137.1| peptide deformylase [Frankia sp. CcI3]
 gi|86565599|gb|ABD09408.1| peptide deformylase [Frankia sp. CcI3]
          Length = 230

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             + + +  +P+L R  + I +   +++  LID+M   MY  +G+GLAA QI V   + V
Sbjct: 46  SIRRITVVGEPVLHRPCKKITEFGTAELAALIDDMFTTMYGAEGVGLAANQIDVDAAVFV 105

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D  D    ++    +NP +              EGCLS+P    +V R     VR  D 
Sbjct: 106 YDCTDEDGVRHVGHLVNPVLEEAPPAERRLVKGDEGCLSVPGAYMEVARLEHAAVRGQDQ 165

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +     +   G  A CLQHE DHL G L++D LS   R    ++M +
Sbjct: 166 HGAPLRLEGTGYFARCLQHETDHLYGSLYLDRLSSRGRKKALREMEE 212


>gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
 gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
          Length = 184

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +          ++     +INP I+    +     EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLAEDFPEYKDFRRAYINPHILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +      + +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLEGTMFIDHLSALRKQMIKGKLNAMLKGK 173


>gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 179

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+ + +SD +  L+ +ML+ M + +G GLAA QIGV  +LV
Sbjct: 1   MTVRDILKMGDPRLLRVAQPVTEFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +                 P V  NP I    D+     EGCLS+P  R  V R + I   
Sbjct: 61  IFGGNERNPRYPDRPIVPPTVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRWSRIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DH+ G L+   +   
Sbjct: 121 GFDQYGDAIDRTVDGFHARVVQHECDHVWGKLYPMRVRDF 160


>gi|148977715|ref|ZP_01814276.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145963083|gb|EDK28352.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 170

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  +P++  PD  LR   + ++ + S +  LID+ML+ +Y   +GIGLAA Q+G    ++
Sbjct: 1   MAIRPIIEVPDDRLRVTYQIVDDV-STVQTLIDDMLDTLYDTDNGIGLAAAQVGHSEAVL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+ ++  +      +    I   +     +EGCLS+P   A V+R   + V+ ++   
Sbjct: 60  IIDISENRDQPL---IMINPQIIEHEGLIDSEEGCLSVPGVYAKVQRHQRVKVQALNRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I  D  LA  +QHE+DHL+G +FID+LS LKR M  KK+ K  + +
Sbjct: 117 EAFTIEDDDYLAIVMQHEIDHLHGKIFIDYLSPLKRKMAMKKIKKFQRAK 166


>gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
 gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20]
 gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
 gi|156860617|gb|EDO54048.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
 gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20]
 gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
          Length = 185

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M + +G+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDIAPDYPNLKELIENMFETMDNAEGVGLAAPQIGLPIRVVTI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +          ++     +IN  I+  S +     EGCLS+P     VKR   I V+Y+D
Sbjct: 61  NLDVLSDDLPEYKDFRKAYINAHILEVSGEEVSMDEGCLSLPGIHESVKRGNKIRVQYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +      +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENLEPHDEIIEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf
 gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf
 gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.5
 gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.5
 gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph6.5
 gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph6.5
 gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.0
 gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.0
 gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans(Lipdf) At Ph8.0
 gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans(Lipdf) At Ph8.0
          Length = 177

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + ++   DPILR++S P+ +      +   LI +M + M   +G+GLAA QIG+L ++
Sbjct: 1   SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 60

Query: 59  VVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           VV+  +D+            + +NP I   + D S + EGCLS+P  R  V+R   I ++
Sbjct: 61  VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +MD          DG  A   QHE DHL GIL++D L   K
Sbjct: 121 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161


>gi|317014203|gb|ADU81639.1| peptide deformylase [Helicobacter pylori Gambia94/24]
          Length = 174

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSIMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171


>gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
          Length = 171

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +V FP+ IL+R + P++ I+++I  +I  M E MY  DGIGLAA Q+ +   ++VID
Sbjct: 1   MLEIVTFPNEILKRKTNPVKSIDAEIKEIIKEMKETMYKNDGIGLAANQVNIPLSIMVID 60

Query: 63  LQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                  ++     +    +   +    ++EGCLS P  + +V R+  IT++ ++   + 
Sbjct: 61  TTSREDDQEKFKDVLINPTVLAKEGEIKFKEGCLSFPGLQVEVIRAKEITIKAINECEEE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            I+   GL A   QHE DHLNGI F+D LS +K+ +  +K  K+++ +
Sbjct: 121 VILNLSGLPAIVFQHEFDHLNGITFLDRLSGIKKRLALEKYQKMLKEK 168


>gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 89/165 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIGVFDQNLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP I  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGEEIVLVNPIIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247


>gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 205

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 71/149 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L R    +      +  LI++M   MY+  G+GLAA QIGV  ++ V D
Sbjct: 37  VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 96

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V  +    +  
Sbjct: 97  CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 156

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            I   G  A CLQHE DHL G ++ D L+
Sbjct: 157 RIAGTGWFARCLQHECDHLEGTVYPDRLT 185


>gi|239939651|ref|ZP_04691588.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
          Length = 181

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 71/149 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L R    +      +  LI++M   MY+  G+GLAA QIGV  ++ V D
Sbjct: 13  VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V  +    +  
Sbjct: 73  CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            I   G  A CLQHE DHL G ++ D L+
Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYPDRLT 161


>gi|329924705|ref|ZP_08279720.1| peptide deformylase [Paenibacillus sp. HGF5]
 gi|328940539|gb|EGG36861.1| peptide deformylase [Paenibacillus sp. HGF5]
          Length = 172

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59
           M  KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG  GLAA QIG+L RL+
Sbjct: 1   MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +          +            +  E CLS P Y   VKR+  +TV+ ++   
Sbjct: 61  VMDCGEGLIELINPEIVEMDGE------QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  +  LA C+QHE+DHLNGILF+DH+
Sbjct: 115 ETVILKGEDYLARCMQHEIDHLNGILFVDHV 145


>gi|323356569|ref|YP_004222965.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323272940|dbj|BAJ73085.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 163

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  S PIE I+  I  L+ ++L+ +      G+AA QIGV  R   
Sbjct: 1   MTVRPIRLFGDPVLRAPSAPIETIDDGIHALVRDLLDTVEPPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++    +  +  EGCLS+P    +  R  +  V  +D +  
Sbjct: 61  YNIDGDIG-----YVLNPVLVETRGEPQLVGEGCLSVPGLWHEATRYPWAKVVGIDLDGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  +GLLA  LQHE DHL+G+L++  L    R    +++ +
Sbjct: 116 EVVLEGEGLLAQALQHETDHLDGMLYLSRLPADTRREAMRQIRE 159


>gi|254881558|ref|ZP_05254268.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
 gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
          Length = 184

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                   + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++ +
Sbjct: 121 EELNEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173


>gi|261839392|gb|ACX99157.1| peptide deformylase [Helicobacter pylori 52]
          Length = 175

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ I   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|261409931|ref|YP_003246172.1| peptide deformylase [Paenibacillus sp. Y412MC10]
 gi|261286394|gb|ACX68365.1| peptide deformylase [Paenibacillus sp. Y412MC10]
          Length = 172

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59
           M  KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG  GLAA QIG+L RL+
Sbjct: 1   MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +          +            +  E CLS P Y   VKR+  +TV+ ++   
Sbjct: 61  VMDCGEGLIELINPEIVEMDGE------QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q  I+  +  LA C+QHE+DHLNGILF+DH+
Sbjct: 115 QTVILKGEDYLARCMQHEIDHLNGILFVDHV 145


>gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 177

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E+ +  ++  ++ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPEAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKLDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056]
 gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056]
          Length = 184

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 EDLVEHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNAMLKGK 173


>gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1]
 gi|256027377|ref|ZP_05441211.1| polypeptide deformylase [Fusobacterium sp. D11]
 gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33]
 gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11]
 gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1]
 gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33]
 gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11]
          Length = 174

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA Q+GV  R+ 
Sbjct: 1   MVYEIKRYGEEVLKQIAKEVEFNEINDEFRKFLDDMVETMYETDGVGLAAPQVGVSKRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VC----DDGNGVVRKVINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILF++ +S + + +I KK++ + + 
Sbjct: 117 EEVEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANIKKE 165


>gi|217032886|ref|ZP_03438363.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128]
 gi|298736496|ref|YP_003729022.1| peptide deformylase [Helicobacter pylori B8]
 gi|216945380|gb|EEC24048.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128]
 gi|298355686|emb|CBI66558.1| peptide deformylase [Helicobacter pylori B8]
          Length = 174

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKWIETGGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
 gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
          Length = 186

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D ILR+ ++P++ I+S I  LI +M E M + +GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINIYSDDILRQKAKPLKGIDSTIEALIASMFESMRNAEGIGLAAPQVGHSVRLLVL 60

Query: 62  D--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D+   + PMV INP I+  S    + +EGCLSIP    DV+R A I+++Y D + 
Sbjct: 61  DLSCIDNYANEKPMVVINPHILAVSGCNVM-EEGCLSIPGVNGDVERPAVISLKYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             +     G+LA  LQHE+DHL+G LF+D + +  R  I K+++ + 
Sbjct: 120 LERTREFSGMLARALQHEIDHLDGTLFVDRMEKRSRKKIQKELTDIA 166


>gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
 gi|123727935|sp|Q31DB4|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
          Length = 201

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 3/160 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ S+ I K++  I  L   M++ MY+  GIGLAA QIG+   L+VID+
Sbjct: 31  LEIYKLGDDVLRQNSKRITKVDESIRKLTREMIQSMYAAKGIGLAAPQIGINKELLVIDV 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + 
Sbjct: 91  NFEDSAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITK 160
           + ADGLLA C+QHE+DHLNGILF+D +     LK+++I +
Sbjct: 151 MKADGLLARCIQHEMDHLNGILFVDRVTSKDDLKKELIKE 190


>gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264]
 gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264]
 gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264]
          Length = 177

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVESFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301]
 gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942]
 gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301]
 gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942]
          Length = 192

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ + +I+ ++   I  ML+ MYS DGIGLAA Q+G+  +L+VIDL
Sbjct: 19  LDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDL 78

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +    +  P+V INPKI   + D    QEGCLSIP    DV+R   + V Y D N + Q 
Sbjct: 79  ELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQR 138

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKK 161
           + ADGLLA C+QHE+DHLNG+LF+D + +RL+ +    K
Sbjct: 139 LVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDK 177


>gi|328907667|gb|EGG27431.1| polypeptide deformylase [Propionibacterium sp. P08]
          Length = 200

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + +P+L   +RPI + + D+  LI +M   M + DG+GLAA Q+GV   L V 
Sbjct: 20  ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK---RSAFITVRYMDCN 118
              D  +  +   F NP +          +        +    +   R    T    D  
Sbjct: 80  ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +   G  A CLQHE DH NG++F D LS+  R  + ++
Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQ 182


>gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
 gi|198271816|gb|EDY96086.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
          Length = 184

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ ++ I      +  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRQEAQDITPDYPGLKELITNMFETMDRADGVGLAAPQIGLPIRVVVV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           +     +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLSDDMPEFKDFKRTYINPHILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N Q    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +V  +
Sbjct: 121 ENMQPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIRGKLNSMVNGK 173


>gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181]
 gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181]
          Length = 165

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++ +  ++     LI +M E MY ++GIGLAA Q+    R++V
Sbjct: 1   MAILTILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +       +    I   +    Y+EGCLS+P +   V+R  +I V+ +D   +
Sbjct: 61  IDISDDKNDLL---TLINPEIIQKEGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A GLL+ C+QHE+DHL G +F+++LS LK++ I
Sbjct: 118 SFEIEAHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155


>gi|109947463|ref|YP_664691.1| peptide deformylase [Helicobacter acinonychis str. Sheeba]
 gi|122973308|sp|Q17XD4|DEF_HELAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|109714684|emb|CAJ99692.1| polypeptide deformylase [Helicobacter acinonychis str. Sheeba]
          Length = 175

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++     +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKFHQQLDDMHETMIASEGIGLAAIQVGLPLRMLL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +++EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGSIMFKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AKVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|312890426|ref|ZP_07749963.1| peptide deformylase [Mucilaginibacter paludis DSM 18603]
 gi|311297196|gb|EFQ74328.1| peptide deformylase [Mucilaginibacter paludis DSM 18603]
          Length = 190

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +K P++ + DP+LRR +  IE      I  L++NM E MY+  G+GLAA Q+G+  RL V
Sbjct: 1   MKYPIIAYGDPVLRRAATNIEPDEYPHIKELVENMFETMYAARGVGLAAPQVGLSMRLFV 60

Query: 61  IDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID                VFIN K++  + +   + EGCLSIPD R DV R   + + Y 
Sbjct: 61  IDATPFDDDEPELKDFKKVFINAKVLEETGEEWSFNEGCLSIPDIREDVYRKPVVRLSYY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D N +H      GL A  +QHE DH+ G LF D LS L++ +I KK++ + + 
Sbjct: 121 DENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKLSPLRKRLIQKKLTDISKG 173


>gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
 gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
          Length = 232

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M ++ ++   DP LR+VSRP+ +    +++ LI ++ + M + DG GLAA QI V  R+V
Sbjct: 10  MAERTVLRLGDPRLRQVSRPVTRFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVV 69

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I           EGCLS+P  R  V R   I  R 
Sbjct: 70  IFGITVNPRYPEAPPIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWRRIHYRG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            D           G  A  +QHE DHL+G+LF D L   +    T+++ 
Sbjct: 130 FDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRLEDTRALGFTEELE 178


>gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453]
 gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453]
          Length = 164

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L + ++ + KI  ++  L+D+M + MY  DG+GLAA Q+G+L RL+V
Sbjct: 1   MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D          +    I  S+      EGCLSIP +  DV+R+  +TV+ +D    
Sbjct: 61  IDAGDEHGLIK----MINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHL 150
             I+   GLLA   QHE+DHLNG+LF    D +
Sbjct: 117 ELIVTGTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 176

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVETFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGNSERYPEAPPVPETVLVNPGVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|225452422|ref|XP_002276964.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera]
          Length = 275

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 88/169 (52%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V +PDPILR  ++ I   + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V 
Sbjct: 81  APLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 140

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +          +V +NP++  +S    ++ EGCLS P   ADV+R   + +   D     
Sbjct: 141 NPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGAR 200

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +I   GL A   QHE DHL G LF D ++    D I   +  L +  +
Sbjct: 201 FMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQDLERKYE 249


>gi|154149172|ref|YP_001405640.1| peptide deformylase [Campylobacter hominis ATCC BAA-381]
 gi|153805181|gb|ABS52188.1| peptide deformylase [Campylobacter hominis ATCC BAA-381]
          Length = 171

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L + S+ +EK + ++   +D+M E M S  GIGLAA+Q+G   R +VI
Sbjct: 1   MILEILTYPNKKLYQKSKKVEKFDDELGKFLDDMYETMISKKGIGLAAIQVGRPIRAIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L D    +     +          +   +YQEGCLS+P Y  DVKR+ F+ + + +   
Sbjct: 61  NLVDENDEQKKENLLEIINPEILTQEGEIIYQEGCLSVPGYYEDVKRAEFVKLGFQNRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + + +    LLA C+QHE+DHL+G LFI+ +   KR    K+  K ++ +
Sbjct: 121 ETKEMEVQELLAVCIQHEIDHLDGHLFIEKIGYNKRKKFDKEFKKHLKEK 170


>gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax SaI-1]
 gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax]
          Length = 186

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V++PDP+LR+    +   + ++  L+ +M  VMY + G+GLAA Q+ +  R++V + 
Sbjct: 10  LKIVLYPDPVLRKKCDEVVHFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISRRIIVWNA 69

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +   ++N  VFINP I+  S   S   EGCLS PD    V R + +++ Y D +    
Sbjct: 70  LYEKKKKENERVFINPSIVEPSLVRSKLVEGCLSFPDIEGKVDRPSVVSISYYDLDGNKH 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +    G+ A   QHE DHL+G+LFID  S+ +R  +  K++ L++
Sbjct: 130 LKILKGIHARIFQHEYDHLDGVLFIDRFSQSERHKVRAKLNALIR 174


>gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
 gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987816|gb|EEC54142.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
 gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 184

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
 gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
          Length = 185

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F  P+LR+V+  I     ++  LIDNM E +  ++GIGLAA QIG+  RLVVI
Sbjct: 1   MVLPIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVI 60

Query: 62  DLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +L                      +     +    +EGCLS+P     V+R   I V Y+
Sbjct: 61  NLDLISDDLPEYKGFVHAFINPHILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D   Q    + +G LA  +QHE DHL+G +F+DHLS L++ M+  K+  L++ 
Sbjct: 121 DEVFQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLKG 173


>gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
 gi|254767609|sp|B9L0C1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
          Length = 176

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   DP LR+ +  I  ++ ++  L  ++ + + +  G+GLAA QIGVL R++V
Sbjct: 1   MAVRTIITEGDPRLRQKAIRIRVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIV 60

Query: 61  IDLQDHAHRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + +      +             I  +    V  EGCLSIP +  +V RS  +TV+ +D 
Sbjct: 61  VAIPPDYVEEGDPGVELTLINPEIVRASGRQVGLEGCLSIPGWYGEVPRSMHVTVKALDL 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + +   +   GLLA  LQHE+DHL GILF+D +  
Sbjct: 121 DGREVRVKGSGLLARVLQHEIDHLEGILFVDRIED 155


>gi|212212575|ref|YP_002303511.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
 gi|212010985|gb|ACJ18366.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
          Length = 170

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVI 61
            ++ +PDP L+  ++ +EK +  +  +ID M E  Y+           + +     + VI
Sbjct: 3   KILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVI 62

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   +  +  P+  +N +II  S + +  +            V R+A I VR  D   + 
Sbjct: 63  DFSPN--KDQPLCLVNAEIIERSGEHTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               ADG +A C+QHELDHLNGI+F+D LS LKR  I K++ KL + 
Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167


>gi|15645412|ref|NP_207586.1| peptide deformylase [Helicobacter pylori 26695]
 gi|3023623|sp|P56419|DEF_HELPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2313922|gb|AAD07841.1| polypeptide deformylase (def) [Helicobacter pylori 26695]
          Length = 174

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|85700147|gb|ABC74523.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNSF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
 gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
 gi|237726430|ref|ZP_04556911.1| peptide deformylase [Bacteroides sp. D4]
 gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
 gi|212666512|gb|EEB27084.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
 gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4]
 gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
 gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
          Length = 184

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  DLDVMSDELPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++ +
Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173


>gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis
           LMG 19424]
          Length = 177

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L +V+RP+E+ N  ++  LI++M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           D         A+G  A  +QHE DHL GIL+   +   
Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDF 158


>gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
 gi|39930959|sp|Q7NIF5|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
          Length = 187

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/146 (45%), Positives = 92/146 (63%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ S+ I  IN ++  L   ML+ MYS DGIGLAA Q+GV  R++V+D+  
Sbjct: 19  IHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVDIDP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               + P+V INP I  FS D +V QEGCLS+P   ADV+R   +   Y D N +   + 
Sbjct: 79  ENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPVTLE 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           A GLLA C+QHE+DHL+G+LF+D + 
Sbjct: 139 ATGLLARCIQHEIDHLDGVLFVDRVE 164


>gi|134299560|ref|YP_001113056.1| peptide deformylase [Desulfotomaculum reducens MI-1]
 gi|134052260|gb|ABO50231.1| peptide deformylase [Desulfotomaculum reducens MI-1]
          Length = 152

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   D ILR  ++P++++  +I  L+DNM + MY  +G+GLAA QIGV  R++V
Sbjct: 1   MAIYKIVEIGDEILREKAKPVKEVTPNIHKLLDNMADTMYEANGVGLAAPQIGVSKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP+I+  S       EGCLS+P+   +V R+  + V+ ++   +
Sbjct: 61  VDIGEG-----LIELINPEIVEVSGHTVTDTEGCLSVPNMIGEVSRADKLVVKGLNRKGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +  A   LA   QHE+DHL GI+F+D  S L++
Sbjct: 116 EVLYRAKDFLARAFQHEIDHLEGIIFVDKASNLRK 150


>gi|163743815|ref|ZP_02151188.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382964|gb|EDQ07360.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
          Length = 165

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  + + L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID      R       NP+I+  S     ++E   ++P   A +KR   +TVRYMD    
Sbjct: 61  IDGSSERGRAV--RLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  G+ AT +QH+LDHLNG ++ D LS++KRDM+ +K  KL 
Sbjct: 119 TVERDFVGIEATSVQHQLDHLNGKMYFDKLSKVKRDMLIRKAKKLS 164


>gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
 gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
          Length = 187

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I     ++  LI +M E M ++DG+GLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVI 60

Query: 62  DLQ-------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL        ++   +   +  +   I      S  +EGCLSIP     V R   I V+Y
Sbjct: 61  DLNVLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           MD + Q    + +G LA  +QHE DHL G +F+D +S  ++ +I  K+  + Q +
Sbjct: 121 MDSDFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQGK 175


>gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 162

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D       +  INP+I          +  CLS+P Y  DV+R   ITV+ +D + +
Sbjct: 61  V---DDQVGSGLIALINPEITHAEGSQVGPEG-CLSVPGYYGDVERFNKITVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|225022087|ref|ZP_03711279.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680576|ref|ZP_07403384.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
 gi|224945020|gb|EEG26229.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660107|gb|EFM49606.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
          Length = 201

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+  P+L + +  + +    +  LID+M E M    G+GLAA QIGV  R+ V
Sbjct: 7   MTVRPIVIYGTPVLHQPTAIVTEPIDTLRELIDDMFETMEKAHGVGLAANQIGVGKRIFV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRADVKRSAFITVRY 114
            +  D     +   FINP + T      +        EGCLS+P       R+ +  V  
Sbjct: 67  YNCPDDEGVIHRGCFINPVLETSDIPEGMPAVDGSDDEGCLSLPGLSFPTGRATWAKVTG 126

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++ N +       G LA C QHE+ HL+G ++ D L   +     KK  K
Sbjct: 127 LNENGEEVSEEGTGFLARCFQHEVGHLDGFVYADVLQG-RWKRAGKKAIK 175


>gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 177

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  LI +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160


>gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41q Mutant In Complex With
           Actinonin
          Length = 193

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 90/166 (54%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I+  + ++ NL+D M +VMY TD IGL+A Q+G+  +L+V +  
Sbjct: 2   EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVFNPA 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I
Sbjct: 62  GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 167


>gi|317133049|ref|YP_004092363.1| peptide deformylase [Ethanoligenens harbinense YUAN-3]
 gi|315471028|gb|ADU27632.1| peptide deformylase [Ethanoligenens harbinense YUAN-3]
          Length = 160

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D +LR+ SR +   +  +  L+D+M + +   DG+GLAA Q+G+L R VV
Sbjct: 1   MAIRKIVTVGDDVLRKKSRVVTVFDQKLHLLLDDMRDTLLQADGLGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I + D          I  +            EGCLSIP      KR A +T+R  D N  
Sbjct: 61  IRIGDEFVDFVNPEIIAAEGE------QQELEGCLSIPGKWGITKRPAKVTIRAQDRNGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
                 +GLLA    HE DHL+G+L+ DH
Sbjct: 115 FFEKTGEGLLARAFCHETDHLDGVLYTDH 143


>gi|238059170|ref|ZP_04603879.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237880981|gb|EEP69809.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 175

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59
           M  +P+ I  DP+LR    P+   ++++  L+ ++++ +    G  G+AA QIGV  ++ 
Sbjct: 8   MTMRPIRIIGDPVLRTACEPVTTFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVSAQVF 67

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +   H         +    +  SD+     EGCLSIP       R+   T    D + 
Sbjct: 68  VYNADGHRGH------MINPTLELSDETQGDDEGCLSIPGLYFPTPRALHATAHGFDQHG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +   I   G LA  LQHE DHL+G L++D L    R    +++ 
Sbjct: 122 EPLTICGSGFLARALQHETDHLHGRLYVDTLRGDTRRQALREIR 165


>gi|160945220|ref|ZP_02092446.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442951|gb|EDP19956.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105555|emb|CBL03099.1| peptide deformylase [Faecalibacterium prausnitzii SL3/3]
          Length = 178

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G++ RL V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMMRRLFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S++     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N +   + ADGLL  C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGEWFELEADGLLGRCIQHENDHLDGITIME 155


>gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
 gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510]
 gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A]
 gi|158513745|sp|A6L7J9|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
 gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510]
 gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A]
          Length = 184

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +            +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHEAVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++ +
Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173


>gi|159042736|ref|YP_001531530.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910496|gb|ABV91929.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 168

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG----LAAVQIGVLYR 57
           + +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G+G    LAA QIGV+  
Sbjct: 1   MIRPFLSWPDARLRTPAAPVAEITDEIRTVWDDMIDTMEAMPGMGPGAGLAAPQIGVMQA 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           L V+D  +   R       NP+++  S     ++E   ++P   A + R   +TVR++D 
Sbjct: 61  LAVVDASEERGRAI--RMANPQVLHASAQLRSHEEASPNLPGVFAKIDRPRAVTVRFLDA 118

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N   +     GL AT +QH++DHL G ++ D LS+ KRDM+ +K  KL +
Sbjct: 119 NGAVKEQDFVGLWATSVQHQIDHLAGRMYFDRLSKTKRDMLLRKARKLAR 168


>gi|85700135|gb|ABC74517.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKILEASELLAVAVQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|29654308|ref|NP_820000.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|154707431|ref|YP_001424426.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|161830427|ref|YP_001596722.1| peptide deformylase [Coxiella burnetii RSA 331]
 gi|39931093|sp|Q83CV9|DEF1_COXBU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29541575|gb|AAO90514.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|154356717|gb|ABS78179.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|161762294|gb|ABX77936.1| peptide deformylase [Coxiella burnetii RSA 331]
          Length = 170

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVI 61
            ++ +PDP L+  ++ +EK +  +  +ID M E  Y+           + +     + VI
Sbjct: 3   KILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVI 62

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   +  +  P+  +N +II  S + +  +            V R+A I VR  D   + 
Sbjct: 63  DFSPN--KDQPLCLVNAEIIERSGEHTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               ADG +A C+QHELDHLNGI+F+D LS LKR  I K++ KL + 
Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167


>gi|161511100|ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 165

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV +PD  L   +RP+   + ++  L  ++L+ M +  GIG+ A  IGV  R+VV
Sbjct: 1   MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    ++NP+I   S +  +++EG +S+P    +V+R A + + Y D +  
Sbjct: 61  LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q   ++ L A C QHE+D L+G+ +I  LSRLKR+ + KK  K+ + 
Sbjct: 118 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 165


>gi|210134993|ref|YP_002301432.1| peptide deformylase [Helicobacter pylori P12]
 gi|238058211|sp|B6JM24|DEF_HELP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|210132961|gb|ACJ07952.1| polypeptide deformylase [Helicobacter pylori P12]
          Length = 174

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium tepidum TLS]
 gi|25452909|sp|Q8KCG7|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS]
          Length = 187

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+L   ++P++ ++S I  LI  M + MY   GIGLAA Q+G   RLVV+
Sbjct: 1   MILPINTYSDPVLAMKAKPLKGVDSAIEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVV 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+     +     + +    I      S+ +EGCLS+P    +V R + IT+ Y D   +
Sbjct: 61  DISTIKEYADFKPMVVINPRIVAVRGRSLMEEGCLSVPGIAGNVVRPSAITLHYRDEKFE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                   ++A  LQHE+DHL+G LF+D + +  R  I K++  + + R
Sbjct: 121 EHTADFHSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGR 169


>gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 146

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R +E+I+  ++ LI +MLE MY  DG+GLAA Q+G+L RL V
Sbjct: 1   MALRNIRKYGDDVLRKECREVEEIDKRLLVLIKDMLETMYDADGVGLAAPQVGILKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          I            + +EGCLS+P    +V R  ++  R ++   Q
Sbjct: 61  IDIGDGPLVFINPEIIET------SGKQIDEEGCLSLPGKMEEVMRPNYVRARALNEKGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+ LLA  + HE DHLNG LFID +++
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRVNK 146


>gi|254779233|ref|YP_003057338.1| peptide deformylase [Helicobacter pylori B38]
 gi|254001144|emb|CAX29102.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Helicobacter
           pylori B38]
          Length = 174

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
          Length = 177

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + ++   DPILR++S P+ +      +   LI +M   M   +G+GLAA QIG+L ++
Sbjct: 1   SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQI 60

Query: 59  VVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           VV+  +D+            + +NP I   + D S + EGCLS+P  R  V+R   I ++
Sbjct: 61  VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +MD          DG  A   QHE DHL GIL++D L   K
Sbjct: 121 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161


>gi|39931120|sp|Q89N37|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|27352266|dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 170

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV +PD  L   +RP+   + ++  L  ++L+ M +  GIG+ A  IGV  R+VV
Sbjct: 6   MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    ++NP+I   S +  +++EG +S+P    +V+R A + + Y D +  
Sbjct: 66  LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q   ++ L A C QHE+D L+G+ +I  LSRLKR+ + KK  K+ + 
Sbjct: 123 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 170


>gi|315226589|ref|ZP_07868377.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105]
 gi|315120721|gb|EFT83853.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105]
          Length = 176

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + I PDP+LR V  PI  I   + NL+ ++L+ +      GL+A QIGV  R    
Sbjct: 15  TIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFSY 74

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++                 I          EGCLS+P      +R+ +  V  +D + + 
Sbjct: 75  NIDGKVGYVL------NPKIVARSGEQYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGKK 128

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ++   G++   LQHE DHL+G +++D L + +R    + M +  +
Sbjct: 129 IVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 174


>gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 177

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+ + +  ++  ++ +M E M+  +G GLAA QIG+  +L++
Sbjct: 1   MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|259417291|ref|ZP_05741210.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346197|gb|EEW58011.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 165

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTTRTCLPWPDKRLRTAATEVSEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S +   ++E   ++P   A +KR   +TVR+++ +  
Sbjct: 61  VDGSTERGRAV--RLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  G+ AT +QH++DHLNG ++ D+LS++KRDM+ KK  K  +
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLIKKARKFAR 165


>gi|85700143|gb|ABC74521.1| polypeptide deformylase [Helicobacter pylori]
 gi|85700145|gb|ABC74522.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
 gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
          Length = 181

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K   + +FPDP+LR  +  +        + ++++   MY  DG+GLAA Q+G+  ++ 
Sbjct: 15  MAKLLDICVFPDPVLRVPTEKVADFGPSFQSFLEDLWNTMYLRDGVGLAAPQVGISRKVT 74

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D Q           +  +  T +      +EGCLS P     V R   I +RY +   
Sbjct: 75  VVDAQGQKFVLANPEILEREGETVA------EEGCLSFPGIFVPVLRPTRIRLRYQNERG 128

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +         LA    HE+DHLNG L IDH+S L+R  I +K+ K     D
Sbjct: 129 EPVEREVVDFLARVFSHEIDHLNGRLLIDHVSPLRRQFIQRKLRKAASEAD 179


>gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
 gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
          Length = 201

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 19/188 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ FPDP LR VS+P++    +I  L ++M+E MY  +GIGLAA Q+G L R+VVI
Sbjct: 1   MIMKILTFPDPKLREVSQPVKTFGPEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIIT---------------FSDDFSVYQEGCLSIPDYRADVKR 106
           D +    +     +     +                  +  + + EGCLSIP Y   V+R
Sbjct: 61  DTRPKDEKGRRYKYEEMTELEAAVKQPLILINPEIVKGEGKTTFDEGCLSIPGYYETVER 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL- 165
             +I ++  D N +  I+  DGLLA C+QHE+DHL G LFIDHLS +K + I  ++ K  
Sbjct: 121 YNYIEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHLSFVKGNKIKNQIKKYG 180

Query: 166 ---VQLRD 170
               + ++
Sbjct: 181 YPVKKEKE 188


>gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment)
          Length = 191

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 23/188 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V  
Sbjct: 1   VYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAV 59

Query: 63  LQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                                 V  NP I          +        Y  +V R+  I 
Sbjct: 60  EYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEVPRAERIR 119

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-----------MITK 160
           V Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+              K
Sbjct: 120 VEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQK 179

Query: 161 KMSKLVQL 168
           +   L++ 
Sbjct: 180 EARALLKE 187


>gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23]
 gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23]
          Length = 190

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DP+LR+ +RP++   S +  L ++MLE M+   G+GLAA QIG+  RL V 
Sbjct: 1   MIYPIRLYGDPVLRKKARPVQDF-SGLKKLAEDMLETMWEARGVGLAAPQIGLSQRLFVA 59

Query: 62  DLQDHAHRKNPMVF----------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                   +               +NP I          +        Y  +V R+  I 
Sbjct: 60  VEYADEPDEEERPLRDLVRQVYVVVNPVITHREGLVEGLEGCLSLPGLYSEEVPRAERIR 119

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           V + D   + + +  +G +A   QHE+DHL G+LF + L + KR+   +K
Sbjct: 120 VEFQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFERLPKPKREAFLEK 169


>gi|313836783|gb|EFS74497.1| peptide deformylase [Propionibacterium acnes HL037PA2]
 gi|314929809|gb|EFS93640.1| peptide deformylase [Propionibacterium acnes HL044PA1]
 gi|314972238|gb|EFT16335.1| peptide deformylase [Propionibacterium acnes HL037PA3]
          Length = 209

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + +P+L   +RPI + + D+  LI +M   M + DG+GLAA Q+GV   L V 
Sbjct: 29  ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK---RSAFITVRYMDCN 118
              D  +  +   F NP +          +        +    +   R    T    D  
Sbjct: 89  ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 148

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +   G  A CLQHE DH NG++F D LS+  R  + ++
Sbjct: 149 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQ 191


>gi|296119004|ref|ZP_06837577.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968102|gb|EFG81354.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 202

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +VI  DP+L   + P+ +   + ++  LI +M E M +  G+GLAA Q+G+  RL
Sbjct: 7   MTIRAIVIHGDPVLHNPTEPVTEAIDSPELQTLIADMCETMAAAHGVGLAANQVGIAKRL 66

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG------CLSIPDYRADVKRSAFITV 112
            V D  D     +    INP + T     ++  +       CLS+P       R+ +  V
Sbjct: 67  FVYDCPDDDGHMHKGCIINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWAKV 126

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++   +   +   G  A CLQHE+ HL+GI++ D L    +    K + 
Sbjct: 127 TGLNEKGEDIEVEGTGFFARCLQHEVGHLDGIVYTDTLIGRNKRAAKKTIK 177


>gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
 gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
          Length = 198

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ + ++N +I  L  +ML+ MYS DGIGLAA Q+G+  RL+V+DL  
Sbjct: 19  IHRMGDKVLRQPAKRVSQVNDEIRQLARHMLQTMYSADGIGLAAPQVGIPKRLIVVDLYP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+I  +  +    QEGCLSIP    +V R   + V + D   + + + 
Sbjct: 79  DKPEVPPLVLINPEIREYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQ 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           AD LLA  +QHE+DHLNG+LF+DH+      ++ +++ K
Sbjct: 139 ADDLLARVIQHEIDHLNGVLFVDHVENE--LLLDQELRK 175


>gi|126733796|ref|ZP_01749543.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716662|gb|EBA13526.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 153

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 78/148 (52%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+L   + P+E  ++ +  L+ +M E MY   G GLAA Q+GV  R+ V
Sbjct: 1   MAVRQIRFEGDPVLLETAAPVEAFDASLATLVRDMFETMYDAPGRGLAAPQVGVSRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PM+F+NP+I   +++ ++  E CLSIPD   DV R  ++ +++ D +  
Sbjct: 61  VDTTWKEADPAPMIFVNPQITAHAEEEALGTEACLSIPDQSFDVSRPVWVALKWQDLDGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                   + A C+ HE DHL G+L   
Sbjct: 121 WHEGRFTDVDAVCICHEFDHLEGLLITQ 148


>gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501]
 gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501]
          Length = 196

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LRR    I     ++  LI+NM E MY  +G+GLAA Q+G   RL ++
Sbjct: 1   MILPIVAYGDPVLRRKCEAIGPEYPELATLIENMWETMYQANGVGLAAPQVGRPIRLFLV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  R    VFIN ++   +     + EGCLSIPD R DV R   
Sbjct: 61  DTSPFAEDEDFSPEEQEKLRAFKRVFINAQMQEETGKKWAFNEGCLSIPDIREDVTRQDT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+RY D   +      DGLLA  +QHE DH+ GILF DH+S LK+ ++  K++ + + +
Sbjct: 121 ITLRYQDAEFKEHTETFDGLLARVIQHEYDHIEGILFTDHISSLKKRLLKGKLTNISKGK 180


>gi|302553425|ref|ZP_07305767.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471043|gb|EFL34136.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 208

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 3/163 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + +    + +L +  R + +   D+  LID+M   MY  DG GLAA Q+GV  RL V D
Sbjct: 26  VRRITEAGEEVLHKPCRDVTEFGPDLAALIDDMFLTMYIADGAGLAANQVGVDLRLFVYD 85

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCNA 119
             D    ++    +NP +           +             +V R     VR  D + 
Sbjct: 86  CPDDDGVRHVGHVVNPVLEPLDASHRRLLDDSEGCLSVPGAVMNVPRPDRAVVRGYDRDG 145

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +  +I   G  A CL HE DH+NG +++D LS   R    ++M
Sbjct: 146 EPLVIEGTGYFARCLAHETDHVNGQVYLDRLSGRDRKEALRQM 188


>gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 177

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R++ P+ + +   +  LI++M + M + +G GLAA QIGV  +LV
Sbjct: 1   MAVRDILKMGDPRLLRIAHPVREFDTPALHALIEDMFDTMEAANGAGLAAPQIGVDLQLV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I   S+D     EGCLS+P  R  V R   I    
Sbjct: 61  IFGFTKSERYPEAPPVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVVPRHQRIRYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D   +     A+G  A  +QHE DHL G+L+   +    R
Sbjct: 121 FDPQGRRIEREAEGFHARVVQHECDHLAGVLYPMRVRDFSR 161


>gi|307328361|ref|ZP_07607537.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885934|gb|EFN16944.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 170

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 70/143 (48%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             DP LR     +   ++++  LI++M   MY+  G+GLAA QIGV  R+ V D  D   
Sbjct: 4   LGDPGLRAPCAEVTAFDAELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDDED 63

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            ++    +NP++           EGCLS+P   A   R     +  +    +   I   G
Sbjct: 64  HRHLGHVVNPRLAAADGVNVHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEGTG 123

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
             A CLQHE DHL+G LF+D LS
Sbjct: 124 FFARCLQHECDHLDGGLFLDRLS 146


>gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 148

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + ADGLLA C+QHE+DHL G LFID+LS
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLS 148


>gi|170726943|ref|YP_001760969.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169812290|gb|ACA86874.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 163

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P+  I++ +   ID++LE MY   DGIGLAA Q+G  + ++
Sbjct: 1   MAVLDILTIPDERLKRKAKPVTDISA-VQGFIDDLLETMYHTDDGIGLAATQVGSEHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     R  P V INP+I+    +F   +EGCLSIP YRA V R+  + V  +D   
Sbjct: 60  VIDLSPE--RDQPQVLINPEIVAAEGEFVG-EEGCLSIPGYRAKVARNEKVKVTALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  D  LA  LQHE+DHLNG++F DHLS+LK+ +  +K+SK  
Sbjct: 117 TPFEIETDTFLAIVLQHEMDHLNGVVFTDHLSKLKQQIALRKVSKYA 163


>gi|307298449|ref|ZP_07578252.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915614|gb|EFN45998.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 163

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   +PILR VS  +E  + ++   ++ + + MY  DG+GLAA Q+ +  RL V D  
Sbjct: 2   KVIYIGNPILRDVSEKVEVFDDELRQFVNELSKTMYVEDGVGLAAPQVAISRRLFVYDPG 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D        V +NP+I+  SD+    +EGCLSIP   ADV R A + +RY D    +   
Sbjct: 62  DG-----LRVVVNPEILFRSDEKVKIEEGCLSIPGIYADVVRPASVRIRYQDEYGHYHED 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 A  +QHE DHL+GILF+D+LS  KR ++  K+ ++++ 
Sbjct: 117 DLTDYPARIVQHETDHLDGILFVDYLSSAKRAILKPKLDQIIKE 160


>gi|308063423|gb|ADO05310.1| peptide deformylase [Helicobacter pylori Sat464]
          Length = 175

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  IL+ +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILKTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + 
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170


>gi|208434704|ref|YP_002266370.1| polypeptide deformylase [Helicobacter pylori G27]
 gi|238058212|sp|B5Z7F5|DEF_HELPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208432633|gb|ACI27504.1| polypeptide deformylase [Helicobacter pylori G27]
          Length = 174

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|308184577|ref|YP_003928710.1| peptide deformylase [Helicobacter pylori SJM180]
 gi|308060497|gb|ADO02393.1| peptide deformylase [Helicobacter pylori SJM180]
          Length = 174

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIEAGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|257068838|ref|YP_003155093.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
 gi|256559656|gb|ACU85503.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
          Length = 163

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI  I      L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRIVGDPVLRTPCDPIRTITEGTRTLVRDLKDTVDDEGRAGVAANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               +          +NP I+  S++     EGCLS+P       RSA+     MD   +
Sbjct: 61  WHFVE---TGEIGCILNPVIVELSEELQHDDEGCLSVPGLFYPRTRSAYARCVGMDVEGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +GL+A  +QHE+ HL+G L+ID L R  +    +++ +
Sbjct: 118 EIELAGEGLVARLIQHEVGHLDGELYIDGLERSVKKRALRQIRE 161


>gi|229817674|ref|ZP_04447956.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM
           20098]
 gi|229785463|gb|EEP21577.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM
           20098]
          Length = 160

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLQTVDDPGRAGLSANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++                +I          EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKIGYIL------NPVIEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL    LQHE DHL+G +++D L + +R    + M  
Sbjct: 115 EIVLEGHGLFGRMLQHECDHLDGHVYLDRLEKEERREAMRYMRN 158


>gi|260778893|ref|ZP_05887785.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605057|gb|EEX31352.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 168

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  I   +  LID+MLE +Y +++GIGLAA Q+G    +V
Sbjct: 1   MAVLKILTAPDPKLKIKAEKVSDI-QSVQTLIDDMLETLYATSNGIGLAATQVGHREAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +   R  P++ +NP+++   +     +  CLS+PDY ADV+R   + V  +D + 
Sbjct: 60  IIDLSE--SRDQPLILVNPEVVEGKNRAMGQEG-CLSVPDYYADVERYTSVVVEALDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   I +D  LA  +QHE+DHL G LFID+LS LK+ M  KK+ K ++
Sbjct: 117 EPVRIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKQRMALKKVKKHIK 164


>gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205]
          Length = 200

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 92/151 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR  +R I K++  +  L  +ML  MY+  GIGLAA QIGV  +L+VIDL+
Sbjct: 31  DIHKLGDEVLREPARRIGKVDDAVRKLATDMLVSMYAAKGIGLAAPQIGVNQQLLVIDLE 90

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I +       Y+EGCLSIP    DV R + + V Y D   + + +
Sbjct: 91  LEDPSSPPLVLINPEITSVGGGLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDAFGRPKRM 150

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            ADGL+A C+QHE+DHLNG+LF+D ++  ++
Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDEEK 181


>gi|255657698|ref|ZP_05403107.1| peptide deformylase [Mitsuokella multacida DSM 20544]
 gi|260849886|gb|EEX69893.1| peptide deformylase [Mitsuokella multacida DSM 20544]
          Length = 155

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +     P+L+ V  P+EKI+ D+  L+D+M   MY +DG+GLAA Q+G   R+VV
Sbjct: 1   MAILEIKKAGAPVLKEVCAPVEKIDKDLRKLLDDMAVTMYESDGVGLAAPQVGRPIRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID QD        + +   +ITF +  +   EGCLS+P    +V+R+A + V +++   +
Sbjct: 61  IDCQDDHGL----IELINPVITFREGTATDTEGCLSVPGIYGEVERAAKVKVEFLNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            Q + A GLLA C+QHELDHL G LFID    L R
Sbjct: 117 KQHLTATGLLARCIQHELDHLEGQLFIDIAKSLHR 151


>gi|237753393|ref|ZP_04583873.1| polypeptide deformylase pdf formylmethioninedeformylase
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229375660|gb|EEO25751.1| polypeptide deformylase pdf formylmethioninedeformylase
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 168

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++ +P+P+LR++S+ +E  +  +  L+D M EVM + +G+G++A+Q+    R ++I 
Sbjct: 1   MLEVITYPNPLLRQISKSVEVFDKGLHTLLDEMYEVMLAKNGVGISAIQVAKPIRALLIC 60

Query: 63  LQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + D    ++    +      I   D   ++ EGCLS+P++  ++KR++ I + Y D    
Sbjct: 61  IPDEDGNQHKEDLLEVINPKIIERDGEILFNEGCLSVPEFYEEIKRASNIKIAYQDRYGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q I A   LA   QHE+DHLNG+LFID LS +KR    K++ +  +
Sbjct: 121 PQEIVAQDYLAVAFQHEIDHLNGVLFIDKLSIVKRKKFEKELKQRQK 167


>gi|284047692|ref|YP_003398031.1| peptide deformylase [Acidaminococcus fermentans DSM 20731]
 gi|283951913|gb|ADB46716.1| peptide deformylase [Acidaminococcus fermentans DSM 20731]
          Length = 158

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    PILR  + P+ + +  +  L+ +M E MY+ +G GLAA QIG+  RLVV
Sbjct: 1   MAIYDIVKVGAPILREKAVPVTRFDKKLARLLKDMAETMYAANGCGLAAPQIGLSKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D A  +         ++T  +  +V  EGCLS+PDY  +VKR+A ITV + D    
Sbjct: 61  IDAGDGAGIR----EFVNPVLTDPEGEAVDSEGCLSVPDYEGEVKRAARITVHFQDRKGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           H  + ADGLLA  LQHE DHL G+LFID    L
Sbjct: 117 HYRLTADGLLARALQHECDHLEGVLFIDKAVSL 149


>gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 204

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ +   + ++  LI +M E M +  G+GLAA QIGV  RL
Sbjct: 1   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 60

Query: 59  VVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V    D                    NP++  +    T   D     EGCLS+P     
Sbjct: 61  FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             R+ +  V   +   +   I   G  A  LQHE  HL+G ++ D L+   +    K + 
Sbjct: 121 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 180

Query: 164 K 164
           +
Sbjct: 181 R 181


>gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 174

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP I+  +++   ++EGCLS+P     V+R   + ++Y++   
Sbjct: 61  VC----DDGNGVLRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165


>gi|253702639|ref|YP_003023828.1| peptide deformylase [Geobacter sp. M21]
 gi|251777489|gb|ACT20070.1| peptide deformylase [Geobacter sp. M21]
          Length = 168

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59
           M  + +V +P+ IL+   + +E+I+  +  L+D++++ M +  G    A  QIGV  R+ 
Sbjct: 1   MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMQAGPGSVGVASPQIGVSLRVC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           VID+  + H K+       +    I      +V +EGC+S+PDY  DV+RS  +T+R+ +
Sbjct: 61  VIDVSKNRHGKDNNHGLLLMINPEILARSGAAVMREGCMSVPDYTGDVERSTELTLRFTE 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   + I A G  A  +QHELDHL+G+LF+D ++ LK  +  +K  K
Sbjct: 121 PDGTVREIDASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|163738220|ref|ZP_02145636.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|161388836|gb|EDQ13189.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 169

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L   ++PI     ++  L  +MLE MY+  G GLAA Q+GVL RL V
Sbjct: 1   MAVLPIRAWPDPVLSTPAKPIATPG-NVETLARDMLETMYAAPGRGLAAPQVGVLIRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++P+V +NP I+  S + +   EGCLSI     +V R A++ + + D +  
Sbjct: 60  MDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGCLSIKGVSLEVTRPAWVDLAWSDLHGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                 +G  A C+QHE DHL G +  D +S 
Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151


>gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305]
 gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20]
 gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98]
 gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14]
 gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91]
 gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9]
 gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210]
 gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894]
 gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112]
 gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215]
 gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH]
 gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU]
 gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243]
 gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b]
 gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305]
 gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH]
 gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU]
 gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 177

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745]
 gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745]
          Length = 162

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D       +  INP+I          +  CLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  V---DDQSGSGLIALINPEITHAEGSQVGPEG-CLSVPGYFGDVERFNKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|271966900|ref|YP_003341096.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270510075|gb|ACZ88353.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+    +P+L R    + + + D+  L+ +M   MY+ +G+GLAA QIG+  R+ V 
Sbjct: 8   TARPITFVGEPVLHRPCETVTRFDDDLAMLVADMFASMYAAEGVGLAANQIGIGLRVFVY 67

Query: 62  DLQDHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D        V +NP         +    Y EGCLS+P  RA + R     V   D  
Sbjct: 68  DCPDETEEFRKGVVVNPTLVMPGPDEEHLDDYAEGCLSVPGQRASLARPDRAVVHGFDVT 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                +   GLLA CLQHE DHL G L+ID L   +R+ +        Q RD
Sbjct: 128 GAPVTVEGTGLLARCLQHETDHLEGRLYIDRLPAERREQVLAAYE---QERD 176


>gi|118340581|gb|ABK80631.1| putative formylmethionine deformylase [uncultured marine
           Nitrospinaceae bacterium]
          Length = 169

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++++PD  L++VS+P+E+ + D+   I+N+ E   S    +G+AA Q+G L R+V
Sbjct: 1   MALLNILVYPDERLKQVSQPVEEFSEDLKKFIENLEETFRSFPGCVGIAAPQVGRLERIV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++D+   +   N    +         +  S+ +EGCLS+PD+   V+RS  I ++ ++  
Sbjct: 61  LVDISHKSKHVNHGFLVLINPEVIFYEGNSLGREGCLSVPDFIGKVERSKSINLKALNQK 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +   +   G  A  +QHE+DHLNG LF+D L   +R+ ++K++ 
Sbjct: 121 GEKLELQMSGYEARAVQHEIDHLNGKLFLDRLVS-RRNSLSKRIE 164


>gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus sp. SIP3-4]
          Length = 177

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P++   DP+L + + P+   +  ++  LI +M + M   +G G+AA QIGV  R+V
Sbjct: 1   MPIRPVLRMGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A +    V +NP +   +DD     EGCLS+P  R  V R   +    
Sbjct: 61  IFGVGKNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D           G  A  +QHE DHL+GIL+   +  L
Sbjct: 121 FDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDL 159


>gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 164

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+PDP+LR  ++ IE+ + +  + ++ M  +MY  DG+GLAA Q+G   ++ V
Sbjct: 1   MSDRTIRIYPDPVLREPTKEIERFDDNFKSFLEEMESLMYEYDGVGLAAPQVGESLKVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +    I   D   V QEGCLS P    DV R A + V   D N +
Sbjct: 61  I------AYEGKLHVLINPRIVDYDGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+G LA  + HE+DHLNG L IDHLS +KR+M+
Sbjct: 115 PYSIEAEGFLARAMCHEIDHLNGKLMIDHLSPMKREMV 152


>gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
 gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
          Length = 191

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 14/179 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V + + +L    +P+ K ++++  L +NM++ MY  +GIGLAA Q+G+     V+
Sbjct: 1   MLLQIVQYGEKVLHETGKPVTKFDAELAELFENMVDTMYEAEGIGLAAQQVGLPLMFCVV 60

Query: 62  DLQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           DL                      PM   NPK+         Y+EGCLS P+ R DV+R+
Sbjct: 61  DLNGCDPDFDYTLDGAKPPFDLFMPMAIANPKVELIKSKELAYEEGCLSFPEIRGDVERT 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +I   + D      +I A+GLL  C+QHE+DHLNGILFID + +     I  ++++L 
Sbjct: 121 DWIRCEFQDLQGNPHVIEANGLLGRCIQHEVDHLNGILFIDRMKKRVLKKIQPQVNQLK 179


>gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822]
 gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822]
          Length = 187

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/147 (39%), Positives = 89/147 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ I K++  +  L   ML+ MYS +GIGLAA Q+ V  +L+V+D 
Sbjct: 17  LEIHYLGDRVLRQPAKRIAKVDDAVRQLAKEMLQTMYSANGIGLAAPQVAVNKQLLVVDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INP+I  FS D   ++EGCLSIP    DV R   I V + D + + + 
Sbjct: 77  EPDNATNQPIILINPQITHFSRDLCQFEEGCLSIPGVYLDVVRPKAIEVSFKDESGRPKK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
           + A GLLA  +QHE+DHLNG++F+D +
Sbjct: 137 LKATGLLARVIQHEMDHLNGVMFVDRV 163


>gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 176

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  +++P+E+ +   +  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEIAQPVERFDTPALNELVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A I     
Sbjct: 61  FGFGNNNRYPEAPPVPETVLINPKVEFMPPDMEEGWEGCLSVPGMRGVVSRYAKIRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|123761479|sp|Q493I1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 173

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 3/153 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+  ++ D   +I++M + MY   GIGLAA Q+ +  +++V
Sbjct: 1   MSILEILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL     ++          IT         E CLSIP     V RS  IT++ +D    
Sbjct: 61  IDLYKKNKQRL---VFINPSITKKTGIISIPESCLSIPQIYEIVPRSEKITIQSLDQYGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+ LLA C+QHE+DHL G LFIDHLS L
Sbjct: 118 KFEMEANNLLAICIQHEVDHLFGKLFIDHLSPL 150


>gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280]
 gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280]
          Length = 177

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSLPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|194336843|ref|YP_002018637.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693370|sp|B4SBG6|DEF_PELPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194309320|gb|ACF44020.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 188

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ I+ D ILR  ++P++ ++S I  LI +M E M +  GIGLAA Q+G   RL+V 
Sbjct: 1   MILPINIYSDDILRLKAKPLKGVDSAIEELIASMFESMRNASGIGLAAPQVGRSIRLLVL 60

Query: 61  -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +        + PMV INP I++     +  +EGCLS+P  +  V R A IT++Y D + 
Sbjct: 61  DVSCVSKCEHEKPMVVINPHILSV-RGHNDMEEGCLSVPGVQGYVVRPAAITLKYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             +     G++A  +QHE+DHL+G LF+D + +  R  I K+++ L 
Sbjct: 120 AERTGEFSGMVARVIQHEIDHLDGTLFVDRMEKRDRKKIQKELTALA 166


>gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S]
 gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707]
 gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S]
 gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707]
          Length = 205

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   ++P+ +  +++ +LI +M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MAILPIRIVGDPVLHEPTKPVTESPAELADLIRDMYETMDAANGVGLAANQVGVAKRLFV 60

Query: 61  IDLQD----HAHRKNPMVFINPKIITFSDDFSVYQ---------EGCLSIPDYRADVKRS 107
            D  D          P++     +    +   + +         EGCLS+P  +    R+
Sbjct: 61  YDCPDYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDVEGCLSVPGEQFPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +  V   D +     I   G  A  LQHE  HL+G L++D L    +    K + +
Sbjct: 121 DWAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKRAAKKTIKR 177


>gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1]
 gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1]
          Length = 177

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 99/165 (60%), Gaps = 1/165 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + I+PD  L+  ++ +E+ N ++++L++ M E MY   G+GLAA Q+GVL R++++DL+
Sbjct: 3   DIRIYPDEALKSKAQKVEEFNQELVDLVNGMFETMYKRGGVGLAANQVGVLKRVLILDLK 62

Query: 65  DHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +     +       + +   V +EGCLS+P     VKR+ ++ V+  + + +   
Sbjct: 63  AGTEEQGKNPIVLVNPEIVASEGEVVKEEGCLSLPGLYRKVKRAQWVKVKAQNLDGEEIE 122

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           I  +GLLA  LQHE+DHLNG++FID LS L++ +  +K  KL + 
Sbjct: 123 IEGEGLLARALQHEIDHLNGVVFIDRLSPLQKRLALEKFKKLKRN 167


>gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 190

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + ++ +P+L + +  + + +  +  L+ +M   M    G+GLAA QIG+  R+  
Sbjct: 1   MPIRQITVYGEPVLHKRAVEVTEFDDALRALVADMHLTMDEAHGVGLAAPQIGLGLRMFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               D        V INPK+                EGCLS+P     ++R+ +  V   
Sbjct: 61  YVFADQDDAPERGVVINPKLTLSKVSQAPAHPDEDSEGCLSVPGLNYPLQRADYAKVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D         A G  A  +QHE DHL+G L++D L         K+  K  +
Sbjct: 121 DEFGNPISFEAHGWFARIMQHEYDHLDGYLYVDKLQP----RWEKRWKKAKK 168


>gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
          Length = 193

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 90/166 (54%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I+  + ++ NL+D M +VMY TD IGL+A Q+G+  +L+V +  
Sbjct: 2   EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNPA 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I
Sbjct: 62  GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 167


>gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52785552|ref|YP_091381.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2]
 gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52348054|gb|AAU40688.1| Def [Bacillus licheniformis ATCC 14580]
 gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2]
          Length = 160

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V +P  +L   + P+   +  +  L+DNM + M   DG+GLAA QIGV  R  V
Sbjct: 1   MAVKPIVTYPAEVLETPAEPVASFDKSLKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  +NP++I  S + +  +  CLS PD   +VKRS ++ V+  D   +
Sbjct: 61  VDIGDDTGR---IELVNPEVIEESGEQTGPEG-CLSFPDLYGEVKRSDYVKVKAFDRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+G LA  L HE+DHL+GILF   ++R
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKVTR 148


>gi|224438109|ref|ZP_03659044.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
          Length = 175

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 3/157 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ +P+PILR+ S  +E  +  +  L+D+M E M  + G+GLAA+Q+G+  R++VI
Sbjct: 4   ATLAILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVI 63

Query: 62  D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +    +D    K  ++ +        +D   ++EGCLS+P++   VKR   ++V Y D  
Sbjct: 64  NLPRDEDKQQYKEDLLEVINPTFLTQEDDIEWEEGCLSVPEFYESVKRFNKVSVAYKDRF 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +I+ A+G LA  LQHE+DHLNGILF+D L  L+R
Sbjct: 124 GNDKILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 160


>gi|15611796|ref|NP_223447.1| peptide deformylase [Helicobacter pylori J99]
 gi|8134402|sp|Q9ZL51|DEF_HELPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
          Length = 174

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSIMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|257438995|ref|ZP_05614750.1| peptide deformylase [Faecalibacterium prausnitzii A2-165]
 gi|257198580|gb|EEU96864.1| peptide deformylase [Faecalibacterium prausnitzii A2-165]
          Length = 178

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L R+ V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRIFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S+D     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N     + A+ LLA C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGNWFELEAENLLARCIQHENDHLDGITIME 155


>gi|116328151|ref|YP_797871.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331396|ref|YP_801114.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122280858|sp|Q04RW4|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122284057|sp|Q051Q7|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 178

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   D ILR+VS P+ +      +   LI +M + M   +G+GLAA QIG+L +
Sbjct: 1   MSVRKILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60

Query: 58  LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV+     +           V +NP I   + D S + EGCLS+P  R  V+R   I +
Sbjct: 61  IVVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           ++MD          DG  A   QHE DHL+GIL++D L   K
Sbjct: 121 QWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTK 162


>gi|158320460|ref|YP_001512967.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158140659|gb|ABW18971.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 147

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++S+P++ I+  I+ L+D+M+E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRKEEDPVLRKISKPVDTIDDKIITLLDDMIETMYDADGVGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I    +          EGCLS+P    +V R   + V+  D    
Sbjct: 61  IDIGEGVIELINPEIIAEDGV------QCDNEGCLSLPGITEEVARPRTVKVKGFDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+  + LLA  L HE+DHLNGILFID   +
Sbjct: 115 EMIVEGEELLARALCHEIDHLNGILFIDRAEK 146


>gi|19704492|ref|NP_604054.1| polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|23396540|sp|Q8REF0|DEF_FUSNN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 174

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYKIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP I+  +++   ++EGCLS+P     V+R   + ++Y++   
Sbjct: 61  VC----DDGNGVLRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165


>gi|189218929|ref|YP_001939570.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum
           V4]
 gi|238692077|sp|B3DUG9|DEF_METI4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189185787|gb|ACD82972.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum
           V4]
          Length = 190

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 13/180 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   LV++ +PILR+   PI+  +  +  L+ +MLE M    G+GLAA Q+G+  +L VI
Sbjct: 1   MILKLVLYDNPILRKKGMPIDSFDDRLKRLVQDMLETMAYYKGVGLAAQQVGLNLQLAVI 60

Query: 62  DLQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D+                   ++  +F+    ++++    +  EGCLS P  R DV RS 
Sbjct: 61  DVSGSKLSSSLLIGGKPAMVEEHMPLFLINPTLSYTQSKEISNEGCLSFPGLRIDVPRSK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + V+  D   +     A G L+  +QHE DHL G LFID+LS  ++  I +++ K+ + 
Sbjct: 121 RVKVKTFDLEGRPWYFEAGGFLSVAIQHEFDHLQGKLFIDYLSAEQKKAIKEELEKIKRG 180


>gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
          Length = 165

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +  +PD +L   + P+ +I  ++  LI++M+E MY  DG+GLAA Q+G   RL+ +
Sbjct: 1   MKLEICTWPDDVLAARAEPVAEITPEMKKLINDMVETMYEGDGVGLAAPQVGESIRLICV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+   D     +EGCLS P++   V R   + V  MD +   
Sbjct: 61  DQTGPKLRADLRVLINPEIVE-CDGEVESEEGCLSCPEFSGTVMRKERVKVTGMDPDGGP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             I  DG LA  LQHE+DHLNGI   D   RLK+ M  K+ +K  
Sbjct: 120 VCIDTDGFLAIVLQHEIDHLNGITIADRAGRLKKAMYRKRAAKWK 164


>gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16]
          Length = 177

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L +V+RP+E+ N  ++  LI++M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGH 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL GIL+   +   ++
Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDFRQ 160


>gi|126733795|ref|ZP_01749542.1| formylmethionine deformylase [Roseobacter sp. CCS2]
 gi|126716661|gb|EBA13525.1| formylmethionine deformylase [Roseobacter sp. CCS2]
          Length = 166

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V++P P LR  + P+  I  ++  + D M+  M +  G+GLAA Q+GV   L V
Sbjct: 1   MTHRPFVMWPHPALRTAATPVAVITDEVRAIWDEMIVAMDTMPGVGLAAPQLGVEMALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   +       NP I+  S +  V++EG  ++P   A V R   +TVR+++ + Q
Sbjct: 61  IDASEERGQAI--RMANPTILHSSVEPRVHEEGSPNLPGVWAKVTRPRAVTVRFLNADGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL AT +QH++DHL+G +F DHL+R+KRDM+ KK +KL + 
Sbjct: 119 WDRQDFVGLWATSVQHQIDHLSGKMFFDHLTRVKRDMLIKKSAKLRRG 166


>gi|315644089|ref|ZP_07897259.1| peptide deformylase [Paenibacillus vortex V453]
 gi|315280464|gb|EFU43753.1| peptide deformylase [Paenibacillus vortex V453]
          Length = 172

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  K +V F DPILR+V+RP++ +N+  + ++D+M E +Y      GLAA QIG+L RL+
Sbjct: 1   MTVKAIVPFGDPILRKVARPVDPVNARALKILDDMAETLYDSAGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +          +               E CLS P Y   V+R+  + V+ ++   
Sbjct: 61  VMDCGEGLIELINPEIVEMNGEQVGP------EACLSYPGYYGYVQRAHHVKVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  +  LA C+QHE+DHLNG+LF+DH+
Sbjct: 115 ETIILEGEDYLARCMQHEIDHLNGLLFVDHV 145


>gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
 gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
          Length = 198

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 87/157 (55%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V++PDP LR  +  I   + ++  L+D ML+VMY TDG+GL+A Q+GV  RL+V + 
Sbjct: 11  LSIVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNP 70

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +    +    VF+NP I+ F  +    +EGCLS    +ADV+R   I V   D N +   
Sbjct: 71  EGERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFG 130

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
               G  A   QHE DHL G+L+ID ++    + I K
Sbjct: 131 TTFRGWTARIFQHEYDHLEGVLYIDRMTPKALNSIGK 167


>gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
 gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
          Length = 198

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 87/157 (55%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V++PDP LR  +  I   + ++  L+D ML+VMY TDG+GL+A Q+GV  RL+V + 
Sbjct: 11  LSIVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNP 70

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +    +    VF+NP I+ F  +    +EGCLS    +ADV+R   I V   D N +   
Sbjct: 71  EGERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFG 130

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
               G  A   QHE DHL G+L+ID ++    + I K
Sbjct: 131 TTFRGWTARIFQHEYDHLEGVLYIDRMTPKALNSIGK 167


>gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 176

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L RV+ P+ +  + +I  LI +M E M    G+GLAA Q+ V  R+ 
Sbjct: 1   MAILKIARMGHPVLLRVADPVPDPTDPEIRRLIRDMAETMLDAGGLGLAAPQVHVPLRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V    +          +NP+I           EGCLSIP  R +V+R+  I  R +D   
Sbjct: 61  VFRQGETVAA-----LVNPEIELLGPPDQRGWEGCLSIPGLRGNVERAQRIAFRGLDVEG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                  +GLLA  +QHE DHLNGIL+   +S 
Sbjct: 116 DSVEGEVEGLLARVMQHEFDHLNGILYPSRMSD 148


>gi|84514540|ref|ZP_01001904.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511591|gb|EAQ08044.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 152

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/147 (38%), Positives = 78/147 (53%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   L    DP+LR V+ P+   + D+  L+  ML  MY+  G GLAA Q+GV  R+ VI
Sbjct: 1   MALDLRFDGDPVLRAVAEPVTAFDEDLALLVAEMLATMYAAPGRGLAAPQVGVSQRVFVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D        +P  F+NP+II  S   +   E CLSIPD    V R  ++ +R+ D     
Sbjct: 61  DTTWKDGDPDPQAFVNPQIIARSKTTATAVEACLSIPDRAFAVTRPIWVDMRWQDIAGDV 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
           Q    DG+ A C+ HE DHL+G+L  D
Sbjct: 121 QQGRFDGVAAICVCHEYDHLDGVLITD 147


>gi|126728526|ref|ZP_01744342.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711491|gb|EBA10541.1| peptide deformylase [Sagittula stellata E-37]
          Length = 163

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V +PD  LR  +  ++ I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPFVPWPDKRLRAAAAQVDAITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R   +   NP+I+  S     ++EG  ++P   A + R   +TV Y+D    
Sbjct: 61  VDASD--ARGQAVRMANPEILHASVQLRDHEEGSPNLPGVWAKIARPRAVTVAYIDETGL 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHLNG ++ D LS++KRDM+ +K  K+
Sbjct: 119 RVERDFVGLWATSVQHQVDHLNGRMYFDRLSKVKRDMLIRKARKM 163


>gi|317011008|gb|ADU84755.1| peptide deformylase [Helicobacter pylori SouthAfrica7]
          Length = 174

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +  +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDEKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPREDDLQHKEDCLEIINPKWIETKGSLMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKILEASALLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802]
 gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802]
          Length = 187

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 90/148 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ I K++  I  L   ML+ MYS++GIGLAA Q+GV  +L+V+D 
Sbjct: 17  LEIHFLGDRVLRQPAKRIAKVDDTIRQLAKEMLQTMYSSNGIGLAAPQVGVHKQLIVVDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             +     P++ INP+I  FS +  V +EGCLSIP    DV R   I V + D   + + 
Sbjct: 77  DPNDPANQPIILINPQITRFSQELCVVEEGCLSIPGVYLDVTRPKAIEVSFRDEQGKPRK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A  LLA  +QHE+DHLNG++F+D ++
Sbjct: 137 LQATDLLARVIQHEMDHLNGVMFVDRVN 164


>gi|256827225|ref|YP_003151184.1| peptide deformylase [Cryptobacterium curtum DSM 15641]
 gi|256583368|gb|ACU94502.1| peptide deformylase [Cryptobacterium curtum DSM 15641]
          Length = 175

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 86/157 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDPILR+ +   +  +  + +L   M E MY  +G GLAA Q+GVL RL+VID   
Sbjct: 3   IVLSPDPILRQRAEEADIADESLKSLAQQMAETMYENNGCGLAAPQVGVLKRLIVIDCDT 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +  +NP+  INP I+  + ++    EGCLS+P     ++R AF  V Y D +     I 
Sbjct: 63  ESEERNPITLINPVILETAGEWETEGEGCLSVPGITVPIRRRAFARVEYRDLDGNVCTIE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            DGLL  CLQHE+DHLNG    +    + R    +  
Sbjct: 123 GDGLLGRCLQHEIDHLNGKTLFESCDPITRIAALRDY 159


>gi|302867673|ref|YP_003836310.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315505926|ref|YP_004084813.1| peptide deformylase [Micromonospora sp. L5]
 gi|302570532|gb|ADL46734.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315412545|gb|ADU10662.1| peptide deformylase [Micromonospora sp. L5]
          Length = 167

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVI 61
            +P+ I  DP+LR  S P+   ++++  L+ ++++ +    G  G+AA QIGV  ++ V 
Sbjct: 1   MRPIRIIGDPVLRTPSEPVTSFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVNAQVFVY 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   H         +    +  SD+    +EGCLSIP       R+   T    D + + 
Sbjct: 61  DADGHRGH------MINPTLEVSDELQDDEEGCLSIPGLYFPTPRALHATAHGYDQHGEP 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +   G LA  LQHE DHL G L++D L    R    +++ 
Sbjct: 115 LTVTGSGFLARALQHETDHLRGRLYVDTLRGDTRRRALREIR 156


>gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 210

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ +   + ++  LI +M E M +  G+GLAA QIGV  RL
Sbjct: 7   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 66

Query: 59  VVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V    D                    NP++  +    T   D     EGCLS+P     
Sbjct: 67  FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 126

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             R+ +  V   +   +   I   G  A  LQHE  HL+G ++ D L+   +    K + 
Sbjct: 127 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 186

Query: 164 K 164
           +
Sbjct: 187 R 187


>gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 196

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  DP+L   +  + +   ++  LI +M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MAILPIVIVGDPVLHNPTERVTQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFV 60

Query: 61  IDLQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D      P          V    +I     D    +EGCLS+P  +    R+ +  
Sbjct: 61  YDCPDAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRAEWAR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V  +D N     I   G  A  LQHE+ HL+G L++D L         K + +
Sbjct: 121 VTGIDENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKLVGRHARAAKKTIKR 173


>gi|145220094|ref|YP_001130803.1| peptide deformylase [Prosthecochloris vibrioformis DSM 265]
 gi|189083076|sp|A4SFP2|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
          Length = 190

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+  + D +L + ++P++ ++  +  LID+M E M +  GIGLAA Q+G   RL+V 
Sbjct: 1   MILPITTYTDEVLHQTAKPLKGVDGAVEELIDSMFESMENASGIGLAAPQVGHSLRLLVL 60

Query: 61  -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I          PMV INP I++      + +EGCLS+P  + DV+R + IT++Y D N 
Sbjct: 61  DISCMKSYEDVAPMVVINPHILSVKGKN-LMEEGCLSVPGVQGDVQRPSSITLKYRDRNF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             Q     G+LA  LQHE+DHL+G LFID + +  R  I K++  + + 
Sbjct: 120 LEQTEEFSGMLARVLQHEIDHLSGTLFIDRMEKRDRRKIQKELDDIAKG 168


>gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52]
 gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52]
          Length = 157

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDPIL +   P+   +  +  L+D+M E M + DG+GLAA QIGV  ++ V
Sbjct: 1   MSVLPIVTYPDPILEQPCAPVTAFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R   +  INP +I    +    +  CLS P    +V R+ F+ VR  +   +
Sbjct: 61  IDVGDEHGR---IELINPVVIEARGEQVDVEG-CLSFPGLFGEVPRAKFVKVRAQNRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  LQHE+DHL+G+LF   +
Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKV 146


>gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 177

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R +RP+      ++  ++ +M+E M++  G+GLAA Q+G+  RLV+
Sbjct: 1   MILDILRMGDPRLMRAARPVCAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V  NP +   SD+     EGCLS+P  R  V R   +  R  
Sbjct: 61  FGFERSERYPDAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRFRHLLYRGA 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D + +      +G  A  +QHE DHL+GIL+   +S   R
Sbjct: 121 DIDGKPLEREVEGFHARVVQHECDHLDGILYPARISDFSR 160


>gi|300784243|ref|YP_003764534.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299793757|gb|ADJ44132.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 166

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  F DPIL+ V  P+   +  +  L+ ++++ +      GLAA QIGV  R+  
Sbjct: 1   MAMRELRYFGDPILKSVCDPVTVFDEKLEALVRDLVDSVKPAGRAGLAAPQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP+I+  S++     EGCLS+P+     +R+    VR +D + +
Sbjct: 61  YD-----VAGLTGYVVNPEIVELSEETHEINEGCLSVPELWFPTRRAMHAKVRGVDVHNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +  + +LA CLQHE DHL+G+L++D L+  ++    ++  
Sbjct: 116 PIEVEGEDVLAQCLQHETDHLDGVLYLDRLTAERKKSALREAR 158


>gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 177

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  LI +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAK 160


>gi|85700139|gb|ABC74519.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 101/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +  + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEPQKKQ 171


>gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797]
 gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797]
          Length = 196

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 85/158 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P P LR  S+P++ I  ++ +++ NM ++MY   GIGLAA Q+ + YRL V
Sbjct: 1   MPALQIVNYPHPALRWKSKPVKSITPELRDIVRNMFDLMYEARGIGLAANQVALPYRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+L    +            IT     +  +EGCLS+P    DVKRS  ITV   D N Q
Sbjct: 61  INLTSDPNEPEEEFVFINPEITKRKGTAEGEEGCLSLPQVYGDVKRSEEITVEAYDLNGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I  D L A  +QHE DH+ GI+F D +   KR+ I
Sbjct: 121 LFEITLDDLAARAVQHEHDHIEGIMFPDRMVEAKRNEI 158


>gi|317012603|gb|ADU83211.1| peptide deformylase [Helicobacter pylori Lithuania75]
          Length = 174

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPKEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEAIELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|152991610|ref|YP_001357331.1| peptide deformylase [Sulfurovum sp. NBC37-1]
 gi|151423471|dbj|BAF70974.1| formylmethionine deformylase [Sulfurovum sp. NBC37-1]
          Length = 174

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PD  L+++SR +   +  + +L+D+M E M + +G+GLAA+Q+GV  R ++I
Sbjct: 1   MVREIVIYPDKRLKQISREVGSFDGALHDLLDDMYETMIARNGVGLAAIQVGVDLRALII 60

Query: 62  DLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++       +H   K   + +   +I   D    +QEGCLS+P    DV+R+  + V Y 
Sbjct: 61  NVPLEKEEGEHDQPKENTLEMINPVIVEMDGKEKFQEGCLSVPGVYEDVERAKHVKVEYY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +  II  D  LA  +QHE+DHL+G +FI+ LS LKR    K+ +K  + +
Sbjct: 121 DRNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIEKLSFLKRKKFEKEWAKRQKAQ 174


>gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361]
 gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361]
          Length = 187

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54
           +  P+  +  P+LR+V++ I      +  LID+M E M ++ G+GLAA QIG       +
Sbjct: 1   MILPIYTYGHPVLRKVAQDIPTDYPGLSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVI 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              ++  D  ++A  ++  +  +   +    +    +EGCLS+P     V R + I V+Y
Sbjct: 61  NLDVLKEDYPEYADFRHAYINPHIIEVDKKSEKVSMEEGCLSVPGLSEKVVRYSRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D   Q    + +G LA  +QHE DHL G++++D ++ L++ +I  K+  ++Q +
Sbjct: 121 LDEELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIRNKLKGIMQGK 175


>gi|118137648|pdb|2EW5|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In
           Complex With Inhibitor
 gi|118137649|pdb|2EW6|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In
           Complex With Inhibitor
 gi|118137650|pdb|2EW7|A Chain A, Crystal Structure Of Helicobacter Pylori Peptide
           Deformylase
          Length = 181

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I
Sbjct: 1   ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  A
Sbjct: 61  NLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFA 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           + +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L 
Sbjct: 121 EVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQ 167


>gi|78188466|ref|YP_378804.1| formylmethionine deformylase [Chlorobium chlorochromatii CaD3]
 gi|78170665|gb|ABB27761.1| peptide deformylase [Chlorobium chlorochromatii CaD3]
          Length = 199

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ I+   +LR+ ++P++ ++ +I  LI  M E M++  GIGLAA Q+G   RL+V 
Sbjct: 12  MILPITIYSHEVLRQKAKPLKGVDKEIETLIAAMFESMHNASGIGLAAPQVGRSLRLLVL 71

Query: 61  -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +   + PMV INP I++     ++ +EGCLS+P  + DV R + IT++Y +   
Sbjct: 72  DVSCLKNYKDEKPMVVINPHILSVRGACAM-EEGCLSVPGVQGDVVRPSAITMKYRNERF 130

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +       G++A  LQHE+DHL+G LF+D + +  +  I  ++++L
Sbjct: 131 EELTAEFSGMVARVLQHEIDHLDGKLFVDRMDKRDKRKIQHELNEL 176


>gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M   P++ +PD  L+R + P+   + D+ + ID++ E MY+   G+G+AA Q+    R+V
Sbjct: 1   MAVLPILTYPDSRLQRKADPVSVFDDDLHHFIDDLTETMYAGPGGVGIAAPQVDRAQRIV 60

Query: 60  VIDLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++D++          + +    +   +   V +EGC+S+PD+  +V R+  I V+  D  
Sbjct: 61  IVDVRPKLGDDCHGLMVLINPELAAWEGMVVGREGCMSVPDFTGNVIRAERIQVQAQDVL 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            + +    +G  A  +QHE+DHL+G+LF+D L   K D+  +K
Sbjct: 121 GRERSYECEGFEARAVQHEMDHLDGLLFLDRLVSRKVDLFRRK 163


>gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068]
 gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068]
          Length = 222

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +  ++ +P P LR+V++PI+++++++  ++  M ++MY   GIGLAA Q+ +  RL VI
Sbjct: 29  TRLQIITYPHPTLRKVAKPIKRVDAELRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +L     +   +VFINP +++     +  +EGCLS+P     V R   + V   +   Q 
Sbjct: 89  NLTAEKGKGEELVFINP-VLSHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQE 147

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 GLLA C+QHE DHL+G++F D +S   R  +  ++ +
Sbjct: 148 ISAEVGGLLARCIQHENDHLDGVMFPDRMSESSRVELGGELQE 190


>gi|302525482|ref|ZP_07277824.1| peptide deformylase [Streptomyces sp. AA4]
 gi|302434377|gb|EFL06193.1| peptide deformylase [Streptomyces sp. AA4]
          Length = 166

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  F DP+L+ V  P+   +S I  L+ ++L+ +      GLAA QIGV  R+  
Sbjct: 1   MAMRELRYFGDPVLKSVCDPVTTFDSKIEALVKDLLDSVQPEGRAGLAAPQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP+I+  S++     EGCLS+P+      R+    VR +D   +
Sbjct: 61  YD-----VGGLTGYVINPEIVHLSEETHEIGEGCLSVPELWFPTVRAKHAVVRGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    +LA CLQHE DHL+G L++D L+  ++    ++  
Sbjct: 116 PIEVEGVDVLAQCLQHETDHLDGKLYLDRLTPDRKKQALREAR 158


>gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
 gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
          Length = 201

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/150 (40%), Positives = 92/150 (61%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ I K+++ + +L  +ML  MY+  GIGLAA Q+GV  +L+VIDL
Sbjct: 31  LEIHTLGDRVLRQPAKRISKVDAAVRDLARDMLRSMYTARGIGLAAPQVGVHKQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I + S     Y+EGCLSIP    DV R + I + Y D   + + 
Sbjct: 91  DIENAAAPPLVLINPEITSASASVDTYEEGCLSIPGVYLDVVRPSAIQLSYRDEMGRPRT 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + ADGL+A C+QHE+DHL G+LF+D ++  
Sbjct: 151 MKADGLMARCIQHEMDHLKGVLFVDRVTDE 180


>gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3]
 gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3]
          Length = 188

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 6/175 (3%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  P+ ++  P+LR +S  I     ++  LI +M + MY +DGIGLAA QIG   RL 
Sbjct: 1   MAKTLPIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQ 60

Query: 60  VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VID                V IN  + + S+D     EGCLS+P     V R   I V Y
Sbjct: 61  VIDATPLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           M+   + Q +   G  A  +QHE DHL+G LF+DH+S +++ +I KK+  +V  R
Sbjct: 121 MNEQFEPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGR 175


>gi|164687803|ref|ZP_02211831.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM
           16795]
 gi|164603078|gb|EDQ96543.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM
           16795]
          Length = 157

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +++IN  I+ L+D+M + MY  DG+GLAA Q+G+L R+VV
Sbjct: 12  MALRQIVKIGEPVLRKKSKVVKEINDRIIELLDDMADTMYEADGVGLAAPQVGILKRVVV 71

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          I  +     +      EGCLS+P    DV R   + VR  +   +
Sbjct: 72  IDIGDGLIELINPEIIETEGEYLDN------EGCLSVPGECGDVLRPYRVKVRAQNRFGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  + LLA    HE+DHL+GIL++D + +
Sbjct: 126 TVEIEGEELLARAFCHEIDHLDGILYVDKVIK 157


>gi|241204791|ref|YP_002975887.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858681|gb|ACS56348.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 164

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   +S +  L  ++L  M +  G+G+ A  IGV    V 
Sbjct: 1   MPIRPILRYPHPGLKTVCAPVTAFDSSLTALAGDLLATMRAAPGVGITAAHIGV-VSRVT 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D A        +NP I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 60  VLELDKADGVRLY--VNPHITWFSQETMSHVEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 VHEDGAEDFLAICVQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|84500578|ref|ZP_00998827.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391531|gb|EAQ03863.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 165

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +PD  LR  +  +  +   +     +M++ M +  G+GLAAVQIGV+ RL V
Sbjct: 1   MAVRPILRWPDRRLRAAAADVVDVTDAVRATWADMIDTMEAMPGVGLAAVQIGVMQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      +       NP+++  S +   ++E    +P   A + R   +TVR+++    
Sbjct: 61  VDASGERGQAV--RMANPEVLHASVEPRDHEEASPCLPGVSARITRPRAVTVRFLNAEGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +     GL AT +QH++DHL G ++ D LS++KRDM+ ++  K
Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARK 162


>gi|313144549|ref|ZP_07806742.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
 gi|313129580|gb|EFR47197.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
          Length = 179

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 3/157 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ +P+PILR+ S  +E  +  +  L+D+M E M  + G+GLAA+Q+G+  R++VI
Sbjct: 8   ATLAILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVI 67

Query: 62  D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +    +D    K  ++ +        +D   ++EGCLS+P++   VKR   ++V Y D  
Sbjct: 68  NLPRDEDKQQYKEDLLEVINPTFLTQEDDIEWEEGCLSVPEFYESVKRFNKVSVAYKDRF 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +I+ A+G LA  LQHE+DHLNGILF+D L  L+R
Sbjct: 128 GNDKILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 164


>gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
 gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
          Length = 162

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++++ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQIAEPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D       +  INP+I          +  CLS+P Y  DV+R   ITV+ +D + +
Sbjct: 61  V---DDHAGSGLIALINPEITHAEGSQVGPEG-CLSVPGYFGDVERFDKITVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|319442115|ref|ZP_07991271.1| peptide deformylase [Corynebacterium variabile DSM 44702]
          Length = 166

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    + +F DP+LR V+  I+   +  +  L+++M E M +  G+GLAA Q+GV  R+ 
Sbjct: 1   MTALDIRLFGDPVLRTVAENIDDPTDPTLRTLVEDMYETMDAAGGVGLAANQVGVTRRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D             +NP       +    +EGCLS+PD   DV R+A + +  +  + 
Sbjct: 61  VYDCDGDRG-----HIVNPVWEAVGAETQTGREGCLSVPDAGGDVTRAATVHLTGVTVDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           +       GL+A C+QHE DHL+G+++   +    R  + 
Sbjct: 116 EEVDREVTGLMARCVQHETDHLDGVMYFQRMESGTRREVM 155


>gi|117621144|ref|YP_856896.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562551|gb|ABK39499.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 166

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L   +  +E I + +  LID+MLE +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAMLDILTVPDPRLGIKAEQVEDI-AAVQGLIDDMLETLYATDNGIGLAATQVGRKEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +   +      +    +T   + ++ QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  IIDLSEKRDQPL---VLINPQVTSGTEPALGQEGCLSVPDYYADVERYGSVVVSALDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +   LA  +QHE+DHL G +FID+LS LKR M  KK+ K ++
Sbjct: 117 VPITVKSSDFLAIVMQHEIDHLQGKVFIDYLSPLKRKMALKKVKKHLK 164


>gi|307637482|gb|ADN79932.1| Peptide deformylase [Helicobacter pylori 908]
 gi|325996072|gb|ADZ51477.1| Peptide deformylase [Helicobacter pylori 2018]
 gi|325997668|gb|ADZ49876.1| Peptide deformylase [Helicobacter pylori 2017]
          Length = 174

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      + +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147]
          Length = 177

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L  V++P+E  N  ++  L+ +M E M+  +G GLAA Q+GV  ++++
Sbjct: 1   MIREILKMGDQRLLEVAKPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510]
 gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510]
          Length = 190

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 4/166 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   P+    +PILR++++PI +  +  I  L  +M+  M    G+GLAA Q+    R++
Sbjct: 1   MPVLPIARMGNPILRQIAQPIADPTDPAIARLAADMIATMLDAPGVGLAAPQVSESCRII 60

Query: 60  VID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V      +         V +NP I   +DD ++  EGCLSIP  R  V R   I  R   
Sbjct: 61  VFRVPADRGEGEEVANTVLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRHTRIRYRGHG 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +       A G  A  +QHE+DHL+G+L++D +  L+  + T++M
Sbjct: 121 LDGARIEREASGFHARVVQHEVDHLDGVLYLDRMDDLRLLVCTEEM 166


>gi|222086074|ref|YP_002544606.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221723522|gb|ACM26678.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 164

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPDP+L+    P+   +  + +L  ++++ M +  G+G+ A  IGVL R+ V
Sbjct: 1   MSVRSIIRFPDPLLKTTCAPVTIFDDGLHSLAIDLVDTMRAAPGVGITAAHIGVLRRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+L      +    +INP+I  FS++   + EG +S+P    +V R   I  RY D + +
Sbjct: 61  IELSREDGIRT---YINPEITWFSEETMRHMEGSVSMPGITDEVVRPRAIRFRYQDIDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+G+ ++  LS+LKRD + KK  K
Sbjct: 118 AHEAAAEDFLAICIQHEVDQLDGLFWLQRLSKLKRDRLVKKWEK 161


>gi|153010428|ref|YP_001371642.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151562316|gb|ABS15813.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 166

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PD  LR V+ P+ + +SD+  L  ++L+ M +  GIG+ A  +G+  RLVV
Sbjct: 1   MTVRPIVSYPDKRLRAVAEPVTQFDSDLQELGTDLLDTMRAAPGIGITAPHVGISKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  ++NP+I+  SD+   +QEG +S+P    DV+R A I +RY D +  
Sbjct: 61  LELPTE---LTPKFYVNPEIVWASDEKIHHQEGSVSMPGVVDDVERHARIKIRYQDLSGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q   ++GLLA C QHE+D L+GI +I  LSRL+RD + K+  K  + R
Sbjct: 118 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLIKRFEKSQRQR 166


>gi|256789194|ref|ZP_05527625.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396573|sp|Q9FCA2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
          Length = 179

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA Q+G   R+ V D
Sbjct: 13  VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 73  CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G ++ D L+  +   + +++++
Sbjct: 133 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVAR 174


>gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 217

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA Q+G   R+ V D
Sbjct: 51  VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 110

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 111 CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 170

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G ++ D L+  +   + +++++
Sbjct: 171 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVAR 212


>gi|295094723|emb|CBK83814.1| peptide deformylase [Coprococcus sp. ART55/1]
          Length = 155

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+V RP+EK++   + LID+M + MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNIRYDGDDILRKVCRPVEKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +   +IT SD     +EGCLS+P     V R   +  +  D N +
Sbjct: 61  IDVGDDNPL-----CLINPVITESDGEQTGEEGCLSLPGKFGTVTRPMHVICKAFDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +GLLA  + HELDHL+G L+ D +  
Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKDLVED 147


>gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008]
 gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008]
          Length = 162

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQVAEPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D       +  INP+I          +  CLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  V---DDQSGSGLIALINPEITHAEGSQVGPEG-CLSVPGYFGDVERFNKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|227505915|ref|ZP_03935964.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
 gi|227197437|gb|EEI77485.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
          Length = 206

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 23/186 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ +   + ++  LI +M E M    G+GLAA Q+G+  RL
Sbjct: 1   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMYETMDVAHGVGLAANQVGINKRL 60

Query: 59  VVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
            V    D                      NP++  +        D     EGCLS+P   
Sbjct: 61  FVYHCPDTDGPEGTELPADKAGMRKGCVINPVLETSEIPEGMPADDGSEDEGCLSVPGEG 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
               R+ +  V   D +     I   G  A  LQHE  HL+G ++ D L+        ++
Sbjct: 121 FPTGRADWARVTGKDEHGNDISIEGYGFFARMLQHETGHLDGFVYTDVLTG----RFKRQ 176

Query: 162 MSKLVQ 167
             K+++
Sbjct: 177 AKKIIK 182


>gi|227495080|ref|ZP_03925396.1| peptide deformylase [Actinomyces coleocanis DSM 15436]
 gi|226831532|gb|EEH63915.1| peptide deformylase [Actinomyces coleocanis DSM 15436]
          Length = 163

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MTYREIRVIGDPILRTPCEWITDIDDKVKGLVEDLLENVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +   +     ++    EGCLS+P      KR+ +  V  ++ + +
Sbjct: 61  WNIDGDIGYVLNPKLVEASMEE---EYQDGDEGCLSVPGLWFPTKRAWYARVEGINLDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I+  + L+A CLQHE DHL G+L++D L R  R    K++ +
Sbjct: 118 KIIVEGEELMARCLQHECDHLEGMLYLDRLDRAMRRKAMKEVRE 161


>gi|260427470|ref|ZP_05781449.1| peptide deformylase [Citreicella sp. SE45]
 gi|260421962|gb|EEX15213.1| peptide deformylase [Citreicella sp. SE45]
          Length = 164

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+E I  +I  +  +M++ M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARLCIPWPDKRLRTPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +           NP+++  S     + E   ++P   A + R   + VR+++   +
Sbjct: 61  VDASEKRGEAV--RMANPEVLHASVKLRSHDEASPNLPGVWASIDRPRAVAVRFLNAEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +     GL AT +QH++DHLNG ++ DHLS++KRDM+ ++  K
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRMYFDHLSKVKRDMLLRRAKK 162


>gi|307329984|ref|ZP_07609136.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306884360|gb|EFN15394.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 212

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           + +    + ILRR  R + +    ++  LID+M   MY  +G GLAA Q+ V  RL V D
Sbjct: 26  RRITEVGEEILRRSCREVTEFGTPELSALIDDMFLTMYIAEGAGLAANQVDVELRLFVYD 85

Query: 63  LQDHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D    ++    INP   +            EGCLS+P  R DV R+    VR +D + 
Sbjct: 86  CPDDNGVRHVGHIINPVLDQPDPAERLLIEDAEGCLSVPGARMDVPRTDRTVVRGVDKDG 145

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +I   G  A CLQHE DHL+G L+ID LS+  R    ++M+ L + 
Sbjct: 146 NPLVIEGTGYFARCLQHEADHLSGHLYIDRLSKRDRKDALRQMTDLHEQ 194


>gi|72162832|ref|YP_290489.1| peptide deformylase [Thermobifida fusca YX]
 gi|71916564|gb|AAZ56466.1| peptide deformylase [Thermobifida fusca YX]
          Length = 185

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P+V+F DP+L   + PI   N     LI ++++ + +    G+AA QIGV  R   
Sbjct: 1   MTKRPIVLFGDPVLSTPAAPITTFNRHTEALIRDLMDTVDAPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +          V     +    +      EGCLS+P       R+    V+ +D   +
Sbjct: 61  YRVDGQIG----YVINPEIVELSEEIQEDGNEGCLSVPGLWYPTPRARRAVVKGVDLRNE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   G++A CLQHE DHL G L++D L    R    +++ +
Sbjct: 117 PVVVAGTGVMARCLQHETDHLAGKLYLDRLPPETRRAAMREIRR 160


>gi|283955379|ref|ZP_06372878.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793139|gb|EFC31909.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414]
          Length = 676

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 96/157 (61%), Gaps = 3/157 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  + K ++++ NL+D+M E M +++G+GLAA+Q+ V  R++++
Sbjct: 1   MVRKIITYPNPKLFLSSETVNKFDAELHNLLDDMYETMIASNGVGLAAIQVDVPLRVLLV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +    +        INP+II   ++     EGCLS+PD+  +VKR   + ++Y D  
Sbjct: 61  NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHVLLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
 gi|123766806|sp|Q2RK25|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
          Length = 155

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++   DP+LR  S+P+ KI S++  L+DN+ + MY   G+GLAA QIGVL R++V
Sbjct: 1   MAIHKILTLGDPLLREKSQPVRKITSNVWKLLDNLADTMYDAPGVGLAAPQIGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          I               EGCLSIP  + +V R+A +TVR +D + +
Sbjct: 61  VDVGEGLTELINPEVIAASGEEV------GAEGCLSIPGAQGEVPRAAVVTVRGLDRHGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I A+GL A  LQHE+DHL+GILFID + R 
Sbjct: 115 VREIRAEGLYARALQHEIDHLDGILFIDKVVRW 147


>gi|83941566|ref|ZP_00954028.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847386|gb|EAP85261.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 155

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L  V  P+     +I  LI +M E MY+  G GLAA Q+G   R+ V
Sbjct: 1   MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFETMYAAPGRGLAAPQVGRTERIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D         P+  INP+I++ SD  ++ +EGCLSIP    D+ R+  +T+R+ D +  
Sbjct: 61  FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  G  A  +QHE DHL+GI+  D +
Sbjct: 120 THERKFTGAEAVIVQHEYDHLDGIVIYDRV 149


>gi|126209175|ref|YP_001054400.1| peptide deformylase [Actinobacillus pleuropneumoniae L20]
 gi|165977146|ref|YP_001652739.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|126097967|gb|ABN74795.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
 gi|165877247|gb|ABY70295.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 154

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
             P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ ID++     +     + 
Sbjct: 2   CEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIEGDKTNQV---VLI 58

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
              I  S   +  +EGCLSIP +RA V R   + V+ ++   +  I  ADGL A C+QHE
Sbjct: 59  NPEILESCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYEADGLFAICIQHE 118

Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 119 IDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 149


>gi|170748510|ref|YP_001754770.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170655032|gb|ACB24087.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 165

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV+FPDP L R + P++     +  L D++ + + +   IGL A  IGV  RLVV
Sbjct: 1   MPARPLVLFPDPRLTRPAEPVDAFGPSLQALADDVRDTLMAESAIGLTAPHIGVPARLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +  +   +   +++NP +   S + + + EG +S+P  R  + R A I + Y D +  
Sbjct: 61  VRMSPNESAR---IYVNPVVSWASPETATHDEGSVSMPGVRERIARPARIRLSYRDLDGS 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +    +G  A  LQHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 AREAETEGFPAAVLQHEIDQLDGVFWIARLSRLKRERLLKRFEK 161


>gi|56417231|ref|YP_154305.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. St. Maries]
 gi|222475595|ref|YP_002564012.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Florida]
 gi|254995399|ref|ZP_05277589.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Mississippi]
 gi|255003586|ref|ZP_05278550.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Puerto Rico]
 gi|255004717|ref|ZP_05279518.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Virginia]
 gi|56388463|gb|AAV87050.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. St. Maries]
 gi|222419733|gb|ACM49756.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Florida]
          Length = 185

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 104/184 (56%), Gaps = 17/184 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M   PL+  PD  L   S  +        +  L +NMLE MY   GIGLAAVQ+GV  R+
Sbjct: 1   MAVLPLLTLPDSRLSLCSEEVHAADFGPQLETLTNNMLETMYHNKGIGLAAVQVGVHKRI 60

Query: 59  VVID---------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V+D               + ++     P+V +NP ++  S+  +  +EGCLS+P YR  
Sbjct: 61  CVVDLEYGSDRYEIPEDDGVGEYRATCGPVVILNPIVVEESEQLATMEEGCLSVPGYRET 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V+R   I V+Y D N Q + I A GLLA CLQHELDHLNG++F+  +S+LKRDM+ +K+ 
Sbjct: 121 VQRPERIVVQYTDLNRQTKYIKACGLLARCLQHELDHLNGVVFLQRVSKLKRDMVMEKIR 180

Query: 164 KLVQ 167
           K  +
Sbjct: 181 KASK 184


>gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|39930841|sp|Q7V3K7|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 201

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR  ++ I K+++ I NL  +ML+ MY+  GIGLAA QIG+   L+VID+
Sbjct: 31  LEIYKLGDDVLRENAKRISKVDNSIRNLAKDMLQSMYAAKGIGLAAPQIGIKKELLVIDV 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  +    + Y+EGCLSIP    +V R + I +R+ D   + + 
Sbjct: 91  NFEDAAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGLLA C+QHE+DHLNG+LF+D ++   ++ + K++ K
Sbjct: 151 MKADGLLARCIQHEMDHLNGVLFVDRVTS--KEDLNKELIK 189


>gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 196

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/146 (41%), Positives = 90/146 (61%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ I ++N +I  L  +ML+ MYS DGIGLAA Q+G+  R++V+DL  
Sbjct: 21  IYRMGDKVLRQPAKRISQVNDEIRQLARDMLQTMYSFDGIGLAAPQVGIPKRMIVVDLYP 80

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+I  +  +    QEGCLSIP    +V R   I V + D   + + + 
Sbjct: 81  DKPEVPPLVLINPEIREYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLR 140

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           AD LLA  +QHE+DHLNG+LF+DH+ 
Sbjct: 141 ADDLLARVIQHEIDHLNGVLFVDHVE 166


>gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578]
          Length = 165

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  LR +++P+  +NSDI   + +M E MY   GIGLAA Q+    R++VI
Sbjct: 1   MILDILKYPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +  ++  P   INP+II  S +    +EGCLS+PDY  +VKR+  I V  ++ +   
Sbjct: 61  DISEDCNQ--PFCLINPEIIEKSGEIEW-EEGCLSVPDYYENVKRANKIKVCALNEHGNT 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A+ +LA C+QHE+DHLNGILF+DHLS+LK+  + KK  K  +
Sbjct: 118 FDIEANEMLAICIQHEMDHLNGILFVDHLSKLKQKRLQKKAEKQDK 163


>gi|183598657|ref|ZP_02960150.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827]
 gi|188020843|gb|EDU58883.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827]
          Length = 167

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+  I +    LID++L+ MY + +GIGLAA QIG    ++
Sbjct: 1   MAVRAIIEIPDERLRVKCDPVTDIAAA-QPLIDDLLDTMYSTDNGIGLAATQIGATLSVM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ ++  R  PMVF+NP+II    + S  +  CLS+P+  ADV R   + V+ +D + 
Sbjct: 60  VIDISEN--RDQPMVFVNPEIIESEGETSYQEG-CLSVPEIYADVARFKRVKVKALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +  I  +D  LA  +QHE+DHL+G +F+DHLS LKR+M+ KK+ K  +LR
Sbjct: 117 KAFITDSDEFLAIVMQHEIDHLHGKVFLDHLSTLKRNMLLKKLKKQQRLR 166


>gi|254451672|ref|ZP_05065109.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198266078|gb|EDY90348.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 165

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +P   LR  +  + +I  DI  L D M+  M +  G+GLAA Q+GV  RL V
Sbjct: 1   MPHRPFIPWPAKALRTPAVEVTEITDDIRALWDEMINAMDAMPGVGLAAPQLGVSLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D           NP I+  S +  +++E   ++P   A ++R   +TVR+M+    
Sbjct: 61  VDASDKRGSAI--RMANPTILHASHELRLHEEASPNLPGLSASLERPRAVTVRFMNDAGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL+G ++ D LSR KRDM+ KK  KL
Sbjct: 119 YDRRDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163


>gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium
           HF4000_04C13]
          Length = 180

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +  DP+LRR +  +  ++  ++ L D+M   MY   GIGLAA Q+GV  R  V
Sbjct: 1   MAPHQIRLIGDPVLRRPATDVTDVDGALVRLTDDMFTTMYEAPGIGLAAPQVGVQKRFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  + A        I             ++EGCLS+PD   ++ R   + +  +D +  
Sbjct: 61  YDHGEGAGVILNPRIIESDGE------WTFEEGCLSVPDLTWEITRPKQVHLVGVDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I AD + A   QHE+DHL+G+L +DHL   +     + + ++   R
Sbjct: 115 EVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQAREARRALREMTMSR 163


>gi|294141147|ref|YP_003557125.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293327616|dbj|BAJ02347.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 163

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R +R +E I+S +   ID++LE +Y   DGIGLAA Q+G  + ++
Sbjct: 1   MAVLDILTIPDERLKRKARTVEDIDS-VQGFIDDLLETLYDTEDGIGLAATQVGSEHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +      +    I  +    + +EGCLSIP YRA V RS  +TV+ +D   
Sbjct: 60  VIDLSEERDQPQ---VLINPEIVATQGDFIGEEGCLSIPGYRAKVARSEQVTVKALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   I  D  LA  LQHE+DHL GI+F DHLS+LK+ +  KK+ K
Sbjct: 117 KPFEIETDTFLAIVLQHEMDHLQGIVFTDHLSKLKQQIALKKVKK 161


>gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales
           bacterium]
          Length = 166

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV   ++   +PILR VS  +E  + D+   +  + + MY  DG+GLAA Q+ V  R+ V
Sbjct: 1   MVGMKVIHIGNPILRNVSESVEVFDDDLRAFVKELSKTMYVEDGVGLAAPQVAVSRRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D          INP+I++ SD+    +EGCLSIP   AD+ R + + + Y D   Q
Sbjct: 61  YDPGDGLRV-----VINPEILSKSDEIVKMEEGCLSIPGIYADIDRPSAVRIHYQDEYGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           H         A  +QHE DHL G+LF+D+LS  KR M+  K++++++ 
Sbjct: 116 HHEEDLTEYPARIVQHESDHLEGVLFVDYLSASKRAMLKPKLNQIIKE 163


>gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424]
 gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424]
          Length = 176

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M +   +    +PILR+ ++ +E I    +  LID+++    S +G+G+AA Q+   YRL
Sbjct: 1   MTQDLEIAQLGNPILRQNAQSVENITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRL 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++         +A   NP   INP+II+ S +     EGCLS+P  R  V R   ITV 
Sbjct: 61  FIVASRPSPRYPNAPEMNPTPMINPRIISHSPEKVKGWEGCLSVPGLRGLVPRYHTITVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y+D     Q       +A   QHELDHL+GILF+D L   +     ++  K++
Sbjct: 121 YLDRYGNLQRQELTDFVARIFQHELDHLDGILFVDRLESSQDLYTEEEYQKII 173


>gi|163743814|ref|ZP_02151187.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382963|gb|EDQ07359.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
          Length = 169

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L   ++PI     D+  L  +ML+ MY+  G GLAA Q+GVL RL V
Sbjct: 1   MAVLPIRAWPDPVLSTPAKPIATP-RDVETLARDMLDTMYAAPGRGLAAPQVGVLIRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++P+V +NP I+  S + +   EGCLSI     +V R A++ + + D    
Sbjct: 60  MDTTWKEGTRDPLVCVNPDIVALSAETATMSEGCLSIKGVSLEVTRPAWVDLAWSDLQGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                 +G  A C+QHE DHL G +  D +S 
Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151


>gi|50955168|ref|YP_062456.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951650|gb|AAT89351.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 163

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ +S P+ +++  + +L+ ++++ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTLSEPVGELDESVRSLVQDLVDTVLPPGRAGVAAPQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S +  +  EGCLS+P       R  F  VR +D +  
Sbjct: 61  YNVDGEVG-----YILNPELVEVSGEPELVDEGCLSVPGLWFKTVRYPFARVRGIDLDGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G++A  LQHE DHL G L++D L R  R    K++ +
Sbjct: 116 EIELSGTGVMAQALQHETDHLEGKLYLDRLDRGSRREAMKQIRE 159


>gi|149922552|ref|ZP_01910982.1| peptide deformylase [Plesiocystis pacifica SIR-1]
 gi|149816579|gb|EDM76074.1| peptide deformylase [Plesiocystis pacifica SIR-1]
          Length = 177

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PDP LR  +  +  +N +I +L+ +M + MY+ +  G+AA+Q+G L R+ +
Sbjct: 1   MAVLEIVKYPDPRLREDTFDVADVNDEIRSLVRDMTDTMYALNAAGIAAIQVGRLERIFL 60

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID +        +P+VFINP+++       V +EGCLS PD   DVKR  +  VR +D N
Sbjct: 61  IDGKVAGGDENSDPLVFINPEVVETGKGQVVAEEGCLSFPDVFVDVKRPRWAKVRALDVN 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +  D L    LQHE DHL G L ID +  +K++MI +KM +
Sbjct: 121 GESFEVDGDELFGRALQHEHDHLTGKLMIDLVGMVKKEMIKRKMKR 166


>gi|307128595|ref|YP_003880625.1| peptide deformylase [Candidatus Sulcia muelleri CARI]
 gi|306483057|gb|ADM89927.1| peptide deformylase [Candidatus Sulcia muelleri CARI]
          Length = 172

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 98/162 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++I+ +PILR+    I++   +I  LI NM + MY   GIGL+A QIG+  RL +I
Sbjct: 1   MILPILIYGNPILRKKCIEIDQSYQNINLLIKNMYDTMYKAKGIGLSAPQIGLSIRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  +   +K   VFINPKII       + +EGCLSIP+   ++KR   + + Y D N + 
Sbjct: 61  EYNNFYKKKFKKVFINPKIIKNYGYDLISKEGCLSIPNIIENIKRKNNLIIEYYDENWKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + +GLL+  +QHE DH++G LFIDH+S +K  +I  K+ 
Sbjct: 121 YRQHFNGLLSIIIQHEYDHIDGKLFIDHISDMKNILIKNKLK 162


>gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605]
 gi|123756848|sp|Q3AHC4|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605]
          Length = 201

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ +R I K+N  +  L  +ML  MY+  GIGLAA Q+G+  +L+VIDL
Sbjct: 31  LEIHTLGDEVLRQPARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + 
Sbjct: 91  DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGL+A C+QHE+DHLNG+LF+D ++   +D + K++ +
Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELKE 189


>gi|312127907|ref|YP_003992781.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777926|gb|ADQ07412.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108]
          Length = 166

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A           +            EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGAIELVNPEIEQVEGSAVDV------EGCLSVPNVWGEVERPQKVVVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|256587795|gb|ACU98927.1| polypeptide deformylase [Propionibacterium jensenii]
          Length = 200

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + +P+L   ++P+   + D+  LI +M     + DG+GLAA Q+G+   L + 
Sbjct: 20  TLRRVTRWSEPVLHASTQPVTDFDDDLHELIRDMFVTNAAADGVGLAATQVGLSLSLFIY 79

Query: 62  DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +  D     +     NP+         +     EGCLS P     + R    T    D  
Sbjct: 80  NCPDDDGVVHKGAICNPQVTLPTGRDRNLVSVDEGCLSWPGGFQPLARPDLATCTGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                +   G  A CLQHE DH NGI+F D LS+  R  + ++   L
Sbjct: 140 GTPLSVTGTGYFARCLQHETDHCNGIVFGDRLSKRSRRKLDEQHENL 186


>gi|50843003|ref|YP_056230.1| polypeptide deformylase [Propionibacterium acnes KPA171202]
 gi|289426491|ref|ZP_06428234.1| peptide deformylase [Propionibacterium acnes SK187]
 gi|289428707|ref|ZP_06430390.1| peptide deformylase [Propionibacterium acnes J165]
 gi|295131074|ref|YP_003581737.1| peptide deformylase [Propionibacterium acnes SK137]
 gi|50840605|gb|AAT83272.1| polypeptide deformylase [Propionibacterium acnes KPA171202]
 gi|289153219|gb|EFD01937.1| peptide deformylase [Propionibacterium acnes SK187]
 gi|289158105|gb|EFD06325.1| peptide deformylase [Propionibacterium acnes J165]
 gi|291377293|gb|ADE01148.1| peptide deformylase [Propionibacterium acnes SK137]
 gi|313763558|gb|EFS34922.1| peptide deformylase [Propionibacterium acnes HL013PA1]
 gi|313773497|gb|EFS39463.1| peptide deformylase [Propionibacterium acnes HL074PA1]
 gi|313793950|gb|EFS41974.1| peptide deformylase [Propionibacterium acnes HL110PA1]
 gi|313801337|gb|EFS42588.1| peptide deformylase [Propionibacterium acnes HL110PA2]
 gi|313807983|gb|EFS46464.1| peptide deformylase [Propionibacterium acnes HL087PA2]
 gi|313811548|gb|EFS49262.1| peptide deformylase [Propionibacterium acnes HL083PA1]
 gi|313813394|gb|EFS51108.1| peptide deformylase [Propionibacterium acnes HL025PA1]
 gi|313816738|gb|EFS54452.1| peptide deformylase [Propionibacterium acnes HL059PA1]
 gi|313819551|gb|EFS57265.1| peptide deformylase [Propionibacterium acnes HL046PA2]
 gi|313822126|gb|EFS59840.1| peptide deformylase [Propionibacterium acnes HL036PA1]
 gi|313823640|gb|EFS61354.1| peptide deformylase [Propionibacterium acnes HL036PA2]
 gi|313825965|gb|EFS63679.1| peptide deformylase [Propionibacterium acnes HL063PA1]
 gi|313829432|gb|EFS67146.1| peptide deformylase [Propionibacterium acnes HL063PA2]
 gi|313831289|gb|EFS69003.1| peptide deformylase [Propionibacterium acnes HL007PA1]
 gi|313834899|gb|EFS72613.1| peptide deformylase [Propionibacterium acnes HL056PA1]
 gi|313839941|gb|EFS77655.1| peptide deformylase [Propionibacterium acnes HL086PA1]
 gi|314919327|gb|EFS83158.1| peptide deformylase [Propionibacterium acnes HL050PA1]
 gi|314920764|gb|EFS84595.1| peptide deformylase [Propionibacterium acnes HL050PA3]
 gi|314924710|gb|EFS88541.1| peptide deformylase [Propionibacterium acnes HL036PA3]
 gi|314930643|gb|EFS94474.1| peptide deformylase [Propionibacterium acnes HL067PA1]
 gi|314954401|gb|EFS98807.1| peptide deformylase [Propionibacterium acnes HL027PA1]
 gi|314957515|gb|EFT01618.1| peptide deformylase [Propionibacterium acnes HL002PA1]
 gi|314962119|gb|EFT06220.1| peptide deformylase [Propionibacterium acnes HL002PA2]
 gi|314963697|gb|EFT07797.1| peptide deformylase [Propionibacterium acnes HL082PA1]
 gi|314968475|gb|EFT12573.1| peptide deformylase [Propionibacterium acnes HL037PA1]
 gi|314974164|gb|EFT18260.1| peptide deformylase [Propionibacterium acnes HL053PA1]
 gi|314976545|gb|EFT20640.1| peptide deformylase [Propionibacterium acnes HL045PA1]
 gi|314978999|gb|EFT23093.1| peptide deformylase [Propionibacterium acnes HL072PA2]
 gi|314984364|gb|EFT28456.1| peptide deformylase [Propionibacterium acnes HL005PA1]
 gi|314986554|gb|EFT30646.1| peptide deformylase [Propionibacterium acnes HL005PA2]
 gi|314990913|gb|EFT35004.1| peptide deformylase [Propionibacterium acnes HL005PA3]
 gi|315079547|gb|EFT51540.1| peptide deformylase [Propionibacterium acnes HL053PA2]
 gi|315081224|gb|EFT53200.1| peptide deformylase [Propionibacterium acnes HL078PA1]
 gi|315083591|gb|EFT55567.1| peptide deformylase [Propionibacterium acnes HL027PA2]
 gi|315087107|gb|EFT59083.1| peptide deformylase [Propionibacterium acnes HL002PA3]
 gi|315089281|gb|EFT61257.1| peptide deformylase [Propionibacterium acnes HL072PA1]
 gi|315095304|gb|EFT67280.1| peptide deformylase [Propionibacterium acnes HL038PA1]
 gi|315099184|gb|EFT71160.1| peptide deformylase [Propionibacterium acnes HL059PA2]
 gi|315100332|gb|EFT72308.1| peptide deformylase [Propionibacterium acnes HL046PA1]
 gi|315106855|gb|EFT78831.1| peptide deformylase [Propionibacterium acnes HL030PA1]
 gi|315108984|gb|EFT80960.1| peptide deformylase [Propionibacterium acnes HL030PA2]
 gi|327328434|gb|EGE70196.1| peptide deformylase [Propionibacterium acnes HL096PA2]
 gi|327329700|gb|EGE71456.1| peptide deformylase [Propionibacterium acnes HL096PA3]
 gi|327334216|gb|EGE75930.1| peptide deformylase [Propionibacterium acnes HL097PA1]
 gi|327444220|gb|EGE90874.1| peptide deformylase [Propionibacterium acnes HL043PA2]
 gi|327444900|gb|EGE91554.1| peptide deformylase [Propionibacterium acnes HL043PA1]
 gi|327446386|gb|EGE93040.1| peptide deformylase [Propionibacterium acnes HL013PA2]
 gi|327452026|gb|EGE98680.1| peptide deformylase [Propionibacterium acnes HL092PA1]
 gi|327454936|gb|EGF01591.1| peptide deformylase [Propionibacterium acnes HL087PA3]
 gi|327457777|gb|EGF04432.1| peptide deformylase [Propionibacterium acnes HL083PA2]
 gi|328752375|gb|EGF65991.1| peptide deformylase [Propionibacterium acnes HL020PA1]
 gi|328755230|gb|EGF68846.1| peptide deformylase [Propionibacterium acnes HL087PA1]
 gi|328758290|gb|EGF71906.1| peptide deformylase [Propionibacterium acnes HL025PA2]
 gi|328760021|gb|EGF73603.1| peptide deformylase [Propionibacterium acnes HL099PA1]
          Length = 200

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + + +L   +RP+ + + D+  LI +M   M + DG+GLAA Q+GV   L V 
Sbjct: 20  SLRRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118
              D  +  +   F NP +          +        +      + R    T    D  
Sbjct: 80  ACPDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +   G  A CLQHE DH NGI+F D LS+  R  + ++
Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182


>gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales
           bacterium HF0200_07G10]
          Length = 174

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++++PD  L +VSRP+++ + DI   + ++ E   S    +G+AA Q+G   R++
Sbjct: 1   MAVLDILVYPDKRLTQVSRPVDEFSRDIKTFVKDLEETFRSYPGCVGIAAPQVGRFERII 60

Query: 60  VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++D+       N    +     IT  +  S+ +EGCLS+PDY   V+R+  I +  ++ N
Sbjct: 61  LVDVSQKPQHVNHGFLVLINPKITSYEGNSLGREGCLSVPDYTGKVERAKSIALEALNEN 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              Q +   G  A  +QHE+DHL+G LFID L   +R+ + K++ 
Sbjct: 121 GDKQELKLSGYEARAVQHEIDHLDGKLFIDRLVG-RRNSLNKRIE 164


>gi|271968555|ref|YP_003342751.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270511730|gb|ACZ90008.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 162

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+LR  + P+   + D+  LID M + MY+  G+GLA  QIGV  R+ V D
Sbjct: 1   MRDIRVVGDPVLRTPAEPVVDFDRDLRRLIDEMFDAMYAAQGVGLAGPQIGVSKRVFVYD 60

Query: 63  L-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                 H  NP++ ++       ++  +   G  +     A   R+A +TVR +D   + 
Sbjct: 61  CSSRKGHLINPVLTVDDDAEILDEEGCLSVPGRDTGTPIYARTPRAAGVTVRGLDRLGRP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             I A GLLA C QHE DHL G+L++D L++     + 
Sbjct: 121 VQIRARGLLARCFQHETDHLEGMLYVDRLAKDAARKVL 158


>gi|308535392|ref|YP_002140756.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|308052737|gb|ACH40960.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 184

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 96/168 (57%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59
           M  + +V +P+ IL+   + +E+I+  +  L+D++++ M++  G    A  QIGV  R+ 
Sbjct: 17  MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMHAGPGSVGVASPQIGVSLRVC 76

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           VID+  + H K+       +    I      +V +EGC+S+PDY  DV+RS  +T+R+ +
Sbjct: 77  VIDVSKNRHGKDNNHGLLLMINPEILARSGAAVMREGCMSVPDYTGDVERSTELTLRFTE 136

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   A G  A  +QHELDHL+G+LF+D ++ LK  +  +K  K
Sbjct: 137 PDGTVREFEASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 184


>gi|257056762|ref|YP_003134594.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256586634|gb|ACU97767.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 166

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV + L  F DP+L+  + P+   +  I  L+D++L+ +      GLAA QIGV  R   
Sbjct: 1   MVMRDLRYFGDPVLKSPADPVTTFDDSIRALVDDLLDTVNLPGRAGLAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S++     EGCLS+P       R+   TV+ +D   +
Sbjct: 61  YNVDGSIG-----YVLNPELVELSEEKHEVMEGCLSLPGLSFTTVRAQRATVKGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GLLA CLQHE+DHL+G+L+ID L   +R    ++  
Sbjct: 116 PVTVSGSGLLAQCLQHEVDHLDGLLYIDRLEPQQRKQALREAR 158


>gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 171

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +  P+VI+ +PILR+    I+  +   +I  LI +M E ++   GIGLAA QIG   RL 
Sbjct: 1   MVLPIVIYGNPILRKKCLDIDLCSCKKEINQLIKDMFETIHQAKGIGLAAPQIGKNIRLF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +++   +   K   VFIN KI+        + EGCLSIP     VKR + + + Y D N 
Sbjct: 61  IVET-PYLDGKYKEVFINAKILKIHGKEYKFNEGCLSIPGIMGYVKRKSNVLIEYYDHNW 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           + Q     G+ A  + HE DHL+G LFID+ S  ++  I KK+
Sbjct: 120 KKQKKTLTGICARVILHEYDHLDGKLFIDYFSSTRKKRIEKKL 162


>gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 202

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++++PDP LR  ++ I+  +  +  L++ ML+VMY TDG+GLAA Q+GV  RL+V + 
Sbjct: 11  LEVILYPDPRLRAKNKFIKVFDDKLQQLVNEMLDVMYKTDGVGLAAPQVGVNVRLMVYNP 70

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP----------DYRADVKRSAFITVR 113
                     V +NP+I+ +     ++ EGCLS P             A+V+R   + + 
Sbjct: 71  SGERGSGKEYVLVNPRIVKYGKSRDLFDEGCLSFPVLERGPNQSLTIEAEVERPKSVRID 130

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             D   +   I      A   QHE DHL GIL+ D ++    D I  ++ KL +L +
Sbjct: 131 AQDIKGKKFSINLKDFQARIFQHEYDHLEGILYFDRMTPEVLDTIRPELEKLEKLYE 187


>gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|296158911|ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400]
 gi|295890786|gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 177

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  L+ +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGHNERYPDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160


>gi|329890845|ref|ZP_08269188.1| peptide deformylase [Brevundimonas diminuta ATCC 11568]
 gi|328846146|gb|EGF95710.1| peptide deformylase [Brevundimonas diminuta ATCC 11568]
          Length = 190

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 109/188 (57%), Gaps = 20/188 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  + ++   +     IL+ V+ P+E  +   +  L+D+MLE MY   GIGLAA QIG L
Sbjct: 1   MAIRRILTIDNAADLAILKTVAAPVEGGVTDAVRALMDDMLETMYDAPGIGLAAPQIGEL 60

Query: 56  YRLVVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
            R+VV+DL D                  R+NP  F+NP+I+  S++   Y+EGCLS+P Y
Sbjct: 61  TRVVVMDLGDKPVEGASDEPQTEEEALERRNPRFFVNPEILWSSEEMFSYEEGCLSVPTY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V+R A + VRYM+   +      +GL A C QHELDHLNG+LFIDHLSRL+RD    
Sbjct: 121 YDSVERPARVRVRYMNYQGETIEEEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAVS 180

Query: 161 KMSKLVQL 168
           K+ K  ++
Sbjct: 181 KVKKHARM 188


>gi|294790924|ref|ZP_06756082.1| peptide deformylase [Scardovia inopinata F0304]
 gi|294458821|gb|EFG27174.1| peptide deformylase [Scardovia inopinata F0304]
          Length = 162

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDPILR V  PI  I   I +L+ ++ + +      GL+A QIGV  R   
Sbjct: 1   MSIREIRCVPDPILRTVCDPITTITPAIRSLVRDLTDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++                +  +       EGCLS+P      +R+ +  V  +D N  
Sbjct: 61  FNIEGKVDYIL------NPRLVKTSGEQYGDEGCLSVPGLWYKTRRADYARVEGIDLNGH 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +++   GL+   LQHE DHL+G +++D L + +R    + M    + 
Sbjct: 115 KKVLEGHGLMGRMLQHECDHLDGHVYLDRLEKEERRAALRYMRSRQKN 162


>gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424]
 gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424]
          Length = 187

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ I K++  +  L   ML+ MYS++GIGLAA Q+ V  +L+VID 
Sbjct: 17  LEIHYLGDRVLRQPAKRIAKVDESVRQLAKEMLQTMYSSNGIGLAAPQVAVNKQLLVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INP+I   S +   ++EGCLSIP    DV R   I V Y D + + + 
Sbjct: 77  EPDNPANPPLILINPQITQSSQELCQFEEGCLSIPGVYLDVVRPKVIEVSYKDESGRPKK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
           + A  LLA  +QHE+DHLNGI+F+D +
Sbjct: 137 LKATDLLARVIQHEMDHLNGIMFVDRV 163


>gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973]
 gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973]
          Length = 186

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V++ I     D+  LI NM E M S+DGIGLAA QIG   R+VVI
Sbjct: 1   MILPIYVYGQPVLRKVAQDISSDYPDLQELIANMFETMDSSDGIGLAAPQIGKSIRVVVI 60

Query: 62  D-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           D         ++   +   +  +   I  + +  + +EGCLSIP     V R + I V Y
Sbjct: 61  DLNVLSDDFPEYKDFRKAYINPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D        + +G LA  +QHE DHL G +F+DH+S L++ +I  K+  L Q R
Sbjct: 121 LDEAFVSHDEWVEGYLARVMQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGR 175


>gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [NC10
           bacterium 'Dutch sediment']
          Length = 176

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +     P+LR+V+ P+       ++I  LID+M+E M   +G+G+AA Q+ V  +
Sbjct: 1   MAILKVARLGHPVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQ 60

Query: 58  LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           + VI          A      V IN ++   + +     EGCLS+ D+R    R   +  
Sbjct: 61  IAVIESKGNTRYPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRYQQVRA 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + +D   +     A G  A  LQHE DHL G LFID +  L+      + S+  +
Sbjct: 121 KALDREGRSFEFVATGFHARVLQHERDHLLGKLFIDRMKSLETLSYLPEYSRYWK 175


>gi|312793226|ref|YP_004026149.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876962|ref|ZP_07736937.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796277|gb|EFR12631.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180366|gb|ADQ40536.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 166

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A         + +            EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGAIELVNPEIEHSEGSAVDV------EGCLSVPNVWGEVERPQKVIVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168
              + A+GLLA  + HE+DHL+GILF+D + R    + I ++ SK  ++
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSKGEKM 163


>gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
 gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
          Length = 164

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  F DP+L+  + P++  +  +  L + M E M   +G+GLAA Q+G L R+ V 
Sbjct: 1   MALEMRTFGDPVLKSRAAPVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFVA 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +++D          +NP I   S+     +EGCLSIP  R +V+R A + +   + +   
Sbjct: 61  EVEDRRLV-----VVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVLTGQNLDGSP 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM-SKLVQLR 169
             I A+GLLA  LQHE DHL+G+L +D + R  R    +++  ++++ R
Sbjct: 116 LRIEAEGLLARVLQHETDHLDGVLILDRVDRETRRAALRELRERMLKSR 164


>gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis]
          Length = 166

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DP+LR  ++ + K N+++  L+D+M + M +  G+GLAA QIG+  R+VV
Sbjct: 15  MAVYEIVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +        +   +  EGCLSIPD++ +V RS  + V+  + N +
Sbjct: 75  IDVGDGRIELVNPEILEA------EGSQIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGE 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +I   G LA  LQHE+DHL G+LF+D L +
Sbjct: 129 EYVIEGTGFLARALQHEIDHLEGVLFVDLLDK 160


>gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822]
 gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822]
          Length = 175

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M +   +    +PILR+ ++P+E I    I  LID+++    S +G+G+AA Q+   YR+
Sbjct: 1   MAEQLEIAQLGNPILRQNAQPVEDITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRV 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++         +A    P   INPKII +S +     EGCLS+P  R  V R   ITV 
Sbjct: 61  FIVASRPSPRYPNAPEMVPTAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRYQAITVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D     Q       +A   QHELDHL+G++F+D L   +     ++  K++  
Sbjct: 121 YLDRQGNLQRQEFTDFVARIFQHELDHLDGMVFVDRLESTRDLYTEQEYQKIISQ 175


>gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|238687791|sp|B0SHH1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687819|sp|B0SQM2|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 179

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   +PILR+ S  + +      D   LI +M E M   DG+GLAA QIGVL +
Sbjct: 1   MAVRKILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKK 60

Query: 58  LVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           LVV+  +D   R          + +NP+I   S     + EGCLS+P  R  V+R   I 
Sbjct: 61  LVVVGQEDDNERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +++ D N        +G  A  LQHE DHL G+L++D L   K
Sbjct: 121 MKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTK 163


>gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 177

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  L+ +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGHNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160


>gi|260424655|ref|ZP_05732837.2| peptide deformylase [Dialister invisus DSM 15470]
 gi|260402717|gb|EEW96264.1| peptide deformylase [Dialister invisus DSM 15470]
          Length = 161

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 4/151 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   DPIL+ V+ P+   +  +  L++ M + MY ++G+GLAA QI V  R+ V D  
Sbjct: 10  KIITAGDPILKSVAMPVTAFDKKLKFLVNEMKKTMYESNGVGLAAPQIAVSKRVFVADDG 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +            P       D     EGCLS+P++  +V+R A +TV+Y D + + +  
Sbjct: 70  ESGFEAYINPRWTPDGDEKVTDT----EGCLSVPNWYGEVERYANVTVKYQDIHGKRKQK 125

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            A GLLA C+QHE DHLNGILFI+  + L +
Sbjct: 126 KATGLLARCIQHETDHLNGILFIEKANSLHK 156


>gi|56698050|ref|YP_168421.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679787|gb|AAV96453.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 165

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L     P+E I  D  +LI +M + MY+  G GLAA Q+GV+ R  V
Sbjct: 1   MSVLPILTWPDARLSWRCDPVEGIVPD--DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+       +PM  INP I+         +E CLSIP     V R   +TV++      
Sbjct: 59  MDVGWKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +   DG  A C+QHE DHLNG++ +DHL    R
Sbjct: 119 IHMADFDGFEARCIQHEFDHLNGVVTLDHLDPRAR 153


>gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
 gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
          Length = 264

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 87/167 (52%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I   ++++  L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 73  LEVVKYPDPILRARNKRINAFDANLRALADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 132

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP +   +    V++EGCLS P    +V R   + +   D       
Sbjct: 133 AGVKGEGEEIVLVNPVVYKSAKRLLVFEEGCLSFPGIYGNVLRPESVKIEAQDVTGAKIK 192

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +   GL A   QHE DHL GILF D ++    + + +++  L +  +
Sbjct: 193 VKLSGLPARVFQHEFDHLLGILFFDRMTMDVLETVREELKNLEKKYE 239


>gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 177

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L  V+RP+E  N  ++  L+ +M E M+  +G GLAA Q+GV  ++++
Sbjct: 1   MIREILKMGDQRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|150016029|ref|YP_001308283.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|149902494|gb|ABR33327.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 152

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 9/161 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R ++KI+  ++ LI++M E MY  DG+GLAA Q+G+L RL V
Sbjct: 1   MALRNIRKYGDDVLRKKCREVDKIDDRLLTLIEDMKETMYDADGVGLAAPQVGILKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          I            + +EGCLS+P    +V R  ++  R ++   +
Sbjct: 61  VDIGDGPLVFINPEIIET------SGSQIDEEGCLSLPGETEEVMRPNYVRARALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              I A+ LLA  + HE DHLNG LFID +   K    +KK
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRV---KGRGASKK 152


>gi|325292946|ref|YP_004278810.1| polypeptide deformylase [Agrobacterium sp. H13-3]
 gi|325060799|gb|ADY64490.1| polypeptide deformylase [Agrobacterium sp. H13-3]
          Length = 164

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L  +  P+   +  + NL+ ++++ M +  G+G+ A  IGV  R+ V
Sbjct: 1   MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPGVGITAAHIGVKQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L            INP+I++ S     + EG +S+P +  +V+R + + VR+ D    
Sbjct: 61  LELTPGTVLTY----INPEIVSHSAQTMRHVEGSVSMPGFTEEVERPSEVEVRFQDVAGV 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                A    A C+QHE+D L+G+ ++  LS+LKRD + KK  K  +
Sbjct: 117 EHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEKSRK 163


>gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 160

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L +V++ ++KI  +I  L+ +M + MY  +G+GLAA QIG+L R++V
Sbjct: 1   MAIRIIVKEPDEVLHQVAKEVKKITPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D        + +    I   +      EGCLSIP YR DV+R+  +TV+ +D N  
Sbjct: 61  VDVGDEHGL----IELINPEIVSKEGEQFGPEGCLSIPGYRGDVRRAMTVTVKGLDRNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                   LLA   QHE+DHLNG+L+ D
Sbjct: 117 EVTYTGSELLARAFQHEIDHLNGVLYTD 144


>gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916]
 gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916]
          Length = 201

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 89/149 (59%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ +R I K++  +  L  +ML  MY+  GIGLAA Q+GV  +L+VIDL
Sbjct: 31  LDIHKLGDEVLRQEARRISKVDESVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I T S     Y+EGCLSIP    DV R   I + Y D   + + 
Sbjct: 91  DLETPSSPPLVLINPEITTASATVDTYEEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKT 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152
           + ADGL+A C+QHE+DHL G+LF+D ++ 
Sbjct: 151 MKADGLMARCIQHEMDHLKGVLFVDRVTD 179


>gi|313683649|ref|YP_004061387.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156509|gb|ADR35187.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994]
          Length = 171

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 94/170 (55%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +P+  L+  S+ +   +  +   +D+M E M +++GIGLAA+Q+    R++++
Sbjct: 1   MLLPIITYPNKQLKARSQTVVNFDELLHRFLDDMYETMIASNGIGLAAIQVANPIRVLIL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + D    ++    +        +     +YQEGCLS+P +  DV+R   ++++Y + + 
Sbjct: 61  CIPDEEGNQHKENLLEIINPVIHNPKGNVLYQEGCLSVPGFYEDVERYETLSLKYQNRHG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   ++A  LLA  +QHE+DHL G LFI+ L+  +R    K+  K  + +
Sbjct: 121 EACELHASDLLAIAIQHEIDHLEGKLFIEKLTYNRRKKFEKEYKKAQKEK 170


>gi|269792636|ref|YP_003317540.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100271|gb|ACZ19258.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 168

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              + +FPDP+LR+    +     ++ +L+ +M   MY+ DG+GLAA Q+G+   L VID
Sbjct: 8   VLKVRVFPDPVLRQPVEEVRDFGEELSDLLADMWATMYAKDGVGLAAPQVGISKSLAVID 67

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                +       ++       D     +EGCLS P    +VKR + I +R+ D     +
Sbjct: 68  HHGDRYVVVNPQILS------QDGEEEGEEGCLSFPGIFVNVKRPSRIRLRFQDETGAVK 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G +A    HE+DHL G L IDH+S ++R MI  +++K  + R
Sbjct: 122 EMELQGFIARVFLHEIDHLRGRLLIDHVSPIRRQMIKTRLAKRSEDR 168


>gi|308069676|ref|YP_003871281.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
 gi|305858955|gb|ADM70743.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
          Length = 165

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+ PD +L +V++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MSIRIIVLEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D          +    I   +   +  EGCLSIP    DV+R+  +TV+ +D   +
Sbjct: 61  VDAGDEHGLIK----MINPEIVAEEGEELGPEGCLSIPGLNGDVRRAEKVTVKGLDREGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A GLL+   QHE+DHLNGILF D
Sbjct: 117 AITVTATGLLSRAFQHEIDHLNGILFTD 144


>gi|163733889|ref|ZP_02141331.1| peptide deformylase, putative [Roseobacter litoralis Och 149]
 gi|161393000|gb|EDQ17327.1| peptide deformylase, putative [Roseobacter litoralis Och 149]
          Length = 165

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  D++ + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MSVRAYLQWPDARLRTAAADVPEITPDVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R+      NP+II  S   + ++E   ++P   A V+R   +TVR+MD    
Sbjct: 61  VDASDSRDRRI--RLANPEIIEASAIMNDHEEASPNLPGVFAKVRRPRGVTVRFMDETGT 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL G ++ D+LS++KRDM+ +K  KL
Sbjct: 119 YVRRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163


>gi|314914712|gb|EFS78543.1| peptide deformylase [Propionibacterium acnes HL005PA4]
          Length = 200

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + + +L   +RP+ + + D+  LI +M   M + DG+GLAA Q+GV   L V 
Sbjct: 20  SLRRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118
              D  +  +   F NP +          +        +      + R    T    D  
Sbjct: 80  ACPDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +   G  A CLQHE DH NGI+F D LS+  R  + ++
Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182


>gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 177

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  LI +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIRGILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAK 160


>gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666]
          Length = 179

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+   +   +  L+ +M + M + DG GLAA QIGV  ++V
Sbjct: 1   MTVREILKMGDPRLFRVAQPVAAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I   S D     EGCLS+P  R  V R + I   
Sbjct: 61  IFGADQVNPRYPDAPLVPRTVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPRFSHIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DHL G L+   +   
Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLMGKLYPMRIRDF 160


>gi|282854675|ref|ZP_06264010.1| peptide deformylase [Propionibacterium acnes J139]
 gi|282582257|gb|EFB87639.1| peptide deformylase [Propionibacterium acnes J139]
 gi|314966213|gb|EFT10312.1| peptide deformylase [Propionibacterium acnes HL082PA2]
 gi|314981979|gb|EFT26072.1| peptide deformylase [Propionibacterium acnes HL110PA3]
 gi|315090890|gb|EFT62866.1| peptide deformylase [Propionibacterium acnes HL110PA4]
 gi|315095103|gb|EFT67079.1| peptide deformylase [Propionibacterium acnes HL060PA1]
 gi|315104332|gb|EFT76308.1| peptide deformylase [Propionibacterium acnes HL050PA2]
 gi|327328118|gb|EGE69887.1| peptide deformylase [Propionibacterium acnes HL103PA1]
          Length = 200

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + + +L   +RP+ + + D+  L+ +M   M + DG+GLAA Q+GV   L V 
Sbjct: 20  SLRRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNAADGVGLAATQVGVDLSLFVY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118
              D  +  +   F NP +          +        +      + R    T    D  
Sbjct: 80  ICPDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +   G  A CLQHE DH NGI+F D LS+  R  + ++
Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182


>gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 174

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 97/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKEVEINEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP I+  +++   ++EGCLS+P     V+R   + ++Y++   
Sbjct: 61  VC----DDGNGVVRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILF++ +S + + +I KK++ + + 
Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANMKKE 165


>gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120]
 gi|23396564|sp|Q8YSK6|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120]
          Length = 187

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 90/148 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++ +   LI +ML+ MYS+DGIGLAA Q+G+  +L+VID 
Sbjct: 17  LQLHYLGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INP I   S +    QEGCLSIP    DVKR   + V Y D N + Q 
Sbjct: 77  EPDNPANPPLILINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A  LL  C+QHE+DHLNG++F+D + 
Sbjct: 137 LKATDLLGRCIQHEMDHLNGVVFVDRVD 164


>gi|297162299|gb|ADI12011.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 185

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 72/146 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+ +  DP+L      +   ++ +  L+++M   MY+  G+GLAA Q+GV  R+ V D
Sbjct: 13  VRPMRLLGDPVLATSCEEVTAFDAALGRLVEDMYATMYAAQGVGLAANQVGVALRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A   R     V  +    +  
Sbjct: 73  CPDDEDRRHLGHVVNPRLVEADGVTVRGPEGCLSLPGIEAGTVRHDHAVVEGVTATGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            +   G  A CLQHE DHL+G LF D
Sbjct: 133 RVEGTGFFARCLQHECDHLDGRLFTD 158


>gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123743168|sp|Q3AC18|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 152

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DPIL+ +++PI++I  +I+ L++NM + MY+ +G+GLAA QIGV  R +V
Sbjct: 1   MAVYKVVEIGDPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          I               EGCLS+P  + +V R+  +TV+ ++   +
Sbjct: 61  VDVGEGLIELINPEIIEVSGEEKDI------EGCLSVPGVQGEVVRAKKVTVKGLNRYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +I A+GLLA   QHE+DHLNGILF++    + R 
Sbjct: 115 EIVIPAEGLLARAFQHEIDHLNGILFVEKADNIVRK 150


>gi|309811979|ref|ZP_07705745.1| peptide deformylase [Dermacoccus sp. Ellin185]
 gi|308434037|gb|EFP57903.1| peptide deformylase [Dermacoccus sp. Ellin185]
          Length = 191

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L   ++ +++I  D   L+++M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAVRPITIVGHKALHAPTKRVKEITDDTRALVEDMFETMEAANGVGLAANQVGVKQRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF------SDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D     N    +    +          D     EGCLS+P       R+ +  V  
Sbjct: 61  FDCPDDELGDNRRGVVINPKLEKGRVPAGEADEENDNEGCLSVPGEHFPTARADWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D +    +I   G  A  LQHE DHL+G L++D L+   R
Sbjct: 121 TDLDGNEIVIEGHGFFARMLQHETDHLDGYLYLDRLTPTMR 161


>gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1]
 gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1]
          Length = 177

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E  +   +  L+ +M E M+  +G GLAA QIGV  +L++
Sbjct: 1   MIREILRMGDPRLLDVAKPVEAFDTPALHELVADMFETMHHANGAGLAAPQIGVGLQLII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGNNARYPDAPAVPETVLINPSIEYLPPDMEEGWEGCLSVPGMRGVVSRYRKVHYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+   A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGKRIDRIAEDFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503]
 gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7]
 gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13]
 gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
 gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19]
 gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3]
 gi|158513748|sp|A6L9R8|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503]
 gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13]
 gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
 gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19]
 gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3]
          Length = 185

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  + K   D+  L+ NM E MY+ DG+GLAA Q+G+  RLVVI
Sbjct: 1   MILPVFLYGQPVLRKEAEDVPKDYPDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D           +      INP+ +  S++    +EGCLS+P     V RS  + VRY D
Sbjct: 61  DGDVMGDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            N +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++ 
Sbjct: 121 ENWEEHEEVVEGFAARIVQHECEHLTGHVFIDNVSAIRRQLNKGKLNSIIKG 172


>gi|330991623|ref|ZP_08315574.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329761642|gb|EGG78135.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 173

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FP   L++ + P++  ++    L  ++LE M++  GIG+ A  +G+L RLVV
Sbjct: 1   MAILPIIRFPHACLQQAAAPVDATSARTTELARDLLETMHAAPGIGITACHVGMLLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D      P    NP+II      +  +EG +S+P   A V R A + VRY   +  
Sbjct: 61  I---DLPGGNGPQARANPEIIWQDTATATAEEGSVSMPGIHAPVTRPARVRVRYTGLDGL 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA CLQHE+D +NGI +   LS L+RD   K+ S+  +L
Sbjct: 118 MVEEEAEGLLAACLQHEIDQINGIFWTRRLSPLRRDRAMKRYSRQTRL 165


>gi|289178547|gb|ADC85793.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 163

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + + PDP+LR    PI +I   + NL+ ++L+ +      G++A QIGV  R    
Sbjct: 5   AIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFSY 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++          V    +            EGCLS+P      KR+ +  VR MD +   
Sbjct: 65  NIDGKIGYVLNPVLEETRGE------QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGNE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ++  DG++   LQHE DHL+G L+ID L +
Sbjct: 119 IVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 149


>gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
 gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
          Length = 183

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K +V   DP+LR V+  +       I  LID+M+  +    GIGLAA QIG+L R++
Sbjct: 1   MTSKSIVRVGDPVLRSVAALVPDPTAPAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVL 60

Query: 60  VIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + D      P          INP +    D  ++  EGCLSIP  R +V R   + V
Sbjct: 61  IFWVPDARATNEPDDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRHLRMRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---SKLVQLR 169
                  +       G  A  LQHE+DHL+GIL++D ++   R   T+++       + R
Sbjct: 121 TATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMTDFTRFGFTEEVHEAEAERRSR 180

Query: 170 D 170
           +
Sbjct: 181 E 181


>gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 177

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +  P++   DP L RV+ P+E+ +  ++  LI +M E M +  G+GLAA QIGV  +LV+
Sbjct: 1   MIHPILKMGDPRLLRVAPPVEQFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      +  NP I   SD+     EGCLS+P  R  V R   I     
Sbjct: 61  FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPRYRHIRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   +    +
Sbjct: 121 DPYGKLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSK 160


>gi|306845817|ref|ZP_07478385.1| peptide deformylase [Brucella sp. BO1]
 gi|306273709|gb|EFM55547.1| peptide deformylase [Brucella sp. BO1]
          Length = 164

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRQLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  L---ELDRTAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413]
 gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413]
          Length = 187

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 89/148 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++ +   LI +ML+ MYS DGIGLAA Q+G+  +L+VID 
Sbjct: 17  LQLHYLGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I   S +    QEGCLSIP    DVKR   + V Y D N + Q 
Sbjct: 77  EPDNPANPPLVLINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A  LL  C+QHE+DHLNG++F+D + 
Sbjct: 137 LKATDLLGRCIQHEMDHLNGVVFVDRVD 164


>gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
 gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
          Length = 169

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +PILR+ ++ + + ++ +  L+D+M E M++++G+GLAA QI +  R+ V
Sbjct: 1   MAMRQIITSENPILRQKAKKVHRFDASLQKLVDDMFETMHASNGVGLAAPQIALSIRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            + +            NP+I+    +    +           +++R+A I V+ +D   +
Sbjct: 61  AEYEGRRVA-----IFNPEIVKAEGEERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A+G  A  LQHE+DHL+GILF+D L  
Sbjct: 116 PVRVNAEGWFARILQHEIDHLDGILFLDRLDS 147


>gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 198

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+VI  DP+L   + P+E     + +++I+ L+D+MLE M   +G+GLA  Q+G  
Sbjct: 1   MAVLPIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRD 60

Query: 56  YRLVVIDLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            RL V D  D    +         V    +I     D     EGCLS+P       R+ +
Sbjct: 61  LRLFVYDCPDEETHERRRGEVINPVLTTSEIPETMPDPDDDWEGCLSVPGESFPTGRADW 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             V   D N +   I   G  A  LQHE  HL+G L+ D L         K + K 
Sbjct: 121 AKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQ 176


>gi|57237196|ref|YP_178208.1| peptide deformylase [Campylobacter jejuni RM1221]
 gi|86149710|ref|ZP_01067940.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86153727|ref|ZP_01071930.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597153|ref|ZP_01100388.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926356|ref|ZP_01810040.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|153951420|ref|YP_001397439.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|157414500|ref|YP_001481756.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205356562|ref|ZP_03223325.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218561870|ref|YP_002343649.1| peptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|17432957|sp|Q9PIT8|DEF_CAMJE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|57166000|gb|AAW34779.1| peptide deformylase [Campylobacter jejuni RM1221]
 gi|85839978|gb|EAQ57237.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85842688|gb|EAQ59900.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190214|gb|EAQ94188.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359576|emb|CAL34360.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844748|gb|EDK21853.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|152938866|gb|ABS43607.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|157385464|gb|ABV51779.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205345567|gb|EDZ32207.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|284925483|gb|ADC27835.1| peptide deformylase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307747142|gb|ADN90412.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni M1]
 gi|315057628|gb|ADT71957.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni S3]
 gi|315928123|gb|EFV07441.1| peptide deformylase [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930199|gb|EFV09314.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 305]
          Length = 175

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1   MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    +        INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|283955632|ref|ZP_06373125.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792857|gb|EFC31633.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 175

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R +++
Sbjct: 1   MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRALLV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    +        INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|134102367|ref|YP_001108028.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291009319|ref|ZP_06567292.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914990|emb|CAM05103.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 166

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+LR  + P+   +  + +++ ++L+ + +    GLAA QIGV  R   
Sbjct: 1   MAFREIRRFGDPVLRTPAEPVTVFDDRLRSVVADLLDTVDAPGHAGLAAPQIGVGIRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S++     EGCLS+P+   D  R+    VR +D + +
Sbjct: 61  YNVDGEIG-----YVVNPEVVELSEEQQEGPEGCLSVPELWFDTPRARHAVVRGVDADNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +   GL+A CLQHE DHL+G++++  L+ 
Sbjct: 116 PVTVSGSGLMARCLQHETDHLDGMIYVQRLAP 147


>gi|254485851|ref|ZP_05099056.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214042720|gb|EEB83358.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 165

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +P+  LR  +  + +I  DI  L D+M+  M +  G+GLAA QIGV+ ++ V
Sbjct: 1   MTVRKIVPWPNTCLRTAAAEVPEITDDIRALWDDMIATMDAMPGVGLAAPQIGVMLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP I+  S   + + E   ++P   A VKR   +TVRY+D    
Sbjct: 61  VDA--SQARNKRIRLANPVILDASAILNEHDEASPNLPGVSAKVKRPRGVTVRYLDETGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  GL AT +QH++DHL G ++ D+LS+ +RDM+ +K  K  
Sbjct: 119 VTRRDFVGLEATSVQHQIDHLAGKMYFDNLSKTRRDMLLRKARKFK 164


>gi|222529031|ref|YP_002572913.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725]
 gi|254767570|sp|B9MR36|DEF_ANATD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222455878|gb|ACM60140.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725]
          Length = 166

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A           +            EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGAIELVNPEIEQVEGSAVDV------EGCLSVPNVWGEVERPQKVVVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|119357657|ref|YP_912301.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266]
 gi|158512604|sp|A1BHK0|DEF_CHLPD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|119355006|gb|ABL65877.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266]
          Length = 188

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D +LR  ++P++ I+ +I +L+ +MLE M +  GIGLAA Q+G   RL+VI
Sbjct: 1   MILPINIYNDEVLRATAKPLKGIDRNIRDLVASMLESMRNASGIGLAAPQVGCSIRLLVI 60

Query: 62  D--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    +    + P+V INP ++      ++ +EGCLS+P    DV R + IT++Y D + 
Sbjct: 61  DLSCMEKYADEKPVVVINPHLLAVKGYNAM-EEGCLSLPGILGDVVRPSSITLKYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           + +     G++A  LQHE+DHL+G LFID + +  R  I K++  L 
Sbjct: 120 EERTGEFSGMMARVLQHEIDHLDGKLFIDRMQKRDRRKIDKELHSLA 166


>gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121]
 gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121]
          Length = 199

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 10/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L + + P+ +  ++I  LI +M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFV 60

Query: 61  IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D                       +I     D     EGCLS+P  +    R+ +  V 
Sbjct: 61  YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDFEGCLSVPGEQFPTGRADWAKVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-MITKKMSK 164
             D +     +   G  A  LQHE  HL+G L+ D L  + R+    KK+ K
Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL--IGRNARAAKKIIK 170


>gi|83855043|ref|ZP_00948573.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842886|gb|EAP82053.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 155

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L  V  P+     +I  LI +M + MY+  G GLAA Q+G   R+ V
Sbjct: 1   MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFDTMYAAPGRGLAAPQVGRTERIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D         P+  INP+I++ SD  ++ +EGCLSIP    D+ R+  +T+R+ D +  
Sbjct: 61  FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  G  A  +QHE DHL+GI+  D +
Sbjct: 120 THERKFAGAEAVIVQHEYDHLDGIVIYDRV 149


>gi|168182587|ref|ZP_02617251.1| peptide deformylase [Clostridium botulinum Bf]
 gi|237795949|ref|YP_002863501.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|182674255|gb|EDT86216.1| peptide deformylase [Clostridium botulinum Bf]
 gi|229263426|gb|ACQ54459.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 147

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MYS +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I  +            EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  +GLLA    HE+DHL+G+LF+D +
Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGVLFVDKV 144


>gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264]
 gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264]
          Length = 170

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 96/163 (58%), Gaps = 5/163 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR  S  ++ ++ ++  ++D M+E M   +G+GLAA Q+ +  R  V+++++
Sbjct: 3   IVLYEHPTLRTKSTEVDIVDDELRKILDEMVETMRKANGVGLAANQVDIPKRFFVLEVEN 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +      +NP+II  SD+   Y+EGCLSIP     V R + I V+Y++   +  I  
Sbjct: 63  KVKK-----IVNPEIIESSDEIIEYEEGCLSIPGIYKKVNRPSEIKVKYLNEKGEEVIEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A   QHELDHL+G+LFID +S L + +I+KK+  + + 
Sbjct: 118 LKEMWARAFQHELDHLDGVLFIDRISVLNKRLISKKLELMKKE 160


>gi|260428274|ref|ZP_05782253.1| peptide deformylase [Citreicella sp. SE45]
 gi|260422766|gb|EEX16017.1| peptide deformylase [Citreicella sp. SE45]
          Length = 166

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++++PD  L++    +  + +++  L+ ++ E MY   G GLAA Q+GVL R+ V
Sbjct: 1   MSLREILLWPDERLKQPCETVADV-AEVEQLVTDLFETMYDAPGRGLAAPQVGVLKRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+  INP+I+  S++ +   EGCLSIP   A V+R   + + + D +  
Sbjct: 60  MDAGWKEGDMVPLACINPEIVEVSEETASGPEGCLSIPGVTAQVRRPVRVRMAFTDLSGT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            Q    +G  A   QHE DHL G++  D L   +   +  +     
Sbjct: 120 RQERDFEGSEAIVAQHEYDHLEGLVHFDRLDPQEAKALKLEYEAQQ 165


>gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
 gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
          Length = 157

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P  IL +   P+++ +  ++ L+++M + M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R    + +    I  +    +  EGCLS P   A+VKR+ ++ VR  D   +
Sbjct: 61  VDVGDEHGR----IELINPRIMEARGEQIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  LQHE+DHLNGILF   +
Sbjct: 117 PFTLKATGFLARALQHEIDHLNGILFTSKV 146


>gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
 gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
          Length = 166

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+ D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRIYEDEILRKKSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A           +            EGCLS+P+   +V+R   + V   D    
Sbjct: 61  IDIGEGAIELVNPQIEYSEGSVVDV------EGCLSVPNMWGEVERPQKVVVNAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  L HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARALCHEIDHLDGILFVDKVIRF 147


>gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
          Length = 461

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V  P+ +LR+  + + K +  +  +ID M + MY  DG+GLAA QI    R+ V+   
Sbjct: 3   KVVEVPNEVLRQKCQRVTKFDKKLGKMIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTD 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D      P+  INP+II  +      +  CLS+P     V+R   I V+  D   +   I
Sbjct: 63  DETG---PIELINPEIIEATGSEIDDEG-CLSMPGIFGPVERFEQIVVKSQDRLGRSVKI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
            A+G  A  +QHE+DHL+G+LF D L
Sbjct: 119 KANGFFARAIQHEMDHLDGVLFTDKL 144


>gi|110678659|ref|YP_681666.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114]
 gi|109454775|gb|ABG30980.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114]
          Length = 165

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +++ + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MSVRAYLKWPDARLRTAAADVAEITPEVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R+      NP+II  S   + ++E   ++P   A ++R   +TVR+MD    
Sbjct: 61  VDASDTRDRRI--RLANPEIIEASAIMNDHEEASPNLPGVFAKIRRPRGVTVRFMDETGT 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL G ++ D+LS++KRDM+ +K  KL
Sbjct: 119 YVQRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163


>gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29611708|sp|P59493|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 160

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++PI KI++ I N+I NM + MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLKILKYPDDRLRIIAKPISKIDTKIHNIIINMFDTMYYENGIGLAATQVNIPLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D     N  + +    IT     +  QEGCLSIP+Y+A++ RS  ITV  ++   +
Sbjct: 61  I---DKIEELNHPLVLINPKITKRSGLTSIQEGCLSIPNYQAEISRSKKITVTALNYFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              +     L+ C+QHE+DHL G L ID+LS L    + KK
Sbjct: 118 RIKLKTSSTLSICIQHEIDHLIGKLLIDYLSNLTNLKLLKK 158


>gi|114770092|ref|ZP_01447630.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255]
 gi|114548929|gb|EAU51812.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255]
          Length = 169

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K  + +PD  L      I  I      +  +M + MY+  GIGLAA QIG++  L V
Sbjct: 1   MAIKKFIRYPDKRLSVKCELISSITDKDHEVWKDMFDSMYNMPGIGLAACQIGIMRSLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D      P    NPKI+  S  +   QEG  ++P   A++KR   +TVRY+D N  
Sbjct: 61  VDVGDGKVE--PFEMANPKILYSSGVYIENQEGSPNLPGVWANIKRPRAVTVRYIDKNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL A  +QH++DHLNG +F +HLS  KR M+  K  KL + 
Sbjct: 119 QIERDFVGLWAVSVQHQIDHLNGKMFFEHLSSTKRKMLINKSQKLSKQ 166


>gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 159

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 1/152 (0%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFI 76
           + P+  ++  +  L D+MLE MY   GIGLAA Q+G++ R++V+D   D      PMV I
Sbjct: 2   ADPVATVDKTLHALADDMLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLI 61

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP++I  S + ++Y EGCLSIP+  A+V+RSA + V +MD N + Q      L ATC+QH
Sbjct: 62  NPRVIAASSETNIYDEGCLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQH 121

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           E+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 122 EIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 153


>gi|239945304|ref|ZP_04697241.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291448765|ref|ZP_06588155.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291351712|gb|EFE78616.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 219

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               + +  + +LRR  + +      ++  L+D+M        G GLAA QIGV  ++ V
Sbjct: 35  AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 94

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD---VKRSAFITVRYMDC 117
            D+ D    ++    +NP +     +     +              V R     VR  D 
Sbjct: 95  WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 154

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +    +I   G  A CLQHE DHL+G L++D L+R +R    ++M++  
Sbjct: 155 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAEAK 203


>gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 161

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 4/164 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   + +LR  +  + +++  I  L D+M+  M+  DG+GLAA QIGVL RL V  ++
Sbjct: 2   KILTLGNELLRERTATVAEVDESIRRLADDMIVTMHEDDGVGLAAPQIGVLKRLFVCHVR 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P VFINP+II  S +   Y+EGCLSIP   ADV R   I V+ +D N +   +
Sbjct: 62  GDV----PRVFINPEIIGTSQEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKL 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            A+GLLA  +QHE+DHL G+LFIDHL   KR  + K   K  + 
Sbjct: 118 AAEGLLARVIQHEMDHLKGVLFIDHLEERKRRRLLKLYEKRWRG 161


>gi|227504404|ref|ZP_03934453.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
 gi|227199052|gb|EEI79100.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
          Length = 162

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+L   +  IEK +S +  L ++MLE M +  G+GLAA QIG+  R+  +    H  
Sbjct: 2   YGDPVLTSRATEIEKFDSSLEALANDMLETMDAAGGVGLAANQIGLTKRIF-VYDCSHFQ 60

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                  INP      D      EGCLSIPD   + +R   + V   D       + A G
Sbjct: 61  TGLRGAIINPVWTPLGDKTQDGPEGCLSIPDITENTERYESVVVHGRDVRGNAISMVASG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L+A C+QHE DHL+G+LF+  L+  +R    + +  
Sbjct: 121 LMARCIQHETDHLDGVLFLQRLTPERRKEAMQVIRN 156


>gi|71281182|ref|YP_267165.1| peptide deformylase [Colwellia psychrerythraea 34H]
 gi|71146922|gb|AAZ27395.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 166

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  P+  L   ++P+  + S I  LID+++E MY   DGIGLAA Q+G    +V
Sbjct: 1   MTVLTILTAPNDKLIEQAKPVSDV-SQIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D+         +   +IT  +  +  QEGCLSIP Y ADV+R   +TV  +D N 
Sbjct: 60  VIDISDNRDELL---VLVNPVITHGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   I +D  LA  +QHE+DHL G LFID+LS LK+ M  KK+ K ++ 
Sbjct: 117 KELTITSDEFLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIKN 165


>gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 166

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+ S+ +E  N  +  L+D+M E M S DG+GLAA Q+G+L RL+V
Sbjct: 1   MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +D  ++    +     +IT  +   V +EGCLSIP  + DVKR+  I V Y   + +
Sbjct: 61  VDDRDEENQHRFYLINP--VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + I  +  LA  +QHE+DHL+GIL+ D   ++ R
Sbjct: 119 EEKINCEDFLARIIQHEIDHLDGILYTDRAEKMYR 153


>gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601]
          Length = 165

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++++PDP L++    +    + +  L+ +MLE MY   G GLAA Q+GVL R+ V
Sbjct: 1   MALREILLWPDPKLKQPCAEVGDP-AAVSELVTDMLETMYDAPGRGLAAPQVGVLKRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V I+P+I+  SD+ +   EGCLSIP   A+V+R  ++ + Y D N  
Sbjct: 60  MDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGCLSIPGVTANVRRPVWVRMAYTDLNGD 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            Q    +G  A   QHE DHL+G++  D L  
Sbjct: 120 RQERRFEGAEAIVAQHEYDHLDGLVHFDRLDP 151


>gi|167623826|ref|YP_001674120.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167353848|gb|ABZ76461.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 163

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R + P+  I   +   ID+++E MY   DGIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   R  PMV INP+ +    ++   +EGCLSIP YRA V R   + V  +D + 
Sbjct: 60  VIDLSDE--RDQPMVLINPEFLESRGEYQG-EEGCLSIPGYRAKVNRHQGVKVTALDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHLNG++F DHLS LK+ +  KK+ K  
Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKKYK 163


>gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4]
 gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4]
          Length = 199

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 10/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L + + P+ +  ++I  LI +M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFV 60

Query: 61  IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D                       +I     D     EGCLS+P  +    R+ +  V 
Sbjct: 61  YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDFEGCLSVPGEQFPTGRADWAKVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-MITKKMSK 164
             D +     +   G  A  LQHE  HL+G L+ D L  + R+    KK+ K
Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL--IGRNARAAKKIIK 170


>gi|84496887|ref|ZP_00995741.1| peptide deformylase [Janibacter sp. HTCC2649]
 gi|84383655|gb|EAP99536.1| peptide deformylase [Janibacter sp. HTCC2649]
          Length = 217

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  +P+L R +  +E I+  I  L+ +M E M +  G+GLAA Q+GV  R+  
Sbjct: 1   MTIRPITITGEPVLHRRAESVEVIDDGIRELVADMFETMDAARGVGLAAPQVGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             + +H       V INP +            +   EGCLS+P     ++R    T+  +
Sbjct: 61  WQMDNHDGIPPRGVVINPFVTASKPVAGDPVPADESEGCLSVPGESFPLRRGETATLTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D +       A G  A   QHE DHLNG L++D L
Sbjct: 121 DLDGNDVSYAATGWFARMFQHEYDHLNGFLYVDRL 155


>gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 177

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   DP L R + P+E+     +  LI +M E M   DG GLAA QIGV  RLV+
Sbjct: 1   MIRPVLRMGDPRLARKAAPVEQFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +   S       EGCLS+P  R  V R + +     
Sbjct: 61  FGVDRNPRYPEAEPVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPRWSRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +       G  A  +QHE DHL+GIL+   +  + R    +++
Sbjct: 121 DARGRPIDRSVAGFHARVVQHECDHLDGILYPMRIRDMSRFGFVEEL 167


>gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977]
 gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977]
          Length = 199

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P+ ++ DP+LR+ +RP++  +  +  L +NM+E M+   G+GLAA Q+G+  RL 
Sbjct: 1   MAEVLPIRLYGDPVLRKKARPVQDFSD-LEELAENMVETMFEYGGVGLAAPQVGLSRRLF 59

Query: 60  VIDL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           V                 +  +  +N  V +NP+I          +        Y  DV 
Sbjct: 60  VAAEYALEEEEAEADEEERPKSALRNLYVMVNPRITHREGTQVGTEGCLSIPGVYSDDVP 119

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK----K 161
           R   I V Y D     + + A+G LA  +QHELDHL G+LF+D +    R    +    +
Sbjct: 120 RDLQIRVEYQDVTGAPRTLEAEGYLARVIQHELDHLEGVLFLDRIPAELRRAFLEEHRAE 179

Query: 162 MSKLVQ 167
           ++++ +
Sbjct: 180 LAEMQR 185


>gi|296115525|ref|ZP_06834155.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977920|gb|EFG84668.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 305

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V+FPD  LR V+ P+   +  +  +  ++L+ + +  GIG+ A  IGVL R+VV+   
Sbjct: 142 PIVLFPDQRLRMVAEPVVVFDETLRAMTADLLDTVRAAPGIGITAPHIGVLQRVVVL--- 198

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D      P  +INP+I+  SD+ + ++EG +S+P     V+R A + VRY D +    + 
Sbjct: 199 DLPGGLGPQTYINPEIVWRSDETARHEEGSISMPGVTEVVERPARVRVRYRDVDGHEMME 258

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ADGL A C QHE+D L G+ +   LS L+R  +  +  K+ +
Sbjct: 259 DADGLRAVCHQHEIDQLEGVFWTQRLSTLRRSRLMSRYEKIKK 301


>gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 179

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M ++ ++   DP L RV+RP+ + +  ++  L+ ++L+ M++ +G GLAA QIGV  ++V
Sbjct: 1   MTQRTILKMGDPRLLRVARPVTRFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V            A      V INP +    D+ S+  EGCLS+P  R  V R   +   
Sbjct: 61  VFGSGAPNPRYPDAPVVPRTVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPRWQTVRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D   +       G  A  +QHE DHL G L+   +   
Sbjct: 121 GFDVRGEPIDRTVSGFHARVVQHECDHLWGKLYPMRMRDF 160


>gi|239991763|ref|ZP_04712427.1| peptide deformylase [Streptomyces roseosporus NRRL 11379]
          Length = 206

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               + +  + +LRR  + +      ++  L+D+M        G GLAA QIGV  ++ V
Sbjct: 22  AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD---VKRSAFITVRYMDC 117
            D+ D    ++    +NP +     +     +              V R     VR  D 
Sbjct: 82  WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 141

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +    +I   G  A CLQHE DHL+G L++D L+R +R    ++M++  
Sbjct: 142 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAEAK 190


>gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
           27560]
 gi|149734022|gb|EDM50141.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
           27560]
          Length = 165

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    +P LR++ +P++++N     LI +M + MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIRELGEPCLRKICKPVKEVNLRTKILIGDMFDTMYEANGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      P VFINP+II      + Y+  CLS+P     V R+  + V+  + N +
Sbjct: 61  VDCGDEEGNSVPYVFINPEIIDREGVQTGYEG-CLSVPGKSGMVPRAQKVKVKAFNENME 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A+GLLA C+ HE DHL+GI+++D + 
Sbjct: 120 EFEMEAEGLLARCILHENDHLDGIVYVDKVE 150


>gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 177

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R++ P++  +  ++  L+++M E M++ +G GLAA QIGV  ++V+
Sbjct: 1   MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSK 160


>gi|312622713|ref|YP_004024326.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203180|gb|ADQ46507.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 166

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A           +            EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGAIELVNPEIEQVEGNAVDV------EGCLSVPNVWGEVERPQKVIVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|254477587|ref|ZP_05090973.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031830|gb|EEB72665.1| peptide deformylase [Ruegeria sp. R11]
          Length = 165

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  D+  L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRTCLPWPDKHLRSRAVEVSEITDDVRALWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S     + E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VDGSSERGRAV--RMANPEILHASVALREHDEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K  KL
Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLLRKAKKL 163


>gi|68536091|ref|YP_250796.1| peptide deformylase [Corynebacterium jeikeium K411]
 gi|68263690|emb|CAI37178.1| polypeptide deformylase [Corynebacterium jeikeium K411]
          Length = 168

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 8/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +  F DP+L+ V+ P++     ++    L+++MLE M    G+GLAA QIG+  R
Sbjct: 1   MTVLNMRYFGDPVLKTVADPVKPEQIQDAGTRRLVEDMLETMDHYGGVGLAANQIGITRR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + V D             INP      ++     EGCLSIPD   DV R+  + +R +  
Sbjct: 61  IFVFDCDGDRG-----HVINPTWEAVGEETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +        L+A C+QHE DHL+G+LFI HLS  +R    K++ +
Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGVLFIQHLSTEQRREAMKQIRE 162


>gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101]
          Length = 200

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 92/153 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR  ++ I K++  I +L  +ML  MY+  GIGLAA QIG   +L+VIDL+
Sbjct: 31  DIHTLGDQVLRTPAKRIGKVDDSIRSLARDMLVSMYAAKGIGLAAPQIGEPLQLLVIDLE 90

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +  P++ INP+I +       Y+EGCLSIP    DV R + + V Y D   + + +
Sbjct: 91  IEDPKSPPLILINPEITSVGGSLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRL 150

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            ADGL+A C+QHE+DHLNG+LF+D ++   +  
Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDHDKLR 183


>gi|86151304|ref|ZP_01069519.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315123790|ref|YP_004065794.1| peptide deformylase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841651|gb|EAQ58898.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017512|gb|ADT65605.1| peptide deformylase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 175

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S+ + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1   MVRKIITYPNPRLFLNSKIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +    +        INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans]
 gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
           arsenicoxydans]
          Length = 178

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+++ N  ++  LI +M + M++  G GLAA QIGV  RLV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INPK+   S +     EGCLS+P  R  V R + +    
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D   +     ADG  A  +QHE DHL+GIL+   +   
Sbjct: 121 FDQFGKAISRDADGFHARVVQHECDHLDGILYPMRIEDF 159


>gi|226310454|ref|YP_002770348.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226093402|dbj|BAH41844.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 171

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59
           M  K ++ F DPILR+V++P+E++N     L+D M E +Y+ DG  GLAA QIG+L R+V
Sbjct: 1   MAVKQILPFGDPILRKVAKPVEELNEKTFKLLDEMAETLYAADGRAGLAAPQIGILRRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  D          I            +  E CLS P Y  +VKR+  + V+ ++   
Sbjct: 61  VMDCGDGLIELINPEIIERSGE------QIGMEACLSFPGYYGNVKRAEHVKVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  DG LA C+QHE+DHL+GILF+DH+
Sbjct: 115 EEMILAGDGFLAVCMQHEIDHLDGILFVDHV 145


>gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803]
 gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803]
          Length = 177

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++    P LR+ +R IE        +  LID++LE   +  G GLAA QI   +R
Sbjct: 1   MTIRAVLRLGHPALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWR 60

Query: 58  LVVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV+ +        A      V INP+I   S+  S   EGCLS+P  R +V+R   I +
Sbjct: 61  VVVVGMGANPRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQRIHL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + D N        +G  A  +QHE DHL+G+LF D L
Sbjct: 121 SWRDPNGGWHHEELEGFHARVVQHECDHLDGVLFPDRL 158


>gi|62317677|ref|YP_223530.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|62197870|gb|AAX76169.1| Def-1, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
          Length = 164

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  +G+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHVGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|121612384|ref|YP_999910.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004870|ref|ZP_02270628.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250043|gb|EAQ73001.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 175

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1   MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +    +        INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|254720523|ref|ZP_05182334.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985555|ref|ZP_06098290.1| peptide deformylase-like protein [Brucella sp. 83/13]
 gi|306838109|ref|ZP_07470966.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264664147|gb|EEZ34408.1| peptide deformylase-like protein [Brucella sp. 83/13]
 gi|306406846|gb|EFM63068.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 164

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P  +INP+I+   ++   +QEG +S+P    +V+R A I + Y D +  
Sbjct: 61  L---ELDRTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLCYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|254457336|ref|ZP_05070764.1| peptide deformylase [Campylobacterales bacterium GD 1]
 gi|207086128|gb|EDZ63412.1| peptide deformylase [Campylobacterales bacterium GD 1]
          Length = 174

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PD IL+++S  +EK + ++ +L+D M  +M  T+GIGLAA+Q+    +++++
Sbjct: 1   MNLSIVEYPDKILKQISEKVEKFDKELHDLLDAMYPIMVKTNGIGLAAIQVARPKQVLIL 60

Query: 62  DLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +    +     I     II   D   VYQEGCLS+P +  D+ R   ITV Y D +A
Sbjct: 61  NIPEEDGEQPIENLIEMVNPIIVKKDGEIVYQEGCLSVPSFYEDIIRFENITVNYQDRDA 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + + A+GLL+  +QHE+DHL GILFID LS  +R    K+  ++ + +
Sbjct: 121 NTKTLEANGLLSVAIQHEIDHLKGILFIDKLSYARRKKFEKEYKRMQKEK 170


>gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 177

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P+L +V++P+++ +  ++  LI +M + M   +G GLAA QIGV  ++V
Sbjct: 1   MAIKPVLKMGEPLLLQVAKPVDRFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V +NP +   SD+     EGCLS+P  R  V R   +  + 
Sbjct: 61  IFGFEKNQRYPDADEVPFTVLLNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYTNLHYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D          +G  A  +QHE DHL GIL+   +   +
Sbjct: 121 FDQYGSAIDRNVNGFHARVVQHECDHLQGILYPMRIKDFR 160


>gi|269124846|ref|YP_003298216.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268309804|gb|ACY96178.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 178

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 80/161 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+    DP+LR    P+   ++ +  L+D+M   MY+ +G GLAA QIGV  ++ V D
Sbjct: 13  VRPIRRLGDPVLRTECDPVRTFDAGLRRLVDDMFATMYAANGAGLAANQIGVSLQVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            +D   R++    INP ++    D  V  EGCLS+P  R    R     V  +D + +  
Sbjct: 73  CEDDLGRRHVGHVINPVLVAEDGDIVVEDEGCLSVPGLRFPTPRYRHAVVEGVDLDNKPL 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            I   G  A CLQHE  HL G ++ID L    R    + + 
Sbjct: 133 RIEGTGYFARCLQHETYHLRGGVYIDVLKGETRREAMRAIR 173


>gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 162

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    PIL+ V+ P+E +N  +  LI++M + MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D       +  INP+II         +  CLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  V---DDHAGSGLIALINPEIIHGEGSQIGLEG-CLSVPGYFGDVERFEKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +I ADG LA   QHE+DHL G LFI+  + L+R
Sbjct: 117 KVMIKADGFLARIFQHEIDHLEGHLFIEKATNLRR 151


>gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX]
 gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX]
          Length = 221

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              + +  + +L R +  + +    ++  LID+M   MY  +G+GLAA Q+GV  R+ V 
Sbjct: 37  VLRVTVVGEDVLHRRNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDLRVFVY 96

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    INP + T+  +     V  EGCLS+P   A++ R+ +  V   D +
Sbjct: 97  DCPDDDGVRHVGHVINPVLETWGAEEEGLVVENEGCLSVPGPHAELARAPYARVTGFDRD 156

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +   G  A CLQHE DH  G L+ID LS+ +R  + K M ++   
Sbjct: 157 GNPVTVEGSGYFARCLQHETDHTLGRLYIDRLSKRERKKVLKAMEEMRDQ 206


>gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 153

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++D       +  +NP+II    +    +  CLS+P++ A+VKR A + V+Y+D N +
Sbjct: 61  VDIRDEDGL---IKLVNPEIIEKDGEQVGVEG-CLSVPNFNANVKRPAHVIVKYLDENGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A+GL A  L HE+DHLNG+LFID
Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGVLFID 144


>gi|295840257|ref|ZP_06827190.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295827867|gb|EDY45695.2| peptide deformylase [Streptomyces sp. SPB74]
          Length = 196

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 74/159 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +   P+L   +R        +  L++++   MY+  G+GLAA QIG   RL V D
Sbjct: 26  VRPLSLHGAPVLTTPARESGDFGPRLEKLVEDLFATMYAARGVGLAAPQIGEGVRLFVYD 85

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A   R     V     +   +
Sbjct: 86  CPDDEDERHLGHLVNPRLVEVDGPLVRGPEGCLSLPGLEAATPRFDRAVVEGRTADGTRR 145

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +   G  A CLQHE DHL G L++D L   +R  + ++
Sbjct: 146 RVEGTGFFARCLQHEYDHLEGGLYVDRLDPRRRRKVLRE 184


>gi|160893328|ref|ZP_02074115.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50]
 gi|156865020|gb|EDO58451.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50]
          Length = 153

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +LR+  +P+ ++   +  LID+M + MY  +G+GLAA Q+G++ R+VV
Sbjct: 1   MATRKIRIDGDSVLRKKCKPVTEMTPRLSQLIDDMFDTMYEANGVGLAAPQVGIVKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     +P+  INP+II  S + +  +  CLS+P     V R   +  + +D +  
Sbjct: 61  IDIGDE----HPLTLINPEIIETSGEQTGDEG-CLSLPGKVGQVTRPMHVVCKALDRDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +GLLA  + HE DHL GIL+ D +  
Sbjct: 116 EITVTGEGLLARAICHETDHLEGILYKDKVED 147


>gi|85700131|gb|ABC74515.1| polypeptide deformylase [Helicobacter pylori]
 gi|85700141|gb|ABC74520.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 100/171 (58%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +   ILR +S+ +   ++ +   + +M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYSSKILRTISKEVVSFDAKLHQQLVDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           I+L      ++    +      F +     +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171


>gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405]
 gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405]
 gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402]
          Length = 169

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   +  LR VS+P+EKI+ +I +LID M   +   +GIGLAA Q+G   RL ++ + 
Sbjct: 2   KVLYLGEETLREVSKPVEKIDENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVFIN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +        VFINP+II  S +  + +EGCLSIP    +V R + + V++++ + + + I
Sbjct: 62  E-----QKYVFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTI 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            A GLLA  +QHE DHLNGILFID LS  K+    +K  
Sbjct: 117 EASGLLARVIQHENDHLNGILFIDRLSEEKKAEAIEKFE 155


>gi|254438825|ref|ZP_05052319.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198254271|gb|EDY78585.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 164

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 85/159 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV + + ++P  +L +   P    + D+  LI+++ + MY   G  LAA QIGV  R+ V
Sbjct: 1   MVTRDIRLWPHAVLTQTCAPASLNDPDLDGLIEDLFDTMYHAKGRVLAAPQIGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P  FINP+I   + D     E CLSIPD    V R   + +R+ + +  
Sbjct: 61  VDVTWKDGIRDPRAFINPQITETAGDTVFMDEQCLSIPDTPMPVARPEAVQLRWANRDGG 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +    DG+LA C+QHELDHLNG +  DH S   R  + 
Sbjct: 121 LETAPFDGILARCIQHELDHLNGTVIFDHQSPEVRAELE 159


>gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4]
 gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4]
 gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
          Length = 171

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 101/168 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PD  L      I++I  DI  L  +M+E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREVLKYPDERLAIECDDIDEITDDIRQLAADMVETMYREDGIGLAAPQVGANCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R++ M FINP++    D+    +EGCLS+P  RA V+R   + +   D +   
Sbjct: 61  DVSGPEKRESLMTFINPRLEPLGDEKVESEEGCLSVPALRAKVERHERVRLTARDLDGNE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA CLQHE+DHL G LFID +SRLKR +   K+ K ++ R
Sbjct: 121 VCMDADGLLAICLQHEIDHLGGTLFIDRISRLKRSLYDAKVKKWLKAR 168


>gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110]
 gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110]
          Length = 169

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             +    +PILR+ ++ +  I  + +  LID +L       G+G+AA Q+   YRL ++ 
Sbjct: 6   LEIAQVGNPILRQQAQYVTDITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIVC 65

Query: 63  LQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                    A    P V INP +++ S++     EGCLS+P  R  V R   ITV Y+D 
Sbjct: 66  SHPNSRYPDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRYQKITVEYLDR 125

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +         +A   QHELDHLNGILFID ++
Sbjct: 126 YGKLHQQEFTDFVARIFQHELDHLNGILFIDRVN 159


>gi|297623929|ref|YP_003705363.1| peptide deformylase [Truepera radiovictrix DSM 17093]
 gi|297165109|gb|ADI14820.1| peptide deformylase [Truepera radiovictrix DSM 17093]
          Length = 212

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 30/197 (15%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +  F DP+LR+V+RP+   + ++  L  +M+E M+  +G+GLAA QIG+  RL V 
Sbjct: 1   MKYHIRYFGDPVLRKVARPVTHFDGELETLAKDMIETMFEANGVGLAAPQIGLSKRLFVA 60

Query: 62  --------------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95
                                     + ++        V +NP+II  S           
Sbjct: 61  LELAPRAAEEAAGQEGEAEAEALSPDEKRERWGVVAEHVMVNPEIIARSGTQYGVDGCLS 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
               +   +KR   + VRY D         A+G  A  +QHELDHL+G+LF D L   +R
Sbjct: 121 VPGLFIEKMKRDRTVRVRYQDLQGAWHEREAEGHFAHVIQHELDHLDGVLFFDRLPEAER 180

Query: 156 DMIT----KKMSKLVQL 168
                   +++++L + 
Sbjct: 181 RAFMEAHRRELAELQRQ 197


>gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
 gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
          Length = 154

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 96/148 (64%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++D       +  +NP+II    +    +  CLS+P++ A+VKR A + V+Y+D N  
Sbjct: 61  VDVRDEDGL---IKLVNPEIIEKDGEQVGVEG-CLSVPNFNANVKRPAHVVVKYLDENGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A+GL A  L HE+DHLNGILFID
Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGILFID 144


>gi|111222219|ref|YP_713013.1| peptide deformylase 2 [Frankia alni ACN14a]
 gi|111149751|emb|CAJ61443.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [Frankia
           alni ACN14a]
          Length = 190

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+    DP+LR  +  +   ++ +  L+ +M++ MY   G+GLAA QIGV  R+ V D
Sbjct: 1   MLPIRTVGDPVLRTPTALVTTFDAALARLVHDMIDTMYDAPGVGLAAPQIGVGLRVFVFD 60

Query: 63  LQDHAHRKNPMVFINPKI-----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +                +     +    +    QEGCLS+P       R+   +VR +D 
Sbjct: 61  VGYDPRDVTVPRVPRVVVNPVLELAADGEQQEGQEGCLSVPGLHFSTTRALRASVRGVDV 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                    +GLLA C QHE+DHL+G L++D L+  +R    + + +
Sbjct: 121 TGAAVEYAGEGLLARCFQHEVDHLDGTLYLDRLTGEERRAAVQALRE 167


>gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
           9303]
          Length = 181

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 7/157 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   +P LR+VS+ ++ ++++++ +LI ++ + + +  G GLAA QIG+  R+V
Sbjct: 1   MAVKEILRMGNPQLRQVSKVVDDVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      + INP +     D     EGCLS+P  R  V R + I  R
Sbjct: 61  LFGGGGPNPRYPEAPSIPQTLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++ +        +G  A  +QHE DHL+G+LF D L
Sbjct: 121 ALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRL 157


>gi|56698049|ref|YP_168420.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679786|gb|AAV96452.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 165

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRRCLPWPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R       NP+I+  S +   + E   ++P   A +KR   +TVR+++   Q
Sbjct: 61  VDGSSERGRAV--RLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFLNEQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K  KL
Sbjct: 119 VDRRDFVGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARKL 163


>gi|227549209|ref|ZP_03979258.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078663|gb|EEI16626.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 166

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L     P+ + +  +  L+ ++L  M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLNSAVAPVTRFDEALRVLVCDLLNTMDDAGGVGLAANQVGVDARVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D Q           INP   +  D+  + +EGCLS+P     V R   +  R +D + +
Sbjct: 61  FDCQG-----MRGHIINPSWASAGDEVQIGREGCLSVPGISGPVSRYNRVVARGVDADGR 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I   GLLA C+QHE DHL+GI+F+  +    R    
Sbjct: 116 PLAISGTGLLARCIQHESDHLDGIMFMRRMDSAARKEAM 154


>gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus]
 gi|39930852|sp|Q7VQC0|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus]
          Length = 175

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++R +  I+ D   +I +M E MY   GIGLAA Q+ +  +++V
Sbjct: 1   MSILQMLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL ++  ++   VFINP II      +   EGCLSIP  RA V RS  I V+ +D N  
Sbjct: 61  IDLNNNIQKRL--VFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  + A  LL+ C+QHE+DHL G LFID+LS  K   I KK++K
Sbjct: 119 NFEMEATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINK 162


>gi|288925815|ref|ZP_06419746.1| peptide deformylase [Prevotella buccae D17]
 gi|288337470|gb|EFC75825.1| peptide deformylase [Prevotella buccae D17]
          Length = 186

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V+  I      +  LI +M E + +++G+GLAA QIG   R+ VI
Sbjct: 1   MILPIYIYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFS-------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL   +             I                +EGCLSIP    +V R   I V+Y
Sbjct: 61  DLDVLSDDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  +++ +
Sbjct: 121 RDTDFVEHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 175


>gi|302544000|ref|ZP_07296342.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461618|gb|EFL24711.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 205

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             + + +  + +L R  + +      ++  LID+M   MY  DG GLAA Q+GV  RL V
Sbjct: 16  SVRRITVVGEEVLSRPCQEVTTFGTPELAALIDDMFLTMYVADGAGLAANQVGVDLRLFV 75

Query: 61  IDLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D  D    ++    +NP                EGCLS+P     V R+    VR  D 
Sbjct: 76  YDCPDETGARHVGHILNPVLDLPDPGDRRLVDDIEGCLSVPGAAMAVPRTDRAVVRGFDK 135

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +    +I   G  A CLQHE DHL G L++D LS+  R    ++M +
Sbjct: 136 DGNPLVIEGQGYFARCLQHETDHLMGHLYLDRLSQRDRKDALRQMEE 182


>gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109]
 gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109]
          Length = 201

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ +R I K+N  +  L  +ML  MY+  GIGLAA Q+G+  +L+VIDL
Sbjct: 31  LEIHTLGDEVLRQSARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + 
Sbjct: 91  DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGL+A C+QHE+DHLNG+LF+D ++    D + K++ +
Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTDE--DGLQKELKE 189


>gi|328951365|ref|YP_004368700.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
 gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
          Length = 197

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 17/183 (9%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P+ ++ DPILRR + P+E  +  I  L +N+ E M+   G+GLAA Q+G+  RL 
Sbjct: 4   MATIYPIRLYGDPILRRRALPVEAFD-GIPELAENLFETMFEAGGVGLAAPQVGISRRLF 62

Query: 60  VIDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           V                 +  K   V +NP I          +        Y  +V R  
Sbjct: 63  VAAEYLDEEEEAEDTPLKSRVKQLYVMVNPVITYREGHQVGTEGCLSLPGLYSDEVPRDL 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI----TKKMSK 164
            + V+Y D   + +++ A+G LA  +QHELDHL G LFID L    R         ++++
Sbjct: 123 RVRVQYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDRLPPEARRAFINEHRAELAE 182

Query: 165 LVQ 167
           + +
Sbjct: 183 MQR 185


>gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
 gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
 gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276]
 gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s]
 gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923]
 gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1]
 gi|6831532|sp|O84357|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123606946|sp|Q3KM05|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687417|sp|B0B7S2|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687475|sp|B0BBY7|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
 gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis]
 gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis]
 gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
 gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768]
 gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222]
 gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074]
 gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301]
          Length = 181

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 1   MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 61  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173


>gi|282863154|ref|ZP_06272214.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282562136|gb|EFB67678.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 166

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 63/141 (44%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  DP+L      +      +  L+++M   MY+  G+GLAA QIGV  R+ V D  D  
Sbjct: 3   LLGDPVLHSPCEEVTDFGPSLARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDD 62

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             ++    +NP  +          EGCLS+P   A   R     V       +   +   
Sbjct: 63  EVRHLGHLVNPVCVEADGITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGT 122

Query: 128 GLLATCLQHELDHLNGILFID 148
           G  A CLQHE DHL+G ++ D
Sbjct: 123 GWFARCLQHECDHLDGTVYPD 143


>gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group]
          Length = 260

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 86/167 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 58  LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 117

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP +   S    VY+E CLS P   A+V R   + +   D       
Sbjct: 118 AGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 177

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +   GL A   QHE DHL GILF D +S    + + + +  L +  +
Sbjct: 178 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 224


>gi|314923773|gb|EFS87604.1| peptide deformylase [Propionibacterium acnes HL001PA1]
          Length = 200

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + + +L   +RP+ + + D+  L+ +M   M +TDG+GLAA Q+GV   L V 
Sbjct: 20  SLRRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNATDGVGLAATQVGVDLSLFVY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118
              D  +  +   F NP +          +        +      + R    T    D  
Sbjct: 80  ICPDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +   G  A CLQHE DH NGI+F D LS+  R  + ++
Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182


>gi|282863355|ref|ZP_06272414.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282561690|gb|EFB67233.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 219

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             + + +  + +L R  + +    +  +  LID+M   MY  DG GLAA Q+ V  RL V
Sbjct: 36  SVRRITVVGEEVLSRPCQEVTSFGSPGLAALIDDMFVTMYVADGAGLAANQVDVDLRLFV 95

Query: 61  IDLQDHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D  D    ++    +NP   +    S       EGCLS+P     + R+   TVR  D 
Sbjct: 96  YDCPDDQGVRHVGHIVNPVLDQPDPGSRRLVDDSEGCLSVPGASMTLPRTDRATVRGFDK 155

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +    +I   G  A CLQHE DHL G  ++D LS+  R    ++M +
Sbjct: 156 DGNPLVIEGTGYFARCLQHESDHLVGHTYLDRLSKRDRKDALRQMEE 202


>gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 171

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 1/164 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  L+++S  ++ I  DI NL   M++ MY  +GIGLAA Q+G L RL+V+
Sbjct: 1   MSLKILQYPDISLQKISLEVQDITQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+     + + +V INPKI    D  F   +EGCLS+PDYR+ VKR A + +  +D ++ 
Sbjct: 61  DVSGPEQKSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDSN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+GLL+ CLQHE+DHL+G LFID +S LKR +   ++ K
Sbjct: 121 PVSFEAEGLLSVCLQHEIDHLDGKLFIDRVSYLKRKLYDGRLKK 164


>gi|88607030|ref|YP_505871.1| peptide deformylase [Anaplasma phagocytophilum HZ]
 gi|88598093|gb|ABD43563.1| peptide deformylase [Anaplasma phagocytophilum HZ]
          Length = 187

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 16/185 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +PLV+ PD  L   S  + + +      +L+++M + MY+  GIGLAAVQ+GV  R+
Sbjct: 1   MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRI 60

Query: 59  VVIDLQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            VIDL                      PMV INP+I+  S D    +EGCLS+PD R  V
Sbjct: 61  FVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQRELV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            R   I ++Y D + + +I+ A GLL+ CLQHE+DHLNG +F+ H+S+LKRD++ +KM K
Sbjct: 121 VRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQKMRK 180

Query: 165 LVQLR 169
              LR
Sbjct: 181 AASLR 185


>gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group]
          Length = 267

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 87/167 (52%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 78  LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 137

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP +   S    VY+EGCLS P   A+V R   + +   D       
Sbjct: 138 AGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 197

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +   GL A   QHE DHL GILF D +S    + + + +  L +  +
Sbjct: 198 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 244


>gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group]
 gi|75251983|sp|Q5VNN5|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B;
           Short=PDF 1B; Flags: Precursor
 gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group]
 gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group]
 gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group]
 gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group]
 gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 269

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 87/167 (52%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 78  LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 137

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP +   S    VY+EGCLS P   A+V R   + +   D       
Sbjct: 138 AGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 197

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +   GL A   QHE DHL GILF D +S    + + + +  L +  +
Sbjct: 198 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 244


>gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 187

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54
           +  P+ I+   +LR+V++ I     ++  LI NM E M ++DGIGLAA QIG       V
Sbjct: 1   MILPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              ++     ++   +   +  +   I         +EGCLS+P     V R   I ++Y
Sbjct: 61  DLDVLAETYPEYKGYRKAFINPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D + +    + +G L   LQHE+DHL+GILF DHLS  ++ +I  K+  L+Q +
Sbjct: 121 VDEDLKPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175


>gi|237755423|ref|ZP_04584049.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692423|gb|EEP61405.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 177

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
            + I+PDPIL+  ++ ++  +  +   I+ M E MY  +G+GLAA QIG+ Y+++VID  
Sbjct: 4   KIRIWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTS 63

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                 ++       MV INPKI+    +    +  CLS P  +  + R+  + V   + 
Sbjct: 64  LRENRSEEETEPPVKMVLINPKIVEKEGEVQSTEG-CLSFPGVQITIPRAKRVKVVGKNE 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +   I +   LA  LQHE+DHLNGI FI++LS LKR ++  K  K ++  +
Sbjct: 123 KGEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175


>gi|310815112|ref|YP_003963076.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753847|gb|ADO41776.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 163

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++P P+LR+ +  +E I  +I  L D M+E M +  G+GLAAVQ+GV   L V+
Sbjct: 1   MHRPFVMWPAPVLRKPAAQVEAITPEITALWDEMVEAMDAMPGVGLAAVQLGVPLALAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   R   +   NP+I+  S     ++E   ++P   A + R   +TVR+++   + 
Sbjct: 61  DASD--ARGQAIRMANPEILHASVQLREHEEASPNLPGISAVISRPRAVTVRFLNAWGEV 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +     GL AT +QH++DHL G ++ D LS++KRDM  +K  K
Sbjct: 119 EERDLVGLWATSMQHQIDHLAGKMYFDRLSKIKRDMFLRKARK 161


>gi|260578786|ref|ZP_05846693.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603084|gb|EEW16354.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
          Length = 168

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +  F DP+L+ V+ P++     ++    L+++MLE M    G+GLAA QIG+  R
Sbjct: 1   MTVLNMRYFGDPVLKTVADPVKPEQIQDAATRRLVEDMLETMDHYGGVGLAANQIGITRR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + V D             INP      D+     EGCLSIPD   DV R+  + +R +  
Sbjct: 61  IFVFDCDGDRG-----HVINPTWEAVGDETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +        L+A C+QHE DHL+G LFI HLS  +R    K++ +
Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGTLFIQHLSAEQRREAMKQIRE 162


>gi|20807950|ref|NP_623121.1| peptide deformylase [Thermoanaerobacter tengcongensis MB4]
 gi|23396539|sp|Q8R9T0|DEF_THETN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 159

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++P+ +INS I+ ++++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MAIRYIRKIGDPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +            EGCLSIP    +VKR   + VRY+D    
Sbjct: 61  IDVGEGLLELINPEIVYEEGEQIGP------EGCLSIPGVFGEVKRPQKVKVRYLDREGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHL G+LF+D + R 
Sbjct: 115 VKEIVGEDLLARALCHEIDHLEGVLFVDKVIRF 147


>gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
          Length = 162

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    PIL+ V+ P+E +N  +  LI++M + MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D       +  INP+II         +  CLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  V---DDHAGSGLIALINPEIIHGEGSQIGLEG-CLSVPGYFGDVERFEKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +I A+G LA   QHE+DHL G LFI+  + L+R
Sbjct: 117 KVMIKAEGFLARIFQHEIDHLEGHLFIEKATNLRR 151


>gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 187

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54
           +  P+ I+   +LR+V++ I     ++  LI NM E M ++DGIGLAA QIG       V
Sbjct: 1   MTLPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              ++     ++   +   +  +   I         +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLAETYPEYKGYRKAFINPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D + Q    + +G L   LQHE+DHL+GILF DHLS  ++ +I  K+  L+Q +
Sbjct: 121 VDEDLQPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175


>gi|170754628|ref|YP_001782053.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|169119840|gb|ACA43676.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
          Length = 147

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MY+ +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I  +            EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 EVVLEGEDLLARAFCHEIDHLDGVLFVDKV 144


>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans]
          Length = 315

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++ +PDP LR  +  I +    +  L D M +VMY  DG GLAA Q+G+ YRL+V + 
Sbjct: 122 LNVIKYPDPRLRTENEKITEFGKPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMVFNP 181

Query: 64  Q-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           Q D   +   MV  NP+II+  ++   ++EGCLS P  R  V+R   + +R  D   +  
Sbjct: 182 QGDRRKKDTEMVLANPEIISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKGEDI 241

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
               +G  A   QHE DHL+G LF D +   +   I  K+
Sbjct: 242 EFELEGFTARVFQHEYDHLSGTLFHDRMPDKEVAEIHAKL 281


>gi|54024621|ref|YP_118863.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54016129|dbj|BAD57499.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 190

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I  DP L   ++P+   + ++  L+D++ + + + +G GLAA QIG    + V
Sbjct: 1   MAIRPILIAGDPRLTTPAQPVTVFDDELAALVDDLFDTLAAAEGAGLAANQIGDPRAVFV 60

Query: 61  IDLQDHAHRKNPMVFIN----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            DL DH HR   +V         +     D     EGCLS+P       R+    V  +D
Sbjct: 61  YDLVDHGHRYRGVVVNPVAETSALPETMPDPEGDLEGCLSVPGEWYPTGRADRARVTGLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMIT 159
                  +   G LA CLQHE DHL G L+++ L    +R  R MI 
Sbjct: 121 ATGAPITVEGTGYLARCLQHETDHLAGRLYLERLLGRHARAARRMIK 167


>gi|163815237|ref|ZP_02206614.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759]
 gi|158449432|gb|EDP26427.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759]
          Length = 155

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  RP+ K++   + LID+M + MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNIRLDGDDILRKTCRPVTKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     NP+  INP+II    +    +EGCLS+P     V R   +  +  D N +
Sbjct: 61  IDVCDD----NPLCLINPEIIEADGE-QTGEEGCLSLPGKFGTVTRPMHVVCKAYDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HELDHL+G L+ D
Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKD 143


>gi|119383397|ref|YP_914453.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373164|gb|ABL68757.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 166

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 94/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + + D  L   + P+  I   +  + D+M++ M +  G+GLAA QIG++ RL V
Sbjct: 1   MTVRPFLPYADRRLHLPAEPVPAITETVRMIWDDMIDTMEAMPGVGLAAPQIGIMQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   +       NP+++  S     ++E   ++P   A ++R   +TVR+++ + +
Sbjct: 61  VDASEKRGQAV--RMANPEVLHASVQLRAHEEASPNLPGVSARIERPRAVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +     GL AT +QH++DHLNG L++D+LS L+R M+  K +K  +
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRLYVDYLSPLRRKMLVAKSAKFAR 165


>gi|188589463|ref|YP_001920560.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|251778927|ref|ZP_04821847.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|238689669|sp|B2V4B1|DEF_CLOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188499744|gb|ACD52880.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|243083242|gb|EES49132.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 147

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R +EKI+  ++ LI +MLE MY  DG+GLAA Q+G+L RL +
Sbjct: 1   MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          ++           V +EGCLS+P     V R  ++  R ++   +
Sbjct: 61  VDIGDGPLVFINPEILDTDGK------QVDEEGCLSLPGKTEPVMRPNYVKARALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+ LLA  + HE DHLNG LFID  ++
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146


>gi|261344111|ref|ZP_05971755.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282567702|gb|EFB73237.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 168

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  LID+++E MYSTD  IGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIKCAPVTDF-AAVQTLIDDLIETMYSTDTGIGLAAPQIAETKAIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   R  PMVFINP+II    + S  +  CLS+PD  ADV R   + V+  D + 
Sbjct: 60  VIDISEE--RNQPMVFINPEIIESEGETSYQEG-CLSVPDVYADVPRFQRVKVKAFDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I+ +D  LA  +QHE+DHLNG +FIDHLS LKR+M
Sbjct: 117 NEFIVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154


>gi|23500203|ref|NP_699643.1| peptide deformylase [Brucella suis 1330]
 gi|83269660|ref|YP_418951.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|161511169|ref|NP_541790.2| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|161620522|ref|YP_001594408.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163844620|ref|YP_001622275.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|189022926|ref|YP_001932667.1| peptide deformylase [Brucella abortus S19]
 gi|225686258|ref|YP_002734230.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|254691174|ref|ZP_05154428.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254698957|ref|ZP_05160785.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699710|ref|ZP_05161538.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254702846|ref|ZP_05164674.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254706033|ref|ZP_05167861.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254711667|ref|ZP_05173478.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732404|ref|ZP_05190982.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256015237|ref|YP_003105246.1| peptide deformylase [Brucella microti CCM 4915]
 gi|256029699|ref|ZP_05443313.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043351|ref|ZP_05446286.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059334|ref|ZP_05449536.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111642|ref|ZP_05452632.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157852|ref|ZP_05455770.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253186|ref|ZP_05458722.1| peptide deformylase [Brucella ceti B1/94]
 gi|256256360|ref|ZP_05461896.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262606|ref|ZP_05465138.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544911|ref|ZP_05820732.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260564557|ref|ZP_05835042.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260568243|ref|ZP_05838712.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756775|ref|ZP_05869123.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str.
           870]
 gi|260760206|ref|ZP_05872554.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str.
           292]
 gi|260763444|ref|ZP_05875776.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882591|ref|ZP_05894205.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68]
 gi|261220293|ref|ZP_05934574.1| peptide deformylase-like protein [Brucella ceti B1/94]
 gi|261313474|ref|ZP_05952671.1| peptide deformylase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|261319290|ref|ZP_05958487.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94]
 gi|261323293|ref|ZP_05962490.1| peptide deformylase-like protein [Brucella neotomae 5K33]
 gi|261750174|ref|ZP_05993883.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513]
 gi|261753446|ref|ZP_05997155.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686]
 gi|265986710|ref|ZP_06099267.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1]
 gi|265989773|ref|ZP_06102330.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993119|ref|ZP_06105676.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996360|ref|ZP_06108917.1| peptide deformylase-like protein [Brucella ceti M490/95/1]
 gi|54036957|sp|P63920|DEFL_BRUSU RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|54040933|sp|P63919|DEFL_BRUME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|23463805|gb|AAN33648.1| polypeptide deformylase [Brucella suis 1330]
 gi|82939934|emb|CAJ12948.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|161337333|gb|ABX63637.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675343|gb|ABY39453.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|189021500|gb|ACD74221.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|225642363|gb|ACO02276.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|255997897|gb|ACU49584.1| peptide deformylase [Brucella microti CCM 4915]
 gi|260098182|gb|EEW82056.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152200|gb|EEW87293.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154908|gb|EEW89989.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670524|gb|EEX57464.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str.
           292]
 gi|260673865|gb|EEX60686.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676883|gb|EEX63704.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str.
           870]
 gi|260872119|gb|EEX79188.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68]
 gi|260918877|gb|EEX85530.1| peptide deformylase-like protein [Brucella ceti B1/94]
 gi|261298513|gb|EEY02010.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94]
 gi|261299273|gb|EEY02770.1| peptide deformylase-like protein [Brucella neotomae 5K33]
 gi|261302500|gb|EEY05997.1| peptide deformylase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|261739927|gb|EEY27853.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513]
 gi|261743199|gb|EEY31125.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686]
 gi|262550657|gb|EEZ06818.1| peptide deformylase-like protein [Brucella ceti M490/95/1]
 gi|262763989|gb|EEZ10021.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000442|gb|EEZ13132.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092392|gb|EEZ16645.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264658907|gb|EEZ29168.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1]
          Length = 164

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|269958379|ref|YP_003328166.1| peptide deformylase [Anaplasma centrale str. Israel]
 gi|269848208|gb|ACZ48852.1| peptide deformylase [Anaplasma centrale str. Israel]
          Length = 199

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 17/180 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              PLV  PD  L   S  +  +     +  L ++ML+ MY   GIGLAAVQ+GV  R+ 
Sbjct: 13  SVLPLVTLPDSRLSLCSEEVHADDFGQQLETLANDMLDTMYHNKGIGLAAVQVGVHKRIF 72

Query: 60  VIDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           V+DL+               +      P V +NP I+  S+     +EGCLS+PDYR  V
Sbjct: 73  VVDLEYGSDRYEVPRDDGAGEFRATCGPTVVVNPVIVEESERLVAMEEGCLSVPDYRETV 132

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +R   I V+Y+D N + + I A GLLA CLQHELDHLNG++F+  +S+LKRDM+ +K+ +
Sbjct: 133 RRPESIVVQYVDLNRRQKYIKACGLLARCLQHELDHLNGVVFLQRISKLKRDMVMEKIRR 192


>gi|170759595|ref|YP_001787825.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406584|gb|ACA54995.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 147

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MYS +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I  +            EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144


>gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
           DSM 18315]
          Length = 185

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  +     D+  L+ NM E MY+ DG+GLAA Q+G+  RL+VI
Sbjct: 1   MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D           +      INP  +  S++    +EGCLS+P     V RS  + V+Y+D
Sbjct: 61  DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++ 
Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172


>gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 177

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
            +  +PDPIL+  ++ ++  +  +   I+ M E MY  +G+GLAA QIG+ Y+++VID  
Sbjct: 4   KIRTWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTS 63

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                 ++ A     MV INPKI+    +    +  CLS P  +  + R+  + V   + 
Sbjct: 64  LREKRSEEEAEPPVKMVLINPKIVEKEGEVQSTEG-CLSFPGVQITIPRAKRVKVVGKNE 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +   I +   LA  LQHE+DHLNGI FI++LS LKR ++  K  K ++  +
Sbjct: 123 KGEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175


>gi|281423116|ref|ZP_06254029.1| peptide deformylase [Prevotella oris F0302]
 gi|281402452|gb|EFB33283.1| peptide deformylase [Prevotella oris F0302]
          Length = 187

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I      +  LI +M E + +++GIGLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60

Query: 62  D-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           D         ++   +   +  +             +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLSDDYPEYKGLRKAFINAHILEFDEESPKETMEEGCLSLPGLSEKVTRPTRIHVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + DG LA  +QHE DHL G +FID +  L++ MI  K+  +++ +
Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175


>gi|227874915|ref|ZP_03993067.1| peptide deformylase [Mobiluncus mulieris ATCC 35243]
 gi|269976483|ref|ZP_06183468.1| peptide deformylase [Mobiluncus mulieris 28-1]
 gi|306818239|ref|ZP_07451969.1| peptide deformylase [Mobiluncus mulieris ATCC 35239]
 gi|307701754|ref|ZP_07638768.1| peptide deformylase [Mobiluncus mulieris FB024-16]
 gi|227844492|gb|EEJ54649.1| peptide deformylase [Mobiluncus mulieris ATCC 35243]
 gi|269935284|gb|EEZ91833.1| peptide deformylase [Mobiluncus mulieris 28-1]
 gi|304648978|gb|EFM46273.1| peptide deformylase [Mobiluncus mulieris ATCC 35239]
 gi|307613012|gb|EFN92267.1| peptide deformylase [Mobiluncus mulieris FB024-16]
          Length = 164

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + + +  DP+LR     I+   +  +  L++++LE +      GLAA QIGV  R  
Sbjct: 1   MAFREIRVVGDPVLRTPCEWIKDPRDPGVKQLVEDLLENVDQEGRAGLAANQIGVSLRAF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             ++          V     +    D++    EGCLS+P+     +R+ +  V  +D + 
Sbjct: 61  SWNIDGEIG----YVLNPKLVEVSQDEYQDGDEGCLSVPNLFYPTERAWYARVEGIDLDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  ++  + L+  CLQHE DHL GIL+ID L R  R    +++ K+
Sbjct: 117 KPVVVEGEELMGRCLQHETDHLEGILYIDKLERKYRKAALQQVRKM 162


>gi|3023625|sp|P94601|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601]
          Length = 187

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/148 (43%), Positives = 94/148 (63%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++ ++  LI +ML+ MYS DGIGLAA Q+G+  +L+VIDL
Sbjct: 17  LQLHYLGDRVLRQPAKRIAKVDDELRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDL 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I   S +  V QEGCLSIP+   DVKR   + + Y D N + + 
Sbjct: 77  EPDNPANPPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A  LLA C+QHE+DHLNG++F+D + 
Sbjct: 137 LKATDLLARCIQHEMDHLNGVVFVDRVD 164


>gi|300726436|ref|ZP_07059884.1| peptide deformylase [Prevotella bryantii B14]
 gi|299776284|gb|EFI72846.1| peptide deformylase [Prevotella bryantii B14]
          Length = 185

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI +M + + +++G+GLAA QIG   RLVVI
Sbjct: 1   MILPIYVYGQPVLRKVASDITPDYPELKQLIQDMFQTLDNSNGVGLAAPQIGKAIRLVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                +      +       S  +EGCLSIP    +V R   I V+YM
Sbjct: 61  DLDILKDEFPEYEGFRKVFINAHILEYDDTQESRMEEGCLSIPGLSENVVRPTRIHVKYM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + +G  A  +QHE DHL GI+++D ++ L+++MI  K+  +++ +
Sbjct: 121 DENFVEHDEWVEGYKARVMQHEFDHLEGIMYVDKVNALRKNMIGGKLKNIMKGK 174


>gi|148380464|ref|YP_001255005.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|153931783|ref|YP_001384687.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153937071|ref|YP_001388208.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|153938227|ref|YP_001391806.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|168180607|ref|ZP_02615271.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|226949863|ref|YP_002804954.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|148289948|emb|CAL84061.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927827|gb|ABS33327.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152932985|gb|ABS38484.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|152934123|gb|ABS39621.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|182668570|gb|EDT80549.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|226842477|gb|ACO85143.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|295319831|gb|ADG00209.1| peptide deformylase [Clostridium botulinum F str. 230613]
 gi|322806777|emb|CBZ04346.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 147

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MY+ +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I  +            EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144


>gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515]
 gi|158512726|sp|A2BU25|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 203

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    + +LR  ++ I K++ D  NL  +ML+ MYS  GIGLAA Q+G+   L+VID+
Sbjct: 31  LEIFKLGNDVLRTNAKRIGKVDLDTRNLAKDMLKSMYSAKGIGLAAPQVGISKELLVIDI 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  F +  + Y+EGCLSIP    +V R + I +R+ D   + + 
Sbjct: 91  NFEDSAAEPLILINPEITAFGNTLNSYEEGCLSIPGVYLNVVRPSTIKLRFSDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGLLA C+QHE+DHL G+LF+D ++   ++ +  ++ K
Sbjct: 151 MNADGLLARCIQHEVDHLRGVLFVDRVTS--KEDLKTELKK 189


>gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
 gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
          Length = 166

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+ S+ +E  N  +  L+D+M E M S DG+GLAA Q+G+L RL+V
Sbjct: 1   MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +D  ++    +     +IT  +   V +EGCLSIP  + DVKR+  I V Y   + +
Sbjct: 61  VDDRDEENQHRFYLINP--VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + I     LA  +QHE+DHL+GIL+ D   ++ R
Sbjct: 119 EEKINCKDFLARIIQHEIDHLDGILYTDRAEKMYR 153


>gi|284054434|ref|ZP_06384644.1| peptide deformylase [Arthrospira platensis str. Paraca]
 gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39]
          Length = 187

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 88/148 (59%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ + +I+ +I  L+  ML+ MYS DGIGLAA Q+GV  +++VID 
Sbjct: 17  LDIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I   S + S +QEGCLSIP    DV R   + V + D N + + 
Sbjct: 77  EPDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A  LL   +QHE+DHL G+LF+D + 
Sbjct: 137 ILATELLCRAIQHEIDHLQGVLFVDRVD 164


>gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
           43184]
 gi|154089166|gb|EDN88210.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
           43184]
          Length = 185

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  +     D+  L+ NM E MY+ DG+GLAA Q+G+  RL+VI
Sbjct: 1   MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D           +      INP  +  S++    +EGCLS+P     V RSA + V+Y+D
Sbjct: 61  DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++ 
Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172


>gi|111019610|ref|YP_702582.1| peptide deformylase [Rhodococcus jostii RHA1]
 gi|110819140|gb|ABG94424.1| peptide deformylase [Rhodococcus jostii RHA1]
          Length = 188

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I  D  L   +  +   +S++   +D++ E   +  G GLAA Q+G    + V
Sbjct: 1   MAIRPILIAGDTRLTTPAVTVTAFDSELAAFVDDLHETNTAAHGAGLAANQVGDPRAIFV 60

Query: 61  IDLQDH---AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            DL D             +       +       EGCLS+P  R    R+ +  V  +D 
Sbjct: 61  YDLIDDARRHRGHVINPVLETSPRPETMPDPDDLEGCLSVPGERYPTGRADWARVVGVDV 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-MITKKMSKLVQ 167
           + +   +   G LA CLQHE DHL G L++D L  + R+    +KM K  Q
Sbjct: 121 DNKPISVEGTGYLARCLQHETDHLAGHLYLDRL--IGRNHRAARKMIKQRQ 169


>gi|238924698|ref|YP_002938214.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|259645181|sp|C4ZEV9|DEF_EUBR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238876373|gb|ACR76080.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|291526147|emb|CBK91734.1| peptide deformylase [Eubacterium rectale DSM 17629]
 gi|291527119|emb|CBK92705.1| peptide deformylase [Eubacterium rectale M104/1]
          Length = 158

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L +V R + ++   I+ LID+MLE MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIRVEGDPVLGKVCREVTEVTPKIVTLIDDMLETMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II    + +  +  CLS+P     V R  ++  R+M  +  
Sbjct: 61  IDVGEG-----PIVMINPEIIESDGEQTGDEG-CLSVPGKAGQVTRPNYVKARFMGEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA C+ HELDHL+G L+++ + 
Sbjct: 115 EYEIEGEELLARCICHELDHLDGHLYVEKVE 145


>gi|237736610|ref|ZP_04567091.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
 gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
          Length = 169

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + + +LR V++ +E I+++I+ ++DNM+E M+   G+GLAA Q+G+  R+ V 
Sbjct: 1   MIYEIKKYGEAVLREVAQEVENIDNEILEILDNMVETMHEAKGVGLAAPQVGISKRMFVC 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   RK     I P      D    ++EGCLS+P     V+R   I + Y++   + 
Sbjct: 61  DQGDGVVRKVINPIITPMTDKLMD----FEEGCLSVPGIYKKVQRPEKIKIDYLNEKGEK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G LA  +QHE DHL+ +LF+D +S + + MI KK+  L + 
Sbjct: 117 VSEEVEGFLAIIMQHEFDHLDAVLFVDKISPMAKRMINKKLQMLKKE 163


>gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
          Length = 165

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 83/155 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP L  +  PIE+I  +I  L  +MLE MY+  G GLA  Q+G + RL V
Sbjct: 1   MSMREVLRWPDPRLAEICAPIEEITPEIEQLAADMLETMYAAPGRGLAGPQVGAMLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     ++ +P+V INP      ++     EGCLSIP    D+ R + + + +   N  
Sbjct: 61  MDAGWKENKSDPLVCINPMFQEIGEERVTNTEGCLSIPGISTDISRPSQVQMVWTGLNGG 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +   +G  A   QHE+DHL+G++  DHL    R
Sbjct: 121 RYVQSFEGAAALIAQHEMDHLDGVVTFDHLDAETR 155


>gi|57238784|ref|YP_179920.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578709|ref|YP_196921.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
 gi|58616771|ref|YP_195970.1| peptide deformylase [Ehrlichia ruminantium str. Gardel]
 gi|57160863|emb|CAH57765.1| putative peptide deformylase 1 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416383|emb|CAI27496.1| Peptide deformylase [Ehrlichia ruminantium str. Gardel]
 gi|58417335|emb|CAI26539.1| Peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
          Length = 181

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/178 (40%), Positives = 101/178 (56%), Gaps = 12/178 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV- 59
           M    LV  PD  L   S  + ++  +I  L+D+M EVM++ +GIGLAAVQ+G+  R+  
Sbjct: 1   MSTLSLVTIPDHRLSLCSEEVTEVTQEIKKLVDDMFEVMHTNNGIGLAAVQVGIHKRIFV 60

Query: 60  -----------VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                       I    +     P   INPKI+  S +    QEGCLS+PD    V R  
Sbjct: 61  ADVPVDYKDHETIKTDGYKSHGGPYCMINPKIVDMSQEKVKMQEGCLSVPDCLEYVMRPK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           ++T++Y+D N    II A G LA CL+HELDHLNGI+F+ +LS+ KRD+I +K+ K  
Sbjct: 121 YVTMQYLDYNGNKCIIKAQGWLARCLEHELDHLNGIVFLKYLSKFKRDLIVEKIRKRQ 178


>gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
 gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
          Length = 241

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
            +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V +  
Sbjct: 66  KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNAL 125

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    +
Sbjct: 126 YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHL 185

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               G+ +   QHE DHLNG LFID ++++ +  +  K+++L++
Sbjct: 186 KILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229


>gi|254712281|ref|ZP_05174092.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715352|ref|ZP_05177163.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217080|ref|ZP_05931361.1| peptide deformylase-like protein [Brucella ceti M13/05/1]
 gi|261319950|ref|ZP_05959147.1| peptide deformylase-like protein [Brucella ceti M644/93/1]
 gi|260922169|gb|EEX88737.1| peptide deformylase-like protein [Brucella ceti M13/05/1]
 gi|261292640|gb|EEX96136.1| peptide deformylase-like protein [Brucella ceti M644/93/1]
          Length = 164

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++I P+I+   ++   +QEG +S+P     V+R A I +RY D +  
Sbjct: 61  L---ELDRAAGPKIYIYPEIVWACEEKIRHQEGSVSMPGVVDKVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|88859726|ref|ZP_01134366.1| peptide deformylase [Pseudoalteromonas tunicata D2]
 gi|88818743|gb|EAR28558.1| peptide deformylase [Pseudoalteromonas tunicata D2]
          Length = 168

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M   P++   DP L   +  +  +   + +LID++L+ +Y + +GIGLAA QIG    ++
Sbjct: 1   MAVLPILTAGDPFLAVPATAVTDV-KLVESLIDDLLDTLYATDNGIGLAATQIGRKEAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL    ++      +   ++   +     +EGCLS+P YRADV R   + V  +D + 
Sbjct: 60  VIDLSAERNQPL---VLINPVVVSGEAEEKGEEGCLSVPGYRADVVRYTHVVVEALDRSG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q   I +D  LA  +QHE+DHL G LFID+LS LKR++  KK+ K V+  +
Sbjct: 117 QAVRIDSDDFLAIVMQHEIDHLKGTLFIDYLSPLKRNIALKKVKKCVKEAN 167


>gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 207

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + +     P+LR ++RP+      ++  L+ +M+E M   +G GLAA Q+   +R+V
Sbjct: 1   MAIRKIARMGHPVLRGIARPVPDPTAPEVKALVRDMIETMIDANGAGLAAPQVYEPWRIV 60

Query: 60  VIDLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           V    +              H     V INP++   +++     EGCLS+P  R  V R 
Sbjct: 61  VFQAPESRLPEGVDETEAFDHTAPLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPRH 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +  R    N +     A G  A  +QHE DHL+GIL+   +  L   +   +  
Sbjct: 121 TELRYRGYGLNGELIERRARGFHARVIQHECDHLDGILYPQRMDDLAELIFESEAR 176


>gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 190

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 74/151 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+ +  DP+L +    +     D+  L++++   MY+  G+GLAA Q+GV  R+ V D
Sbjct: 13  VRPMSLLADPVLHKPCETVTDFGPDLGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V  +    +  
Sbjct: 73  CPDDEDVRHLGHVVNPRLVEADGVTVRGPEGCLSLPGLEAGTERFDRAVVEGVTWEGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +   G  A CLQHE DHL G+++ D L+  
Sbjct: 133 RVEGTGFFARCLQHECDHLEGLVYADRLTPW 163


>gi|331091587|ref|ZP_08340423.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403614|gb|EGG83170.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 157

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  + ++ I    + LI++M + MY   G+GLAA Q+G+L R+V 
Sbjct: 1   MAIREIRKIGDEVLTKKCKEVKTITPRTVELIEDMFDTMYDEMGVGLAASQVGILKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+II  S + +  +  CLS+P     V R  +  VR  D + Q
Sbjct: 61  IDVGEG-----PILLINPEIIETSGEQTGDEG-CLSVPGKAGQVTRPFYAKVRACDIDMQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  +GLLA    HE+DHL+G L++D + 
Sbjct: 115 PFEIEGEGLLARAFCHEIDHLDGHLYVDKVE 145


>gi|283797831|ref|ZP_06346984.1| peptide deformylase [Clostridium sp. M62/1]
 gi|291074519|gb|EFE11883.1| peptide deformylase [Clostridium sp. M62/1]
 gi|295091956|emb|CBK78063.1| peptide deformylase [Clostridium cf. saccharolyticum K10]
          Length = 159

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+  +P++++      LI++M + MY  +G+GLAAVQ+GV  ++VV
Sbjct: 1   MAIREIRTIGDEILRKECKPVKEMTPHTAELIEDMFDTMYEANGVGLAAVQVGVRKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D          +    I  +       EGCLS+P     V R  ++ V+ ++   +
Sbjct: 61  IDVEDGN-----QYVLINPEILETSGSQTGPEGCLSVPGKSGTVTRPDYVKVKALNEKME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++  +GLLA  + HE DHL G+L++D + 
Sbjct: 116 EFVLEGEGLLARAICHECDHLYGVLYVDKVE 146


>gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160]
 gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160]
          Length = 177

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R++ P++  +  ++  L+ +M E M++ +G GLAA QIGV  ++V+
Sbjct: 1   MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSK 160


>gi|88855570|ref|ZP_01130234.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815477|gb|EAR25335.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 163

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR V  PI   +     LI +++E +      GLAA QIGV  R   
Sbjct: 1   MAVREIRLFGDPVLRSVCDPITVGDPHAAALIADLIESVQIPGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            INP +   S D  +  EGCLS+P +     R  F  V  +D + Q
Sbjct: 61  YNIDGEVG-----YIINPVLAEVSGDPELVDEGCLSVPGFYFLRSRYPFARVTGVDLDGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +GL+A  LQHE DHL+G L+I+ L    +    + + K
Sbjct: 116 PVELSGEGLMAQALQHETDHLDGHLYIEGLDSETKREAMRAIRK 159


>gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243]
 gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243]
          Length = 183

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 81/162 (50%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V  P+PIL +V  P +  +  +  L   M + MY  DG GLAA Q+GV  RLVVI
Sbjct: 3   TVISIVQSPNPILNQVCDPCDLGDKSLKKLAKQMAKAMYKNDGCGLAAPQLGVAKRLVVI 62

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +NP+V +NP ++    D  V  EGCLS P     + R  F  VRY D + + 
Sbjct: 63  DCDQEEGEQNPIVLVNPVLVDTQGDPVVAGEGCLSCPGITVPIARPPFARVRYFDLDGEE 122

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             I  D LL  CLQHELDHL+GI   +    + R    +   
Sbjct: 123 WEIEGDDLLGRCLQHELDHLDGITMFERCDPMARIEALRDYE 164


>gi|254519243|ref|ZP_05131299.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 147

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D  LR+  + + +I    + LI++M + MY  DG+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIRQNGDEALRKKCKVVTEITPRTLKLIEDMADTMYEADGVGLAAPQVGILQRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    +          I       + +EGCLS+P   ADV+R  ++ V+ ++   +
Sbjct: 61  IDIYDDYGLR----VFINPEILEVSGSQLGEEGCLSVPGEVADVERPNYVKVKALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++ A  LLA  + HE DHLNG LFID+L 
Sbjct: 117 EFVLEATELLARAILHENDHLNGTLFIDYLK 147


>gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4]
 gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4]
          Length = 223

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP L   + P+ +   +I +L+ ++ + M + +G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIVILGDPALHAPTEPVTESPEEIADLVRDLYDTMDAANGVGLAANQIGVRKRVFV 60

Query: 61  IDLQD----------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
            D  D                              V    +I     D     EGCLS+P
Sbjct: 61  YDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEGCLSVP 120

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                  R+ +  V   D + +   +   GL A CLQHE+ HL+G ++ DHL    +   
Sbjct: 121 GVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHLIGRNKKAA 180

Query: 159 TKKMS 163
            + + 
Sbjct: 181 KRHIR 185


>gi|38234602|ref|NP_940369.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200866|emb|CAE50571.1| peptide deformylase [Corynebacterium diphtheriae]
          Length = 187

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P+VI  DP+L   + P+    +++ +LI +M E M +  G+GLAA Q+GV  RL V 
Sbjct: 1   MIRPIVICGDPVLHNPTAPVSDP-AEVQDLIADMYETMEAARGVGLAANQVGVGLRLFVF 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG------CLSIPDYRADVKRSAFITVRYM 115
           +  D     +    INP + T     ++  +       CLS+P       R+ +  V  +
Sbjct: 60  NCPDDEGHFHRGCVINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWARVTGL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +    +    G LA C QHE+ HL+G L+ D L    +    K + +
Sbjct: 120 EADGTPVVYEGTGFLARCFQHEVGHLDGFLYTDTLIGRWKRQAKKAIKR 168


>gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 177

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L RV++P+ K +  ++  LI ++ E M +  G+GLAA QIGV   +V
Sbjct: 1   MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I    D      EGCLS+P  R  V R   I  R 
Sbjct: 61  IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           MD         A+G  A  +QHE DHL G L+   +    R   T ++
Sbjct: 121 MDPYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168


>gi|237785573|ref|YP_002906278.1| peptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758485|gb|ACR17735.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 178

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + IF DP+L   +  +   +  +  L+D+M+E M    G GLAA Q+GVL R+ V
Sbjct: 1   MSLRRIRIFGDPVLTTPAEQVTDFDEPLGILVDDMMETMDHYRGAGLAANQVGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +             +NP      D+     EGCLS+P   A+ +R   ++V     +  
Sbjct: 61  YNCGGRRG-----HIVNPVWKHEGDETQYGPEGCLSVPSIHANTRRWMNVSVTGQTVDGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                ADG+LA C+QHE DHL+G++++  L    R     ++ 
Sbjct: 116 PVSFSADGILARCIQHETDHLDGVMYMRRLEPEIRKETMAQIR 158


>gi|299140626|ref|ZP_07033764.1| peptide deformylase [Prevotella oris C735]
 gi|298577592|gb|EFI49460.1| peptide deformylase [Prevotella oris C735]
          Length = 187

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I      +  LI +M E + +++GIGLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60

Query: 62  D-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           D         ++   +   +  +             +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLSDDYPEYKGLRKAFINAHILEFDEDSPKETIEEGCLSLPGLSEKVTRPTRIHVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + DG LA  +QHE DHL G +FID +  L++ MI  K+  +++ +
Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175


>gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 185

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 4   KPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +P+V +  +P+L R   P+     D+  L+ +M   M + DG+GLAA QIGV  R+ VID
Sbjct: 12  RPIVTYGSNPVLHRPCAPVTAFGKDLRRLVLDMFASMEAADGVGLAANQIGVDARVFVID 71

Query: 63  LQDHAHRKNPMVFINPKIITFSDDF-----SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
             D          +NP++             V  EGCLS+P   A++ R+    V  +D 
Sbjct: 72  CPDADGEDVVGYVVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGVDA 131

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +     I A G+ A CLQHE+DHL+G +++D L    R+ +  +
Sbjct: 132 DGAPVSIEATGMAARCLQHEVDHLDGTVYVDRLPGDLRERLLAE 175


>gi|157962208|ref|YP_001502242.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157847208|gb|ABV87707.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 163

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R + P+  I   +   ID+++E MY   DGIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  PMV INP+I+    ++   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSEE--RDQPMVLINPEIVESRGEYQG-EEGCLSIPGYRAKVNRHEGVKVSALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHLNG++F DHLS LK+ +  KK+ K  
Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKKYR 163


>gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 179

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L RV++P+   +  ++  L+ +M   M S DG GLAA QIGV  ++V
Sbjct: 1   MTIREILKMGDARLLRVAKPVTAFDTDELHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I   S D     EGCLS+P  R  V R + I   
Sbjct: 61  IFGSDQLNPRYPAAPVVPRTVLVNPVITPLSADEESDWEGCLSVPGLRGMVPRFSHIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DHL G L+   +  L
Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLIGKLYPMRIRDL 160


>gi|284991544|ref|YP_003410098.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284064789|gb|ADB75727.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 177

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   + ++  L+ ++ + M++  G GLAA QIGV  R+  
Sbjct: 1   MSVTPIRLLGDPVLRTPAAPVVDFDQELRRLVADLTDTMFAAGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP++    ++     EGCLSIP Y  D +R  ++     D + +
Sbjct: 61  WYVDGEVG-----HLVNPEVTPVGEETEEGPEGCLSIPGYTFDCRRHLYVAATGFDLHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    LLA  +QHE+DHL+G+LF+D L 
Sbjct: 116 PVRVEGSHLLARAVQHEVDHLDGVLFVDRLD 146


>gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328]
 gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328]
          Length = 187

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 88/148 (59%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ + +I+ +I  L+  ML+ MYS DGIGLAA Q+GV  +++VID 
Sbjct: 17  LDIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I   S + S +QEGCLSIP    DV R   + V + D N + + 
Sbjct: 77  EPDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRS 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A  LL   +QHE+DHL G+LF+D + 
Sbjct: 137 ILATELLCRAIQHEIDHLQGVLFVDRVD 164


>gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 209

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L R + P+      +I  L  +M+E M    G+GLAA Q+    R+ 
Sbjct: 29  MSILKIARMGHPVLLRRADPVPDPTAPEIQRLALDMIETMIDAPGVGLAAPQVYQSLRMF 88

Query: 60  V--IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V  + +       +P V INP++    D+  +  EGCLSIP +R +V R+  +  R +  
Sbjct: 89  VFRVPVSRGGEEVSPTVLINPELEWVGDEIQMCWEGCLSIPGFRGEVPRAMRVRYRGIGL 148

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +       A G  A  +QHE DHL+GIL+   ++ L R    +++
Sbjct: 149 DGAVIEREASGFHANVIQHEYDHLDGILYPMRMNDLGRLGFEEEI 193


>gi|127513031|ref|YP_001094228.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126638326|gb|ABO23969.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 163

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P+E I + +   ID+++E MY   DGIGLAA Q+G  + ++
Sbjct: 1   MPVLDILTIPDERLKRKAKPVEDI-AAVQGFIDDLIETMYHTDDGIGLAATQVGSEHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  PMV INP+ +  S +    +EGCLSIP YRA V R   + V+ ++   
Sbjct: 60  VIDLSED--RDQPMVVINPEFVERSGEIVG-EEGCLSIPGYRAKVTRFEKVKVKALNREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I +D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 EAFEIESDDFLAIVLQHEMDHLDGKVFIEHLSPLKQQIALKKVKKYR 163


>gi|77920127|ref|YP_357942.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77546210|gb|ABA89772.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 167

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 97/167 (58%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  K ++++P P L+ +  P+ + + ++ +LI ++++ M +    +G+AA QIG+  R+V
Sbjct: 1   MAVKDILLYPHPALKEICTPVTQCDENVDSLIQDLIDTMVAAGHSVGVAAPQIGITRRVV 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D+      +        +    I   +  +  +EGC+S+PDY  +V R+  + V+Y+D
Sbjct: 61  VVDVSHSKLGRKENHGLIVMINPEILEQEGRTASREGCMSVPDYTGNVTRAESVVVQYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +   Q+I A G  A  LQHE+DHL+G+LF+D +S LK D+  +K  
Sbjct: 121 RSGNKQVIRATGFEAIALQHEIDHLDGLLFLDRVSSLKTDLFRRKKR 167


>gi|313113575|ref|ZP_07799163.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624090|gb|EFQ07457.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 178

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L RL V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTTFDDRLATLLDDMHETMIAADGVGLAGPQVGMLRRLFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S++     EGCLS P +   V R A + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D + +   + A+ LL  C+QHE DHL+GI  + 
Sbjct: 121 AQDRHGEWFELEAENLLGRCIQHENDHLDGITIMQ 155


>gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A]
 gi|158512738|sp|A2BZN6|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           NATL1A]
          Length = 202

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D  LR  +  I K++  I  L  +ML  MYS+ GIGLAA Q+G+  RL+VIDL
Sbjct: 31  LKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   PMVFINP+II+ S     Y+EGCLSIP    +V R + I + Y D   + + 
Sbjct: 91  NFEDPNSPPMVFINPEIISSSATVDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           + ADGL+A C+QHE+DHLNG+ F+D ++        +++ K +   +
Sbjct: 151 MNADGLMARCIQHEIDHLNGVCFVDKVTD------EEELKKQLNENN 191


>gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9]
 gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9]
          Length = 218

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 89/143 (62%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I KI+ ++  LI +ML+ MYS DGIGLAA Q+GV  +LVVID      
Sbjct: 50  LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 109

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I   S +  V QEGCLSIP    +VKR   + + Y D   + Q + AD 
Sbjct: 110 EIPPLVLINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 169

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+ HE+DHLNG++F+D + 
Sbjct: 170 LLARCILHEMDHLNGVVFVDRVE 192


>gi|17985009|gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
          Length = 203

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 40  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 100 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 156

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 157 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 203


>gi|121594637|ref|YP_986533.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222110774|ref|YP_002553038.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120606717|gb|ABM42457.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221730218|gb|ACM33038.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 179

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+   +   +  L+++M E M + +G GLAA QIG  +++V
Sbjct: 1   MTIRTILKMGDPRLLRVAQPVTAFDTPALHQLVNDMRETMQAVNGAGLAAPQIGEDWQVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +                 P V INP I     D     EGCLS+P  R  V R A I  R
Sbjct: 61  IFGSGERNPRYPDRPIVPPTVLINPVITPLGADEEDDWEGCLSVPGLRGKVPRFARIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +D         A+G  A  +QHE DHL G L+   +   
Sbjct: 121 GVDLLGAPIDRVAEGFHARVVQHECDHLIGKLYPMRVRDF 160


>gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 190

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/143 (44%), Positives = 89/143 (62%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I KI+ ++  LI +ML+ MYS DGIGLAA Q+GV  +LVVID      
Sbjct: 22  LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P++ INP I   S +  V QEGCLSIP    +VKR   + + Y D   + Q + AD 
Sbjct: 82  EMPPLILINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+ HE+DHLNG++F+D + 
Sbjct: 142 LLARCILHEMDHLNGVVFVDRVE 164


>gi|224825207|ref|ZP_03698313.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224602878|gb|EEG09055.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 170

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 6/157 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +K+P +    P+LR+ +  + + +   +  L+ +M +  Y+ +G+GLAA QIGV  R++V
Sbjct: 1   MKRPFLPQEHPMLRQHAAAVTEFDTPALHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A    P V INP+I   ++      EGC S+P  R  V R   I  R  
Sbjct: 61  FAYGGGERDPGAPAIPPTVLINPEIRPDAEHIEEDWEGCFSVPGQRGRVPRWQAIRYRAQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           D   +     A+G  A  +QHE+DHLNG LFIDHL  
Sbjct: 121 DIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLPP 157


>gi|32491245|ref|NP_871499.1| hypothetical protein WGLp496 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30172741|sp|Q8D258|DEF_WIGBR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25166452|dbj|BAC24642.1| def [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 152

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 3/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P+  LR+++  I  I+S+I +LI NMLE MY  +GIGLAA Q+ V  R++V
Sbjct: 1   MSVLSILNYPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+  +  +  P++ INP  I        ++EGCLSIP   A V RS  + ++ ++C  +
Sbjct: 61  IDISKN--KNKPLILINPVFINKCGA-QTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             ++ + GLLATC+QHE+DHL G LFID++  LK
Sbjct: 118 EFLLKSKGLLATCIQHEMDHLIGKLFIDYIKPLK 151


>gi|253987938|ref|YP_003039294.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica]
          Length = 168

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 5/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PD  LR+    +  +   I  LID+ML+ MY + +GIGLAA Q+G    ++
Sbjct: 1   MATLEILTIPDERLRQKCVEVTNV-EAIQGLIDDMLDTMYSTDNGIGLAAPQVGRKEAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+   A R  P++ +NPKI+         +  CLS+P Y ADV+R   + V  ++ + 
Sbjct: 60  IIDI--SATRDEPLILVNPKIVEKDRSVIGQEG-CLSVPGYYADVERFEKVKVEALNRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           +   + ++  LA  +QHE+DHL+G +FID+LS LKR M  
Sbjct: 117 ETITVESEDFLAIVMQHEIDHLHGKIFIDYLSPLKRQMAL 156


>gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             + +L R  R + +   ++++ L+D+M   MY   G+GLAA Q+GV  R+ V D  D  
Sbjct: 40  VGEEVLHRPCREVAEFGTAELLQLVDDMFLTMYVAQGVGLAANQVGVDLRVFVYDCVDDD 99

Query: 68  HRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             ++    +NPK+    +         QEGCLS+P    ++ R     +  +D + +  +
Sbjct: 100 GARHVGHIVNPKLDRTPEGGQRRLVEAQEGCLSVPGPTRELPRYDHAVLHGVDVHGEPLV 159

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +  +G  A CLQHE DHL G L+ID +++  R  + ++M+++ 
Sbjct: 160 LEGEGYFARCLQHETDHLEGTLYIDRMNKKTRRGVLEEMAEVA 202


>gi|254436758|ref|ZP_05050252.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252204|gb|EDY76518.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 165

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++  + +P  ILR  +  + +I  DI  L D M++ M +  G+GLAA Q+GV  RL V
Sbjct: 1   MPRRQFIPWPAKILRTPAAEVPEITDDICALWDEMIDAMDAMPGVGLAAPQLGVSLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   +       NP I+  S +  +++E   ++    A ++R   +TVR+M+    
Sbjct: 61  VDASDKRGQAI--RMANPIILHASHELRLHEEASPNLVGMSASLERPRAVTVRFMNEAGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL+G ++ D LSR KRDM+ KK  KL
Sbjct: 119 YDRQDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163


>gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134]
          Length = 177

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L + +RP+E+ N  ++  LI++M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDARLLQQARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A +    V INP +   SDD     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPKVPKTVLINPMLEMLSDDLEDGWEGCLSVPGLRGVVPRHTRLRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL GIL+   +    R
Sbjct: 121 DLMGGSIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTR 160


>gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300 [Chlorella variabilis]
          Length = 169

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 83/148 (56%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP LR  +  I   +  +  L + M EVMY  DG+GLAA Q+GV  RL+V +   
Sbjct: 13  VLRYPDPRLRAPNARIGAFDDSLRRLAEEMFEVMYEDDGVGLAAPQVGVNVRLMVFNEAG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                + +V +NP+II      ++++EGCLS P+  ADV+R + + V+  D + +   + 
Sbjct: 73  EKGAGDEIVLVNPQIINQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGKKFTVS 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
             G  A   QHE DHL+G LF D ++  
Sbjct: 133 LIGFPARIFQHEYDHLDGRLFHDRMAPE 160


>gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
           17393]
 gi|189436228|gb|EDV05213.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
           17393]
          Length = 186

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP+ ++ + +LR+    IE+   +I  +I+ M + +   DG GLAA QI +  +L ++
Sbjct: 1   MIKPITVYGNSVLRKECEDIEQNYPNIQEVIETMWQTLRDADGCGLAAPQINLPIKLFIV 60

Query: 62  DLQD---------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           + +D                        FIN KII +S+      EGCLSIPD   +V R
Sbjct: 61  NSKDTYTYMSAKEREHFFVEEDCGIEETFINAKIIAYSEKVWTAGEGCLSIPDLYEEVTR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +T+RY D   + Q     G  A  +QHE +H  G L+ID LS L++ +I  K+ +++
Sbjct: 121 PWSVTIRYQDNEFKEQNRTYYGYTARIIQHEFEHTQGKLYIDRLSPLRKQLIKNKLMRII 180

Query: 167 QL 168
           + 
Sbjct: 181 KG 182


>gi|310659160|ref|YP_003936881.1| defa [Clostridium sticklandii DSM 519]
 gi|308825938|emb|CBH21976.1| DefA [Clostridium sticklandii]
          Length = 152

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ SR ++KIN  I+ L+++M++ MY  DG+GLAA Q+GVL R+VV
Sbjct: 1   MAIRIIRTDGDEVLRKKSRAVDKINDKILELVEDMIDTMYEADGVGLAAPQVGVLKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+I+  S + +  +  CLS+P     V R  ++  +  D +  
Sbjct: 61  IDVGDG-----PIVMINPEILESSGEQTDDEG-CLSLPGKFGCVTRPYYVKAKAYDTDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++ A+ L A  + HE+DHL+GILF D + 
Sbjct: 115 EFVVEAEELFARAICHEIDHLDGILFKDKVE 145


>gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 168

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L  +  P+ +   D+  LI +M E MY+  G GLAA Q+GVL RL V
Sbjct: 1   MALLPILQWPDAGLSTLCTPVGE--EDLTRLIADMFETMYAAPGRGLAAPQVGVLKRLFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V INP+ ++   D     EGCLSIP     V R   +++R+ D +  
Sbjct: 59  MDATWKEAPGTPLVMINPEFLSVGADLESGDEGCLSIPGVLTSVPRPKTVSLRWQDQDRN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DG  A C+QHE DHL G++ ++ L+   R          ++ R
Sbjct: 119 WTSGSFDGFAARCIQHEYDHLEGLVTLNRLTPAARSEAEATYQNRLETR 167


>gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC]
 gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC]
          Length = 191

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 11  MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 70

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 71  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 130

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 131 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 183


>gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 177

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L RV++P+ K +  ++  LI ++ E M +  G+GLAA QIGV   +V
Sbjct: 1   MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I    D      EGCLS+P  R  V R   I  R 
Sbjct: 61  IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           MD         A+G  A  +QHE DHL G L+   +    R   T ++
Sbjct: 121 MDAYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168


>gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT]
 gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT]
          Length = 150

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  R +E+IN  I+ LI++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MALRNIRVEEDSILRKKCREVEEINDRILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II      + Y+  CLS+P  +  V R   +T + ++   +
Sbjct: 61  IDVGEG-----PITLINPEIIESEGSQTDYEG-CLSLPGKQGKVTRPYKVTAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I  +GLLA  + HELDHL+G LFID +
Sbjct: 115 PVEIKGEGLLARAICHELDHLDGTLFIDKV 144


>gi|297572267|ref|YP_003698041.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932614|gb|ADH93422.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+L + S  +   +  +  L  +M E   +  G+GLAA QIG+   + V 
Sbjct: 1   MLYPIHVYGSPVLHKTSAKVTVFDEKLATLAQDMFETCEAAPGVGLAAPQIGLDLAMFVW 60

Query: 62  DLQDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                 H+                +   +     +EGCLS P Y+  ++RS    +R  D
Sbjct: 61  MYDGPEHKGPQRGVAVNPTLLIEPVDVFEPGPADEEGCLSFPGYQYGLRRSPRAVLRAQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +   + A G  A  LQHE DHL G +++D L+
Sbjct: 121 EKGEWYDLEATGWFARILQHEYDHLKGRIYVDRLT 155


>gi|295399762|ref|ZP_06809743.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978165|gb|EFG53762.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 157

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P  IL +   P+++ +  ++ L+++M + M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R    + +    I  +    +  EGCLS P   A+VKR+ ++ VR  D   +
Sbjct: 61  VDVGDEHGR----IELINPRIMEARGEQIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  LQHE+DHLNG+LF   +
Sbjct: 117 PFTLKATGFLARALQHEIDHLNGMLFTSKV 146


>gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 186

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 74/148 (50%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL ++ +P+L      +      +  L++++   MY+ +G+GLAA Q+GV  R+ V D
Sbjct: 13  VRPLSLYGNPVLHTPCETVTDFGPALGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A V+R     V   D +    
Sbjct: 73  CPDDDEVRHLGHIVNPRLVAADGVEVRGPEGCLSLPGLEAPVERYDRAVVEGQDSDGGPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150
            +   G  A CLQHE DHL+G ++ D L
Sbjct: 133 RVEGTGFFARCLQHETDHLDGSVYADRL 160


>gi|325662245|ref|ZP_08150860.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086046|ref|ZP_08335129.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471497|gb|EGC74718.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406969|gb|EGG86474.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 156

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +V + +EK+      LID+M + MY   G+GLAA Q+GVL R+V 
Sbjct: 1   MAIRKIREMGDDVLTKVCKEVEKVTPRTKVLIDDMFDTMYDAMGVGLAAPQVGVLKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I  +      +EGCLS+P     V R  ++ VR  D + +
Sbjct: 61  IDVGEG------PILLINPEIIETSGEQTGEEGCLSVPGKSGVVTRPNYVKVRAFDEDMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             ++  +GLLA    HE+DHL+G L+++ +     DM  ++
Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGHLYVEKVEGELEDMYYEE 155


>gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 169

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 66/144 (45%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +   P L      +      +  L+++M   MY+ +G+GLAA QIGV  R+ V D  D  
Sbjct: 3   LLGAPALHSPCDDVTDFGPSLARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDD 62

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             ++    +NP ++    D     EGCLS+P   A   R     V       +   I   
Sbjct: 63  EVRHLGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGT 122

Query: 128 GLLATCLQHELDHLNGILFIDHLS 151
           G  A CLQHE DHL+G ++ D L+
Sbjct: 123 GWFARCLQHECDHLDGRVYTDRLT 146


>gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 160

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR++S+ +  IN  +  LI +M E M  ++G+GLAA Q+G+L R++ 
Sbjct: 1   MAIRNIRTDEDPILRKISKEVNDINDRMKTLISDMFETMDYSNGVGLAAPQVGILRRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D QD               I   D   V  EGCLS+P  +  V R+  I V YMD N +
Sbjct: 61  LDDQDGLRGA-----FINPKIIEKDGEQVGPEGCLSVPGKQGTVNRANHIVVTYMDENGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+G  A   QHE+DHLNGIL+ D
Sbjct: 116 EKTLEAEGFTARIFQHEIDHLNGILYTD 143


>gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580]
 gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580]
          Length = 173

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   +  LR+ S+P+E I+  +  LI  M   M   +GIGLAA QIG   RL ++ + 
Sbjct: 2   KVLYLGEETLRQPSKPVEHIDEALHELIREMFITMDEDNGIGLAAPQIGKNVRLFIVKID 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R      I             Y+EGCLSIP   ADV R   +TV+Y D N + + I
Sbjct: 62  DGIERVFINPLIVGTSEKQCS----YEEGCLSIPKMFADVVRPEAVTVQYQDMNGRRRTI 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---SKLVQLRD 170
            A GLLA  +QHE DHL G+LFID LS  +RD +  K     +  + R+
Sbjct: 118 EATGLLARVIQHEYDHLEGVLFIDRLSEKERDSLVAKFTQQQERKKQRE 166


>gi|317503055|ref|ZP_07961134.1| peptide deformylase [Prevotella salivae DSM 15606]
 gi|315665828|gb|EFV05416.1| peptide deformylase [Prevotella salivae DSM 15606]
          Length = 187

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I      +  LI +M E M +++G+GLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDISPDYPQLKELISDMFESMTASNGVGLAAPQIGKDIRVVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFS-------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL   +             I                +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLSDDFPEYKGFRKAFINAHVLEVDDDSPKETLEEGCLSLPGLSEKVTRPTRIHVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + +G LA  +QHE DHL G +FID +  L++ MI  K+  +++ +
Sbjct: 121 QDEDFVEHDEWVEGYLARVMQHEFDHLEGKMFIDRIPPLRKQMIYSKLKAMLKGK 175


>gi|254695522|ref|ZP_05157350.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261215912|ref|ZP_05930193.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917519|gb|EEX84380.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 164

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +Q G +S+P    +V+R A I +RY D +  
Sbjct: 61  L---ELDRAAGPKIYINPEIVWACEEKIRHQVGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
 gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
          Length = 154

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    D +L+  + P+ KI+  +  L+D+M + MY+ +G+GLAA Q+GV  R++V
Sbjct: 1   MSVLEIKKAGDKVLKEKAAPVGKIDRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          +   +I  ++      EGCLS+P    +V+R A + V  ++ + +
Sbjct: 61  VDVGDGLIE------LINPVIVAAEGSETNTEGCLSVPGVYGEVERYAQVVVEGLERSGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I   GLLA  LQHE+DHL+G+LFI+    L +
Sbjct: 115 KVRITGTGLLARALQHEIDHLDGVLFIEKAKTLYK 149


>gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168]
          Length = 187

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 8/164 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   + +LRR S P+ ++  +I  L  +M ++M    G+GLAA Q+GVL RL VI   
Sbjct: 2   KILYLGEQLLRRKSEPVNEVTDEIRRLTQDMFQLMDEAQGVGLAAPQVGVLKRLFVITAD 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R     FINP+II  S +   Y+EGCLSIP     + R A +TV+ ++ + +   +
Sbjct: 62  DGVRRV----FINPQIIATSSETCDYEEGCLSIPQIYEHITRPAKVTVQAINEHGKPFTL 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR----DMITKKMSK 164
            ADG LA  +QHE DHL+GIL+ID      R    D   KK  +
Sbjct: 118 EADGFLARIIQHENDHLDGILYIDRGDPDFRAKTIDSFEKKAER 161


>gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A]
 gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A]
          Length = 183

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 90/150 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D  LR+ ++ + KI+  I  L  +ML+ MYS++GIGLA+ Q+G+  +L+VI
Sbjct: 11  SLLDIHYLGDKDLRKSAKRVSKIDDSIRELARDMLQTMYSSNGIGLASTQVGIHKQLIVI 70

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D +       P++ INPKI  +S +  V +EGCLSIP    DV R   I V + + N + 
Sbjct: 71  DCEPELSTNAPLILINPKINYYSQELCVMEEGCLSIPGVYFDVIRPEMIQVSFKNENGRP 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I A  LLA  +QHE+DHLNG++F+D ++
Sbjct: 131 CQISATDLLARVIQHEIDHLNGVMFVDRVT 160


>gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271]
 gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271]
          Length = 156

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIDDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLQGVLFTSKVTR 148


>gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
 gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
          Length = 207

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  +P+L + + P+E+    + ++  LI +M E M    G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60

Query: 58  LVVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                      NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                R+ +  V   D N     +   G  A CLQHE  HL+G ++ D L    +    K
Sbjct: 121 GFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180

Query: 161 KMSK 164
            + +
Sbjct: 181 AIKR 184


>gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
 gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 82/150 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P   LR  + P+E  + ++  L   M ++MY T G GLAA Q+GV YR++V +   
Sbjct: 68  IAKYPAKCLRAKNAPVETFDKNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 127

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +V  NP+I+ FS +  +++EGCLS P   ADV+R   + +   +   +   + 
Sbjct: 128 EPGQGREVVLCNPEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKKFKMT 187

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +G  A   QHE DHL+G+L+ D +S   R
Sbjct: 188 LEGFEARVFQHEYDHLDGVLYHDRMSPEVR 217


>gi|114047714|ref|YP_738264.1| peptide deformylase [Shewanella sp. MR-7]
 gi|113889156|gb|ABI43207.1| peptide deformylase [Shewanella sp. MR-7]
          Length = 163

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY   DGIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL ++  R  P+V INP+I+  S ++   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSEN--RDQPLVLINPEIVEKSGEYVG-EEGCLSIPGYRAKVSRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163


>gi|113970479|ref|YP_734272.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113885163|gb|ABI39215.1| peptide deformylase [Shewanella sp. MR-4]
          Length = 163

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY   DGIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL ++  R  P+V INP+I+  S ++   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSEN--RDQPLVLINPEIVEKSGEYVG-EEGCLSIPGYRAKVSRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163


>gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34]
          Length = 177

 Score =  117 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L + +RP+ + N  ++  LID+M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+   A  +QHE DHL G+L+   +    R
Sbjct: 121 DMMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDFTR 160


>gi|227824654|ref|ZP_03989486.1| peptide deformylase [Acidaminococcus sp. D21]
 gi|226905153|gb|EEH91071.1| peptide deformylase [Acidaminococcus sp. D21]
          Length = 164

 Score =  117 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V    PILR  +  + + +  +   +  M E MY+ +G GLAA QIG+  R++V
Sbjct: 9   MSLLPIVKVGAPILREKAEAVTRFDKKLEKTLKAMAESMYANNGCGLAAPQIGLSKRMIV 68

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D A  +         +++      +  EGCLS+ DY  +VKR+A +TVR+ D    
Sbjct: 69  IDADDGAGIR----EFVNPVLSEFKGEEIDTEGCLSVDDYEGEVKRAAEVTVRFQDRKGG 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKR 155
           H  + A GLLA  LQHE DHL+GILFID    LS  ++
Sbjct: 125 HWRLTASGLLARALQHECDHLDGILFIDRALSLSPKRK 162


>gi|118581913|ref|YP_903163.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118504623|gb|ABL01106.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 168

 Score =  117 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M   P++ +P P+L+++   +  I+ +I  LI ++L+ M +    +G+AA QIGV  R  
Sbjct: 1   MAIHPILRYPHPLLKKICHEVTGIDREIHALIQDLLDTMRAGPGSVGVAAPQIGVTLRAC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D+ +  + +        +    I      +V +EGC+S+PDY  DV+RS  + V +++
Sbjct: 61  VVDVSNSRNGRENNHGLLRMINPRIIARSGSAVMREGCMSVPDYTGDVERSTELRVSFLE 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              + + I A G  A  LQHE+DHL+GILF+D +  +K  +  +K
Sbjct: 121 PEGELREITASGFEAVALQHEMDHLDGILFLDRIVSVKTGLFRRK 165


>gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514]
 gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514]
          Length = 191

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +  P+LR+    + ++ S+I   I +M E MY + GIGLAA Q+    ++ VI
Sbjct: 1   MSLKVIKYGHPVLRKKGEKVTRVTSEIKQFIKDMFETMYESRGIGLAAQQVARAVQITVI 60

Query: 62  DLQD---------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D++                   +  P+V INP++       +  +  CLS P+  A++ R
Sbjct: 61  DVRGITDRPSTLELNGKPASVEKFMPLVLINPEVKPVGPKVAGTEG-CLSFPEIFAEITR 119

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              + V  M+ N +     A GLLA  +QHE DHLNGILFID +    +  +  ++ +L 
Sbjct: 120 PETVDVVAMNENGERIEFRAGGLLARAVQHETDHLNGILFIDRMDTETKQELKPELEELQ 179


>gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 201

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+  + + ++ RV++P+     D+  L+ +M+  M + +G+GLAA Q+GV  +L V 
Sbjct: 9   SVLPITRWGEDVMHRVNQPVTDFGDDLHKLVADMVATMNAAEGVGLAANQVGVDLQLFVF 68

Query: 62  DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK              +EGCLS+P       R  +  V  +D +
Sbjct: 69  DCPDRDGVRHQGVVCNPKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEH 128

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                   +GLLA CLQHE DH  G++F D LSR  +  +  +  +L 
Sbjct: 129 GNPVSYEGNGLLARCLQHETDHTQGMVFGDRLSRKYKKRLFAEAEELA 176


>gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4]
 gi|254767598|sp|C1B0D9|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4]
          Length = 196

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  + +  +++  LI +M + M + +G+GLAA Q+G+  RL V
Sbjct: 1   MAILPIRIVGDPVLHEPTETVSESPAELSELIADMYDTMDAANGVGLAANQVGIPLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ---------EGCLSIPDYRADVKRSAFIT 111
            D  D      P       +    +     +         EGCLS+P  +    R+ +  
Sbjct: 61  YDCPDVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V   D +     I      A  LQHE+ HL+G L++D L         K + +
Sbjct: 121 VTGTDADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173


>gi|187778895|ref|ZP_02995368.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC
           15579]
 gi|187772520|gb|EDU36322.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC
           15579]
          Length = 147

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M E MYS +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMAETMYSAEGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I  +            EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGEGLIKLINPEIIETEGSQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 QIVLEGEELLARAFCHEIDHLDGVLFVDKV 144


>gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
          Length = 166

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+ D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIKIYEDEILRKRSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A           +            EGCLS+P+   +V+R   + V   D    
Sbjct: 61  IDIGEGAIELVNPQIEYSEGSVVDV------EGCLSVPNVWGEVERPQKVVVNAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 215

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 75/146 (51%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +      +  L++++   MY+  G+GLAA QIGV  R+ V D
Sbjct: 45  VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 104

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A  +R     V  +D   + +
Sbjct: 105 CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 164

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            ++  G  A CLQHE DHL+G L++D
Sbjct: 165 TVHGTGFFARCLQHESDHLDGTLYVD 190


>gi|239978163|ref|ZP_04700687.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 183

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 75/146 (51%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +      +  L++++   MY+  G+GLAA QIGV  R+ V D
Sbjct: 13  VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A  +R     V  +D   + +
Sbjct: 73  CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 132

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            ++  G  A CLQHE DHL+G L++D
Sbjct: 133 TVHGTGFFARCLQHESDHLDGTLYVD 158


>gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L   +R +E+   +++  L+ +M + M + +G GLAA QIGV  ++V
Sbjct: 1   MAVREVLKMGDPRLLAPARAVERFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V +NP +   SD      EGCLS+P  R  V R   I  R 
Sbjct: 61  IFEVNANPRYPDAAEVPLTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRHGEIHYRG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D   +       G  A  +QHE+DHLNGIL+   +  L+
Sbjct: 121 FDAAGRALERRVSGFHARVVQHEVDHLNGILYPMRIPDLR 160


>gi|218132889|ref|ZP_03461693.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991762|gb|EEC57766.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC
           43243]
          Length = 159

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 9/154 (5%)

Query: 1   MVKKPLV---IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + +       D ILR+ ++ + ++   I  LID+M + MY  +G GLAA Q+G+  R
Sbjct: 1   MALRNIRVLGQDGDEILRKTAKEVTEMTPKIRELIDDMFDTMYEANGCGLAAPQVGIRKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +VVID  D      P+V INP I+  S + +  +  CLS+P     V R  +  V+  D 
Sbjct: 61  IVVIDCGDD-----PIVLINPVILETSGEQTGSEG-CLSVPGKCGTVTRPNYAKVKAFDE 114

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +    I+  + LLA CL HE+DHL+GI+++D + 
Sbjct: 115 DMNEYIVEGEELLARCLCHEIDHLDGIMYVDKVE 148


>gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142]
 gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
          Length = 187

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 87/148 (58%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             + +  D +LR+ ++ I K++  +  L   ML+ MYS+ GIGLAA Q+ +  +L+VID 
Sbjct: 17  LDIHVLGDRVLRQPAKRIAKVDDSVRQLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INPKI   S +  V +EGCLSIP    DV R   I V + D   + + 
Sbjct: 77  EPDNPANPPLILINPKITRVSQELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A  LLA  +QHE+DHLNG++F+D + 
Sbjct: 137 IQATDLLARVIQHEMDHLNGVMFVDRVD 164


>gi|300855374|ref|YP_003780358.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300435489|gb|ADK15256.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 156

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ F D +LR+VSR ++ I+ + + ++ ++ + +Y++ G+GL+A QIG+L R++ 
Sbjct: 1   MAVREILKFGDKLLRKVSRKVKNIDEETLGIVQDLKDTLYASSGVGLSAPQIGILKRIIF 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P+V INPKI+         +  CLS   +   V R   + V   D N  
Sbjct: 61  IDLGKENTD--PVVLINPKIVKKMGRNEGPEG-CLSYNGHEGIVVRPKKVIVVGEDINGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A+GL A    HE+DHL+G+L+ D   ++ +
Sbjct: 118 EVRYNAEGLFARAFCHEIDHLDGVLYTDKAKKVYK 152


>gi|297617045|ref|YP_003702204.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144882|gb|ADI01639.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680]
          Length = 153

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 6/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP+LR  + P+   N  ++ L++NM + +Y  +G+GLAA QIGVL R+VV
Sbjct: 1   MAAYQIVVVPDPVLREKALPVTSFNQGLIRLLENMKDSLYEAEGVGLAAPQIGVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D          +  +      +      GCLSIP+ R  VKR+  + V  ++   +
Sbjct: 61  FDAGDGLVELINPRILEEEGEEAGIE------GCLSIPNTRGLVKRAKRVVVEALNRYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  I  +GL+A  +QHE+DHL+GILF D 
Sbjct: 115 NIRIEGEGLVARVIQHEIDHLDGILFTDR 143


>gi|210622388|ref|ZP_03293141.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275]
 gi|210154270|gb|EEA85276.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275]
          Length = 146

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    +P+LR+  +P+ K +  +  L+D+M + MY  DG+GLAA Q+G+L R VV
Sbjct: 1   MALRRVTKMGEPVLRKKCKPVTKFDEKLGQLLDDMADTMYEADGVGLAAPQVGMLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I               EGCLS+ +    V R  F+ V+  D + +
Sbjct: 61  IDIGEGLIELINPEIIETAGE------QTDIEGCLSVDNINEPVTRPYFVKVKAQDRHGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HELDHL+GILF+D + +
Sbjct: 115 EFELAGEELLARAFCHELDHLDGILFVDRIEK 146


>gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 162

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 10  MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 69

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++D       +  +NP+II    +    +  CLS+P++ A+VKR A + V+Y+D N +
Sbjct: 70  VDIRDEDGL---IKLVNPEIIEKDGEQVGVEG-CLSVPNFNANVKRPAHVIVKYLDENGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A+GL A  L HE+DHLNG+LFID
Sbjct: 126 EKKIEAEGLKAVALCHEIDHLNGVLFID 153


>gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411]
 gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
 gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411]
 gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
          Length = 193

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   P+VI  DP+L   +  ++     D+  LI +M E + + +G+GLAA Q+GV  R  
Sbjct: 1   MTIMPIVICGDPVLHNPTTKVDPSEIPDLAPLIADMYETLSAANGVGLAANQVGVNKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITF------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V D  D    +     +   ++          D    +EGCLS+P Y     R+ +  V 
Sbjct: 61  VYDCPDTERGEMRRGCVINPVLETSEIPETMPDEEEDEEGCLSVPGYSFPTGRADWARVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
            +D N +   +   G  A CLQHE+ HL+G L+ID L  R KR   +KK  K
Sbjct: 121 GLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKRK--SKKAVK 170


>gi|152989916|ref|YP_001355638.1| peptide deformylase [Nitratiruptor sp. SB155-2]
 gi|151421777|dbj|BAF69281.1| formylmethionine deformylase [Nitratiruptor sp. SB155-2]
          Length = 176

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 2/151 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PD  L   S+ +E  + ++  L+D+M E M + +GIGLAA+Q+ V  R ++I
Sbjct: 1   MIRQIITYPDKRLFLRSKEVENFDEELQTLLDDMYETMVAKNGIGLAAIQVAVPLRALII 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L D   +++    +     +I       VY EGCLS+PDY  DV+R+ ++ V Y D   
Sbjct: 61  NLPDEEGKQHKEDLLELINPVIVEKKGTQVYTEGCLSVPDYYDDVERAEWVKVEYQDRYG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             + +  DGLLA  +QHE+DHL+G LFI+ L
Sbjct: 121 NKKTLETDGLLAVAVQHEMDHLDGHLFIEKL 151


>gi|307244489|ref|ZP_07526598.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492182|gb|EFM64226.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678]
          Length = 151

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +P+L + S+ +   N  +  L+D+M + MY  DG+GLAA Q+GVL R VV
Sbjct: 1   MAIRNILKMGEPLLNKKSKQVVDFNDRLHTLLDDMADTMYKEDGVGLAAPQVGVLRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +        V +               EGCLS+ DY  +V R  ++ V+  D   +
Sbjct: 61  VDIGEGLIELINPVIVETSGE------QTDLEGCLSVVDYIGEVTRPNYVKVKAQDRFGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +  +G LA    HE+DHL GILF++ +   ++
Sbjct: 115 DIEVEGEGFLARAFCHEIDHLEGILFVERVEDTEK 149


>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
          Length = 997

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 86/167 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 795 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 854

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP +   S    VY+E CLS P   A+V R   + +   D       
Sbjct: 855 AGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 914

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +   GL A   QHE DHL GILF D +S    + + + +  L +  +
Sbjct: 915 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 961


>gi|300087750|ref|YP_003758272.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527483|gb|ADJ25951.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 174

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR  S+ I  ++  I  L+D+M+E M + +G GLAA Q+GV  R +V
Sbjct: 1   MPVRKIRIHPDPVLRIKSKKIPVVDRSIRELVDDMVETMQTNNGCGLAAPQVGVSLRCIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I + +               I       V +E CLSIP   A+V RS  + V+ +  + +
Sbjct: 61  IGMPEQDPFTIINPE-----IVKRRGERVIEEACLSIPGVGAEVTRSLEVIVKGIGRDGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I    LLA  L+HE+DHLNG+LFID +         +K+ K+ Q+ D
Sbjct: 116 PLRIKGHDLLAQALEHEIDHLNGLLFIDRVDS------QEKLYKITQISD 159


>gi|288940537|ref|YP_003442777.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288895909|gb|ADC61745.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 166

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L++VS P++  +  + + I ++ E        +G+AA Q+    R+V
Sbjct: 1   MAILDILKLPDQRLKQVSEPVDSFDQSLRDFIADLEETRLAGPGAVGIAAPQVAHFRRIV 60

Query: 60  VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++DL       N    +     IT  + F++ +EGCLS+PDY  +V R+  I ++  D +
Sbjct: 61  ILDLSSRPKTPNHGHLVLINPEITHWEGFAMGREGCLSVPDYTGNVIRATQIRLKAQDAD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                   +G  A  +QHELDHL+G+LF+D +   + D+  +K+ K
Sbjct: 121 GVEHQYEMEGFEARAVQHELDHLDGLLFVDRVVSRRTDLYRRKVYK 166


>gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70]
 gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s]
 gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2]
 gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150]
 gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023]
          Length = 181

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PIL +V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 1   MIRDLEYYDSPILHKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 61  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173


>gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
 gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
          Length = 207

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  +P+L + + P+E+    + ++  LI +M E M    G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60

Query: 58  LVVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                      NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                R+ +  V   D +     +   G  A CLQHE  HL+G ++ D L    +    K
Sbjct: 121 GFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180

Query: 161 KMSK 164
            + +
Sbjct: 181 AIKR 184


>gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16]
 gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16]
          Length = 157

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P P+L +    +   +  +  L+D+M E M + DG+GLAA Q+G+  ++ V
Sbjct: 1   MSVLPIVTYPAPVLEQPCARVTVFDRQLGRLLDDMYETMIAADGVGLAAPQVGIAKQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R    + +   +I  +    +  EGCLS P    +V R+ ++ VR  +   +
Sbjct: 61  VDIGDEHGR----IELINPVIIEARGEQIDVEGCLSFPGLFGEVPRANYVKVRAQNRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  LQHE+DHL+G+LF   +
Sbjct: 117 LFTLSATGFLARALQHEIDHLHGVLFTSKV 146


>gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
 gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
          Length = 177

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LID+M E M +  G+GLAA QIGV  +LV+
Sbjct: 1   MIHTILKMGDPRLLRVAAPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      +  NP I   SD+     EGCLS+P  R  V R   I     
Sbjct: 61  FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYRRIRYSGR 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   Q     ADG  A  +QHE DHL G L+   +    +
Sbjct: 121 DPYGQLIEREADGFHARVVQHECDHLIGRLYPSRIQDFSK 160


>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
 gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
          Length = 176

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +PILR+ + P+       +    LID+M E MY   GIGLAA Q+G   +
Sbjct: 1   MAILAISKLGNPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQ 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           LVV+D           V INP I  +  +     EGCLS+   R  V R + + V  +D 
Sbjct: 61  LVVMDCPGEGGFP-KTVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPSTVRVTGLDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           NA+     A GL A C+QHELDHL G LFID ++         +  K  Q
Sbjct: 120 NAKPFDFEASGLYAVCIQHELDHLIGKLFIDRMTDFSTLTQMDEFQKYWQ 169


>gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
 gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
          Length = 170

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +   I  DP+LR+ ++P+    + +  +I+     MY  DG+GLAA Q+G+  R   
Sbjct: 1   MTVR---ILGDPVLRKKAQPVTDF-AQVRAIIEEFKLTMYEQDGVGLAAPQVGISLRFFG 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D           + +NP+II  S++  + +EGCLS+P   ADV R  +I VRY D +  
Sbjct: 57  MDDGSGFK-----MIVNPEIIEKSEEKELGEEGCLSVPGVFADVLRHKWIRVRYQDEHGT 111

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     +G  A   QHE DHL+G+LFIDHL    R  + +++ K+++ 
Sbjct: 112 YHEELLEGYPARIFQHEYDHLDGVLFIDHLDSKTRTALAQQLKKIMEE 159


>gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
          Length = 171

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            K  ++   +P+L+  ++P+  I   I  L+D+M E MY  +G+GLAA QI    RL+V+
Sbjct: 19  AKLNIIKAGNPVLKAAAKPVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLRLIVL 78

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +  INP+I+  S +     EGCLS+P Y   V R + I V+ ++   + 
Sbjct: 79  -----DDGNGLIELINPEILETSTEMEEDTEGCLSVPGYYGIVSRYSKIKVKALNRRGKT 133

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                +  LA   QHE+DHLNGILFI+    +++
Sbjct: 134 VYYEPEHFLARIFQHEIDHLNGILFIEKAKNIRK 167


>gi|237817222|ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|297249721|ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|237788035|gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|297173590|gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326410617|gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28]
 gi|326553909|gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 214

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 51  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 111 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214


>gi|24374073|ref|NP_718116.1| peptide deformylase [Shewanella oneidensis MR-1]
 gi|32363156|sp|Q8EE60|DEF3_SHEON RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 163

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY   DGIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  P+V +NP+I+  S ++   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSE--TRDQPLVLVNPEIVEKSGEYVG-EEGCLSIPGYRAKVTRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163


>gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229487487|sp|B2A2K1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 156

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +    DP+L+R ++ +  I+  +  L+ NML+ MY  +GIGLAA QIG+  R++V
Sbjct: 1   MAIKKIRTNDDPVLKRKAKKVTNIDDRLERLLTNMLDTMYEAEGIGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          INP+I+  SD+     EGCLS P  +  V R   +TV+ ++   +
Sbjct: 61  VDIGED----EIYQLINPEIVDTSDEQEKALEGCLSYPGLQGRVTRPVKVTVKALNPQEE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             II A+GLLA  LQHE+DHL+GI FID    + R+
Sbjct: 117 EMIIEAEGLLARALQHEIDHLDGITFIDRAEEVFRE 152


>gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987]
 gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L]
 gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W]
 gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187]
 gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1]
 gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
 gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
 gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
 gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
 gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3]
 gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293]
 gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055]
 gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus anthracis CI]
 gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
 gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L]
 gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W]
 gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187]
 gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1]
 gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293]
 gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3]
 gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
 gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
 gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
 gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
 gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
 gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 156

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396561|sp|Q8XZJ6|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2)
           protein [Ralstonia solanacearum GMI1000]
          Length = 177

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      V INP I   SD      EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL GIL+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTR 160


>gi|254409726|ref|ZP_05023507.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
 gi|196183723|gb|EDX78706.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
          Length = 190

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 87/148 (58%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ + K++  I  L   ML+ MYS DGIGLAA Q+GV  +++VID 
Sbjct: 19  LEIHYLGDRVLRQPAKRVAKVDQSIRQLAHQMLQTMYSADGIGLAAPQVGVNKQIIVIDC 78

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INP I  F       QEGCLS+P    DVKR   + V Y D N + Q 
Sbjct: 79  EPDNPENPPLILINPTIKRFGQSICDAQEGCLSVPGVYLDVKRPVEVEVAYKDENGRPQR 138

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + ADGLL+  +QHE+DHL G++F+D + 
Sbjct: 139 LKADGLLSRAIQHEMDHLTGVMFVDRVE 166


>gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
 gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
          Length = 201

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +       LR  ++ I K++ DI  L   ML+ MYS  GIGLAA Q+G+   L+VID+
Sbjct: 31  LEIYKLGSKALRTTAKRISKVDIDIRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDI 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + 
Sbjct: 91  NFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITK--KMS 163
           + ADGLLA C+QHE+DHL G+LF+D ++    LK+++I +  KM 
Sbjct: 151 MNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYKMK 195


>gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C]
 gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C]
          Length = 182

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 72/150 (48%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L      +     ++  LI++M   MY+  G+GLAA QIG   R+ V 
Sbjct: 12  SVRPMTLLGEPVLHSPCAEVTDFGPELDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVY 71

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +   
Sbjct: 72  DCPDDEDVRHVGHVVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVVEGVTSDGAP 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +   G  A CLQHE DHL+G ++ D ++
Sbjct: 132 VRVEGTGFFARCLQHECDHLDGTVYADRVT 161


>gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
 gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
          Length = 156

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVRHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
           20 Structures
          Length = 147

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 96/150 (64%), Gaps = 3/150 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   AVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             + ADGLLA C+QHE+DHL G LF+D+LS
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLS 147


>gi|289422300|ref|ZP_06424150.1| peptide deformylase [Peptostreptococcus anaerobius 653-L]
 gi|289157245|gb|EFD05860.1| peptide deformylase [Peptostreptococcus anaerobius 653-L]
          Length = 149

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DP+L + ++ +   N  +  L+D+M + MY+ DG+GLAA Q+G+L R VV
Sbjct: 1   MAIRNVVKMGDPVLNKKAKKVVDFNEKLHTLLDDMADTMYNEDGVGLAAPQVGILRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+         +  INP+II    + +  +  CLS+ DY A+V R  ++ V+  D N +
Sbjct: 61  VDI-----GTGLIELINPQIIAQEGEQTDVEG-CLSVVDYVAEVTRPNYVKVKAQDRNGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  +GL+A    HELDHL GILF++ + +
Sbjct: 115 DFEIEGEGLMARAFCHELDHLEGILFVERVEK 146


>gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1]
 gi|238692904|sp|B1ZMD5|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1]
          Length = 192

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 88/183 (48%), Gaps = 16/183 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG------- 53
           M  + +V + DP+LRR    I   +  +  L   ML  M    GIGLAA QIG       
Sbjct: 1   MSLR-IVHYNDPVLRRKGEKITAFDKALSQLAKEMLATMQEAAGIGLAAQQIGRPVQLCV 59

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--------QEGCLSIPDYRADVK 105
           V  R   ID         P + +   +I  + + +          +EGCLS P  R DV 
Sbjct: 60  VDLRRAEIDFTWELDGAKPPLDLIMPMIITNPEITPDRETDVYLVEEGCLSFPKIRGDVP 119

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R   ITVRY D +     ++ DGLLA C+QHE+DHLNG+LFID + +  R  I   +  L
Sbjct: 120 RPDAITVRYQDEHGTPHTLHCDGLLARCIQHEVDHLNGVLFIDRMEKKTRAAIDADVKTL 179

Query: 166 VQL 168
            ++
Sbjct: 180 AKI 182


>gi|212709522|ref|ZP_03317650.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM
           30120]
 gi|212687860|gb|EEB47388.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM
           30120]
          Length = 168

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  L+D+++E MY + +GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIQCSPVTDF-AAVQTLVDDLIETMYSTDNGIGLAATQIAETKAIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +  +   PMVFINP+II    + S  +  CLS+PD  ADV R   + V+  D + 
Sbjct: 60  VIDISEERNE--PMVFINPEIIESEGETSYQEG-CLSVPDVYADVPRFLRVKVKAFDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              ++ +D  LA  +QHE+DHLNG +FIDHLS LKR+M
Sbjct: 117 NEFVVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154


>gi|167772294|ref|ZP_02444347.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM
           17241]
 gi|167665397|gb|EDS09527.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM
           17241]
          Length = 155

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  LR+ SRP+   N  +  L+D+M E M    G+G+AA Q+GVL R VV
Sbjct: 1   MALRNILKEGDERLRKKSRPVTDFNERLWTLLDDMYETMK-DGGVGIAAPQVGVLRRAVV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  H           +I          EGCLSIP     V R A + ++  D   +
Sbjct: 60  IDVGEGKHELV------NPVIVEQSGDQCGGEGCLSIPGQYGLVHRPAQLRLKAQDRYGK 113

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+G  A  + HE+DHL+GILFID   R+
Sbjct: 114 PFELEAEGYFAVAVCHEVDHLDGILFIDKAERM 146


>gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis]
          Length = 290

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 86/167 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PD  LR  ++PI   +  +  L D M ++MY TDG+GL+A Q+GV  +L+V + 
Sbjct: 109 LKIVKYPDSRLRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNP 168

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              + +   ++ +NP+I  +S    V+ EGCLS P+  ADV+R   + +   D   +  I
Sbjct: 169 AGESGKGEEVILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFI 228

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +      A   QHE DHL  ILF + +     + I   +  L Q  +
Sbjct: 229 LSLKEFNARIFQHEYDHLQRILFFERMHPDILETIRPALQDLEQKYE 275


>gi|294055692|ref|YP_003549350.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221]
 gi|293615025|gb|ADE55180.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------- 53
           ++  +  + +PILR V  P+ + N ++  L ++M+E MY+ +GIGLAA QI         
Sbjct: 1   MRLRVTKYGEPILREVGAPVTEFNPELKQLAEDMIETMYAEEGIGLAAQQIDKALQICVV 60

Query: 54  ---------VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
                    V Y       Q       PM  INPK+    D   VY+EGCLS PD R  V
Sbjct: 61  DVRPPEGAEVPYNYSFDGRQPPLDLIMPMAIINPKVTIIDDTEDVYEEGCLSFPDVRGRV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            R   +   + D      II ADGLL  C+ HE+DHLNG LFID + +        ++ K
Sbjct: 121 HRPIGVRCEFQDTEGNPHIIEADGLLGRCILHEVDHLNGELFIDLMEKRDLRKNETRIKK 180

Query: 165 LVQ 167
           L +
Sbjct: 181 LKR 183


>gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803]
 gi|158512448|sp|A0M3P3|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803]
          Length = 196

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+L++ ++ I+K    +  LI+NM + MY+  G+GLAA Q+G+  R+ +I
Sbjct: 1   MILPIIAYGDPVLKKKAKDIDKDYPKLEELINNMWDTMYNAYGVGLAAPQVGLPVRMFMI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                       VFINP+II  + +   + EGCLSIP+ R DV R   
Sbjct: 61  DPAPFADDEELDEAEKKVLMDLRKVFINPQIIEETGEEWAFSEGCLSIPEVREDVFRQPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D N +       GL A  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 ITIEYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDKLSSLKKRLIKSKLANISKGK 180


>gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803]
 gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803]
          Length = 156

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPAILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843]
 gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806]
 gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
          Length = 191

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++  I  L   ML+ MYS++GIGLAA Q+ V  +L+VID 
Sbjct: 17  LELHYLGDRVLRQPAKRIAKVDDSIRQLAREMLQTMYSSNGIGLAAPQVAVNKQLIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INP+II +S +    +EGCLSIPD   DV R   I V Y D   + + 
Sbjct: 77  EHDKPENPPLILINPQIIGYSRELCKAEEGCLSIPDVFLDVIRPQAIEVSYKDEQGKPRK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKK 161
           + A+GLLA  +QHE+DHLNG++F+D + + L  +   KK
Sbjct: 137 LQANGLLARVIQHEMDHLNGVMFVDRVDNDLALNEELKK 175


>gi|117920762|ref|YP_869954.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|117613094|gb|ABK48548.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 163

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY   DGIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  P+V INP+I+  S ++   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSE--TRDQPLVLINPEIVEKSGEYVG-EEGCLSIPGYRAKVTRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163


>gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 163

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L     P+    +D+  L  +ML  MY+  G GLAA QIG+L R+ V
Sbjct: 1   MPVLPILCWPDARLATPCDPVAP-GADLRALAADMLATMYAATGRGLAAPQIGILQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R  P V +NP+I+  S+      EGCLS+P    D+ R A I +R+ D +  
Sbjct: 60  MDTGWKEGRPAPQVLVNPEILWRSEACKTVAEGCLSLPGISPDISRPAEIRLRWRDLDGT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
               +  G  ATC QHE+DHL+GIL +DHL
Sbjct: 120 PHEAHLTGFAATCAQHEIDHLDGILTLDHL 149


>gi|302517742|ref|ZP_07270084.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|318080637|ref|ZP_07987969.1| polypeptide deformylase [Streptomyces sp. SA3_actF]
 gi|302426637|gb|EFK98452.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 183

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 75/159 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL ++  P+L   +R        +  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 13  VRPLSLYGAPVLTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A   R     V     +   +
Sbjct: 73  CPDDEDRRHLGHLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARR 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +   G  A CLQHE DHL G L++D L   +   + ++
Sbjct: 133 RVEGTGFFARCLQHEYDHLEGGLYVDRLDARRHRKVLRE 171


>gi|218904997|ref|YP_002452831.1| peptide deformylase [Bacillus cereus AH820]
 gi|218538969|gb|ACK91367.1| peptide deformylase [Bacillus cereus AH820]
          Length = 156

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  R+ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp. PCC 7120]
 gi|23396565|sp|Q8YVH1|DEF2_ANASP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC 7120]
          Length = 179

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P++   +P LR+ +  +E I ++ I  LID+++  +   +G+G+A+ Q+   YRL ++
Sbjct: 5   LLPIIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIV 64

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             + +    +     P   INPKI+  S +     EGCLS+P  R  V R   I V Y D
Sbjct: 65  ASRPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTD 124

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                Q       +A   QHE DHL+G+LFID +      +  ++  +LV
Sbjct: 125 RYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNTITEEEYQELV 174


>gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
 gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
          Length = 172

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+  DPILR+ ++ I + ++ +  L+ +M E M++ DG GLAA QIG+  RL V
Sbjct: 1   MSLRNIVMLGDPILRQKAKRIHRFDASLRKLVKDMFETMHANDGAGLAAPQIGLSLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCNA 119
           ++L+D    K+  V +    I  ++      +GCLSIP Y   +V+R+  + V+  D N 
Sbjct: 61  VELEDPETEKHYKVAMANPEIIKTEGEQTGLDGCLSIPGYYGVNVRRANKVIVKGQDLNG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   + A+G  A  LQHE+DHLNG+LFID L  
Sbjct: 121 KPMKVMAEGYYAWALQHEIDHLNGVLFIDLLDS 153


>gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
 gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
          Length = 196

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +  P LR  S P+ +INS++   I  M E+MY+  GIGLA+ Q+ +  +  ++
Sbjct: 1   MALEIVKYGHPALRHKSTPVTEINSELRKAIAEMFELMYAAKGIGLASNQVAIPRQFFIL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +L   A  K+  V     +I         +EGCLS P     VKR+  + +   D +   
Sbjct: 61  NLTGDAAEKDEEVVFINPVILNRKSSCEGEEGCLSFPGLYGPVKRAGEVLIEAFDLDGNC 120

Query: 122 QII----YADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +      D L    +QHE DHL+G+LFID ++   R 
Sbjct: 121 FEMTLSAKEDDLAVRAVQHESDHLDGMLFIDRMTDRARK 159


>gi|28210907|ref|NP_781851.1| peptide deformylase [Clostridium tetani E88]
 gi|39930881|sp|Q895Q2|DEF_CLOTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium tetani E88]
          Length = 150

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D +LR+ SR +EKI+  I  L+D+ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNLRFLGDELLRKKSRRVEKIDDRIQALLDDMLDTMYENNGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II     +   +  CLS+P  + +V+R   + V+  + + +
Sbjct: 61  IDIGEG-----PLFLINPEIIEQEGSYIEQEG-CLSVPGRQGEVERPYRVKVKAQNRDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             I+  +  LA  L HE+DHLNG+LF+D +  +K
Sbjct: 115 EIIVEGEEFLAKALCHEIDHLNGVLFVDKIIDVK 148


>gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
 gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
          Length = 466

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 7/157 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V  P+ ILR    P+ K +  +   +D + + MY  DG+G+AA Q+ +  RL V+   
Sbjct: 3   KVVEVPNDILRVTCEPVTKFDKKLRQTVDRLFDTMYEYDGVGVAAPQVNLNQRLAVVHTD 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D      P+V INP+II  S      +  CLSIP     V+R   I V+  D   +   I
Sbjct: 63  DETG---PLVLINPEIIETSGREVGLEG-CLSIPGEFGFVERHESIVVKNQDVKGRTHTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL---SRLKRDMI 158
            A G  A  +QHE+DHL+G+LF D L   +  K   I
Sbjct: 119 QASGFFARAIQHEMDHLDGVLFTDKLAVPNPGKDKRI 155


>gi|75911263|ref|YP_325559.1| formylmethionine deformylase [Anabaena variabilis ATCC 29413]
 gi|75704988|gb|ABA24664.1| Formylmethionine deformylase [Anabaena variabilis ATCC 29413]
          Length = 179

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P++   +P LR+ +  +E I ++ I  LID+++  +   +G+G+A+ Q+   YRL ++
Sbjct: 5   LLPIIQLGNPTLRQKAAWVENIHDAAIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIV 64

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             + +    +     P   INPKI+  S +     EGCLS+P  R  V R   I V Y D
Sbjct: 65  ASRPNPRYPHAPVMEPTAMINPKIVGSSTEIVKGWEGCLSVPGIRGLVPRHQAIEVEYKD 124

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                Q       +A   QHE DHL+G+LFID +      +  ++  K+V
Sbjct: 125 RYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNIITEEEYQKIV 174


>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium sp. 'sapolanicus']
 gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium sp. 'sapolanicus']
          Length = 150

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L    DP+LR  ++ ++KI    + LIDNM E MY+ +G+GLAA Q+G+L R+ V
Sbjct: 1   MAVLKLREIGDPVLRSKAKKVDKITPKTIQLIDNMFETMYAEEGVGLAAPQVGILKRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I   +   + +EGCLSIP    +V RS  I V  ++ + +
Sbjct: 61  IDIGEGNK-----IVLINPEIIEENGKMIMEEGCLSIPGRTGEVIRSKEIKVSSLNRDGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I A+G  A  +QHE+DHL+G+LFID +
Sbjct: 116 EIEIIAEGFEARAIQHEIDHLDGVLFIDKM 145


>gi|226226031|ref|YP_002760137.1| peptide deformylase [Gemmatimonas aurantiaca T-27]
 gi|226089222|dbj|BAH37667.1| peptide deformylase [Gemmatimonas aurantiaca T-27]
          Length = 196

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 13/174 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +   P+LR+ ++ +E +  ++  L+DNM + M +  G+GLAA Q+G L RL V
Sbjct: 1   MSLLDIHVLGSPVLRQETQRVESVTPELRRLVDNMFDTMEAAKGVGLAAPQVGRLERLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D        + +    I   +     +EGCLSIP+  ADV R A + VR  D +  
Sbjct: 61  VDADD------VRLVVINPEIILREGLERGEEGCLSIPEVYADVDRPARVIVRAQDIDLN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-------KMSKLVQ 167
              + A  LL  CLQHE+DHL G LF D LS LK+    K       K  KL++
Sbjct: 115 WYEVDAANLLGRCLQHEIDHLFGKLFTDRLSLLKKRSAMKDWDHEKGKYPKLLR 168


>gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 170

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P+LR+ ++P+ +IN+D+    + M+E+M    GIGLAA Q+G   RL VID+  
Sbjct: 3   IVTYPAPVLRQKAKPLTEINADVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVIDVVG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +    N         I      +  +EGCLS P     V R+  I V   + N Q   + 
Sbjct: 63  NNVDDN---VFINPSIMEEAGETSNEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEVV 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + LLA   QHELDHLNG LFID +S   R   ++++ +L Q
Sbjct: 120 LEDLLARAWQHELDHLNGCLFIDRMSPASRLAASQQLKELEQ 161


>gi|281355873|ref|ZP_06242367.1| peptide deformylase [Victivallis vadensis ATCC BAA-548]
 gi|281318753|gb|EFB02773.1| peptide deformylase [Victivallis vadensis ATCC BAA-548]
          Length = 197

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
              DP+L+  +RP+E +  +I  L  NM E +    G+G+AA Q+G   RLVV D+   +
Sbjct: 13  TAGDPVLKAKARPVEAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDIPVDS 72

Query: 68  H------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                         + P+  INP+I+  SD      EGCLS+PD  A V R A +  R  
Sbjct: 73  MGENPTVGEQLLLPRMPLTVINPEIVASSDVLCESDEGCLSVPDIWAPVVRPATVVFRAT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + +       GLL  C+QHELDHL+G+LF+D +S      I + + +L++  +
Sbjct: 133 TLDGEVIECECGGLLGRCIQHELDHLDGVLFVDRVSPEAARTIERDLKQLIRYGE 187


>gi|327398774|ref|YP_004339643.1| peptide deformylase [Hippea maritima DSM 10411]
 gi|327181403|gb|AEA33584.1| Peptide deformylase [Hippea maritima DSM 10411]
          Length = 168

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 89/164 (54%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + ++PD ILR+ ++ +EKI+  I++L++ M E MY  +GIGLAA Q+G+  +LVVIDL+
Sbjct: 2   EVRVYPDGILRKKAKDVEKIDDRIVDLLNQMRETMYKFNGIGLAAEQVGLQEKLVVIDLR 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                +   +     I +        +        Y     R  +I V+Y+D N   QI+
Sbjct: 62  PDGKNQPIELINPVIIASEGIFEEHEEGCLSVPGYYDVVKDRKKWIKVKYLDRNENEQIL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             D  L+  +QHE+DHLNG LFIDHL   +++   K+  K  + 
Sbjct: 122 ETDEFLSVVIQHEIDHLNGKLFIDHLPPTRKEFFKKQWKKRQKE 165


>gi|126174517|ref|YP_001050666.1| peptide deformylase [Shewanella baltica OS155]
 gi|153000548|ref|YP_001366229.1| peptide deformylase [Shewanella baltica OS185]
 gi|160875185|ref|YP_001554501.1| peptide deformylase [Shewanella baltica OS195]
 gi|217973486|ref|YP_002358237.1| peptide deformylase [Shewanella baltica OS223]
 gi|304408620|ref|ZP_07390241.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305448|ref|ZP_07585196.1| peptide deformylase [Shewanella baltica BA175]
 gi|125997722|gb|ABN61797.1| peptide deformylase [Shewanella baltica OS155]
 gi|151365166|gb|ABS08166.1| peptide deformylase [Shewanella baltica OS185]
 gi|160860707|gb|ABX49241.1| peptide deformylase [Shewanella baltica OS195]
 gi|217498621|gb|ACK46814.1| peptide deformylase [Shewanella baltica OS223]
 gi|304352441|gb|EFM16838.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911751|gb|EFN42176.1| peptide deformylase [Shewanella baltica BA175]
 gi|315267381|gb|ADT94234.1| peptide deformylase [Shewanella baltica OS678]
          Length = 163

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   +   ID+++E MY   DGIGLAA Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   R  P V INP+I+  S +F   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSD--GRDQPQVLINPEIVEKSGEFVG-EEGCLSIPGYRAKVSRFEKVKVTALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163


>gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 207

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  + +L   ++P+E+      ++  LI +M E M + +G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGETVLHEPTQPVEESEISTPEMQQLIADMYETMDAANGVGLAANQVGIGKR 60

Query: 58  LVVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                      NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                R+ +  V   D N     +   G  A CLQHE  HL+G L+ D L    +    K
Sbjct: 121 GFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKRQAKK 180

Query: 161 KMSK 164
            + +
Sbjct: 181 AIKR 184


>gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne]
 gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
           str. A2012]
 gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
 gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B]
 gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum]
 gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94]
 gi|39931068|sp|Q81WH1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
 gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248]
          Length = 156

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+GLLA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGLLARAIQHEIDHLHGVLFTSKVTR 148


>gi|302671348|ref|YP_003831308.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
 gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
          Length = 163

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  + +++I   I  L+++MLE MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MALRTIREIGDDVLVKNCKEVKEITPRIKELVEDMLETMYEANGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+       +PMVFINP+I+  S + + Y+  CLS+P     V R+ ++  +  D +  
Sbjct: 61  IDVTGE----DPMVFINPEILETSGEQTGYEG-CLSVPGKSGIVTRANYVKAKATDLDGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             II  + LLA  +QHE DHLNG +++D + 
Sbjct: 116 EFIIEGEELLARAIQHENDHLNGKMYVDKVE 146


>gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110]
 gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110]
          Length = 187

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 87/148 (58%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             + +  D  LR+ ++ I K++  I  L   ML+ MYS+ GIGLAA Q+ +  +L+VID 
Sbjct: 17  LDIHVLGDRALRQPAKRITKVDDSIRKLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P++ INPKI   S++  V +EGCLSIP    DV R   I V + D   + + 
Sbjct: 77  EPDNPENPPLILINPKITRVSEELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A  LLA  +QHE+DHLNG++F+D + 
Sbjct: 137 IQATDLLARVIQHEMDHLNGVMFVDRVE 164


>gi|260167211|ref|ZP_05754022.1| peptide deformylase [Brucella sp. F5/99]
 gi|261756615|ref|ZP_06000324.1| peptide deformylase-like protein [Brucella sp. F5/99]
 gi|261736599|gb|EEY24595.1| peptide deformylase-like protein [Brucella sp. F5/99]
          Length = 164

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A  K    +INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAAGSKI---YINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|157375143|ref|YP_001473743.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157317517|gb|ABV36615.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 163

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   +   ID++L+ MY   DGIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-ESVQGFIDDLLDTMYDTEDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     R  P V INP+II    DF   +EGCLSIP YRA V RS  + ++ +D   
Sbjct: 60  VIDLSPE--RDQPQVLINPEIIEAEGDFVG-EEGCLSIPGYRAKVTRSEKVKIKALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  D  LA  +QHE++HL G++F DHLS+LK+ +  KK+SK  
Sbjct: 117 TPFEIETDTFLAIVIQHEMEHLQGVVFTDHLSKLKQQIALKKVSKYK 163


>gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
 gi|123773734|sp|Q46HV9|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
          Length = 202

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 6/167 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D  LR  +  I K++  I  L  +ML  MYS+ GIGLAA Q+G+  RL+VIDL
Sbjct: 31  LKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       PMVFINP+II+ S     Y+EGCLSIP    +V R + I + Y D   + + 
Sbjct: 91  KFEDPNSPPMVFINPEIISSSATLDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           + ADGL+A C+QHE+DHLNG+ F+D ++        +++ K +   +
Sbjct: 151 MNADGLMARCIQHEIDHLNGVCFVDKVTD------EEELKKQLNENN 191


>gi|160947099|ref|ZP_02094266.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270]
 gi|158446233|gb|EDP23228.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270]
          Length = 164

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/148 (45%), Positives = 92/148 (62%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR+ +R +E I+  I NL+++M E MY++DG+GLA  QIG+L RLV 
Sbjct: 1   MALRNIRIDDDPVLRKKARKVEVIDDKIKNLLEDMAETMYNSDGVGLACPQIGILKRLVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          INP+I+  S +    +  CLSIPD R  VKR   +  +Y D +  
Sbjct: 61  IDVGDEHGLL---KMINPEILESSGEQVGPEG-CLSIPDVRGFVKRPEKVKFKYTDVDEN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            QII A GLLA C+ HE+DHLNGILF D
Sbjct: 117 EQIIDATGLLAVCICHEIDHLNGILFTD 144


>gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 156

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ +
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
           12885]
 gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
           12885]
          Length = 550

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 6/151 (3%)

Query: 4   KPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            P+V    +P+LR  ++P+ K+N ++  L+D M   MY+ DGIGLAA Q+GV  R+VV+D
Sbjct: 23  LPIVKGADEPVLRTPAQPVAKVNREVRQLLDRMAATMYAADGIGLAAPQVGVSKRIVVVD 82

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + D       +  INP+I+   ++     EGCLS+P   A+V+R A + V  +D + +  
Sbjct: 83  VGDG-----LIELINPEIVRRGEETETAYEGCLSLPRLLAEVERPATVQVTALDRHGRRI 137

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I  +GLLA CLQHE+DHL+G+L  D   ++
Sbjct: 138 WIEGEGLLARCLQHEIDHLDGVLITDRARKV 168


>gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D]
          Length = 177

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV++P+E+    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      V INP I   S+D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL G+L+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTR 160


>gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102]
 gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102]
          Length = 190

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M +  P++   +P LR+ +  +E I +  I  LI++++  +   +G+G+AA Q+   YRL
Sbjct: 15  MTELAPIIQLGNPTLRQKAVWVENIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYRL 74

Query: 59  VVID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++         +A    P   INPKII  S +     EGCLS+P  R  V R   I V 
Sbjct: 75  FIVASRPNARYPNAPEMEPTAMINPKIIAHSTEVVKDWEGCLSVPGIRGLVPRYKSIEVE 134

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           Y DC    Q       +A   QHE DHL+GI+F+D L     DMIT++
Sbjct: 135 YTDCQGNLQKQELTDFIARIFQHEYDHLDGIVFVDRLES-TLDMITEQ 181


>gi|239977965|ref|ZP_04700489.1| polypetide deformylase [Streptomyces albus J1074]
 gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074]
 gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074]
          Length = 206

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + + +  + IL R  R + +     + +  L+D+M     + +G GLAA Q+GV  RL
Sbjct: 20  AVRRITVVGEEILHRPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVGVDLRL 79

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYM 115
            V D+ D    ++     NP +              EGCLS+P     V R     VR  
Sbjct: 80  FVWDITDDWGVRHVGHLANPVLDDVPATDRRLVEEPEGCLSVPGPYRVVPRLDRAVVRGR 139

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D + +  +I   G  A CLQHE DHL G L++D L+R +R    ++M 
Sbjct: 140 DKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLARRERKSALQEMR 187


>gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 181

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 4/151 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +V +P  IL      + + +  ++ L+++M + M   DG+GLAA QIG+  R+ V+
Sbjct: 22  AVRKIVTYPAEILEEPCETVTEFDKKLVKLLNDMYDTMIEFDGVGLAAPQIGIRKRIAVV 81

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ D       +  INP+II    + +  +  CLS P    +V R   + ++  D   + 
Sbjct: 82  DIDDENGT---IELINPEIIETGGEQTGPEG-CLSFPGLYGEVTRPFTVKIKAQDRKGKS 137

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + AD  LA  +QHE+DHL+G+LF   ++R
Sbjct: 138 FTLEADDFLARAIQHEIDHLDGVLFTSKVNR 168


>gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708]
 gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708]
          Length = 187

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/143 (40%), Positives = 86/143 (60%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ + KI+ ++  L+  ML+ MYS DGIGLAA Q+G+  +L+VID +    
Sbjct: 22  LGDRVLRQPAKRVTKIDDELRQLVREMLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +V INP I   S +  V +EGCLSIP    DVKR   + + Y D   + + + A  
Sbjct: 82  EAPALVLINPVIKQVSSELCVAEEGCLSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGD 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LL  C+ HE+DHLNG+LF+D + 
Sbjct: 142 LLGRCILHEMDHLNGVLFVDRVE 164


>gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 177

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R+++P++  +  ++  L+ +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIHEILKMGDPRLLRIAKPVDHFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGHNERYPDAPSVPETVLINPTITPVSLDTEEGWEGCLSVPGLRGAVSRLSMIRYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQFGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAK 160


>gi|154175184|ref|YP_001407439.1| peptide deformylase [Campylobacter curvus 525.92]
 gi|112803277|gb|EAU00621.1| peptide deformylase [Campylobacter curvus 525.92]
          Length = 174

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 2/159 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L  VS+ +E  + ++  L+D+M E M + DGIGLAA+Q+GV  R+ ++
Sbjct: 1   MVLEILSYPNKKLYEVSKEVETFDEELHKLLDDMYETMIAKDGIGLAAIQVGVAKRIFIV 60

Query: 62  DLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    I              VYQEGCLS+P +  DVKR+  + +++ D   
Sbjct: 61  NLSNEEGVQDKADLIEIINPEFELKVGECVYQEGCLSVPGFYEDVKRAERVKIKFQDRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           Q + I  DGLLA  LQHE DHL+G LFI+ +   KR   
Sbjct: 121 QERQIETDGLLAVALQHENDHLDGHLFIEKIGYNKRKKF 159


>gi|239835143|ref|ZP_04683470.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239821282|gb|EEQ92852.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 165

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 4/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PD  LR V+ P+   +S +  L  ++L+ M +  GIG+ A  IG+  RLVV
Sbjct: 1   MTVRPIVSYPDKRLRAVADPVTLFDSALQELGTDLLDTMRAAPGIGITAPHIGIAMRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +          P  ++NP+I+  S++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  L----ELPEAGPKFYVNPQILWASEEKIHHQEGSVSMPGVVDEVERHARIKIRYQDLDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q   ++GLLA C QHE+D L+GI +I  LSRL+RD + K+  K  + R
Sbjct: 117 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLVKRYEKSQRQR 165


>gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215]
 gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 201

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 5/165 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +       LR  ++ I K++ D   L   ML+ MYS  GIGLAA Q+G+   L+VID+
Sbjct: 31  LEIYKLGSKTLRTTAKRISKVDIDTRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDI 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + 
Sbjct: 91  NFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITK--KMS 163
           + ADGLLA C+QHE+DHL G+LF+D ++    LK+++I +  KM 
Sbjct: 151 MNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYKMK 195


>gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 155

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ S+ + ++   I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQEGDPLLRKKSKVVPEVTDRIKVLLDDMAETMYQADGVGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D          +NP+II    +    +  CLSIP++ A VKR   + V+Y+D +  
Sbjct: 61  VDPHDETTGLVK--LVNPEIIEADGEQVGVEG-CLSIPNFNATVKRPEHVKVKYIDEDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHL+GILF D 
Sbjct: 118 EKIWDAHGFPAVILSHEIDHLDGILFRDK 146


>gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N]
 gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N]
          Length = 177

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+  S ++  LID+M + M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHSILKMGDPRLLRVAAPVERFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V  NP I   SD+     EGCLS+P  R  V R  +I  +  
Sbjct: 61  FGFERNPRYPDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYQYIRYQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +       A G  A  +QHE DHL G L+   +    +
Sbjct: 121 APDGTAIDREASGFHARVVQHECDHLIGRLYPSRIQDFSK 160


>gi|120599034|ref|YP_963608.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|146292895|ref|YP_001183319.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|120559127|gb|ABM25054.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|145564585|gb|ABP75520.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|319426575|gb|ADV54649.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 163

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   +   ID+++E MY   DGIGLAA Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   R  P+V INP+I+  S +F   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSD--GRDQPLVLINPEIVEKSGEFVG-EEGCLSIPGYRAKVSRFEKVKVTALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163


>gi|86741351|ref|YP_481751.1| peptide deformylase [Frankia sp. CcI3]
 gi|86568213|gb|ABD12022.1| peptide deformylase [Frankia sp. CcI3]
          Length = 230

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 40/204 (19%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+    DP+LR  +  + + ++ +  L+ +M++ MY   G+GLAA QIGV  RL V
Sbjct: 1   MTVLPIRTVGDPVLRTPTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFV 60

Query: 61  IDLQDHAHRKNPMVFI----------------------------------------NPKI 80
            D+      ++                                             + + 
Sbjct: 61  FDVDYDPRDESVPRVPRVVVNPVLELGPDPGRPGETQRPGGIQRSGETQRSGETQRSGET 120

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
               +      EGCLS+P       R+    VR +D   Q      +GLLA C QHE+DH
Sbjct: 121 QRSGETQQHGPEGCLSVPGLHFPTTRALAARVRGVDVTGQPVEYAGEGLLARCFQHEVDH 180

Query: 141 LNGILFIDHLSRLKRDMITKKMSK 164
           L+GIL++D L+   R    + + +
Sbjct: 181 LDGILYVDRLTGEARRAAVQALRE 204


>gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 177

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV++P+E+    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL G+L+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTR 160


>gi|311029970|ref|ZP_07708060.1| peptide deformylase [Bacillus sp. m3-13]
          Length = 159

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P P+L +    +   +  ++ L+ NM + M   DG+GLAA QIG+  R+ +
Sbjct: 1   MTILDIVKYPAPVLEQNCEAVTVFDKRLIRLLSNMYDTMLEADGVGLAAPQIGIAKRIAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP+I+    +    +  CLS PD   +VKR+ ++ VR  +   +
Sbjct: 61  VDIDDKHG---KIELINPEIVDEEGEQVGPEG-CLSFPDLYGEVKRADYVKVRAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  +QHE+DHLNG+LF   +
Sbjct: 117 WYELEARGFLARAIQHEIDHLNGVLFTSKV 146


>gi|325104375|ref|YP_004274029.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324973223|gb|ADY52207.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 194

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 15/183 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++ +   IL++    IEK   ++  LI +M E M + +G GLA+ QIG+  RL ++
Sbjct: 1   MKRSILAYGHHILKQKCNYIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60

Query: 62  ---------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
                                 +     FIN KII  S++    +EGCLSIP+    VKR
Sbjct: 61  DSKSTFDNLGEEDRKFYFPQDDKGIMETFINAKIIQRSEELWDDEEGCLSIPNLFYKVKR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +  IT+ Y + N + QI    G  A  +QHE DH  G+L++D+L  L + ++  K+ K++
Sbjct: 121 NWAITIEYYNRNFEKQIRTFSGTTARMIQHEYDHTEGVLYLDYLKPLTKRLMASKLQKIL 180

Query: 167 QLR 169
           + +
Sbjct: 181 KGQ 183


>gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg]
 gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg]
 gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss]
 gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14]
 gi|13878461|sp|Q9PK41|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg]
          Length = 181

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+V+ PI++I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 1   MIRDLEYYDSPILRKVAAPIDEITDELRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 61  GVEKELDDGELIFCDFPKVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 121 NLDGQPFSMTLEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173


>gi|289578510|ref|YP_003477137.1| peptide deformylase [Thermoanaerobacter italicus Ab9]
 gi|289528223|gb|ADD02575.1| peptide deformylase [Thermoanaerobacter italicus Ab9]
          Length = 159

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS ++ ++D+M++ MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +         V  EGCLSIP    +VKR   + VRY+D   +
Sbjct: 61  IDIGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVRYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|238916653|ref|YP_002930170.1| hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750]
 gi|238872013|gb|ACR71723.1| Hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750]
          Length = 171

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR  ++ I ++   I  LID+M + MY  +G+GLAA Q+G+  RLVV
Sbjct: 15  MAIRNIRTLGDDILRAKAKEITEMTPRIEELIDDMFDTMYEANGVGLAAPQVGIRKRLVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D      P+V INP ++  S   +  +  CLS+P    +V R  +  V+ ++ N +
Sbjct: 75  IDCGDD-----PIVLINPVVLETSGSQTGLEG-CLSVPGKTGEVTRPNYAKVKALNENME 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+  + LLA CL HE+DHL+GI+++D + 
Sbjct: 129 EIIVEGEELLARCLLHEIDHLDGIMYVDKVE 159


>gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 163

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ +   N  +  LID+M E M    G+GLAA QIG+L R++V
Sbjct: 1   MAIRKIRTDGDPILRKKSKVVTNYNDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIV 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +D      D   +      INP+II    +    +  CLS+P  +  VKR+  I V+Y D
Sbjct: 61  VDNREEDNDEGEKPMRFYMINPEIIEKDGEEVSMEG-CLSVPGKQGTVKRAKHIKVKYND 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              Q +++ A+  LA  +QHE DHL+GIL+ D 
Sbjct: 120 LEGQEKLMEAEDFLARIIQHETDHLDGILYTDK 152


>gi|319793878|ref|YP_004155518.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315596341|gb|ADU37407.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 179

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+   +  ++  L+ +M E M++ +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMHAVNGAGLAAPQIGVDQQLV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I    +D     EGCLS+P  R  V R A I   
Sbjct: 61  IFGTDIVNPRYPDAPPVPRTVLLNPVITPIGEDEEEGWEGCLSVPGLRGVVPRFANIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D         A G  A  +QHE+DHL G L+   +    R
Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSR 162


>gi|293977820|ref|YP_003543250.1| peptide deformylase [Candidatus Sulcia muelleri DMIN]
 gi|292667751|gb|ADE35386.1| peptide deformylase [Candidatus Sulcia muelleri DMIN]
          Length = 189

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++I+ +  LR+    I+K   DI  LI+NM + MY   GIGL+A QIG+  RL +I
Sbjct: 1   MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  +   +K   VFINP II       + +EGCLSIP+   ++KR   I + Y D N + 
Sbjct: 61  EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168
              + +G L+  +QHE DH+ G LFID++  LK  +I K         K+ KL +L
Sbjct: 121 YKQHFNGFLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176


>gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With
           Inhibitor
 gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With
           Inhibitor
          Length = 188

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
            +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V +  
Sbjct: 10  KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNAL 69

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    +
Sbjct: 70  YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHL 129

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               G+ +   QHE DHLNG LFID ++++ +  +  K+++L++
Sbjct: 130 KILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 173


>gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
 gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
          Length = 190

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 5/172 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ ++  P+LR V++ I     ++  LI  M + MY +DGIGLAA QIG   RL+VID
Sbjct: 1   MLPIYLYGHPVLREVAQDITPEYPNLSGLIAEMWKSMYESDGIGLAAPQIGKSIRLLVID 60

Query: 63  LQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               A             IN +I   S++    +EGCLS+P     V+R   IT+ Y+D 
Sbjct: 61  ASPMAEYFPECKDFKTVMINARITELSEETLSEEEGCLSLPGIHERVERPKEITIEYLDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               Q  +  G  A  +QHE DHL G LF DH+S L++ ++  K++++   +
Sbjct: 121 QFTPQTRHLTGFAARVVQHEYDHLEGKLFTDHVSTLRKSLLKNKLARIASGK 172


>gi|160880624|ref|YP_001559592.1| peptide deformylase [Clostridium phytofermentans ISDg]
 gi|189083068|sp|A9KM99|DEF_CLOPH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160429290|gb|ABX42853.1| peptide deformylase [Clostridium phytofermentans ISDg]
          Length = 163

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ + I  D IL + S+ IE++   I  LID+ML+ MY   G+GLAA Q+GVL RLVV
Sbjct: 1   MAKRNIRIMGDSILNKTSKVIEEVTPKIDTLIDDMLDTMYDAGGVGLAAPQVGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+        P++ INP+II+   + +  +  CLS+P     V R  ++ V+  D + +
Sbjct: 61  IDVSLE--GNEPIILINPEIISTDGEQTGDEG-CLSLPGKAGIVTRPNYVKVKAYDRHMK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA    HE+DHL+GIL+++ ++
Sbjct: 118 PFEVEGEGLLARAFCHEIDHLDGILYVEKVN 148


>gi|268589951|ref|ZP_06124172.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291314667|gb|EFE55120.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 169

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  LID++L+ MY + +GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIKCSPVTDF-AAVQTLIDDLLDTMYSTDNGIGLAATQIAETKSIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ ++     PMVF+NP+I+    + S  +  CLS+P+  ADV R   + V+  D + 
Sbjct: 60  VIDISENRDE--PMVFVNPEIVESEGETSYQEG-CLSVPEIYADVDRFLRVKVKAYDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           +   + +D  LA  +QHE+DHL+G +F+DHLS LKR+M
Sbjct: 117 KAFEVDSDEFLAIVMQHEIDHLHGKVFLDHLSPLKRNM 154


>gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii]
 gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii]
          Length = 248

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 1/163 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++ +PDP LR V+  I   +  +M L   M+E+MY  DG+GLAA Q+GV  RL+V + 
Sbjct: 56  LQIIKYPDPRLRAVNAKINVFDESLMRLAKEMIEIMYQDDGVGLAAPQVGVNVRLMVFNP 115

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                  N  + +NP+I+       + +EGCLS P    DV+RS  I V+ +D   Q   
Sbjct: 116 MGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVK 175

Query: 124 IYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +       A   QHE DHL G+LF D +     + +  ++  L
Sbjct: 176 LTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPELVAL 218


>gi|187935113|ref|YP_001885413.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187723266|gb|ACD24487.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
          Length = 147

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R +EKI+  ++ LI +MLE MY  DG+GLAA Q+G+L RL +
Sbjct: 1   MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          ++           V +EGCLS+P     V R  ++  R ++   +
Sbjct: 61  VDIGEGPLVFINPEILDTDGK------QVDEEGCLSLPGKTEPVMRPNYVKARALNEKWE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+ LLA  + HE DHLNG LFID  ++
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146


>gi|298346549|ref|YP_003719236.1| peptide deformylase [Mobiluncus curtisii ATCC 43063]
 gi|304389733|ref|ZP_07371692.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315655106|ref|ZP_07908008.1| peptide deformylase [Mobiluncus curtisii ATCC 51333]
 gi|315657036|ref|ZP_07909921.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236610|gb|ADI67742.1| peptide deformylase [Mobiluncus curtisii ATCC 43063]
 gi|304326909|gb|EFL94148.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315490587|gb|EFU80210.1| peptide deformylase [Mobiluncus curtisii ATCC 51333]
 gi|315492428|gb|EFU82034.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 164

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + + +  DP+LR     I    +  +  L++++LE +      GLAA QIGV  R  
Sbjct: 1   MAFREIRVVGDPVLRTPCDWITDPRDPGVKQLVEDLLENVDEDGRAGLAANQIGVSLRAF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             ++            +        D++    EGCLS+P      KR+ +  V  +D + 
Sbjct: 61  SWNIDGEIGYVLNPKLVAM----SEDEYQDGDEGCLSVPGLFYPTKRAWYARVEGIDLDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  ++  + L+  CLQHE DHL G L++D L R  R    +++ K+
Sbjct: 117 KPLVVEGEELMGRCLQHECDHLEGHLYLDKLERKYRKEALQQIRKM 162


>gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
           9 Structures
 gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With
           Actinonin
          Length = 147

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 96/150 (64%), Gaps = 3/150 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             + ADGLLA C+QHE+DHL G LF+D+LS
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLS 147


>gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
          Length = 156

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVMNFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 177

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV++P+E+    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL G+L+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTR 160


>gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
 gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
          Length = 162

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR +EKI+  I  + ++M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVEKIDDRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       MV INPKII  S+D  +  EGCLS+P     V+R   + V Y D N  
Sbjct: 61  IDMQDEDG---KMVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q +      A C  HELDHL+G+L+ D +     ++  +++ +L   +
Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKV----LNLSEEEVERLNNEK 162


>gi|291277234|ref|YP_003517006.1| polypeptide deformylase [Helicobacter mustelae 12198]
 gi|290964428|emb|CBG40278.1| polypeptide deformylase [Helicobacter mustelae 12198]
          Length = 171

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P P+LR+ S+ ++  ++ +   +D+M + M   +G+GLAAVQ+G L+R+++
Sbjct: 1   MAVLEVLSYPHPLLRQKSKEVQNFDASLHAFLDDMYDTMLEREGVGLAAVQVGRLHRILL 60

Query: 61  --IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDC 117
             I  Q+   +    +      +    +  ++  EGCLS+P +  +VKR   IT+ Y D 
Sbjct: 61  VNIPRQEDGKQYKEDLLEIINPVILHQEEEIFWNEGCLSVPGFYEEVKRYGSITLGYQDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               Q++ A G LA  LQHE+DHL GILFID LS
Sbjct: 121 FGGEQVLRAQGFLAVALQHEMDHLEGILFIDKLS 154


>gi|289449949|ref|YP_003475241.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184496|gb|ADC90921.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 160

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M  + +++  D  LR+ +RP++ I +  I  ++D+M++ +Y+T +G+GLAAVQ+G+L R+
Sbjct: 1   MAVREIIVDGDDRLRKKARPVDNIADPKIQQIVDDMIDTLYATGNGVGLAAVQVGILKRI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            VIDLQD    K          I         QEGCLS+P +  +V R A +TVR  D N
Sbjct: 61  FVIDLQDGKGLK----VYINPEIIDRQGSQCNQEGCLSLPGFWGEVIRPAKVTVRAFDRN 116

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKK 161
            +     A GL A C+ HE DHLNGILF D  +S  +     +K
Sbjct: 117 GKQFEQTATGLGAICISHETDHLNGILFKDLVISEEEAARFKQK 160


>gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107]
 gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107]
          Length = 201

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 2/160 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +       LR+ ++ I K+N  +  L  +ML  MY+  GIGLAA Q+ V  +L+VIDL
Sbjct: 31  LEIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I   S     Y+EGCLSIP    DV R   I + Y D   + + 
Sbjct: 91  DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + ADGL+A C+QHE+DHLNG+LF+D ++   +D + K++ 
Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELK 188


>gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT]
          Length = 177

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P+L + + P+++ +  ++  LI +M + M   +G G+AA QIGV  R+V
Sbjct: 1   MPVKPVLKMGEPLLLQKAEPVQQFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A +    V +NP +    ++     EGCLS+P  R  V R   +    
Sbjct: 61  IFGVGHNPRYPDAEQVPYTVLVNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQRLHYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D           G  A  +QHE DHL+GIL+   +  L
Sbjct: 121 YDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDL 159


>gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931041|sp|Q7WG25|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50]
          Length = 176

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LID+M E M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      +  NP I   S +     EGCLS+P  R  V R   I     
Sbjct: 61  FGFERNDRYPDAPAVPRTILCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   Q     A+G  A  +QHE DHL G L+   +  L +
Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTK 160


>gi|212635128|ref|YP_002311653.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212556612|gb|ACJ29066.1| Formylmethionine deformylase [Shewanella piezotolerans WP3]
          Length = 163

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R + P++ I++ +   ID+++E MY   DGIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDVRLKRKAEPVKDIDA-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  PMV INP+I+    +F   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSEE--RDQPMVLINPEIVETRGEFQG-EEGCLSIPGYRAKVNRHEGVKVTALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Q   I  D  LA  LQHE+DHL GI+F DHLS LK+ +  KK+ K  
Sbjct: 117 QAFEIDTDEFLAIVLQHEMDHLKGIVFTDHLSMLKQQIALKKVKKYK 163


>gi|256370663|ref|YP_003108488.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009455|gb|ACU52815.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM]
          Length = 180

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +  P++I+  P+LR+    IEK ++   I +LI NM + M    GIGLAA QIG+  RL 
Sbjct: 1   MILPILIYGHPLLRKRCLEIEKFSNSNQINSLIQNMYDTMGQAQGIGLAAPQIGISLRLF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +I+  +   +K   VFINPKI+     + + +EGCLS+P+   ++ R   + + Y D N 
Sbjct: 61  IIEYNNFYKKKFKQVFINPKILKIYGSYLITKEGCLSLPNIIENIIRKNHLIIEYYDENW 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +    +  GLL+  +QHE DH+ G  F+DH+S  K+  +  ++ K+ 
Sbjct: 121 KKYKQHFHGLLSIIIQHEYDHIEGKFFLDHISDQKKLFLHNQLKKIS 167


>gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211]
 gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 201

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    +  LR+ ++ + K+++ I  LI  ML  MYS  GIGLAA Q+G+  +L+VIDL
Sbjct: 31  LKIHTLGNLELRQTAQRVSKVDNSIRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I  FS     Y+EGCLSIP    +V R + I + + D   + + 
Sbjct: 91  DIENSTTPPIVLINPQITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGLL+ C+QHE+DHLNG+LF+D ++    + ++K++ +
Sbjct: 151 MNADGLLSRCIQHEMDHLNGVLFVDRVTNE--NDLSKELQE 189


>gi|150390546|ref|YP_001320595.1| peptide deformylase [Alkaliphilus metalliredigens QYMF]
 gi|167012061|sp|A6TRW8|DEF_ALKMQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149950408|gb|ABR48936.1| peptide deformylase [Alkaliphilus metalliredigens QYMF]
          Length = 147

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ SR ++KI+S I  L+D+M+E MY  DG+GLAA Q+G+L +++V
Sbjct: 1   MAIRLIRTDDDPVLRKKSRVVDKIDSRIHTLLDDMIETMYEADGVGLAAPQVGILKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I          EGCLS+P +  +V+R A + VR ++   +
Sbjct: 61  IDVGEGVIE------LINPEIIKETGSQCDVEGCLSLPGHSGEVERPAIVKVRGLNRQGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I    LLA  L HE+DHLNGILF D + + 
Sbjct: 115 MVEIQGTELLARALCHEIDHLNGILFTDKIIKE 147


>gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 156

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 91/148 (61%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++V+ PI+++      L+D+M E MYS +G+GLAA QIG   R+VV
Sbjct: 1   MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D          +   +IT  +   V  EGCLS+P    DV+R+A +TV Y D  ++
Sbjct: 61  IDVEDEHGLL----ELINPVITMREGTVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+GLLA C+QHE DHL+G LFID
Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144


>gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
 gi|39931000|sp|Q7V8G6|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
           9313]
          Length = 192

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   +P LR+VS  ++  + +++ +LI ++ + + +  G GLAA QIGV  R+V
Sbjct: 1   MAVKEILRMGNPQLRKVSNVVDDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      + INP +     D     EGCLS+P  R  V R + I  R
Sbjct: 61  LFGGGGPNPRYPEAPSIPQTLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++ +        +G  A  +QHE DHL+G+LF D L
Sbjct: 121 ALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRL 157


>gi|291563557|emb|CBL42373.1| peptide deformylase [butyrate-producing bacterium SS3/4]
          Length = 158

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  +P++++N   + LI++M E MY  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIRQIRTIGDEILTKECKPVKEMNERTLELIEDMFETMYENNGVGLAAPQVGVRKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D          +    I  +      QEGCLS+P     V R+  +  + ++ N +
Sbjct: 61  IDVEDGN-----QYVLINPEILETSGSQTGQEGCLSVPGKCGQVTRADHVKAKALNENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I ADGLLA C+ HE DHL+G L++D
Sbjct: 116 EYEIEADGLLARCILHECDHLDGKLYVD 143


>gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B]
          Length = 149

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 6/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ S+ +E I+     LI +M++ MY  DG+GLAA Q+G+L ++ V
Sbjct: 1   MAIRNIRTVGDAVLRKNSKNVEVIDDRTKVLIQDMIDTMYDADGVGLAAPQVGILKKIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+VFINP+I+     +   +  CLSIP   A+V+R   + V+ ++ N +
Sbjct: 61  IDIGEG-----PIVFINPEILETEGSYVDSEG-CLSIPGESAEVERPYKVKVKALNENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             I+  + LLA  + HE DHL G L+ID 
Sbjct: 115 EFILEGEELLARAICHENDHLYGTLYIDR 143


>gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 217

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 2/141 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  +++ I +L+ +ML  MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R  P+V INP+I+  S +  V  EGCLS+P     V+R + + VR +D    
Sbjct: 61  IDTSEE--RNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGA 118

Query: 121 HQIIYADGLLATCLQHELDHL 141
            ++I A+GLLA C+QHE+DHL
Sbjct: 119 ARVIQAEGLLAVCMQHEMDHL 139


>gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70]
 gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70]
          Length = 157

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P  IL  +  P+++ +  ++ L+++M E M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MAILPIVTYPADILETMCEPVKQFDRQLIQLLNDMYETMIDEDGVGLAAPQVGIAKQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R    + +    I  +    +  EGCLS P    +VKR+ ++ VR  D   +
Sbjct: 61  VDVGDKHGR----IELINPRIIEARGEQIGPEGCLSFPGLFGEVKRANYVKVRAQDRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A   LA  LQHE+DHLNGILF   +
Sbjct: 117 VFTLEATEFLARALQHEIDHLNGILFTSKV 146


>gi|161833710|ref|YP_001597906.1| peptide deformylase [Candidatus Sulcia muelleri GWSS]
 gi|189083080|sp|A8Z5V9|DEF_SULMW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|152206200|gb|ABS30510.1| peptide deformylase [Candidatus Sulcia muelleri GWSS]
          Length = 189

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++I+ +  LR+    I+K   DI  LI+NM + MY   GIGL+A QIG+  RL +I
Sbjct: 1   MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  +   +K   VFINP II       + +EGCLSIP+   ++KR   I + Y D N + 
Sbjct: 61  EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168
              + +GLL+  +QHE DH+ G LFID++  LK  +I K         K+ KL +L
Sbjct: 121 YKQHFNGLLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176


>gi|163790824|ref|ZP_02185249.1| peptide deformylase [Carnobacterium sp. AT7]
 gi|159873892|gb|EDP67971.1| peptide deformylase [Carnobacterium sp. AT7]
          Length = 164

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP+L   ++ + +I  +I+ L+++M E M + DGIG+AA Q+    RL +
Sbjct: 1   MSVLPILKYPDPMLITPTKEVTEITDEIVQLLEDMYETMVANDGIGIAAPQVNSNLRLAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ + +        +    I  +   ++  EGCLS P+    +KR+  I +RY D N  
Sbjct: 61  VEIDEESGL----YEMINPRIVHATGETIDVEGCLSFPEVFGTIKRADTIVLRYYDRNGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + AD  L+   QHEL+HL+G LF D +
Sbjct: 117 EFEVEADDYLSRAFQHELEHLDGKLFTDKI 146


>gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 177

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+ +    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAKPVLRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      V INP I   SD      EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSDTMEDGWEGCLSVPGLRGVVPRYTRVRYTGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL GIL+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTR 160


>gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017]
 gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017]
          Length = 189

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 90/148 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ + K++ +I  L   ML+ MYS DGIGLAA Q+ V  +L+V+D 
Sbjct: 17  LNIHTLGDRVLRQSAKRVSKVDDEIRELARQMLQTMYSADGIGLAAPQVAVGKQLIVVDT 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ +NPKI   SDD ++ QEGCLSIP    DV+R A I V Y D   + Q+
Sbjct: 77  DPEEPANQPIILLNPKIRRHSDDLALGQEGCLSIPGVYLDVRRPAQIEVAYKDEQGRPQV 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A  LLA  +QHE+DHL G++F+D + 
Sbjct: 137 IVATDLLARVIQHEMDHLTGVMFVDRVE 164


>gi|313901452|ref|ZP_07834909.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468280|gb|EFR63737.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 540

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%)

Query: 4   KPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            P+V    +P+LR  ++P+ ++  +I  L+D M   MY+ DGIGLAA Q+GV  R++V+D
Sbjct: 24  LPIVKGADEPVLRTPAQPVARVTREIRQLLDRMAATMYAADGIGLAAPQVGVSKRVIVVD 83

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + D       +  INP+I+   ++     EGCLS+P   A+V+R   + V  +D   +  
Sbjct: 84  VGDG-----LIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVERPTSVQVTGLDRRGRRI 138

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I  +G+LA CLQHE+DHL+G+L  D   ++
Sbjct: 139 WIEGEGVLARCLQHEIDHLDGVLITDRARKV 169


>gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 171

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M    G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSAELRTLVADMFETMDDARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFEASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|225028093|ref|ZP_03717285.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353]
 gi|224954563|gb|EEG35772.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353]
          Length = 158

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP L +V +P++KI   I  LI++M + MY   G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRKIRFIGDPCLNKVCKPVQKITPSIETLIEDMFDTMYEARGVGLAAPQVGILRRICV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        + +    I  +      +EGCLSIP   A V R+ ++ V+  D    
Sbjct: 61  IDVMDEDP-----IILINPEIIETAGEQTDEEGCLSIPGKCASVTRADYVKVKSFDMELN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             II  +GL A  LQHE+DHL+G+L+ +  +
Sbjct: 116 PVIIEGEGLRARALQHEIDHLDGVLYGERAN 146


>gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
 gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
          Length = 163

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            L    D ILR+ +  + +I+  +  +++ M ++M+  +GIGLAA Q+G+  R  +  + 
Sbjct: 2   ELRYLGDEILRKRAVLVPEIDGRVARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +      P+VFINP+I   S + + ++EGCLSIP   ADV R A + V   +   +   +
Sbjct: 62  E----GEPLVFINPEITATSPELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            ADG+LA  +QHE DHLNG+LF+D L   KR+ + +
Sbjct: 118 EADGMLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153


>gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237]
 gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237]
          Length = 196

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I K    +  L++NM E MY+  G+GLAA QIG+  RL VI
Sbjct: 1   MILPIIAYGDPVLRKVGTDIAKDYPKLETLVENMWETMYNASGVGLAAPQIGLPIRLFVI 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +  +               VF+N KI   + +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSEDEDLSPEDQKALDGFKKVFVNAKIEEETGEEWNFNEGCLSIPDVREDVNRKET 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y+D N   +     GLLA  +QHE DH+ GILF D LS LK+ ++  K+S + + +
Sbjct: 121 IKITYLDENFNEKSESYGGLLARVIQHEYDHIEGILFTDKLSSLKKRLLKGKLSNISKGK 180


>gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 160

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++ + PIE++      L+D+M E MY+ DG+GLAA Q+G   R+VV
Sbjct: 5   MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       +      +IT  +      EGCLS+P    DV+R+  +TV Y D  ++
Sbjct: 65  IDVQDEHGLLELV----NPVITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + + A+GLLA C+QHE DHL G LFID   RL++
Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRK 155


>gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 166

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    ++ +PD  L+    P++  N ++ + ID+++E      G +G+AA Q+GVL R+ 
Sbjct: 1   MASLEILTYPDERLKTGCEPVDTFNPEMQSFIDHLIETCSGGPGAVGIAAPQVGVLQRIC 60

Query: 60  VID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++D          +  + +    IT  D F+V +EGCLS+PDY   V R+  I ++  D 
Sbjct: 61  IVDATRARRPVDNHGHLVLINPEITAWDGFAVGREGCLSVPDYTGKVIRAEKIELKAQDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156
           N +       G  A   QHE+DHL+GILF+D L    + LKR 
Sbjct: 121 NGKPCTFTMSGFEARIAQHEVDHLDGILFLDRLVSRHADLKRR 163


>gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|39931029|sp|Q7W0Q0|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931034|sp|Q7W4K0|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis]
 gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I]
          Length = 176

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LID+M E M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      +  NP I   SD+     EGCLS+P  R  V R   I     
Sbjct: 61  FGFERNDRYPDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   Q     A+G  A  +QHE DHL G L+   +  L +
Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTK 160


>gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048]
 gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603]
 gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
 gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621]
 gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621]
 gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
 gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603]
 gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048]
          Length = 156

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             ++ AD  LA  +QHE+DHL+G+LF    S++KR
Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFT---SKVKR 148


>gi|150018308|ref|YP_001310562.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|149904773|gb|ABR35606.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 150

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D +LR+ S+ +E ++  I  ++D+M+E MY+  +G GLAA QIG+L RLV
Sbjct: 1   MALRKIRLFGDEVLRKKSKEVEVVDEKIRQILDDMVETMYNTENGGGLAAPQIGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLS P     + R   +TV+ +D N 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGSQEVIEGCLSNPHVFGRLLRPEKVTVQALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 KEIILTGTGDLAKCFCHEIDHLEGILFTDFVT 146


>gi|323699398|ref|ZP_08111310.1| peptide deformylase [Desulfovibrio sp. ND132]
 gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132]
          Length = 165

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++  +  +PD +L   + PI +I  ++  LI+NM++ MY +DG+GLAA Q+    RL+ +
Sbjct: 1   MRLEICTWPDEVLEAKAEPITEITPELDELIENMVQTMYESDGVGLAAPQVNQSIRLICV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+    +    +  CLS P+    V+R   + V+ ++ + + 
Sbjct: 61  DQTGPKERGDLRVLINPEIVECDGEVESDEG-CLSCPELNLKVRRKERVKVKALNRSGKE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +   GLLA  LQHE+DHL G+   D   RLK+ M  KK  +  +
Sbjct: 120 ICVETGGLLAIILQHEIDHLEGVTLADRSGRLKKAMYRKKALRWKR 165


>gi|311742536|ref|ZP_07716345.1| peptide deformylase [Aeromicrobium marinum DSM 15272]
 gi|311314164|gb|EFQ84072.1| peptide deformylase [Aeromicrobium marinum DSM 15272]
          Length = 203

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+  +  P++ R    +   + D+  L+ +M+  MY+ +G+GLAA Q+GV  ++ V 
Sbjct: 14  SVRPITRWGTPVMHRELADVTTFDEDLRVLVRDMVATMYAANGVGLAANQVGVDLKVFVF 73

Query: 62  DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    +   V  NP                EGCLS+P       R     V   D +
Sbjct: 74  DCPDEDSERVTGVVCNPVLTLPALGDRRLDDDDEGCLSLPGAFTTCARPDAAHVSGFDEH 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            +       GLLA CLQHE DHL G +F D +    R  + K
Sbjct: 134 GEPVEFTGSGLLARCLQHETDHLFGTVFGDRVPERSRKKLYK 175


>gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241]
 gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241]
          Length = 156

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETSCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|146297087|ref|YP_001180858.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410663|gb|ABP67667.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 164

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + I+ D ILR+ S+ +EK +  + +L+D+M E MY  +GIGLAA Q+G+L R +V+D
Sbjct: 1   MRKIRIYEDEILRKKSKTVEKFDKRLHDLLDDMKETMYEANGIGLAAPQVGILKRAIVVD 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D A             I +S+   +  EGCLS+P+   +V+R   + VR  + + +  
Sbjct: 61  PGDGAIELVNPQ------IEYSEGSQIDIEGCLSVPNVWGEVERPKKVIVRGQNRHGEEI 114

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168
            I A+ LLA  L HE+DHL+GILFID + R    + + KK SK  ++
Sbjct: 115 KIEAEDLLARALCHEIDHLDGILFIDKVIRFVTEEEVEKKRSKGQKM 161


>gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1]
 gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1]
          Length = 196

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  + +  +++  +I +M + M + +G+GLAA Q+G+  RL V
Sbjct: 1   MAILPIRIVGDPVLHEPTEAVSQSPAELAEIIADMYDTMDAANGVGLAANQVGLPLRLFV 60

Query: 61  IDLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D                 V    +      D     EGCLS+P  +    R+ +  
Sbjct: 61  YDCPDVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V   D +     I   G  A  LQHE+ HL+G L++D L         K + +
Sbjct: 121 VTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173


>gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
 gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
          Length = 160

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++ + PIE++      L+D+M E MY+ DG+GLAA Q+G   R+VV
Sbjct: 5   MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       +      +IT  +      EGCLS+P    DV+R+  +TV Y D  ++
Sbjct: 65  IDVQDEHGLLELV----NPVITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + A+GLLA C+QHE DHL G LFID   RL+++
Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRKE 156


>gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
           [Ralstonia solanacearum IPO1609]
          Length = 177

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL GIL+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFTR 160


>gi|56419706|ref|YP_147024.1| peptide deformylase [Geobacillus kaustophilus HTA426]
 gi|56379548|dbj|BAD75456.1| polypeptide deformylase [Geobacillus kaustophilus HTA426]
          Length = 157

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ P+PIL +   P+   +  +  L+D+M E M + DG+GLAA QIGV  ++ V
Sbjct: 1   MAVLSIVMHPNPILEQPCAPVTIFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  INP +I    +    +  CLS P    +V R+ F+ VR  +   +
Sbjct: 61  VDVGDEHGR---IELINPVVIEARGEQVDVEG-CLSFPGLFGEVPRAKFVKVRAQNRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  LQHE+DHL+G+LF   +
Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKV 146


>gi|254247880|ref|ZP_04941201.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184]
 gi|124872656|gb|EAY64372.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184]
          Length = 177

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  +++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     +     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYLPPEMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   Q     A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|222824460|ref|YP_002576034.1| peptide deformylase [Campylobacter lari RM2100]
 gi|222539681|gb|ACM64782.1| peptide deformylase [Campylobacter lari RM2100]
          Length = 173

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  +E  + D+  L+D+M E M    G+GLAA+Q+ V  R +++
Sbjct: 1   MIRKIITYPNPRLFLESEKVENFDKDLHVLLDDMYETMIENKGVGLAAIQVDVPIRALLV 60

Query: 62  DLQDHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           D+ D    +         INP I    D+     EGCLSIP +  DV R   I + Y D 
Sbjct: 61  DIGDEEGEQKDKQTLLEIINPIITPLDDEKISCNEGCLSIPGFYEDVMRYKNIQLDYQDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             + Q + A   LA  +QHE+DHL+G LFI+ LS LKR 
Sbjct: 121 FGKPQSLQAHDFLAVAIQHEVDHLDGHLFIEKLSFLKRQ 159


>gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001]
 gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001]
          Length = 180

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P++   DP LR+V+  + +    + ++  L+D++ + M + DG GLAA QIGV  R
Sbjct: 1   MAIRPVLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALR 60

Query: 58  LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +V+           A      V INP +       S   EGCLS+P  R  V R   I  
Sbjct: 61  VVIFGFTTNPRYPEAPPIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPRWDRIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D   +      +G  A  +QHE DHL+G+LF D +  
Sbjct: 121 TGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIED 160


>gi|154497980|ref|ZP_02036358.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC
           29799]
 gi|150272970|gb|EDN00127.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC
           29799]
          Length = 175

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   DP+L + +  +   +  +  L+D+M+E +  + G+GLAA QIG+L R+VV
Sbjct: 12  MALRTIITKGDPVLSKKAHLVTNFDEKLAILLDDMVETLRDSGGVGLAAPQIGILRRVVV 71

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +    +     +NP+II    +   ++  CLS+P     V R     V+  +   +
Sbjct: 72  VINDEDQVIE----LVNPEIIATEGEQVGFEG-CLSVPGRWGKVARPMKARVKAQNRQGE 126

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +  +GL A C  HELDHL+G LF +   +L
Sbjct: 127 WFEVEDEGLTARCFCHELDHLDGHLFTELTDKL 159


>gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
 gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
          Length = 175

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L    DPIL +V+ P+ +     + NLI+ ML  +    G+GLAA Q+G   +++
Sbjct: 1   MTLR-LRQLGDPILTQVAEPVAEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVI 59

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++          A +  P+V +NP+ +  S++  +  EGCLS+P+ R  V RS  + V Y
Sbjct: 60  IVASRPNPRYPDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEY 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
                  Q +      A   QHE DHL G LF+D 
Sbjct: 120 HTPEGSRQRVVWRDFPARIFQHEYDHLRGRLFLDR 154


>gi|21222943|ref|NP_628722.1| polypetide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785943|ref|ZP_05524374.1| polypetide deformylase [Streptomyces lividans TK24]
 gi|289769835|ref|ZP_06529213.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|8134401|sp|Q9XAQ2|DEF3_STRCO RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|5042279|emb|CAB44533.1| putative polypetide deformylase [Streptomyces coelicolor A3(2)]
 gi|289700034|gb|EFD67463.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 208

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +    + +L R  R + +   D+  LID+M   MY  +G GLAA Q+GV  RL V 
Sbjct: 25  AVRRVTEVGEEVLHRPCRDVTEFGPDLAALIDDMFRTMYVAEGAGLAANQVGVDLRLFVY 84

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +           +    CLS+P     V R     VR +D +
Sbjct: 85  DCPDDEGVRHVGHLVNPVLDALDPAARRLLDEGEGCLSVPGAVMAVPRPDRAVVRGLDKD 144

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
               ++   G  A CL HE DH+NG +++D LS  +R    ++
Sbjct: 145 GVPLLVEGTGYFARCLAHETDHVNGHVYLDRLSGRERKAALRQ 187


>gi|107028797|ref|YP_625892.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116690044|ref|YP_835667.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|170733379|ref|YP_001765326.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|105897961|gb|ABF80919.1| Peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116648133|gb|ABK08774.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|169816621|gb|ACA91204.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 177

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  +++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYLPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   Q     A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 197

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L R+++P++K +  ++  LI +MLE M +  G GLAA QIGV  ++V
Sbjct: 19  MTIHSILKMGDPRLLRIAQPVQKFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVV 78

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +                 P V +NP I    +D     EGCLS+P  R  V R   I   
Sbjct: 79  IFGSNEPNRRYPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPRWLHIRYS 138

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D +       A+G  A  +QHE DHL G L+   +   
Sbjct: 139 GFDAHGSPIDRVAEGFHARVVQHECDHLMGKLYPMRVRDF 178


>gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
           13528]
 gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
           13528]
          Length = 152

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ SR +E+IN  I  L+D+M E +Y  DG+GLAA Q+GVL R++V
Sbjct: 1   MALRTVRKYGDSILRKKSRKVEEINERIHVLLDDMEETLYEEDGVGLAAPQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +         +            EGCLSIP    +V+R   + V+ ++   +
Sbjct: 61  IDVGEGILKLVNPEITYSEGKAVDI------EGCLSIPGSEGEVERPKKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +I  + LLA  L HE+DHLNGILFID + +
Sbjct: 115 EIVIEGEDLLARALCHEIDHLNGILFIDKIIK 146


>gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803]
 gi|2499924|sp|P73441|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
          Length = 187

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 1/159 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++  I  L   ML+ MYS +GIGLAA Q+G+  +L+V+D 
Sbjct: 17  LELHYLGDKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSANGIGLAAPQVGINKQLLVVDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +     + P++ INP+I   S++  V +EGCLS+P+   DV R   I V Y D + + Q 
Sbjct: 77  EQDKPDEPPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKK 161
                L A  +QHE+DHLNG++F+D + + L      KK
Sbjct: 137 RLFAELTARVIQHEMDHLNGVMFVDRVDNPLALAESLKK 175


>gi|167768544|ref|ZP_02440597.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1]
 gi|317498700|ref|ZP_07956992.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710068|gb|EDS20647.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1]
 gi|291560506|emb|CBL39306.1| peptide deformylase [butyrate-producing bacterium SSC/2]
 gi|316894042|gb|EFV16232.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 159

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +LR+  + ++++   +  L+++M + MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRQIRVLGDDVLRKKCKEVKEMTPRMHTLVEDMYDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +       +      +IT  +   V +EGCLS+P   A VKR   +     D +  
Sbjct: 61  IDTGEEGECVTLV----NPVITLKEGEQVGEEGCLSLPGKVAVVKRPDHVICEAFDEDMN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GL A  L HE DHL+GIL+ D      RD+  +++ 
Sbjct: 117 PITVEGFGLFARALCHETDHLDGILYPDVAEEPARDVTMEEVE 159


>gi|225628893|ref|ZP_03786927.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225616739|gb|EEH13787.1| peptide deformylase [Brucella ceti str. Cudo]
          Length = 214

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 51  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A  K    +INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 111 LELDRAAGSKI---YINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214


>gi|315185956|gb|EFU19720.1| peptide deformylase [Spirochaeta thermophila DSM 6578]
          Length = 163

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            L    D  LR+ +  + +I+  +  +++ M ++M+  +GIGLAA Q+G+  R  +  + 
Sbjct: 2   ELRYLGDETLRKRAVLVPEIDGRLARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +      P+VFINP+I   S + + ++EGCLSIP   ADV R A + V   +   +   +
Sbjct: 62  E----GEPLVFINPEITATSPELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            ADGLLA  +QHE DHLNG+LF+D L   KR+ + +
Sbjct: 118 EADGLLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153


>gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum]
 gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG']
          Length = 184

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +PILR+++ PI        +    +D+M+E M  +DG+GLAA Q+ V  +
Sbjct: 1   MALLKIAKMGNPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQ 60

Query: 58  LVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VVI+  ++    +          NP     S +     EGCLS+ + R  V RS  + +
Sbjct: 61  VVVIESMENDRYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVTRSRAVKM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +D +     +  +   A  LQHE DHL G LF+D +  +      ++  K
Sbjct: 121 EALDRHGNTITLEWEDFPAVVLQHETDHLRGHLFLDRMKDMSTLTQLEEFQK 172


>gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
          Length = 158

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M + DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVILLKDMYETMVAADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  IDIGDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERAEYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 IFLLEANGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701]
 gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701]
          Length = 201

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 87/150 (58%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+ ++ I K++  +  L  NML  MYS  GIGLAA Q+GV  +++VIDL
Sbjct: 31  LTIHRLGDQVLRQSAKRISKVDESVRELARNMLRSMYSAHGIGLAAPQVGVHKQVLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   PMV +NP+I   S   + Y+EGCLSIP     V R +   V Y D   + + 
Sbjct: 91  DPENPATPPMVLVNPEINATSAALNTYEEGCLSIPGVYLSVVRPSEAEVSYRDEQGRPRR 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I ADGLLA C+ HE+DHL G+LF+D +S  
Sbjct: 151 IKADGLLARCILHEMDHLKGVLFVDLVSDE 180


>gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 177

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D +       A+G  A  +QHE DHL GIL+   +    R
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFSR 160


>gi|239815924|ref|YP_002944834.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239802501|gb|ACS19568.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 179

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+   +  ++  L+ +M E M + +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMLAVNGAGLAAPQIGVDQQLV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I    D+     EGCLS+P  R  V R A I   
Sbjct: 61  IFGTDVVNPRYPDAPPVPRTVLLNPVITPIGDEEEEGWEGCLSVPGLRGVVPRFANIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D         A G  A  +QHE+DHL G L+   +    R
Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSR 162


>gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102]
 gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102]
          Length = 187

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 93/148 (62%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++ ++  ++  ML+ MYS DGIGLAA Q+G+  +L+VIDL
Sbjct: 17  LELHYLGDRVLRQAAKRISKVDDELRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDL 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I   S D SV +EGCLSIP+   DVKR   + + Y D   + + 
Sbjct: 77  EPENAANPPLVLINPTIKQVSRDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A+ LL  C+QHE+DHLNG++F+D + 
Sbjct: 137 LKANDLLGRCIQHEMDHLNGVVFVDRVE 164


>gi|206560457|ref|YP_002231221.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|198036498|emb|CAR52395.1| putative deformylase [Burkholderia cenocepacia J2315]
          Length = 177

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPKI     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   Q     A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|320530181|ref|ZP_08031251.1| peptide deformylase [Selenomonas artemidis F0399]
 gi|320137614|gb|EFW29526.1| peptide deformylase [Selenomonas artemidis F0399]
          Length = 156

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 92/148 (62%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++V+ PI+++      L+D+M E MY+++G+GLAA QIG   R+VV
Sbjct: 1   MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYASNGVGLAAPQIGKSIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D       +      +IT  +   V  EGCLS+P    DV+R+A +TV Y D  ++
Sbjct: 61  IDVEDEHGLLELV----NPVITMREGSVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+GLLA C+QHE DHL+G LFID
Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144


>gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 177

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R+++P+++ N  ++  LI +M E M + +G GLAA QIGV  ++V+
Sbjct: 1   MIHEILKMGDPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGQNARYPDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGH 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           D   Q     A+G  A  +QHE DHL G L+   ++  
Sbjct: 121 DQYGQPIDRIAEGFHARVVQHECDHLIGRLYPMRITDF 158


>gi|294102012|ref|YP_003553870.1| peptide deformylase [Aminobacterium colombiense DSM 12261]
 gi|293616992|gb|ADE57146.1| peptide deformylase [Aminobacterium colombiense DSM 12261]
          Length = 164

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 6/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +PDP+LR+ +  I+  +S +M+LI+ M  +M  +DG+GLAA Q+GV  +L ++   +
Sbjct: 6   IRTYPDPVLRKETEAIDLFDSKLMDLIEEMKVIMLESDGVGLAAPQVGVSKKLAIVYYDE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     +   I+  +D   V +EGCLS P    +V R   + +   + + +   I 
Sbjct: 66  TL------YVLINPILLKADGEQVSEEGCLSFPGIFGNVLRPRHVVIEAYNEHGEKLTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A+  LA    HE+DHL G L IDH S LK+++I K+M +  +
Sbjct: 120 AEDFLARAFLHEMDHLEGRLLIDHFSPLKKNIIRKRMRQHAK 161


>gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506]
 gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506]
          Length = 186

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 89/148 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D  LR+ ++ +  ++++I  L+  ML+ MYS +GIGLAA Q+ V  +++V+D 
Sbjct: 17  LTIHTLGDRALRQPAKRVASVDAEIRQLVREMLQTMYSAEGIGLAAPQVAVQKQVIVVDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I  +S +  V+QEGCLSIP    +VKR   I V Y D   + Q 
Sbjct: 77  EPDNAANPPLVLINPSIKKYSGEVCVFQEGCLSIPGVYLEVKRPEAIEVFYRDEYGRPQT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A  LL+  +QHE+DHLNG+LF+D + 
Sbjct: 137 LKATELLSRAIQHEMDHLNGVLFVDRVE 164


>gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645]
 gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645]
          Length = 194

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 1/151 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P P LR  S+P++++++D+  ++  M E+MY   GIGLAA Q+ +  RL  +
Sbjct: 1   MPLEVVHYPHPTLRYQSKPVKRVDADLRKIVAEMFELMYENRGIGLAANQVDLPIRLF-V 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                   +   +     +I+        +EGCLS+P     VKR A I     +   + 
Sbjct: 60  ANLSGTKGEGEELVFINPVISRPKGNEEEEEGCLSLPQVFGPVKRPAEIQFDAYNLQGEL 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                DG+LA  +QHE DHL+GI+F D +  
Sbjct: 120 FSQRIDGMLARVVQHETDHLDGIMFFDRMQP 150


>gi|295395930|ref|ZP_06806115.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971203|gb|EFG47093.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 164

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+LR V  P+ +     + L  ++L+         +AA QIGV  R   
Sbjct: 1   MANRTIRTFGDPVLRTVCEPVTQFGESTVALAQDLLDTAAPEGRAAVAAPQIGVAVRAFG 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            DL            +         +     EGCLS+P       R  F TV  +D + Q
Sbjct: 61  YDLHGRRGVVFNPEVVTR------GERRDIDEGCLSVPGLFFPTPRYEFATVHGVDEHGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +  DG+ A  LQHE DHLNG++++  L   +R    +++ 
Sbjct: 115 PIEVSGDGVFAQMLQHETDHLNGVVYVQTLPSERRKEAMRQIR 157


>gi|323701801|ref|ZP_08113472.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574]
 gi|323533337|gb|EGB23205.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574]
          Length = 151

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   D ILR+ ++P++++  +I+ L+DNM + MY+  G+GLAA QIGV  R+VV
Sbjct: 1   MAVYQIVEIGDEILRQKAKPVKEVTLNIIKLLDNMADTMYANKGVGLAAPQIGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          +               EGCLS+P    +V R+  I V+ ++   +
Sbjct: 61  VDVGDGLVELINPEIVEATGSVIDT------EGCLSVPGMIGEVARAERIVVQGLNRKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A G LA   QHE+DHL+GI+++D    L++
Sbjct: 115 QVTYQAKGFLARAFQHEIDHLDGIIYVDKAKNLRK 149


>gi|146276206|ref|YP_001166365.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554447|gb|ABP69060.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 163

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +PDP L +   P       +  L  +ML  MY   G GLAA Q+G + RL V
Sbjct: 1   MAVRPILRWPDPRLSQPCAP-AVPGPALEELASDMLATMYHAQGRGLAAPQVGEMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  S +     EGCLSI   R  V R+  I +R+      
Sbjct: 60  MDTVWKDGPAEPQVFVNPEILWMSGERVEGPEGCLSIAGPRLTVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
            Q     G  A C QHE+DHL+GI+ +
Sbjct: 120 EQEALLSGFAAICAQHEIDHLDGIVIL 146


>gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 180

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L + +R +       +  L+ +M+E M    G GLAA Q+    RL 
Sbjct: 5   MTLLKIARMGHPVLLQPARAVTDPQAPALRTLVADMIETMLDAQGAGLAAPQVHHGLRLF 64

Query: 60  VIDLQD------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V  +              P   INP +     +     EGCLSIP  R  V R   I  R
Sbjct: 65  VYQVPPGRSAGEDDPPCPPAALINPVLDPVDTEMVDRLEGCLSIPGMRGWVPRYRRIAYR 124

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++   Q     A G LA  LQHE DHL+GIL+   +  L R     +M++
Sbjct: 125 GINGQGQPVHGVASGFLANVLQHEYDHLDGILYPMRMPDLGRMGFDSEMAR 175


>gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4]
 gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4]
          Length = 162

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR +EKI++ I  + ++M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVEKIDNRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       MV INPKII  S+D  +  EGCLS+P     V+R   + V Y D N  
Sbjct: 61  IDMQDEDG---KMVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q +      A C  HELDHL+G+L+ D +     ++  +++ +L   +
Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKV----LNLSEEEVERLNNEK 162


>gi|325290451|ref|YP_004266632.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965852|gb|ADY56631.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 150

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   + ILR  ++ ++KI  +I+ L++N+ + +Y++ G+GLAA QIG+  R+ V
Sbjct: 1   MAVYQIVKMGEDILREKAQEVKKITPNILKLLENLTDTLYASQGVGLAAPQIGISKRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D        V I              +EGCLSIP  + +VKRSA + V+  D    
Sbjct: 61  VDIGDGLFELINPVIIERYGEEI------DKEGCLSIPGIQGEVKRSAKVVVQCQDREGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 +G LA   QHE+DHL+G+LF+D
Sbjct: 115 LVQYAGEGFLARAFQHEIDHLDGVLFVD 142


>gi|294853733|ref|ZP_06794405.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|294819388|gb|EFG36388.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
          Length = 184

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 21  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMCAAPGIGITAPHIGISKRVVV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 81  L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 138 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 184


>gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
 gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
          Length = 190

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 88/161 (54%), Gaps = 11/161 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F DP+LR+V + I+K    +  LIDNM E MYS +GIGLAA QIG+  RL VI
Sbjct: 1   MILPIRAFGDPVLRKVGKDIDKDYPGLQELIDNMFETMYSANGIGLAAPQIGLDIRLFVI 60

Query: 62  DLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D+                 +   VFIN +I+  S +   + EGCLSIPD R DVKR   I
Sbjct: 61  DVTPLAEDEDYEDIKDELAEFKKVFINAQILEESGEEWKFNEGCLSIPDVREDVKRKGTI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + Y D N          + A  +QHE DH+ GILF DHLS
Sbjct: 121 VIEYYDENFVKHTETFSDIRARVIQHEYDHIEGILFTDHLS 161


>gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
 gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
          Length = 202

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+    +P+L +V++P++ +++++   I++M E MY+ DGIGLAA Q+G   RL+V
Sbjct: 19  MSILPVYTLGEPVLNKVAKPLKGVDAEMKQFIEDMFETMYNADGIGLAAPQVGKSLRLLV 78

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D  + +    + P+V INP+I+      S  +EGCLS+P    +V R   IT++Y D +
Sbjct: 79  VDVSVMEDYQDEKPLVVINPQILETKGL-STMEEGCLSVPGVHEEVTRPKQITLKYRDAD 137

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++   DG++A  LQHE++HL G LFID+L    R +  +++  +   
Sbjct: 138 FVERVEIYDGMMARVLQHEIEHLQGNLFIDNLDAKTRRLHREELDAIKNG 187


>gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 152

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 3/139 (2%)

Query: 29  MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
             L+D+M + MY   GIGLAA Q+ V  R +VID+ D  +   P VF+NP+I++   +  
Sbjct: 14  QALLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSDEKNL--PQVFVNPEIVSKQGEQL 71

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             +  CLS+P   ADV R+  ITVRY+D   Q Q ++ADGLLA C+QHE+DHL+G LF+D
Sbjct: 72  CQEG-CLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVD 130

Query: 149 HLSRLKRDMITKKMSKLVQ 167
           +LS LKR+M+ KK++K  +
Sbjct: 131 YLSPLKREMVRKKLAKQRK 149


>gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z]
 gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z]
          Length = 162

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 6/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + I+   +L +V+ P++ I  +++ ++D M+ ++    G+GLAA Q+G+  R  V++  
Sbjct: 2   EIQIYGKTVLAQVAEPVDTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPG 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R      INP+I+   + FS  +EGCLS+P     V+R   ITVRY +   +    
Sbjct: 62  DKVRR-----VINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRYTNEAGELIEE 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 A    HE DHL+GILF+D +S + + MI K++  L +L++
Sbjct: 117 ELKDYPARVFLHEYDHLDGILFVDRISPIAKKMIAKQLEDL-RLKE 161


>gi|86357835|ref|YP_469727.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86281937|gb|ABC91000.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 164

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V +P+   ++ +  L +++L  M +  G+G+ A  IGVL R+ V
Sbjct: 1   MPVRPILRYPHPGLKTVCQPVTAFDASLAALAEDLLATMRAAPGVGITAAHIGVLLRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +        +++NP+I   S +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  L---ELDRADGVRLYVNPQITWRSQETISHAEGSVSMPGATEEVTRPRAIRFRYQDAGGI 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+G LA C+QHE+D L+GI ++  LSRLKR+ + KK  K
Sbjct: 118 VHEKAAEGFLAICVQHEVDQLDGIFWLQRLSRLKRERLVKKWEK 161


>gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
 gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
          Length = 174

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LR+ ++ +      DI  LI +M E +  + G+GLAA Q+ V  RL 
Sbjct: 1   MAVLAIARMGHPVLRQSAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +  +       +          INP +    D+  +  EGCLS+PD R +V R   I   
Sbjct: 61  IYSVPLARSEGEDDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRYKRIWYA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D + Q     A G  A  +QHE+DHL+GIL+   ++ + +    K++++
Sbjct: 121 GFDQHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKEITR 171


>gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii]
          Length = 177

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV++P+ + +  ++  L+ +M E M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHAILKMGDPRLLRVAQPVGQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V  NP I   SD+     EGCLS+P  R  V R   I  R  
Sbjct: 61  FGFEHNERYPDAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYRHIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D + Q     A+G  A  +QHE DHL G L+   +    +
Sbjct: 121 DPHGQPIEREAEGFHARVVQHECDHLIGRLYPSRIEDFSK 160


>gi|257460312|ref|ZP_05625415.1| peptide deformylase [Campylobacter gracilis RM3268]
 gi|257442377|gb|EEV17517.1| peptide deformylase [Campylobacter gracilis RM3268]
          Length = 172

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L + S  + K ++ +  L+D+M E M + +GIGLAA+Q+G   R ++I
Sbjct: 1   MILNVLTYPNKKLYQRSIEVVKFDAALGELLDDMYETMIAKNGIGLAAIQVGRPVRALII 60

Query: 62  DLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    I      I   +   V+QEGCLS+P +  DV R+ FITV++ D   
Sbjct: 61  NLANEEKIQDKKDLIEIINPQILKKEGEVVFQEGCLSVPGFYEDVTRAEFITVQFQDRAG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               + A  LLA C+QHE+DHL+G LFI+ +   KR    K+  K ++ +
Sbjct: 121 NTHEMDASELLAVCIQHEMDHLDGHLFIERIGYNKRKKFDKEFKKSLKEK 170


>gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 153

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80
             +  ++ +L D+ML  MY   GIGLAA QIGV+ RL+V+D  ++      P+V  NP+I
Sbjct: 2   TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEI 61

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           I  SD  + Y+EGCLSIP+  ADV R A + VR++D +   Q      L ATC+QHE+DH
Sbjct: 62  IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121

Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L+G LFID+L  +KR MIT+KM+KL + 
Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149


>gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 153

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80
             +  ++ +L D+ML  MY   GIGLAA QIGV+ RL+V+D  ++      P+V  NP+I
Sbjct: 2   TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEI 61

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           I  SD  + Y+EGCLSIP+  ADV R A + VR++D +   Q      L ATC+QHE+DH
Sbjct: 62  IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121

Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L+G LFID+L  +KR MIT+KM+KL + 
Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149


>gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
 gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
 gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 179

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A    P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D   Q      +G  A  +QHE DHL G L+   ++   +
Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|256845417|ref|ZP_05550875.1| peptide deformylase [Fusobacterium sp. 3_1_36A2]
 gi|256718976|gb|EEU32531.1| peptide deformylase [Fusobacterium sp. 3_1_36A2]
          Length = 174

 Score =  114 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKEVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VC----DDGNGVVRKVINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165


>gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429]
 gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429]
          Length = 165

 Score =  114 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 99/164 (60%), Gaps = 6/164 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++ DPILR+ ++ ++     +  + ++ML+ MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 3   IRLYGDPILRKSAKAVKDF-KYLQEIKEDMLKTMYLEDGVGLAAPQVGLSLRFFVMD--- 58

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  +NP+II  S++  + +EGCLS+P    +V+R  ++ +++ D   + Q   
Sbjct: 59  --DGSGPLFIVNPEIIAHSEEKEIGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRL 116

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +G  A  +QHE DHL+GILFIDHL    +  +  ++SK++++R
Sbjct: 117 FEGYSARIVQHERDHLDGILFIDHLPNAVKRRLAPELSKIMRMR 160


>gi|78224736|ref|YP_386483.1| formylmethionine deformylase [Geobacter metallireducens GS-15]
 gi|78195991|gb|ABB33758.1| Formylmethionine deformylase [Geobacter metallireducens GS-15]
          Length = 168

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  +P++ +P P+L++VS  +  I+ +I  LID++L+ M +    +G+AA QIG   R+ 
Sbjct: 1   MPAQPILCYPHPVLKKVSHAVAVIDDEIRGLIDDLLDTMRAGPGSVGVAAPQIGATLRVC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D+    H K        +    I   +  ++ +EGC+S+PDY  DV+R+  ITVR+ D
Sbjct: 61  VVDVSGSRHGKENNHGVLVMVNPEIVHREGAAIMREGCMSVPDYTGDVERATTITVRFRD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                + I A G  A  +QHE+DHL+GILF+D +  LK  +  +K
Sbjct: 121 GEGTEREISASGFEAVAIQHEMDHLDGILFLDRIVSLKTGLFRRK 165


>gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 179

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A    P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D   Q      +G  A  +QHE DHL G L+   ++   +
Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
           nagariensis]
 gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
           nagariensis]
          Length = 177

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDP LR V+  I   +  ++ L + M+EVMY  DG+GLAA Q+GV  RL+V + 
Sbjct: 11  LQIVKYPDPRLRAVNARIGVFDDSLLRLANEMIEVMYQDDGVGLAAPQVGVNIRLMVFNP 70

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                  N  + +NP+I+       + +EGCLS P    DV+RS  ITV+ +D N Q   
Sbjct: 71  AGRDRPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVR 130

Query: 124 IYADGLL-ATCLQHELDHLNGILFIDHLSR 152
           +       A   QHE DHL G+LF D +  
Sbjct: 131 LQLTDPWVARIFQHEYDHLQGVLFHDRMKP 160


>gi|260887303|ref|ZP_05898566.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|330838943|ref|YP_004413523.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|260862939|gb|EEX77439.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|329746707|gb|AEC00064.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
          Length = 155

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +     P+L+ +  P+E++++ +  L+D+M E MY  +GIG+AA Q+G   R+VV
Sbjct: 1   MSLLEIKKAGAPVLKEICAPVERVDARLRKLLDDMAETMYEANGIGIAAPQVGEALRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D               ITF +      EGCLS+P    +V+R+A + V ++D   +
Sbjct: 61  IDIGDGIIELV------NPKITFREGSETDSEGCLSVPGIFGEVERAAKVKVEFLDRRGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + I A GLLA C+QHELDHL G+LFID    L+++   K
Sbjct: 115 RKHITAKGLLARCIQHELDHLEGVLFIDVAQSLRKEEEQK 154


>gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
           SI]
 gi|189083075|sp|A5D1C0|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
           SI]
          Length = 155

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   D IL+  ++ + KIN +I+ L+DNM E MY   G+GLAA QIGV  R++V
Sbjct: 1   MAVYKIVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          +   +IT         EGCLSIP    DV R++ I V+ +D   +
Sbjct: 61  VDVGEGLLE------MINPVITSCAGHETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A G LA  LQHE+DHL+GILFI+    +++
Sbjct: 115 PLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRK 149


>gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12]
          Length = 174

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LR+ ++ +      DI  LI +M E +  + G+GLAA Q+ V  RL 
Sbjct: 1   MAVLAIARMGHPVLRQPAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +  +       +          INP +    D+  +  EGCLS+PD R +V R   I   
Sbjct: 61  LYSVPLARSEGEDDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRYKRIWYA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D + Q     A G  A  +QHE+DHL+GIL+   ++ + +    K++++
Sbjct: 121 GFDPHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKELTR 171


>gi|119716828|ref|YP_923793.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537489|gb|ABL82106.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 199

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  +  P++ R  +P+   + ++  L  +M+  MY+ DG+GLAA QIGV   + V 
Sbjct: 22  TARSITRWGTPVMHRAQQPVTTYDDELRALAADMVATMYAADGVGLAACQIGVDLAMFVF 81

Query: 62  DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D +      V  NP+              +EGCLS P    +  R    +V     +
Sbjct: 82  DCPDDSGVHTVGVVCNPQLTLPEGRDRQLDESEEGCLSFPGAHVECARPDQASVTGTGLD 141

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            +      DGLLA CLQHE DH  G +F D LS   R  + K
Sbjct: 142 GEPVSFSGDGLLARCLQHETDHTRGTVFGDRLSTKLRKRLQK 183


>gi|217077056|ref|YP_002334772.1| def peptide deformylase [Thermosipho africanus TCF52B]
 gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B]
          Length = 165

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 100/165 (60%), Gaps = 6/165 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + ++ DPILR+ ++ +E     I  + +++L++MY  DG+GLAA Q+G+  R   +D  
Sbjct: 2   KIRLYGDPILRKKAKIVEDF-EYIQQIKEDLLKIMYLEDGVGLAAPQVGISLRFFAMD-- 58

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ +NP+II  S +  + +EGCLS+P    DV+R  ++ +RY D   + Q  
Sbjct: 59  ---DGSGPLIIVNPEIIEHSQEKEIGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEK 115

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +G  A  +QHE DHL+GILFIDHL    +  ++ ++SK++++R
Sbjct: 116 LFEGYSARIVQHERDHLDGILFIDHLPTSVKRRLSTELSKIMRMR 160


>gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279]
 gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279]
          Length = 194

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P+ ++ DP+L++ + P++   S I  L +NMLE M+   G+GLAA Q+GV  RL 
Sbjct: 1   MAEILPIRLYGDPVLKKKALPVQDF-SGIPQLAENMLETMFEARGVGLAAPQVGVSQRLF 59

Query: 60  VIDLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           V         +               V +NP I   +   S+ +        Y    +R 
Sbjct: 60  VAAEYLDDDEEEGPEADLKTRVKQLYVMVNPVITYRAGRQSILEGCLSLPGLYAEGAQRD 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + V Y D + Q +++ A+G LA  +QHE+DHL+GILF   +S   R    ++  +
Sbjct: 120 LQVRVEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFFQRMSFADRQKFLEEHRE 176


>gi|89052959|ref|YP_508410.1| formylmethionine deformylase [Jannaschia sp. CCS1]
 gi|88862508|gb|ABD53385.1| formylmethionine deformylase [Jannaschia sp. CCS1]
          Length = 164

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V +PD  LR ++  +  +      +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MPIRPFVPYPDKRLRTMAETVGPVTDAHREIWQDMIDTMDAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   +   +   +P+II+ SD+ + Y EG  ++P   A + R A +TV + D    
Sbjct: 61  VDASDDRGQA--IRMADPEIISASDEMNTYPEGSPNLPGVTAKITRPARVTVAFTDHMGL 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                   L AT +QH++DHL G +++DHLSR KR+M+ KK  +
Sbjct: 119 RVRQEFVDLWATSVQHQIDHLAGKVYVDHLSRTKREMVIKKSRR 162


>gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902]
 gi|123743565|sp|Q3AZU8|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902]
          Length = 201

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 2/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +       LR+ ++ I K+N  +  L  +ML  MY+  GIGLAA Q+ V  +L+VIDL
Sbjct: 31  LEIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I   S     Y+EGCLSIP    DV R   I + Y D   + + 
Sbjct: 91  DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGL+A C+QHE+DHLNG+LF+D ++   +  + K++ +
Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTD--QAGLQKELKE 189


>gi|325918418|ref|ZP_08180546.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535380|gb|EGD07248.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 176

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M    G+GLAA QI V  +L+V
Sbjct: 6   MIREIIRMGDKRLLRVAPPVTNLGSAELQALVADMFETMDDARGVGLAAPQIAVDLQLMV 65

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   SD+     EGCLSIP  RA + R   I  R  
Sbjct: 66  FGFEVSERYPDAPTVPRTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRHIRYRGF 125

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 126 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 163


>gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
 gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
          Length = 158

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR++SR + +I   I  L+D+M + MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRKEGDPILRKISRNVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D +        +NP+II    +    +  CLSIP++ A VKR   + V+Y++ N +
Sbjct: 61  VDPHDDSTGLIK--LVNPEIIEEDGEQVGIEG-CLSIPNFNATVKRPEHVKVKYLNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHLNGILF D 
Sbjct: 118 EKIWDAHGFPAEILSHEIDHLNGILFRDK 146


>gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803]
 gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803]
          Length = 201

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 90/151 (59%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D +LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV  +L+VI
Sbjct: 29  APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL        P+V INP+I + S     Y+EGCLSIP    DV R + + V + D   + 
Sbjct: 89  DLDPETASSPPLVLINPEITSASASLETYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 148

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + + ADGL+A C+QHE+DHL G+LF+D ++ 
Sbjct: 149 RTMKADGLMARCIQHEMDHLTGVLFVDRVTD 179


>gi|255527719|ref|ZP_05394575.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296187196|ref|ZP_06855593.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255508594|gb|EET84978.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296048231|gb|EFG87668.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 150

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ SR +E ++  I  ++++M E MY+  +G GLA  Q+G+L RLV
Sbjct: 1   MALRQIRLFGDEILRKKSREVEVVDDKIRQILNDMAETMYNTENGGGLAGPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+         +  +NPKII       V +  CLS P+    +KR A + V+ ++ N 
Sbjct: 61  VMDM-----GGGLIKLVNPKIIEQEGTQEVIEG-CLSSPNTWGKLKRPAKVKVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGSLAKCFCHEIDHLEGILFTDLVT 146


>gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 168

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 2/150 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +P   L +    +      + +L+ +M E MY+  G GLAA Q+GV++RL V
Sbjct: 1   MALLPILRWPHEGLSKRCEEVAPST--LGSLVADMFETMYAAPGRGLAAPQVGVMHRLFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        +P+V INP+I+ +     +  EGCLSIP    DV+RS  + +R+ D    
Sbjct: 59  MDATWKEGPGSPVVMINPEIMAYDGGTDILAEGCLSIPGITIDVERSKSVNMRWQDQAGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
            Q  +  G  A C+QHE DHL G +  DHL
Sbjct: 119 WQERWFSGFEARCIQHEFDHLEGRVTFDHL 148


>gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 186

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L R++RP+   +++ +  L+ +ML+ M+  +G GLAA QIGV  +LV
Sbjct: 1   MTIHRILKMGDPRLLRIARPVTGFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V    +H  R          V +NP I     D     EGCLS+P  R  V R + I   
Sbjct: 61  VFGSGEHNPRYPGRPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWSRIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D          DG  A  +QHE DHL G L+   +   ++
Sbjct: 121 GVDPYGHPIDRSVDGFHARVVQHECDHLVGKLYPMRVRDFRQ 162


>gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P]
 gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P]
          Length = 196

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 71/180 (39%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+VS  I +   D+  LI NM E MY+  G+GLAA QIG   RL +I
Sbjct: 1   MILPIIAYGDPVLRKVSEDIPEDYPDLDKLIHNMRETMYNASGVGLAAPQIGKAIRLFLI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D               +  +    VFIN +II    +  V+ EGCLSIPD R DV R   
Sbjct: 61  DASPFAEDEELSEKDRNVLKTFNKVFINAQIIAEEGEEWVFNEGCLSIPDVREDVSRQPV 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D N +      +GL A   QHE DH+ GILF D LS LK+ +I KK+  + + +
Sbjct: 121 IKIKYQDENFKKHFETLEGLAARVFQHEYDHIEGILFTDKLSTLKKRIIKKKLENISKGK 180


>gi|67459122|ref|YP_246746.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004655|gb|AAY61581.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 183

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ +     +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQTLNIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P+VFINP+I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  NNKSS-PIVFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELE 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D++S+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYVSKLKRDTLLKKMLKHIKL 171


>gi|300934519|ref|ZP_07149775.1| peptide deformylase [Corynebacterium resistens DSM 45100]
          Length = 163

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 7   VIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             F DP+LR V+ PI       S +  L+ +MLE M    G+GLAA Q+GV  R+ V D 
Sbjct: 2   RYFGDPVLRTVADPIAPAQVGESSVRTLVADMLETMDHYGGVGLAANQVGVTKRVFVYDC 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                       INP+     D+     EGCLS+P     V R+  + V  +  + +   
Sbjct: 62  DGDRG-----HIINPEWQRIGDEEQTGPEGCLSVPGIGGTVTRAMRVRVTGLTVDGEPID 116

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                LLA C+QHE DHLNGI+F+ HLS  +R    K++ 
Sbjct: 117 REVTELLARCVQHETDHLNGIMFLKHLSSEERKEAMKEIR 156


>gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 177

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   L  + +PILR+ + PIE+I+  I  L  +M+E M++T+GIGLAA QIG L  + V 
Sbjct: 1   MLLSLAYYGNPILRKKAIPIERIDDSIRQLATDMIETMHATNGIGLAANQIGQLLSIFVT 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                            VFINPKI+ +S +F V+ EGCLSIP   +DV R   I ++ MD
Sbjct: 61  CVPIAQDDGTWIDGKDRVFINPKILAYSQEFQVFSEGCLSIPKLFSDVARPESIKIQAMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +         G  AT   HE DHLNG+LFID L R +R  I   + ++ +
Sbjct: 121 LDGNVFEETMTGYEATNFMHENDHLNGVLFIDRLHRTERKKIEPILQQIKK 171


>gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 7/175 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              +    +P+L   +RP+ ++   ++  LID+M   M   +G+GLAA Q+GV  R+ V 
Sbjct: 33  VLRITEIGEPVLHTPARPVTELGTPELARLIDDMFTTMDVAEGVGLAAPQVGVDLRVFVY 92

Query: 62  DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           DL D A  ++    +NP++      D  V  EGCLS+P   A ++R    T+R +D    
Sbjct: 93  DLTDDAGDRHVGAVVNPELELDLDADPEVEDEGCLSVPGAYAPLERPGGATIRGVDQLGG 152

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-----RDMITKKMSKLVQLRD 170
              + A G LA C  HE  HL+G L+ DHL+  +     R    K+   L Q R+
Sbjct: 153 PVQLEATGYLARCFIHEAQHLDGTLYWDHLTPEQQADALRQRDEKRAEVLAQRRE 207


>gi|328957297|ref|YP_004374683.1| peptide deformylase [Carnobacterium sp. 17-4]
 gi|328673621|gb|AEB29667.1| peptide deformylase [Carnobacterium sp. 17-4]
          Length = 176

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +P+ +L   ++ +E+I  +I+ L+++M + M + DGIG+AA Q+    RL +
Sbjct: 13  MSVLPILTYPNALLTTPTKEVEEITDEIIQLLEDMHDTMIANDGIGIAAPQVSSNLRLAL 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ + +        +    I  S   ++  EGCLS P+    +KR+  I +R+ D N  
Sbjct: 73  VEIDEESGL----FEMINPQIVQSTGETIDVEGCLSFPEVYGTIKRADTIVLRFYDRNGD 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + AD  LA   QHEL+HL+G LF D +
Sbjct: 129 EFEVEADDYLARAFQHELEHLDGKLFTDKI 158


>gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425]
 gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425]
          Length = 188

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/150 (41%), Positives = 92/150 (61%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D +LR+  + I ++N++   L   ML+ MYS DGIGLAA Q+GV  +L+V+D+
Sbjct: 17  LTIHYLGDRVLRQPCKRISQVNNETRELARTMLQTMYSADGIGLAAPQVGVNKQLIVVDI 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ +NP I  FS + S+ QEGCLSIP    DVKR   I V Y D   + Q+
Sbjct: 77  HPDEAANPPLILVNPVIREFSPEVSLGQEGCLSIPGVYLDVKRPEMIEVAYKDEQGRPQV 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +YA GLL+  +QHE+DHL G++F+D +  +
Sbjct: 137 LYASGLLSRAIQHEIDHLGGVMFVDRVENM 166


>gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 179

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 6/171 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--- 62
           +  +PD IL+  ++ I+  +  +   ID M E MY  +G+GLAA QIG+ Y+++VID   
Sbjct: 5   IRTWPDKILKEPTKEIDFFDDRLKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVIDTSI 64

Query: 63  ---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                +        + +    I   +   +  EGCLS P  +  + R   + V   +   
Sbjct: 65  REKKNEEETEPPVKMVLINPKIVEKEGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEKG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +  ++ +   L+  LQHE+DHLNGI FI +LS LKR ++  K  K ++  +
Sbjct: 125 EDVVVESSEFLSIVLQHEIDHLNGIPFISYLSPLKRKLVLDKYLKSLKESE 175


>gi|290962175|ref|YP_003493357.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260651701|emb|CBG74826.1| polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 156

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 72/148 (48%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
               + +   ++  L+++M   MY   G+GLAA Q+G   R+ V D  D    ++    +
Sbjct: 4   PCEEVTEFGPELARLVEDMFATMYDARGVGLAANQVGRALRVFVYDCPDDEDVRHLGHVV 63

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP++++         EGCLS+P   A V+R     V     +     ++  G  A CLQH
Sbjct: 64  NPRLVSAEGIVLRGPEGCLSLPGLEAGVERYDEAAVEGFTVDGDRVRVWGSGFFARCLQH 123

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSK 164
           E DHL G ++ D LS  +R  + +K ++
Sbjct: 124 ECDHLEGRVYADRLSGWRRRRVLRKAAR 151


>gi|310829317|ref|YP_003961674.1| peptide deformylase 1 [Eubacterium limosum KIST612]
 gi|308741051|gb|ADO38711.1| peptide deformylase 1 [Eubacterium limosum KIST612]
          Length = 151

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + +  FPD IL +  RP+E I+   + LI +M E MY   +  GLAA Q+GVL R+V
Sbjct: 1   MAIRQIRKFPDDILHKKCRPVETIDKRTLELIKDMTETMYQLPNCGGLAANQVGVLKRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +  ++      I  +            EGC+S PD    VKR   + V Y     
Sbjct: 61  VIDVGEGLYQLVNPKIIEAEGERIVV------EGCMSSPDVWGKVKRPERVVVEYTTPEG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +     ADGLLA C  HELDHL+GI F D +
Sbjct: 115 EVLQKEADGLLAKCFCHELDHLDGIFFTDKV 145


>gi|254461985|ref|ZP_05075401.1| polypeptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206678574|gb|EDZ43061.1| polypeptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 163

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  ++  +  ++++ M +  G+G+ A QIGV+ RL V
Sbjct: 1   MSVRRCIPWPDKRLRSKAADVSEITDEVCAVWTDLIDTMEAMPGVGMGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   +       NP+I+  S +   + E   ++P   A +KR   +TV++M+    
Sbjct: 61  LDASNERGKVI--RMANPEILHASAELREHDEASPNLPGVSAVIKRPRAVTVKFMNDKGI 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHLNG L+ DHLSR+KR M+ KK  KL
Sbjct: 119 IDRRDFVGLWATSVQHQIDHLNGKLYFDHLSRVKRTMLIKKAQKL 163


>gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 161

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR++SRP+E +   I  L+D+M E MY+ DG+GLAA Q+G L R++V
Sbjct: 1   MAIRNIRIDGDPILRKISRPVEDVTDRIRILLDDMAETMYAADGVGLAAPQVGNLRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +D          +NP+I+    +    +  CLSIPD+ A VKR   + V+Y+D N +
Sbjct: 61  VDPRDGEDSLVK--LVNPEILEMDGEQIGVEG-CLSIPDFNATVKRPEHVKVKYLDENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHLNGILF D 
Sbjct: 118 EKIWDAHGFPAVILCHEIDHLNGILFKDK 146


>gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
 gi|238687734|sp|B0S139|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
          Length = 162

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR +EKI+  I  ++++M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVEKIDDRIKQIVEDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       MV INPKII  S++  +  EGCLS+P     V+R   + V Y D N  
Sbjct: 61  IDMQDEDG---KMVLINPKIIEKSEEKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q +      A C  HELDHL+G+L+ D +     ++  +++ +L   +
Sbjct: 118 TQRVMGTDYKAHCFCHELDHLDGVLYTDKV----LNLSEEEVERLNNEK 162


>gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769848|ref|YP_244610.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993065|ref|YP_001905075.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|25452914|sp|Q8PCN7|DEF1_XANCP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575180|gb|AAY50590.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734825|emb|CAP53035.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 171

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + + ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSDELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   SD+     EGCLSIP  RA + R   I     
Sbjct: 61  FGFEASERYPEAPAVPRTALANVQIEPLSDEMENGWEGCLSIPGLRAVIPRHRVIRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGTPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|84514539|ref|ZP_01001903.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511590|gb|EAQ08043.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 169

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  V +P P+LR  + P+  I  +I  L D M+  M +  G+GLAA Q+GV   L V
Sbjct: 1   MTHRAYVQWPHPVLRTPAAPVAAITDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +F  ++EG  ++P   A + R   +TVR+++ + +
Sbjct: 61  VDA--STMRGQAVRMANPEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            +     GL AT +QH++DHL G +FID +++++RDM+
Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMFIDRMTKVRRDML 156


>gi|257068124|ref|YP_003154379.1| peptide deformylase [Brachybacterium faecium DSM 4810]
 gi|256558942|gb|ACU84789.1| peptide deformylase [Brachybacterium faecium DSM 4810]
          Length = 188

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L + +R + ++  ++  L+ +M E   +  G GLAA Q+G  +RL V
Sbjct: 1   MTVRPITIVGHKALTQRTRRVREVTDELRTLVADMFETNDAASGAGLAAPQVGSRWRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCN 118
               D +      V +NP +  F       +  EGCLS+P       R     V   D +
Sbjct: 61  YSCPDASGTLRRGVVLNPVLERFGGIVLDEETLEGCLSVPGEGFPTARHRGARVTGTDLD 120

Query: 119 AQHQIIYAD-GLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               ++  + G+LA  LQHE+DHL G L++D L+  +R    
Sbjct: 121 GAEVVVEDEGGVLARALQHEVDHLEGSLYLDRLAPARRREAL 162


>gi|170703079|ref|ZP_02893901.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|171322052|ref|ZP_02910926.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|172060971|ref|YP_001808623.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|170132008|gb|EDT00514.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|171092643|gb|EDT37944.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171993488|gb|ACB64407.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 177

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+ + +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 177

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LI++M E M +  G+GLAA QIGV  +LV+
Sbjct: 1   MIHSILKMGDPRLLRVAPPVERFDTPELHALIEDMFETMAAAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      +  NP I   SDD     EGCLS+P  R  V R   I  +  
Sbjct: 61  FGFDRNERYPDAPAVPQTILCNPVITPLSDDMEDGWEGCLSVPGLRGLVPRYRHIRYQGK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D   +     A+G  A  +QHE DHL G L+   +    +
Sbjct: 121 DPYGRDIDREAEGFHARVVQHECDHLIGRLYPSRIQDFSK 160


>gi|221215452|ref|ZP_03588416.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221164636|gb|EED97118.1| peptide deformylase [Burkholderia multivorans CGD1]
          Length = 177

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+++ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805]
 gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805]
          Length = 183

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/151 (41%), Positives = 91/151 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D +LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV  +L+VI
Sbjct: 11  APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 70

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL        P+V INP+II+ S     Y+EGCLSIP    DV R + + V + D   + 
Sbjct: 71  DLDPETASSPPLVLINPEIISASASLDTYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + + ADGL+A C+QHE+DHL G+LF+D ++ 
Sbjct: 131 KTLKADGLMARCIQHEMDHLTGVLFVDRVTD 161


>gi|297544786|ref|YP_003677088.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842561|gb|ADH61077.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 159

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS ++ ++D+M++ MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +         V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDIGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
 gi|238693348|sp|B4S9B9|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
          Length = 186

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D +LRR ++P++ I++    LI NM+E M +  GIGLAA QIG+  RL+++
Sbjct: 1   MILPITIYSDEVLRRKAKPLKGIDTSHEELIGNMIESMRNASGIGLAAPQIGLSMRLLIV 60

Query: 62  DLQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL          PMV INP I+      ++ +EGCLSIPD  ADV R + I ++Y + + 
Sbjct: 61  DLSPVQGYENAEPMVVINPHILAVKGYNAM-EEGCLSIPDIHADVVRPSSIQLKYRNEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ++     L+A  LQHE+DHL+G LF+D L R  R  + K +  +   +
Sbjct: 120 EERVDEFSALMARVLQHEIDHLDGTLFVDKLQRRDRRKVQKSLEDIAAGK 169


>gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5]
          Length = 181

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ + +LR+    I     ++  L+++M + +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVIYGNEVLRKQCEEIAPDYPEVKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIV 60

Query: 62  DLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                 FINP+I  FS++   Y EGCLS P   ADV RS  I +RY+D
Sbjct: 61  DCTPWGEDDPECADYKRAFINPEIYAFSEEKKTYNEGCLSFPGIHADVPRSLAIRMRYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            N         GL A  +QHE DH+ G++F D +S L+R
Sbjct: 121 ENFVEHDEEFHGLKAWVIQHEYDHIEGVVFTDRISPLRR 159


>gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
 gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17]
 gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4]
 gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4]
 gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17]
 gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
          Length = 158

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD +L      +   +  ++NL+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPDEVLETPCERVMNFDKKLVNLLKDMHETMLVADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERAEYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ AD  LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|292670259|ref|ZP_06603685.1| peptide deformylase [Selenomonas noxia ATCC 43541]
 gi|292648211|gb|EFF66183.1| peptide deformylase [Selenomonas noxia ATCC 43541]
          Length = 156

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    +P+L++ + PIE++      ++D+M E MY+ +G+GLAA QIG   RLVV
Sbjct: 1   MAILEIKKAGNPVLKQKAEPIERLTKRHRQMLDDMAETMYAANGVGLAAPQIGKSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D       +      +IT  +   V  EGCLSIP    DV+R+  +TV Y D  ++
Sbjct: 61  IDVEDEHGLLELV----NPVITMREGSVVDSEGCLSIPKVYGDVERAERVTVEYTDRRSR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + ADGLLA C+QHE DHL+G LFID    L+++
Sbjct: 117 RRTLTADGLLARCIQHECDHLDGRLFIDIAINLRKE 152


>gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
 gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
          Length = 167

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + ++ +P+P+L+ +S+ + ++  DI N+I ++++ M  ++   G+AA QIG L R++
Sbjct: 1   MPIREVLTYPNPLLKEISKEVTELTDDIKNIIKDLVDTMDATSHSTGIAAPQIGELVRII 60

Query: 60  VIDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            ID          +    +    I   +     +EGC+S+PDY  +V R+  + V+++D 
Sbjct: 61  AIDPGKNKKCKNHHGKRVLINPEIVKWEGLIQSREGCMSVPDYTGNVNRAEKVVVQFLDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           N Q     A+G  A  LQHE+DHL+GILFID +   + D+  +K  K
Sbjct: 121 NLQPGAFEAEGFEAILLQHEIDHLDGILFIDRIISKRTDLFRRKKYK 167


>gi|256372453|ref|YP_003110277.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009037|gb|ACU54604.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 164

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+    DP+L   +R +E I++ +  LI++M+  M+   G+GLAA Q+GV  RL V
Sbjct: 1   MPILPIRTIGDPVLSHRAREVETIDARLDQLIEDMIVTMHEAPGVGLAAPQVGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +             Y+EGCLS+P Y   ++R   + +RY+  + +
Sbjct: 61  WDIGDGPDVAINPEIVERTGT------WRYEEGCLSVPGYFWPIERPRTVLLRYVTRDGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
              +    LL    QHE DHL+G+L I
Sbjct: 115 VAELEGSDLLGRVFQHETDHLDGVLLI 141


>gi|297626643|ref|YP_003688406.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922408|emb|CBL56980.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 206

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +  + + I+R  +RP+   +  +  LI +M + M + DG+GLAA Q+     L V +
Sbjct: 13  VLRITRWDESIMRSQTRPVTTFDDTLAQLIADMFKTMAAADGVGLAAPQVDSDLALFVFN 72

Query: 63  LQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D   +    V  NP               QEGCLS P     + R  F      D   
Sbjct: 73  CPDIHDKLVYGVMCNPVVTLPEGKDRHLVSAQEGCLSWPGAYQSLARPDFAVCEGQDETG 132

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               +   GLLA CLQHE DHL+G +F D LS+  R  + ++  +L 
Sbjct: 133 APVRVEGTGLLARCLQHETDHLHGTVFGDRLSKRARRRLDQEKEELA 179


>gi|330468108|ref|YP_004405851.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328811079|gb|AEB45251.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 165

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVI 61
            + + I  DP+LR  S PI   ++++ +L+ ++++ +       G+AA QIGV  ++ V 
Sbjct: 1   MRDIRIIGDPVLRTPSEPITSFDAELRSLVTDLMDTLLGKPGRAGVAAPQIGVNAQVFVY 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   H         +    +  SD+     EGCLSIP       R+   T    D + + 
Sbjct: 61  DADGHRGH------MINPTLDLSDELQDDDEGCLSIPGLYFPTPRALHATAHGFDQHGEP 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             I   G LA  LQHE DHL+G L++D L    R    +++ 
Sbjct: 115 LTIAGSGFLARALQHETDHLHGRLYVDTLRGDIRRRALREIR 156


>gi|221198327|ref|ZP_03571373.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221208266|ref|ZP_03581270.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221171914|gb|EEE04357.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221182259|gb|EEE14660.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 177

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+++ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489]
 gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489]
          Length = 196

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 12/159 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+LR+ ++ I + +  +  L++NM E MY+  G+GLAA Q+G+  R+ ++
Sbjct: 1   MILPITAYGDPVLRKKAKDINQDHPKLKELLENMWETMYNASGVGLAAPQVGLPLRIFLV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +  +                FIN KII  + +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSDDEDLSAEEQKALNGFKKAFINAKIIEETGEEWAFNEGCLSIPDIREDVSRKEN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           I + Y+D N +      +GLLA  +QHE DH+ GILF D
Sbjct: 121 IKITYLDENFKEHTEEYNGLLARVIQHEYDHIEGILFTD 159


>gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 270

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 7/169 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDP+LR  ++ I   ++++ +L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 79  LKVVQYPDPVLRARNKRINTFDNNLRSLADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 138

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP +  FS   SVY+EGCLS P   A+V R   + +   D +     
Sbjct: 139 AGVKGEGEEIVLVNPVVYKFSKRLSVYEEGCLSFPGIYANVLRPDTVKIDAQDASGAKIK 198

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS-------RLKRDMITKKMSKL 165
           +    L A   QHE DHL GILF D ++         +   + +K  ++
Sbjct: 199 VKLSELSARVFQHEFDHLQGILFFDRMTMDVVESIHEQLKSLEEKYEEI 247


>gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181]
 gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181]
          Length = 171

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   DP+L   ++PIE +N  ++  +I++M+E M + DG GLAA QIG+  +LV
Sbjct: 1   MAIKDILKMGDPLLLSAAQPIEAVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+II   ++     EGCLS+P  R  V R   I  + 
Sbjct: 61  IFGFDSNERYPDAEEVPFTVLINPEIIPLEEEMEDGWEGCLSVPGLRGVVPRYKSIHYKG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +D   Q      DG  A  +QHE DHL G L+   ++ +
Sbjct: 121 IDQFGQTIDRKVDGFHARVVQHECDHLIGKLYPMRMNDM 159


>gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 171

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359]
 gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359]
          Length = 176

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++ + P++ I   +  L+D+M E MYS +G+GLAA Q+    ++VV
Sbjct: 23  MSALRIVKDGAPVLKKTAAPVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +           +  INP+I+  S++     EGCLS+P    DV R   I V+  +   +
Sbjct: 83  L-----DDGNGLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYTKIKVQAKNRFGK 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             I   +G LA   QHE+DHL G LF +    L++
Sbjct: 138 TVIYEPEGFLARIFQHEMDHLKGHLFTEKAVNLRK 172


>gi|205373320|ref|ZP_03226124.1| peptide deformylase [Bacillus coahuilensis m4-4]
          Length = 161

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  P+ +L +  + +   +  +  L+DNM + M   DG+GLAA QIG    + +
Sbjct: 1   MPVLPIVFHPNEVLEKECKRVTIFDKKLRKLLDNMYDTMIEADGVGLAAPQIGQDISVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP+I+  +   +  +  CLS P+    + R A++ V+  D   +
Sbjct: 61  VDIGDD---SGIIELVNPEILETNGIETDIEG-CLSFPNLYGTLTRPAYVKVKAQDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A+G LA  +QHE+DHL+G+LF    S+++R +  +++ +
Sbjct: 117 AYTIEAEGFLARAIQHEIDHLHGVLFT---SKVERYIEAEELER 157


>gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H]
 gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H]
          Length = 170

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +    +P+L +V++ +      +I +LI +MLE M    G GLAA Q+    R+ 
Sbjct: 1   MPLLKIARMGNPVLHQVAQAVSDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRIF 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V  +  +          P V INP+I    D+  V  EGCLSIP  RADV R A +    
Sbjct: 61  VYHVPTNRVANPEEALLPRVLINPEITPVGDEMMVCSEGCLSIPGLRADVPRHAKVRYSG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N       A G  A  LQHE DHLNGIL+   ++   R    +++ +
Sbjct: 121 LDENGAVLEGEATGFHANVLQHENDHLNGILYPQRITDFARFGYVEEILR 170


>gi|34762409|ref|ZP_00143410.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237742081|ref|ZP_04572562.1| polypeptide deformylase [Fusobacterium sp. 4_1_13]
 gi|294785287|ref|ZP_06750575.1| peptide deformylase [Fusobacterium sp. 3_1_27]
 gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429729|gb|EEO39941.1| polypeptide deformylase [Fusobacterium sp. 4_1_13]
 gi|294487001|gb|EFG34363.1| peptide deformylase [Fusobacterium sp. 3_1_27]
          Length = 174

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKKVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VC----DDGNGVVRKVINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165


>gi|223040084|ref|ZP_03610365.1| peptide deformylase [Campylobacter rectus RM3267]
 gi|222878670|gb|EEF13770.1| peptide deformylase [Campylobacter rectus RM3267]
          Length = 170

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L   S  ++  + ++   +D+M E M + +GIGLAA+Q G   R++++
Sbjct: 1   MILEILTYPNKKLFVKSLEVKVFDEELHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIV 60

Query: 62  DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L D   ++        I    I   +   +YQEGCLS+P Y  DVKR+ FIT+ Y D  
Sbjct: 61  NLFDEESKEQRKEDLLEIINPKILRKEGEIIYQEGCLSVPGYYEDVKRAEFITLEYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            Q + + A+GLL+  +QHE+DHL+G LFI+ +   KR    K+  K  
Sbjct: 121 GQRRELEAEGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKKQK 168


>gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619]
 gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619]
          Length = 178

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L RV+ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I+  
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPLSTEIEEGWEGCLSVPGLRGVVPRYKHISYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D         ADG  A  +QHE DHL G L+   +    +
Sbjct: 121 GIDPQGNPVNRVADGFHARVVQHECDHLIGRLYPSRIQDFAK 162


>gi|218899020|ref|YP_002447431.1| peptide deformylase [Bacillus cereus G9842]
 gi|228902371|ref|ZP_04066527.1| Peptide deformylase [Bacillus thuringiensis IBL 4222]
 gi|228909692|ref|ZP_04073515.1| Peptide deformylase [Bacillus thuringiensis IBL 200]
 gi|228966817|ref|ZP_04127861.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544444|gb|ACK96838.1| peptide deformylase [Bacillus cereus G9842]
 gi|228792916|gb|EEM40474.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228849981|gb|EEM94812.1| Peptide deformylase [Bacillus thuringiensis IBL 200]
 gi|228857269|gb|EEN01773.1| Peptide deformylase [Bacillus thuringiensis IBL 4222]
          Length = 156

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  +   
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQ--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 58  VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|326389546|ref|ZP_08211113.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994551|gb|EGD52976.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200]
          Length = 159

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +IN  I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYIRKNGDEVLRKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +         V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|161524426|ref|YP_001579438.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189350819|ref|YP_001946447.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160341855|gb|ABX14941.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189334841|dbj|BAG43911.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 177

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+++ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 D    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNDRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307]
 gi|166198524|sp|A5GQU9|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307]
          Length = 201

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 87/149 (58%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +       LR+ ++ I K+N  +  L   ML  MY+  GIGLAA Q+GV  +L+VIDL 
Sbjct: 32  KIHTLGSNELRKPAKRISKVNEQVRELAREMLRSMYAAHGIGLAAPQVGVHQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I+  S     Y+EGCLSIP    +V R + + V+Y D   + Q  
Sbjct: 92  PEEAANPPLVLINPEIVATSGALDTYEEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRR 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153
            ADGL+A C+ HE+DHLNG+LF+D +S  
Sbjct: 152 KADGLMARCILHEMDHLNGVLFVDRVSDE 180


>gi|89070115|ref|ZP_01157445.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044336|gb|EAR50479.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 162

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++P   LR  + P+ +++  +  + D M+E M +  G GLAA Q+G+  RL V+
Sbjct: 1   MSRPFVMWPHKALRTRAAPVAQVDDAVRAIWDEMVEAMEAMPGYGLAAPQLGIGLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R   +   NP+++  S +   ++E   ++P   A +KR   +TVR+++   + 
Sbjct: 61  DA--STARGKAVRLANPELLHASVELREHEEASPNLPGVGAALKRPRAVTVRFLNAAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +     GL AT +QH+LDHL+G ++ D LSR +R+M+ K+  K
Sbjct: 119 EERDFVGLWATSVQHQLDHLDGRMYFDRLSRTRREMLLKRARK 161


>gi|315924512|ref|ZP_07920733.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622216|gb|EFV02176.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 172

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  + DPILR+ +R I +IN  I  L  +MLE MY  DG+GLAA Q+GVL +LVV
Sbjct: 1   MAIRKLRYYDDPILRKRAREITEINDRIKTLAADMLETMYDDDGVGLAAPQVGVLRQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        + P+  INP+I++ S      +  CLS PD    V+R  ++T R+ +   Q
Sbjct: 61  I-----DVGQGPITMINPEIVSQSGSIVDSEG-CLSFPDEAGYVERPEYVTARFTNLEGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD--MITKKMSKLVQL 168
              +    LLA  + HELDHL G +FID    +++   MI ++  +L + 
Sbjct: 115 RCEVKGHMLLARAICHELDHLKGEVFIDKKIPVEKAEVMIAEQEKRLAKE 164


>gi|239917583|ref|YP_002957141.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|281413931|ref|ZP_06245673.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|239838790|gb|ACS30587.1| peptide deformylase [Micrococcus luteus NCTC 2665]
          Length = 191

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+   PDP+LR  + P+    +D+  L+ +M+  M++  G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPVRTVPDPVLRTAASPV-PAGADVRALVADMIATMHAVGGVGLAAPQVGVGLRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP + T         EGCLS+P  R    R A   VR  D +  
Sbjct: 60  FD-----VAGVAGHVVNPVLETAGQALREPGEGCLSVPGLRYHPARDAEAVVRGTDVDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  GLLA CLQHE DHL+GIL++D L 
Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145


>gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1]
 gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1]
          Length = 185

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 73/149 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L      + +    +  LI++M   MY+ +G+GLAA QIGV  R+ V D
Sbjct: 13  VRTMSLLGDPVLHSACAEVTEFGPVLDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +    
Sbjct: 73  CPDDDDVRHVGHIVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFDRAVVEGVTSDGAPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   G  A CLQHE DHL+G ++ D ++
Sbjct: 133 RVEGTGFFARCLQHECDHLDGTVYADRVT 161


>gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 177

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   DP L  V+R +E     +   L+ +M + M + +G GLAA QIG+  ++V
Sbjct: 1   MPIKPVLKMGDPRLLEVARKVENFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVV 60

Query: 60  VID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V +NP +   ++      EGCLS+P  R  V R A I    
Sbjct: 61  IFGVKRNLRYPDAEEVPYTVLVNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYARIRYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D          +G  A  +QHE DHL GIL+   ++  +
Sbjct: 121 SDQYGNRIDRTVEGFHARVVQHECDHLQGILYPMRITDFR 160


>gi|187932490|ref|YP_001886374.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187720643|gb|ACD21864.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
          Length = 149

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + ++ DPILR+ S+ +E ++  I +++++M E MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLYDDPILRKKSKEVEVVDDKIRDILNDMAETMYNTENGAGLAAPQVGMLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  INPKII       V +  CLS P+    +KR   + +  ++ N 
Sbjct: 61  VIDMW-----QGLIKLINPKIIKKEGSQEVIEG-CLSNPNVFGKLKRPYKVIIEALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   +   G LA C  HE+DHL+GILF D ++
Sbjct: 115 EEIQLTGTGDLAKCFCHEIDHLDGILFTDLVT 146


>gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
 gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
          Length = 188

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 87/148 (58%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D  LR+ ++ I K++  I  L   ML+ MYS+ GIGLAA Q+ +  +L+V+D 
Sbjct: 17  LDIHFLGDRALRQPAKRIAKVDDSIRKLAKEMLQTMYSSQGIGLAAPQVAIQKQLIVVDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +      +P++ INPKI  FS +  V +EGCLSIP    DV R   I V + D   + + 
Sbjct: 77  EPDNPANSPLILINPKITVFSKELCVVEEGCLSIPGVYLDVTRPKAIEVSFKDEQGKPRK 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A  LLA  +QHE+DHLNG++F+D + 
Sbjct: 137 IQATELLARVIQHEMDHLNGVMFVDRVD 164


>gi|261367360|ref|ZP_05980243.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
 gi|282570120|gb|EFB75655.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
          Length = 171

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL++V RP+ K +  +  L+D+M E + + +G+GLA  Q+G++ RL +
Sbjct: 1   MALRTIVQDGDPILKKVCRPVTKFDDRLRILLDDMKETLLAANGLGLAGPQVGMMRRLFI 60

Query: 61  IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
              +     + P         FINP+I+  SD+     EGCLS P +   + RS  + V+
Sbjct: 61  CLDERDMPEEVPENYEYKFIEFINPEILELSDEKVELYEGCLSFPGHNGAISRSKHVKVK 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D + +   + AD +LA C+QHE +HL+GI  +D
Sbjct: 121 AQDRHGEWFEMEADDMLARCIQHENNHLDGITIMD 155


>gi|254414456|ref|ZP_05028222.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178686|gb|EDX73684.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
          Length = 177

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M K   +    +PILR++++PI+ + +  I  LI+ +     + +G+G+AA QI    RL
Sbjct: 1   MTKSLEIAQLGNPILRQLAQPIDNVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRL 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++         +A    P   INP+I+  SD      EGCLSIP  R  V R   I V 
Sbjct: 61  FIVASRPNPRYPNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRYQAIEVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y +   + Q       +A  +QHE DHLNGI+F+D +  
Sbjct: 121 YTNQEGKPQRQQLTDFVARIVQHEYDHLNGIVFVDRVES 159


>gi|163785969|ref|ZP_02180417.1| peptide deformylase [Flavobacteriales bacterium ALC-1]
 gi|159877829|gb|EDP71885.1| peptide deformylase [Flavobacteriales bacterium ALC-1]
          Length = 196

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + D +L++ ++ I+K    +  LI+NM E MY   G+GLAA QIG+  RL ++
Sbjct: 1   MILPIVAYGDAVLKKKAKDIDKDYPKLNELIENMYETMYGAYGVGLAAPQIGLPIRLFLV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +                +     FIN +I+    D   + EGCLSIPD R DV R   
Sbjct: 61  DTEPFAEDESFSEEEQEQLKNFKKTFINAQILEEEGDEWAFNEGCLSIPDVREDVFRQPK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D N +  I   DGL+A  +QHE DH+ G+LF D LS  K+ +I  K++ + + +
Sbjct: 121 IKIQYQDENFEIHIEEYDGLIARVIQHEYDHIEGVLFTDKLSSFKKRLIKGKLTNISKGK 180


>gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2]
 gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
 gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
          Length = 179

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A    P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITLLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D   Q      +G  A  +QHE DHL G L+   ++   +
Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 171

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S +     EGCLSIP  RA + R  +I  R +
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSGEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
 gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
          Length = 158

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ + +I   I  L+D+M + MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRKEGDPILRKTSKLVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D          +NP+II    +    +  CLSIP++ A VKR   + V+Y+D    
Sbjct: 61  VDPHDDTTGLVK--LVNPEIIESDGEQIGIEG-CLSIPNFNATVKRPEHLKVKYLDEEGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHL+GILF D 
Sbjct: 118 EKIWDAHGFPAEILSHEIDHLDGILFRDK 146


>gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
          Length = 150

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++ I+++N     LIDNM E MY+ DG+GLAA QIG+L R+ V
Sbjct: 1   MALLKVREIGDPVLRTKAKEIDEVNKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+++          +    I   +  ++ +EGCLSIP    DV R+  I V+ ++   +
Sbjct: 61  VDIREGNKV-----ILINPEIIEKEGKAIMEEGCLSIPGETGDVIRAEKIKVKSLNRKGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                A+G  A  +QHE+DHL+GILF+D + ++
Sbjct: 116 EVTFLAEGFEARAIQHEIDHLDGILFVDKIIKI 148


>gi|229098336|ref|ZP_04229283.1| Peptide deformylase [Bacillus cereus Rock3-29]
 gi|229104429|ref|ZP_04235098.1| Peptide deformylase [Bacillus cereus Rock3-28]
 gi|229117353|ref|ZP_04246731.1| Peptide deformylase [Bacillus cereus Rock1-3]
 gi|228666253|gb|EEL21717.1| Peptide deformylase [Bacillus cereus Rock1-3]
 gi|228679127|gb|EEL33335.1| Peptide deformylase [Bacillus cereus Rock3-28]
 gi|228685234|gb|EEL39165.1| Peptide deformylase [Bacillus cereus Rock3-29]
          Length = 156

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  +   
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLMADGVGLAAPQVGVSLQ--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 58  VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 185

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
            +V +PDPILRR S  +   + ++  ++    ++ Y + GIGL+A Q+ +  R++V +  
Sbjct: 4   KIVKYPDPILRRRSEEVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNAL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    +
Sbjct: 64  YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHL 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               G+ +   QHE DHLNG LFID  +++ +  +  K+++L++
Sbjct: 124 KILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 167


>gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102]
 gi|39930836|sp|Q7U9D4|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102]
          Length = 201

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 2/160 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +      +LR+ +R I K+      L  +ML  MY+  GIGLAA Q+G+  +L+VIDL
Sbjct: 31  LEIHTLGAEVLRQSARRIGKVTEQTRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + 
Sbjct: 91  DLENAATPPLVLINPEISAASASIDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + ADGL+A C+QHE+DHLNG+LF+D ++      + K++ 
Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTDEA--GLQKELK 188


>gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 178

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L R +  +      DI++L+ +M+E M    G+GLAA Q+    R+ 
Sbjct: 1   MTLLKIARMGHPVLLRRADAVTDPTAPDIVHLVADMIETMEDAGGVGLAAPQVHRSCRVF 60

Query: 60  VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V  + D             P V INP +    ++  +  EGCLSIP  R  V R   +  
Sbjct: 61  VYRVPDTRSSGAPDDQPCGPQVLINPHLTPIGEETVLRLEGCLSIPGLRGWVPRHTRVAY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              D   +     A G LA  +QHE DHLNGIL+   ++ L +     +M++
Sbjct: 121 HGYDAQGRQVKGTASGFLANVMQHEYDHLNGILYPMRMNDLAKMGFDTEMAR 172


>gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|238692315|sp|B3ETT4|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 188

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + + ILR+ + PIE + +D+  LI++M   M +  G+GLAA QIG   +L V+
Sbjct: 1   MIYPIVPYGESILRQTAAPIE-LGTDLETLIESMFITMNAAKGLGLAAPQIGKSIQLFVV 59

Query: 62  DLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           D+            +   +       I   +  + Y+EGCLSIP    DV R+  + +++
Sbjct: 60  DVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTITHYEEGCLSIPGIYVDVPRNKRVRIKF 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D N Q Q      + A  +QHE DHL G L ID+L   +R  +  K+  + Q R
Sbjct: 120 FDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHIDYLRADRRLRLKSKLENIKQGR 174


>gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101]
 gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101]
          Length = 187

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 1/161 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    D  LR+ ++ + K++SD+  L+  ML+ MY+ DGIGLAA Q+ V  +++VID 
Sbjct: 17  LEIYYLGDRSLRQSAKRVAKVDSDMRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I  +S+D  ++QEGCLSIP    DV+R + I V Y D N + Q 
Sbjct: 77  EPTNSATPPLVLINPTIKKYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMS 163
           + A  LL+  +QHE+DHL GILF+D + ++L  +    K  
Sbjct: 137 LQAQELLSRAIQHEMDHLQGILFVDRVENKLALNEELAKYK 177


>gi|282889627|ref|ZP_06298167.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500454|gb|EFB42733.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 178

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 6/172 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ PL  + DPILR+    +E+I+S +  L+++M+E + +  GIGLAA Q+     L + 
Sbjct: 1   MQLPLAFYGDPILRKKCARVEQIDSQLKQLVNDMVETLEAHRGIGLAAPQVHHELNLFIT 60

Query: 62  -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                         N  VF+NPKI+ +S++ + Y EGCLSIP+  A V+R   ITV+Y D
Sbjct: 61  KVPIRYKNGKEDSGNLHVFVNPKILAYSEEKNRYTEGCLSIPNVYAPVERPLSITVQYTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSKLVQ 167
            + +  +    GL A C+ HE DH+NG+LFID + +  +R  +   + ++ +
Sbjct: 121 LDGKTCVEDFSGLEARCILHENDHINGVLFIDRIKKGNERKQLDPLLKQIKK 172


>gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
          Length = 142

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E MY+  GIGLAA Q+    +L+V+DL +   +  PMVFINPK+   +++   Y+EGC
Sbjct: 1   MFETMYAAPGIGLAASQVDRHIQLIVMDLSE--SKDEPMVFINPKVTPLTEETQPYEEGC 58

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LS+P     V R + + +  ++   Q   I ADGLLA C+QHE+DHLNG LF+D+LS LK
Sbjct: 59  LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118

Query: 155 RDMITKKMSKLVQLRD 170
           R    +K+ K+V+ R+
Sbjct: 119 RQRAREKVEKIVRQRE 134


>gi|163853348|ref|YP_001641391.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|163664953|gb|ABY32320.1| formylmethionine deformylase [Methylobacterium extorquens PA1]
          Length = 176

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+           +  L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPIRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+VVI LQ          +++P +   S + + + EG +S+P     V+R A + VRY 
Sbjct: 61  ERVVVIRLQPDEPHAV---YVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL   +
Sbjct: 118 DLDGAEHEEKAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKLRAQQ 171


>gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
 gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
 gi|39930996|sp|Q7V5F9|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9313]
 gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 201

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 93/150 (62%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    + +LR+ +R I K++  + +L+ +ML  MY+  GIGLAA Q+G+  +L+V+DL
Sbjct: 31  LQIHTLGNGVLRQSTRRIGKVDESVRDLVRDMLRSMYAAKGIGLAAPQVGIHKQLLVLDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+II+ S     Y+EGCLSIP    +V R + I + + D   + + 
Sbjct: 91  DLETPTTPPVVLINPEIISSSATVETYEEGCLSIPGVYLNVVRPSEIVLSFRDEMGRPRK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + ADGL+A C+QHE+DHL G+LF+D ++  
Sbjct: 151 MKADGLMARCIQHEMDHLEGVLFVDRVTDE 180


>gi|297588336|ref|ZP_06946979.1| peptide deformylase [Finegoldia magna ATCC 53516]
 gi|297573709|gb|EFH92430.1| peptide deformylase [Finegoldia magna ATCC 53516]
          Length = 162

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR ++KI+  I  ++D+M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVKKIDDRIKQIVDDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       MV INPKI+  SD+  +  EGCLS+P     V+R   +TV Y D +  
Sbjct: 61  IDMQDEDG---KMVLINPKIVERSDEKQINVEGCLSVPGKNGYVERPKTVTVEYTDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q   A    A C  HELDHL+G+L+ D +     ++  +++ +L   +
Sbjct: 118 IQRKTATDYKAHCFCHELDHLDGVLYTDKV----LNLSDEEVERLNNEK 162


>gi|83951627|ref|ZP_00960359.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836633|gb|EAP75930.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 165

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P + +PD  LR  +  +  I  +   L D M+ VM +  G+GLAAVQ+G ++RL V+
Sbjct: 1   MPRPCIPWPDKRLRTPAEDVAAITDETCALWDEMIAVMEAMPGVGLAAVQLGEMHRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      +       NP+++  S     ++E   ++P   A + R   +TVR+++   + 
Sbjct: 61  DASSERGQAV--RMANPEVLHASAQLREHEEASPNLPGVSAKISRPRAVTVRFLNQEGEI 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +     GL AT +QH++DHL G ++ D LS++KRDM+ ++  KL
Sbjct: 119 EERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARKL 162


>gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 171

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVSNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGTPIERDAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|157165463|ref|YP_001465989.1| peptide deformylase [Campylobacter concisus 13826]
 gi|112801795|gb|EAT99139.1| peptide deformylase [Campylobacter concisus 13826]
          Length = 172

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 2/159 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L  +S+ +E  +  +  L+D+M E M + +GIGLAA+QIGV  R+ +I
Sbjct: 1   MILEVLSYPNKKLYEISKEVEVFDEKLHKLLDDMYETMIAKEGIGLAAIQIGVAKRIFII 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    I          +   VYQEGCLS+P Y  DVKRS  + +++ D   
Sbjct: 61  NLANEEGVQDKENLIEIINPKFELREGECVYQEGCLSVPGYYEDVKRSEVVAIKFQDRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           + Q +  DGLLA  +QHE DHL+G LFI+ +   KR   
Sbjct: 121 KEQTLKTDGLLAIAIQHENDHLDGHLFIEKIGFNKRKKF 159


>gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101]
 gi|23396559|sp|Q8XJL2|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101]
          Length = 147

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E MY  +G+GLA+ Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLASPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +          I         +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+G LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEGFLARAIQHEYDHLEGVLFIDH 145


>gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273]
 gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272]
 gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272]
 gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273]
          Length = 156

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIDDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A   LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 IFLLEAKDFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|238650243|ref|YP_002916094.1| polypeptide deformylase [Rickettsia peacockii str. Rustic]
 gi|238624341|gb|ACR47047.1| polypeptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 183

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYTPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIARAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  NNKSS-PIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELS 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD++ KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDILLKKMLKHIKL 171


>gi|283456090|ref|YP_003360654.1| peptide deformylase [Bifidobacterium dentium Bd1]
 gi|283102724|gb|ADB09830.1| def Peptide deformylase [Bifidobacterium dentium Bd1]
          Length = 153

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++     
Sbjct: 1   MPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIG 60

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                V                 EGCLS+P      +R+ +  VR +D +    ++   G
Sbjct: 61  YVLNPVLEETSGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHG 114

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++   LQHE DHL+G +++D L + +R    + M    Q
Sbjct: 115 IMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 153


>gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414]
 gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414]
          Length = 177

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 8/167 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62
           P++   DP+LR+ +  +E   +  I  LID++   +   +G+G+AA Q+   YRL ++  
Sbjct: 6   PIIQLGDPVLRQKAAWVENTQDKYIQKLIDDLTVTVAQANGVGIAAPQVAASYRLFIVAS 65

Query: 63  ----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                  +A    P   INP+II  S +     EGCLS+P  R  V R   +T+ Y D N
Sbjct: 66  RPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRGLVPRYKHLTIAYTDRN 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-KMSK 164
            + +       +A   QHE DHL+G++F+D +     DMIT+ +  K
Sbjct: 126 GKFKKQELTDFVARIFQHEYDHLDGVVFVDRVE-NSLDMITEDEYQK 171


>gi|210617214|ref|ZP_03291458.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787]
 gi|210149415|gb|EEA80424.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787]
          Length = 161

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +V + +  +      LI++ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRKIREIGDDVLEKVCKEVTDMTDRTKVLIEDMLDTMYDAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +              +EGCLS+P     V R  ++ V+ ++   +
Sbjct: 61  IDIGEGPIILVNPEILETAGE------QTGEEGCLSLPGKSGTVTRPNYVKVKALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +   +GLLA    HE+DHL+G L+++ + 
Sbjct: 115 EVVYEGEGLLARAFCHEIDHLDGHLYVEKVE 145


>gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311]
 gi|122945537|sp|Q0I7A5|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311]
          Length = 202

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D  LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV  +L+VI
Sbjct: 29  APLDIHTLGDDALRGDARRIGKVDERVRDLARDMLRSMYTASGIGLAAPQVGVHQQLLVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL        P+V INP+I T S     Y+EGCLSIP    DV R   I + + D   + 
Sbjct: 89  DLDFETPSTPPLVLINPEITTCSASVDTYEEGCLSIPGVYLDVVRPTAIQLSFRDEMGRP 148

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDM 157
           + + ADGL+A C+QHE+DHL G+LF+D ++    LK+++
Sbjct: 149 RTMKADGLMARCIQHEMDHLRGVLFVDRVTDAGGLKKEL 187


>gi|171058566|ref|YP_001790915.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170776011|gb|ACB34150.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 178

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+ + +  ++  L+ ++ + M + +G G+AA QIGV   +V
Sbjct: 1   MPVRTILKMGDPRLLRIAQPVRRFDTPELHQLVQDLRDTMAAANGAGIAAPQIGVDLAVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V +NP+I+  SDD     EGCLS+P  R  V R   I    
Sbjct: 61  IFGSAHNPRYPDAPPVPATVLVNPQIVALSDDEEDGWEGCLSVPGLRGVVPRCTRIRYSG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D   Q     ADG  A  +QHE DHL G L+   +    R
Sbjct: 121 FDPVGQLIEREADGFHARVVQHECDHLIGKLYPMRVRDFSR 161


>gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium]
          Length = 180

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  + DP+L  ++  I  I+  ++ L ++M  VMY   G+GLA  QIGV  ++ V D+ D
Sbjct: 12  IRTYGDPVLAAMADEITNIDGKLVTLAEDMFRVMYQAPGLGLAGPQIGVQKQIFVYDVDD 71

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P V INPKI+  S ++   +  CLSIP    ++ R   + V           I 
Sbjct: 72  D-----PQVIINPKIVESSGEWVYDEG-CLSIPGLYVEMLRPKKVLVSGFTLEGDEVQIE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           AD LLA   QHE+DHL G+L  D +   +R++   + +K
Sbjct: 126 ADELLARLFQHEIDHLQGVLMFDRMLPDQRELAIVEYAK 164


>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
 gi|6014952|sp|O83738|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238689341|sp|B2S3Z6|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
 gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 162

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 5/158 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             +P L  VS P+ +++  +   I  M  VM    G+GLAA Q+G   R+ V+D++ H  
Sbjct: 6   LGEPCLTTVSEPVSEVDEQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVEHHVR 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                 FINP+I   S++ S Y+EGCLSIP     V R   ++V+Y+D N +   + ADG
Sbjct: 66  A-----FINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +LA  +QHE DHL+GILF+D +   +RD   ++ + L 
Sbjct: 121 ILARVIQHEYDHLDGILFLDRIDEKRRDDALRRYAALR 158


>gi|257124971|ref|YP_003163085.1| peptide deformylase [Leptotrichia buccalis C-1013-b]
 gi|257048910|gb|ACV38094.1| peptide deformylase [Leptotrichia buccalis C-1013-b]
          Length = 172

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V++  P LR+ S  ++ ++ ++   +D M+ +M   +G+GLAA Q+ +  R  V++  
Sbjct: 2   KIVLYGHPTLRQKSEKVDVVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEH- 60

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                      INP+I+ FSD+    +EGCLSIP     V R A I V+Y++ N +  + 
Sbjct: 61  ----DGVVKKVINPEILEFSDEIVDMEEGCLSIPGVFKKVNRPAKIKVKYLNENGKEVVE 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + + +   QHE DH+ GILF D LS + + ++ KK+  L +
Sbjct: 117 ELEEMWSRAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKR 159


>gi|220928951|ref|YP_002505860.1| peptide deformylase [Clostridium cellulolyticum H10]
 gi|219999279|gb|ACL75880.1| peptide deformylase [Clostridium cellulolyticum H10]
          Length = 159

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR++SRP++ I+  I+ L+++M + MY  DG+GLAA QIG+L R+VV
Sbjct: 1   MAYRQIRKDGDEVLRKISRPVDSIDKKILALLEDMADTMYRADGVGLAAPQIGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  +   II          EGCLSIP     VKR   +T+RY D N +
Sbjct: 61  IDVGDG------LYEMINPIILEQSGEQDGMEGCLSIPGVLGKVKRPMKVTLRYTDRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A    A  + HELDHL+GIL+ D   ++  +   ++M K
Sbjct: 115 SITIEAKEFFARAICHELDHLDGILYKDKAHKMYTEKELEEMQK 158


>gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1]
 gi|39930837|sp|Q7UHZ5|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1]
 gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47]
          Length = 201

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ FP P LR VSRPI ++++ + ++ D ML++MY  DG+GLAA Q+ +  R+ V 
Sbjct: 1   MPLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVA 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +           V +NP+I     + +  +  CLS+P     VKR   + +R  D     
Sbjct: 61  NPTGKRDEGESWVILNPEIDRPKGNDTAQEG-CLSVPGLYGQVKRPKTVRLRGFDLQGNE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                DG +A  +QHE+DHL+GI+F D +       +   + +  
Sbjct: 120 INQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFK 164


>gi|300934596|ref|ZP_07149852.1| polypeptide deformylase [Corynebacterium resistens DSM 45100]
          Length = 222

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 26/176 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+VI  DP+L   ++P+E       ++++  LI++M E M    G+GLAA Q+GV 
Sbjct: 1   MTIMPIVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVD 60

Query: 56  YRLVVIDLQD---------------------HAHRKNPMVFINPKIITFSDDFSVYQEGC 94
            RL V    D                                   I     D  + +EGC
Sbjct: 61  LRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLETSDIPETMPDEEIDEEGC 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           LS+P Y     R+ +  V  +D N Q   +   G  A CLQHE+ HL+G L+ D L
Sbjct: 121 LSVPGYSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTDVL 176


>gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas fluorescens Pf-5]
 gi|68346235|gb|AAY93841.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 179

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      + ++  LID+M + M S  G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + INP I   S       EGCLS+P  R  V+R   I   
Sbjct: 61  VIFGFEHSERYPEAEAVPQTILINPLITPLSPVLEEGWEGCLSVPGLRGAVQRYQHIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D   +  +  A G  A  +QHE DHL G L+   +S   +
Sbjct: 121 GFDPRGEPIVRVASGFHARVVQHECDHLIGRLYPSRISDFSK 162


>gi|289705546|ref|ZP_06501938.1| peptide deformylase [Micrococcus luteus SK58]
 gi|289557775|gb|EFD51074.1| peptide deformylase [Micrococcus luteus SK58]
          Length = 191

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 77/151 (50%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+   PDP+LR  + P+    +D+  L+ +M+  M++  G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPVRTVPDPVLRTAASPV-PAGADVRALVTDMIATMHAVGGVGLAAPQVGVGLRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP + T         EGCLS+P  R    R+A   VR  D +  
Sbjct: 60  FD-----VAGVAGHVVNPVLETAGQALREPGEGCLSVPGLRYHPARAAEAVVRGTDVDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  GLLA CLQHE DHL+GIL++D L 
Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145


>gi|34580422|ref|ZP_00141902.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|229586763|ref|YP_002845264.1| Polypeptide deformylase [Rickettsia africae ESF-5]
 gi|28261807|gb|EAA25311.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|228021813|gb|ACP53521.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 183

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  NNKSS-PIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKKMLKHIKL 171


>gi|302540350|ref|ZP_07292692.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457968|gb|EFL21061.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 185

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 69/145 (47%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +PL +  D  LR     +   ++ +  L++++   MY+  G+GLAA QIGV  R+ V 
Sbjct: 15  TVRPLRLLGDQALRAPCEEVGDFDAALARLVEDLFATMYAAGGVGLAANQIGVGLRVFVY 74

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   R++    +NP++           EGCLS+P   +   R     V  +    + 
Sbjct: 75  DCPDDEDRRHLGHVVNPRLAEADGVTVRGTEGCLSLPGIESGTPRFDRAVVEGVTATGEP 134

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
             +   G  A CLQHE DHL+G LF
Sbjct: 135 VRVEGSGFFARCLQHECDHLDGGLF 159


>gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
 gi|158512462|sp|A0QQP8|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
          Length = 197

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       +  D+  LI +M + M + +G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D      +                ++     D    +EGCLS+P       R+ 
Sbjct: 61  KRLFVYDCAPTRGQTTRRRGVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  V  +D +     +  + L A  LQHE  HL+G L++D L         K + +
Sbjct: 121 WARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRLVGRYARAAKKAVKR 176


>gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
 gi|238058210|sp|B2KD65|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
          Length = 176

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +V + + ILR+  +P++   +   +  ++ +M +   S  G GL+A QIG+ +R+
Sbjct: 1   MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRI 60

Query: 59  VVIDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            +I + +       +K     +   +I         +EGCLS+P    +++R+  I V  
Sbjct: 61  AMIFIPEKTPKGEAQKFKRYVVINPVIVSKKGCVTDEEGCLSLPGLWVEIERAESIVVHC 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++       I+A G LA  LQHE+DHL+G +FIDH     +  I K++ KL + 
Sbjct: 121 LNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKLSKN 174


>gi|153809825|ref|ZP_01962493.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174]
 gi|149834003|gb|EDM89083.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174]
          Length = 156

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++S+P++++   I+ LID+ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRVIRTEEDPVLRKISKPVKEVTPKIITLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S + +  +  CLS+P     V R  ++ V+ MD    
Sbjct: 61  IDVGEG-----PIVLINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKAMDEEMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
             I     LLA    HE+DHL+G ++ D
Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTD 142


>gi|158321369|ref|YP_001513876.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158141568|gb|ABW19880.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 150

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +  DPILR+ S+ +E ++  I  ++++M E MY   +G GLA  QIG+L RLV
Sbjct: 1   MALREIRLMEDPILRKKSKKVEVVDDKIRQILEDMAETMYHTENGGGLAGPQIGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLSIP+    + R A + V  ++   
Sbjct: 61  VIDMGQGLMKLV------NPRIVKEEGTQTVIEGCLSIPNQFGKLARPAKVIVEALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   I A G LA C  HE+DHLNGILF D ++
Sbjct: 115 EEITITATGNLAKCFCHEIDHLNGILFTDLVT 146


>gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1]
          Length = 175

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L+   DP L + + P++   + ++  L+ ++ + M +  G+GLAA QIGV  ++V
Sbjct: 1   MTIRTLLRMGDPRLLQPAEPVDAFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V +NP I    +      EGCLS+P  R  V R + I  + 
Sbjct: 61  IFGFERSERYPDAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHSRIRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D   Q     A+G  A  +QHE DHL G+L+   +    R
Sbjct: 121 ADSQGQTIDRIAEGFHARVVQHECDHLAGVLYPMRVRDFSR 161


>gi|30021955|ref|NP_833586.1| peptide deformylase [Bacillus cereus ATCC 14579]
 gi|206971120|ref|ZP_03232071.1| peptide deformylase [Bacillus cereus AH1134]
 gi|218232337|ref|YP_002368668.1| peptide deformylase [Bacillus cereus B4264]
 gi|228940955|ref|ZP_04103514.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954144|ref|ZP_04116172.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960083|ref|ZP_04121747.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973884|ref|ZP_04134460.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980474|ref|ZP_04140784.1| Peptide deformylase [Bacillus thuringiensis Bt407]
 gi|229047554|ref|ZP_04193144.1| Peptide deformylase [Bacillus cereus AH676]
 gi|229071365|ref|ZP_04204588.1| Peptide deformylase [Bacillus cereus F65185]
 gi|229081122|ref|ZP_04213632.1| Peptide deformylase [Bacillus cereus Rock4-2]
 gi|229111338|ref|ZP_04240891.1| Peptide deformylase [Bacillus cereus Rock1-15]
 gi|229129143|ref|ZP_04258116.1| Peptide deformylase [Bacillus cereus BDRD-Cer4]
 gi|229146438|ref|ZP_04274809.1| Peptide deformylase [Bacillus cereus BDRD-ST24]
 gi|229152066|ref|ZP_04280261.1| Peptide deformylase [Bacillus cereus m1550]
 gi|229180143|ref|ZP_04307487.1| Peptide deformylase [Bacillus cereus 172560W]
 gi|229192036|ref|ZP_04319006.1| Peptide deformylase [Bacillus cereus ATCC 10876]
 gi|296504362|ref|YP_003666062.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|39931054|sp|Q819U0|DEF1_BACCR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|78100858|pdb|1WS0|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus
           Cereus
 gi|78100859|pdb|1WS1|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus
           Cereus
 gi|29897511|gb|AAP10787.1| Polypeptide deformylase [Bacillus cereus ATCC 14579]
 gi|206733892|gb|EDZ51063.1| peptide deformylase [Bacillus cereus AH1134]
 gi|218160294|gb|ACK60286.1| peptide deformylase [Bacillus cereus B4264]
 gi|228591587|gb|EEK49436.1| Peptide deformylase [Bacillus cereus ATCC 10876]
 gi|228603352|gb|EEK60829.1| Peptide deformylase [Bacillus cereus 172560W]
 gi|228631415|gb|EEK88049.1| Peptide deformylase [Bacillus cereus m1550]
 gi|228637071|gb|EEK93530.1| Peptide deformylase [Bacillus cereus BDRD-ST24]
 gi|228654380|gb|EEL10245.1| Peptide deformylase [Bacillus cereus BDRD-Cer4]
 gi|228672114|gb|EEL27405.1| Peptide deformylase [Bacillus cereus Rock1-15]
 gi|228702166|gb|EEL54642.1| Peptide deformylase [Bacillus cereus Rock4-2]
 gi|228711819|gb|EEL63771.1| Peptide deformylase [Bacillus cereus F65185]
 gi|228723801|gb|EEL75156.1| Peptide deformylase [Bacillus cereus AH676]
 gi|228779294|gb|EEM27551.1| Peptide deformylase [Bacillus thuringiensis Bt407]
 gi|228785909|gb|EEM33912.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228799599|gb|EEM46552.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805464|gb|EEM52055.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228818791|gb|EEM64857.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|296325414|gb|ADH08342.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|326941636|gb|AEA17532.1| peptide deformylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 156

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  +   
Sbjct: 1   MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQ--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 58  VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB]
 gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB]
          Length = 204

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P++   +P+L  V++ + +   S++  LI++M + M +  G+GLAA QIG+  ++V
Sbjct: 29  MAARPILRMGEPLLFEVAKAVTEFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMV 88

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP I    D+  +  EGCLS+P  R +V R   I  + 
Sbjct: 89  IFGFEKSERYPDAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHTRIRYQG 148

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D          +G  A  +QHE DHL G L+   +    R
Sbjct: 149 FDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRIRDFSR 189


>gi|254252055|ref|ZP_04945373.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124894664|gb|EAY68544.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 177

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+ P+ + +  ++  ++ +M + M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVAEPVRQFDTPELHEIVADMFDTMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPKI     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|271967210|ref|YP_003341406.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270510385|gb|ACZ88663.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 159

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59
           M  +P+  F DP+LR V+ P+   + ++  L+ ++   M +  G    A  Q+GV  R++
Sbjct: 1   MAVQPIRPFADPVLRTVAEPVTSFDRELRGLVKSLQATMRAGAGRAGLAAPQLGVSLRVL 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +L   A           +    +D      E CLS P     ++RS  +T R  D   
Sbjct: 61  VYELDGRAGHLINPRLEPSERKIVAD------EACLSAPGLWWPLERSYMVTARGRDMFG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           +   + A G+LA  LQHE DHL+G+LFID L   +R+   +
Sbjct: 115 KPVTVRALGMLARVLQHEADHLDGVLFIDRLPEDERERFLQ 155


>gi|255323209|ref|ZP_05364344.1| peptide deformylase [Campylobacter showae RM3277]
 gi|255299732|gb|EET79014.1| peptide deformylase [Campylobacter showae RM3277]
          Length = 170

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L   S  ++  + ++   +D+M E M + +GIGLAA+Q G   R+++I
Sbjct: 1   MILEILTYPNKKLFVKSLEVKAFDENLHKFLDDMYETMIAKNGIGLAAIQTGEAKRILII 60

Query: 62  DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L D   ++        I    I   +   +YQEGCLS+P Y  DVKR+ FIT+ Y D  
Sbjct: 61  NLVDEESKEQRKEDLLEIINPKILRKEGEIIYQEGCLSVPGYYEDVKRAEFITLEYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + + + ADGLL+  +QHE+DHL+G LFI+ +   KR    K+  K   
Sbjct: 121 GERKELEADGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKKQKN 169


>gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS]
 gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS]
          Length = 167

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+P+LR+ ++ +  I+S I  LID+M+E M S DG GLAA Q+GV  RLVV
Sbjct: 1   MAIRRICELPEPVLRKKAKKVPSIDSSIQTLIDDMIETMSSADGAGLAAPQVGVSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+I+       V +  CLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDAKEAT---VLINPEIVKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I   G++A  L+HE +HL+GIL+IDHL   ++
Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESEEK 151


>gi|313672170|ref|YP_004050281.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938926|gb|ADR18118.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 168

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++ +P+P L+ +S  + KI+  + ++I ++ + M      +G+AA QIG L R++
Sbjct: 1   MAIREVLTYPNPKLKEISEEVLKIDDYVRSVITDLKDTMEDAGHSVGIAAPQIGELIRVI 60

Query: 60  VIDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V+D          +    +    I   +  + ++EGC+S+PDY  +V R+  I V+++D 
Sbjct: 61  VVDPSKNPKCKEHHGPNVMINPEIIKWEGLTQFREGCMSVPDYTGNVTRAEKILVQFLDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           N + ++   +G  A  +QHE+DHL+G+LFID +   + D+  +K  K
Sbjct: 121 NGEQKVFETEGFEAILIQHEIDHLDGVLFIDRIISKRTDLFKRKNYK 167


>gi|46446437|ref|YP_007802.1| peptide deformylase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400078|emb|CAF23527.1| putative polypeptide deformylase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 176

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K PL  + D +LR+    I +IN  I  L+ +M+E M + DG GLAA Q+     L + 
Sbjct: 1   MKLPLAYYGDSVLRKKGSQIAEINDTIKQLVQDMIETMEANDGCGLAAPQVHQSLSLFIT 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +      D        VFINPKI+++S +    QE CLSIP  R  V R   +T++  D
Sbjct: 61  CIPQYLENDQVIPGQVRVFINPKILSYSQEVWACQEACLSIPGMRETVSRPLKVTIQATD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N         G  A  + HE DH+NG+L+ID L   ++  I K + ++ +
Sbjct: 121 LNGHTFTEEFAGFDAHVIMHENDHVNGVLYIDRLPSKRKKGIEKFLREIKK 171


>gi|326798672|ref|YP_004316491.1| peptide deformylase [Sphingobacterium sp. 21]
 gi|326549436|gb|ADZ77821.1| Peptide deformylase [Sphingobacterium sp. 21]
          Length = 189

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +    LR+    +     D+ + I N+ + + +  G+GLAA Q+    +L V+
Sbjct: 1   MILPILAYGATNLRKACLTVSPSYPDLNSFIKNLWQTLDNAQGVGLAAPQVNENIQLFVV 60

Query: 62  D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D            +    +      FINPKI+  SD+  + +EGCLSIP     VKR ++
Sbjct: 61  DSRISFSSVNTEDMAQKDYPGIRQAFINPKIVAHSDEMELDEEGCLSIPGISFPVKRFSW 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y+D N Q    Y  G  A  +QHE DH+ G L ID+LS L++ MI KK++K+   R
Sbjct: 121 IKMTYLDENFQLHTDYFYGRTARIIQHEYDHILGKLPIDYLSELQKLMINKKLNKIRNGR 180


>gi|166365029|ref|YP_001657302.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
 gi|166087402|dbj|BAG02110.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
          Length = 180

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 7/177 (3%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +PIL++ +  I+ + ++D  NLID+++  + +  G+G+AA Q+    RL
Sbjct: 1   MTQVLTITQLGNPILQQKAAAIDNLLDADCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++          A    P   INP+I+  S++     EGCLS+P+ R  V R  +I V 
Sbjct: 61  FIVASHPNPRYPDAPMMPPTAVINPRILRVSEEMVKGWEGCLSVPNLRGFVPRHQWIEVA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Y D N +         +A   QHE DHL GILF+D L+        ++  K+  + +
Sbjct: 121 YCDRNGREIRQVFRDFVARIFQHEYDHLEGILFLDRLASPADLYSEEEYQKISNIAE 177


>gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
 gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
          Length = 183

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L   + P+       +  L++++ E M    G GLAA QIG   ++V
Sbjct: 1   MSIRTVIKMGDPRLLLSAEPVTAFGTPQLTRLVEDLWETMKVHSGAGLAAPQIGENLQVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V            A    P V INP +           EGCLS+P  R  V R A +  +
Sbjct: 61  VFGTGEPNPRYPDAGIVPPTVLINPIVTPLGASMEDGWEGCLSLPGLRGAVPRYASVRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D   Q      +G  A  +QHE DHL G L+   +  + R
Sbjct: 121 GFDLYGQPIDRTVEGFHARVVQHECDHLWGFLYPMRMKDMSR 162


>gi|226312666|ref|YP_002772560.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226095614|dbj|BAH44056.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 175

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M ++ +V   DPILR  S+ ++ I   +  ++D+M++ +Y+     GL+A+QIG+  RLV
Sbjct: 1   MAERMIVRLGDPILRETSKRVQSITPQVEKILDDMVQTIYAAKGRAGLSAIQIGIPKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D           V +               E CLSIP     V+R+ ++ V+ ++   
Sbjct: 61  VMDCGSGLIELINPVLMEKSGEQVGQ------EACLSIPGVFGIVRRANYVKVQTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170
           + + I A+  LA C+QHE+DHL GILFIDH   L      KK+++  L +++D
Sbjct: 115 ETKTIEAEDFLARCIQHEMDHLEGILFIDHTEELYSAKTGKKLNRKDLHRIQD 167


>gi|95931365|ref|ZP_01314077.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95132581|gb|EAT14268.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 166

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 98/166 (59%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++++PDP L+ V RP E  ++D   L+ ++++ MY +   +G+AA QIG+  R+ 
Sbjct: 1   MAVREVLVYPDPRLKEVCRPAEVGHADTAALVQDLIDTMYDSGHSVGIAAPQIGICQRVA 60

Query: 60  VIDLQD----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+ +      H    +  +NP II  +    + +  C+S+PDY  +V+R+  I V++ 
Sbjct: 61  VVDVSNSKLGKKHNHGLVTMVNPTIIESTGSKVMREG-CMSVPDYTGNVERAREIVVQFY 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D   Q Q++   G  A  +QHELDHL+G+LF+D +S  K D+  +K
Sbjct: 120 DQEGQDQVMRCKGFEAVAIQHELDHLDGLLFLDRVSNPKADIFKRK 165


>gi|225574496|ref|ZP_03783106.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038283|gb|EEG48529.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM
           10507]
          Length = 174

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L +  RP+E++N     LID+ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 16  MALRQIRVEGDPVLTKKCRPVEEMNDRTRQLIDDMLDTMYEAMGVGLAAPQVGVLKRIVV 75

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I  +       EGCLSIP    +V R  ++     + N +
Sbjct: 76  IDVGEGPL------VMINPKIVETSGEQTGDEGCLSIPGMAGEVTRPNYVKAIAFNENME 129

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    LLA  + HE DHL+GI++  H++
Sbjct: 130 EFEVEGTELLARAICHECDHLDGIMYTAHVN 160


>gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612]
 gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612]
          Length = 146

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ +R I +IN  I+ L  +ML+ MY+ +G+GLAA Q+GVL +L+V
Sbjct: 1   MAIRKMRVNDDPILRKKTREITEINDRIIELQKDMLDTMYAEEGVGLAAPQVGVLKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    IT  +   V +E CLS PD    V+R  F+TV Y D N  
Sbjct: 61  IDIGEGPVT------LINPEITKQEGSVVEEEACLSFPDRSGKVERPEFVTVEYTDLNGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +   GL+A  + HE+DHLNGI+F+D + +
Sbjct: 115 RYEMECQGLMARAVCHEVDHLNGIVFLDRVIK 146


>gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|23396569|sp|Q97G95|DEF2_CLOAB RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|325509889|gb|ADZ21525.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum EA
           2018]
          Length = 150

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLV 59
           M  + + +  D ILR+ SRP+E ++  I  ++D+ML+    + +G  +AA Q+G+L +LV
Sbjct: 1   MALRQIRLSEDEILRKKSRPVEVVDDKIRQILDDMLDTLQNTENGAAIAAPQVGILKQLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI   +   +           I   +      EGCLSIP+    +KR   +TV  ++ N 
Sbjct: 61  VIATGEDIIKLV------NPKIVKKEGEQEVVEGCLSIPNVYGKLKRPKKVTVEALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   +  +G LA C  HE+DHL+GILF D ++
Sbjct: 115 EKITLTGEGFLAKCFCHEIDHLDGILFTDLVT 146


>gi|125973086|ref|YP_001036996.1| peptide deformylase [Clostridium thermocellum ATCC 27405]
 gi|256004589|ref|ZP_05429567.1| peptide deformylase [Clostridium thermocellum DSM 2360]
 gi|281417281|ref|ZP_06248301.1| peptide deformylase [Clostridium thermocellum JW20]
 gi|158513246|sp|A3DCX4|DEF_CLOTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|125713311|gb|ABN51803.1| peptide deformylase [Clostridium thermocellum ATCC 27405]
 gi|255991461|gb|EEU01565.1| peptide deformylase [Clostridium thermocellum DSM 2360]
 gi|281408683|gb|EFB38941.1| peptide deformylase [Clostridium thermocellum JW20]
 gi|316940693|gb|ADU74727.1| peptide deformylase [Clostridium thermocellum DSM 1313]
          Length = 170

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+VS+ ++ I+  I  L+D+M E MY+ +G+GLAA Q+GVL R+VV
Sbjct: 1   MAVRFIREDGDEILRKVSKKVDVIDERIKTLLDDMAETMYAANGVGLAAPQVGVLKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +        +   +  EGCLSIP    +VKR A + V  ++   +
Sbjct: 61  IDVGDGLMELINPEIVE------QEGEQIDIEGCLSIPGVAGEVKRPARVVVEALNREGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +    LLA  L HE+DHL+GILF D + R 
Sbjct: 115 KITVEGKELLAVALCHEIDHLDGILFTDKVIRF 147


>gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T]
 gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 174

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L+   D  L + + P+ +     +  LI+++ + M +  G+GLAA QIGV  ++V
Sbjct: 1   MAVRTLLRMGDARLLQPAAPVGEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      + +NP I+  +++     EGCLS+P  R  V R+  I    
Sbjct: 61  IFGFERSERYPDAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRATRIRYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                +    +A+G  A  +QHE DHL G+L+   +   +R
Sbjct: 121 YTPAGEPIERFAEGFHARVVQHECDHLAGVLYPMRVRDFRR 161


>gi|67924995|ref|ZP_00518380.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
 gi|67853169|gb|EAM48543.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
          Length = 173

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 6/155 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             +    +PILR+ ++ ++ +    +  L+D +L      +G+G+AA Q+   YRL V+ 
Sbjct: 6   LEIAQVGNPILRQQAQLVQDLTDQKLQQLMDTLLTTARDANGVGIAAPQVSQSYRLFVVC 65

Query: 63  LQDHA-----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
              +         +P + INP+II+ +D+     EGCLS+P  R  V R   ITV Y+D 
Sbjct: 66  SHPNPRYPDAPMMDPTIMINPRIISHNDEIVKGWEGCLSVPGVRGLVPRYKVITVEYLDR 125

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + Q       +A   QHELDHLNGILFID + +
Sbjct: 126 YGKLQQQKLKDFVARIFQHELDHLNGILFIDRVDK 160


>gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855]
 gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8]
 gi|123739741|sp|Q2S316|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855]
 gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8]
          Length = 195

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 9/161 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++    LR  + P+++    +  LIDNM+E M++  GIGLAA Q+G   RL V+
Sbjct: 1   MILPIYVYGHEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVV 60

Query: 62  DLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           DL                 PMVFINP+I+  S+D +  +EGCLSIP+ R  V R   I +
Sbjct: 61  DLTPMADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           RY D   + Q + A G+L+  LQHE DHL+G+LF D+LS  
Sbjct: 121 RYRDREFEEQELEAGGMLSRVLQHERDHLDGVLFTDYLSSF 161


>gi|167037732|ref|YP_001665310.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256752269|ref|ZP_05493132.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116147|ref|YP_004186306.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|238687663|sp|B0KA11|DEF_THEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166856566|gb|ABY94974.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256748837|gb|EEU61878.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929238|gb|ADV79923.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 159

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +         V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084]
 gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084]
          Length = 180

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V  PD  LR    PIEKI++ +  L   MLE MY+T+G+GLAA Q+G L +LVVID+ 
Sbjct: 6   EIVTAPDERLRTECAPIEKIDNKVRLLAKRMLEDMYATEGVGLAAPQVGELVQLVVIDVD 65

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +++P V INP+++    D  V  EGCLS P     V R + + V  +D +      
Sbjct: 66  YADGKRSPYVLINPRVVVADGDEVVGSEGCLSFPGITVQVSRPSHVVVEALDLDGDLMRY 125

Query: 125 Y-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              + LLA CLQHE+DHL+GI  +DHLS  +R    +   +  
Sbjct: 126 EARNNLLAVCLQHEIDHLHGITMLDHLSPARRVAAMRDYQEAK 168


>gi|225418638|ref|ZP_03761827.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme
           DSM 15981]
 gi|225041834|gb|EEG52080.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme
           DSM 15981]
          Length = 165

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+  +P++++      LI++M E MY  +G+GLAA Q+G+L +LVV
Sbjct: 3   MAIRQIRTIGDEILRKQCKPVKEMTPRTAELIEDMFETMYEANGVGLAAPQVGILRQLVV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        V INP+I+      +  +  CLS+P     V R   + V+ ++   +
Sbjct: 63  IDVDDGNQ----YVLINPEILETEGSQTGSEG-CLSVPGKSGTVTRPMHVKVKALNEKLE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  DGLLA  + HE+ HL G L++D
Sbjct: 118 PYELEGDGLLARAICHEIAHLRGELYVD 145


>gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 179

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+   +    ++  LID+M E M    G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A    P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITALDDEIEEGWEGCLSVPGLRGMVPRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +D   +      +G  A  +QHE DHL G L+   ++  
Sbjct: 121 GVDPQGKPIDRSVEGFHARVVQHECDHLIGRLYPSRITDF 160


>gi|158336649|ref|YP_001517823.1| peptide deformylase [Acaryochloris marina MBIC11017]
 gi|158306890|gb|ABW28507.1| peptide deformylase [Acaryochloris marina MBIC11017]
          Length = 176

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +++ ++   +P LR+ + P++     +I +LID+++  M  ++G+G+AA Q+G+  ++V+
Sbjct: 4   MQREVLQLGNPKLRQTACPVQNPTDLEIQSLIDDLIGTMEESNGVGIAAPQVGIDLQVVI 63

Query: 61  ID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +         HA   +P+  INP I     +     EGCLS+P  R  V R++ I+V Y 
Sbjct: 64  VASRPTLRYPHAPHMDPIAMINPHITPIGAERVKDWEGCLSVPGIRGLVPRASTISVEYQ 123

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           D N Q Q       +A  +QHE DHL G +FID +   +  +   +  KLV
Sbjct: 124 DRNGQAQTEIFQDFVARIIQHECDHLQGYVFIDRVESTRELITENEYHKLV 174


>gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421]
 gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421]
          Length = 167

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 5/156 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   +  LR+ S P+E I  +I +L+  M   M   DGIGLAA QIG   R+ V  + 
Sbjct: 2   EILYLGEESLRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRIFVTGVN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +         FINP+II  S+    Y+EGCLSIP     V R   +TV+Y + + + + +
Sbjct: 62  NEQRV-----FINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTL 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              GLLA  +QHE DHL+G+LFID +    R+   K
Sbjct: 117 QTTGLLARVIQHENDHLDGVLFIDRIDEKLREEAIK 152


>gi|297158757|gb|ADI08469.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 178

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             + +L R  R + +    ++  LID+M   MY  DG GLAA Q+GV  RL V D  D  
Sbjct: 1   MGEEVLSRPCREVTEFGTPELSALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDDY 60

Query: 68  HRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             ++    INP        S       EGCLS+P     V R+     R  D +    +I
Sbjct: 61  GIRHVGHIINPVLDLPGPGSRRLVDDFEGCLSVPGAAMAVPRTDRAVARGFDKDGDPLVI 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              G  A CLQHE DH+ G  ++D LS+  R    ++M 
Sbjct: 121 EGLGYFARCLQHETDHVVGHTYLDRLSKRDRKAALRQME 159


>gi|39998545|ref|NP_954496.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39985492|gb|AAR36846.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|298507488|gb|ADI86211.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 169

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + ++ +P P+L++V   +  I+  I  LID+++E M      +G+AA QIGV  R+ 
Sbjct: 1   MPAQTILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVC 60

Query: 60  VID----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID         +    ++ +NP+I+  S +  + +             + +        
Sbjct: 61  VIDVSGSRHGKDNNHGLLLMVNPEIVDRSGNAVMREGCMSVPDYTGDVERSTEVRVRFLD 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   + I A G  A  +QHE+DHL+GILF+D +  +K  +  +K  K
Sbjct: 121 GADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKTGLFRRKNYK 169


>gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum]
          Length = 184

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +P+LR++S P+ K      +    +D+M+E M   DG+GLAA Q+ V  +
Sbjct: 1   MALLKIAKMGNPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQ 60

Query: 58  LVVIDLQDHA-----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +V+I+  D            +V INP     S +     EGCLS+ + R  V RS  + +
Sbjct: 61  VVIIESLDDPRSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVTRSRAVKL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +    +  ++  +   A  LQHE+DHL G LF+D +  +
Sbjct: 121 EALGRKGETIVLDWEEFPAVVLQHEIDHLRGHLFVDRMKDM 161


>gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
           14600]
 gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
           14600]
          Length = 160

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPIL++V RP+ K++     LID+MLE MY  +G+GLAA Q+GVL R+VV
Sbjct: 1   MAIREIRIDGDPILKKVCRPVSKLSDRQQELIDDMLETMYEANGVGLAAPQVGVLRRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +                       + +EGCLS+P   A V R   +  R +D N +
Sbjct: 61  IDVGEGPLVMVNPEITEKDGE------QIGEEGCLSVPGKAAIVTRPEHVIARALDRNMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +   GLLA  + HELDHL+G ++ +
Sbjct: 115 EFSVEGTGLLARAICHELDHLDGHMYTE 142


>gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414]
 gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414]
          Length = 187

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 89/148 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ I K++ +I  L   ML+ MYS+DGIGLAA Q+G+  +L+VID 
Sbjct: 17  LTLHYLGDRVLRQDAKRIAKVDDEIRQLAREMLQTMYSSDGIGLAAPQVGIHKQLIVIDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +       P+V INP I   S +  V QEGCLSIP    DVKR   + + Y D   + + 
Sbjct: 77  EPDNPDHPPLVLINPTIKQMSKEVCVAQEGCLSIPKVYLDVKRPEAVEIAYKDEYGRPKT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A  LLA C+QHE+DHL G++F+D + 
Sbjct: 137 LKATDLLARCIQHEMDHLKGVVFVDRVE 164


>gi|134296033|ref|YP_001119768.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134139190|gb|ABO54933.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 177

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  ++ P+ + +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEIAEPVGQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   R
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160


>gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium]
          Length = 175

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++ DP+L+ ++  I  I+  +++L +NML +MY   G+GLA  QIGV  ++ V D+ D
Sbjct: 7   IRVYGDPVLKTLAASITNIDGKLVSLAENMLHIMYEAPGLGLAGPQIGVQKQIFVYDVDD 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P V +NP I+  S ++   +  CLSIP    ++ R   + VR +        + 
Sbjct: 67  D-----PQVILNPTIVESSGEWVYDEG-CLSIPGLFVEMLRPKEVLVRGLTLEGDEIEVE 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           AD LLA   QHE+DHL G+L  D +   +R +   +  K  + 
Sbjct: 121 ADELLARLFQHEIDHLQGVLMFDRMLPDQRKIALNEYQKHEKN 163


>gi|227489313|ref|ZP_03919629.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227540902|ref|ZP_03970951.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090686|gb|EEI25998.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183162|gb|EEI64134.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 180

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 2/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI  DP+L   ++P+E   S    LID+M E MY+ +G+GLAA Q+G+     V 
Sbjct: 1   MIMPIVICGDPVLHTPTQPVETPLSP--KLIDDMFETMYAANGVGLAANQVGLSQSFFVF 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D +         V    ++     D     EGCLS+P       R+++  V   D N   
Sbjct: 59  DCEGVKGVVVNPVLETSEVPETMPDEEEDLEGCLSLPGEFFPTGRASWAKVTGTDENGNP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                +  LA C QHE  HL G ++ D      R    + + 
Sbjct: 119 VEFEGEDFLARCFQHECGHLKGQVYTDVTIGRYRREAKRAIR 160


>gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ]
          Length = 197

 Score =  111 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 13/162 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +  +P P+L++V+ P+ + + D+  L  +ML  MY   GIGLAA QIG   RL V+D
Sbjct: 16  LLQIFTYPAPVLKKVAEPVTEFDDDLRALCKDMLFTMYHAPGIGLAAPQIGKSIRLFVMD 75

Query: 63  LQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +              +H       +     +I+      +Y+EGCLS+P    +VKR+  
Sbjct: 76  IDYDREEVTRADGSSEHVLSNFNPMIFINPVISNKHGEILYEEGCLSVPGIYEEVKRAKT 135

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           ITV Y D   +   I AD LL+ CLQHE DHL GI+F++ LS
Sbjct: 136 ITVDYQDMWGEKHSIDADELLSICLQHENDHLEGIVFLERLS 177


>gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
 gi|158513127|sp|A1T320|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
          Length = 197

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +P+ I  DP+L   + P+       + +D+ +LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   +                +I     D     EGCLS+P       R+ 
Sbjct: 61  KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +     +    L A  LQHE  HL+G L++D L         K + 
Sbjct: 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRLIGRNARSAKKTVK 175


>gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 136

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
           D+M E MY   GIGLAA Q+ V  R+VV+DL +      PMVFINP+I   +D+   YQE
Sbjct: 1   DDMFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSE--PMVFINPEIEKLTDEMDQYQE 58

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           GCLS+P +  +V R   + V+ +D N +   + A+GLLA C+QHE DHLNG LF+D+LS 
Sbjct: 59  GCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSN 118

Query: 153 LKRDMITKKMSKLVQL 168
           LKRD I KK+ K  +L
Sbjct: 119 LKRDRIKKKLEKQHKL 134


>gi|307264799|ref|ZP_07546361.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920057|gb|EFN50269.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 159

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L++ ++P+ +IN  I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYIRKNGDEVLKKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +         V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|207723348|ref|YP_002253747.1| polypeptide deformylase (partial sequence) protein [Ralstonia
           solanacearum MolK2]
 gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein
           [Ralstonia solanacearum MolK2]
          Length = 181

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +P++   D  L RV++ +++    ++  LI++M + M +  G GLAA QIGV  ++V+ 
Sbjct: 6   IRPILKMGDSRLLRVAQSVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 65

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                     A      V INP I   SD+     EGCLS+P  R  V R   +     D
Sbjct: 66  GFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYD 125

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +       A+G  A  +QHE DHL GIL+   +    R
Sbjct: 126 QHGHAIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTR 164


>gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1]
 gi|39930888|sp|Q8DIB4|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1]
          Length = 188

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 92/148 (62%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             L    D +LR+ ++ + K++  I ++   ML+ MYS DGIGLAA Q+G+  +++VID+
Sbjct: 17  LQLHYLGDRVLRQPAKRVSKVDDSIRDIARKMLQTMYSADGIGLAAPQVGINKQILVIDI 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP I  FS++  V QEGCLSIP    +V+R A + V Y D   + Q+
Sbjct: 77  HPDDPEAEPLVMINPVIKDFSEELEVCQEGCLSIPGVYLEVRRPAMVEVSYKDEWGRPQV 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           I A GLLA  +QHE+DHL G++F+D + 
Sbjct: 137 IMAGGLLARAIQHEIDHLTGVMFVDRVE 164


>gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG']
          Length = 177

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 1/164 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ + DP L   S  + +I+ +I +L+  M E++Y   GIG+AA Q+G   R  V D+  
Sbjct: 6   ILSYGDPRLLVKSTEVTRIDQEISDLVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65

Query: 66  HAHRKNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            A   +          I+  +     +EGCLS P     V+R+  I ++ +D   +  ++
Sbjct: 66  RADPGSRTPVTIINPVISAKEGSITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLVL 125

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +GL A  +QHE+DHL G+L  +H++R  +  + K++  + ++
Sbjct: 126 EGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEIRAIEKI 169


>gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2]
 gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2]
          Length = 159

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           + PD +L +V++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V+D  D  
Sbjct: 2   LEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGDEH 61

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                   +    I   +   +  EGCLSIP    DV+R+  +TV+ ++   +   + A 
Sbjct: 62  GLIK----MINPEIVAEEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTAT 117

Query: 128 GLLATCLQHELDHLNGILFID 148
           GLL+   QHE+DHLNG+LF D
Sbjct: 118 GLLSRAFQHEIDHLNGVLFTD 138


>gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425]
 gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425]
          Length = 190

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 6/170 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              +    +P+LR+ ++ + ++    I  LID++L  +   +G+GLAA Q+G  +++ ++
Sbjct: 15  VLDITQLGNPVLRQTAQFVPEVGHPQIQTLIDDLLVTVKQANGVGLAAPQVGASWQIFIV 74

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             + +    +     P   INP+++  +D      EGCLSIP  R  V R   I V Y+D
Sbjct: 75  ASRPNPRYPHAPEMEPTAMINPRLLAHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLD 134

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              + +       +A   QHE DHLNG++F+D L      +  ++  KLV
Sbjct: 135 RRGKTRRQQLHDFVARIFQHEQDHLNGVVFLDRLETTLELVTEQEYQKLV 184


>gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund]
 gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund]
          Length = 150

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  R + +I+  I+ LI++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MALRNIRVDKDAILRKNCREVGEIDERILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II      + Y+  CLS+P  +  V R   +T + ++   +
Sbjct: 61  IDVGEG-----PITLINPEIIESEGSQTDYEG-CLSLPGKQGKVTRPYKVTAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I  +GLLA  + HELDHL+G LFID +   K
Sbjct: 115 QVKIKGEGLLARAICHELDHLDGTLFIDKVIEEK 148


>gi|75762657|ref|ZP_00742499.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489856|gb|EAO53230.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 156

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  +   
Sbjct: 1   MPVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQ--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + D       +  INP I+    +    +  CLS P    +V+R+ +I VR  +   +
Sbjct: 58  VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469]
 gi|255266837|gb|EET60042.1| peptide deformylase [Bryantella formatexigens DSM 14469]
          Length = 162

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +L +  + ++++   I  LID+M + MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNVRIQGDKVLEKKCKEVKEVTPRIRTLIDDMFDTMYEEGGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID             +   +I  +       EGCLS+P     V R  ++ VR  D N Q
Sbjct: 61  IDTTGE-----EPHVLINPVIEETSGEQRGYEGCLSLPGKSGIVTRPNYVRVRAFDENMQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++    LLA  + HE DHL GI++   + 
Sbjct: 116 EYVLEGTELLARAICHECDHLEGIMYTSKVE 146


>gi|300866152|ref|ZP_07110873.1| peptide deformylase [Oscillatoria sp. PCC 6506]
 gi|300335864|emb|CBN56033.1| peptide deformylase [Oscillatoria sp. PCC 6506]
          Length = 177

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +P+LRR ++ IE + +  +  LIDN++    + +G+G+AA Q+   YRL
Sbjct: 1   MAEILQISQLGNPVLRRQAQTIENLEDEQLQKLIDNLIHTAQNANGVGIAAPQVAQSYRL 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++          A    P   INP+II  S+D     EGCLSIP  R  V R   I + 
Sbjct: 61  LIVASRPSTRYPQAPTMEPTAMINPQIIARSNDVVKDWEGCLSIPGIRGLVPRYQAIEIE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y   + +         +A   QHE DHL+G++F+D +   +  M  ++  + +
Sbjct: 121 YTARDGKLHRQELRDFVARIFQHEYDHLDGLVFLDRVENAQELMAEEEYQEQI 173


>gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp.
           HF0500_35F13]
          Length = 194

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 1/153 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P P LRR    + ++++++   I  M E+MY  +GIGLAA Q+ +  R  +++   
Sbjct: 3   ILHYPHPALRRKCSIVRRVDAELRETISEMYELMYEANGIGLAANQVDLPLRFFIVNTAG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +VFINP +++  +     +EGCLSIP     V R   I V+  +   Q     
Sbjct: 63  DRDEGEELVFINP-VLSQPEGRGEEEEGCLSIPAVYGKVMRPTTIHVQAYNLEGQPFSAE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
               LA  +QHE DHL+G+LF D +S   +  +
Sbjct: 122 LSETLARVVQHETDHLDGVLFTDRISHDDKPRV 154


>gi|291458602|ref|ZP_06597992.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419135|gb|EFE92854.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 169

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL +  + I+ +      LI +ML+ MY  +G+GLAA Q+GVL R+ V
Sbjct: 1   MALRSIRELGDPILEKECKEIKNVTERTRELIRDMLDTMYEANGVGLAAPQVGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          ++              EGCLS+P     V R   + V+  D + +
Sbjct: 61  IDIGDEKRYVCINPEVSVLGEELQTGP----EGCLSVPGKEGTVTRPMRVHVKAKDIDFK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GLLA  + HE DHLNG+++   +    RD
Sbjct: 117 DYEFDAEGLLARAVSHENDHLNGVMYTTRVEGELRD 152


>gi|85705032|ref|ZP_01036132.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670354|gb|EAQ25215.1| peptide deformylase [Roseovarius sp. 217]
          Length = 164

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+ +I      L D M+ VM +  G+GLAA Q+G +  L V
Sbjct: 1   MAPRACLRWPDKRLRMAAAPVTEITDATRALWDEMVAVMEAMPGVGLAATQLGEMQALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S     + E    +P   A ++R   +TVR+++ + +
Sbjct: 61  VDA--STARGQAVRMANPEILHASVQLRPHDEASPCLPGVSAMIERPRGVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +     GL AT +QH++DHL G ++ D LS +KRDM+ ++  K+
Sbjct: 119 DEERDFVGLWATSVQHQIDHLQGRMYFDRLSTVKRDMLLRRARKI 163


>gi|91792258|ref|YP_561909.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91714260|gb|ABE54186.1| Peptide deformylase [Shewanella denitrificans OS217]
          Length = 167

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 96/158 (60%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  P+  L+  ++ +  I   + +LID+ML+ +Y   DGIGLAA Q+G    ++
Sbjct: 1   MAVLDILKAPNEKLKVTAKKVSNI-EQVQSLIDDMLDTLYHTEDGIGLAATQVGRNEAII 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+ +   R +P++ INP++I  ++     +  CLS+P Y ADV+R + + V  +D + 
Sbjct: 60  IIDISE--TRDSPLILINPEVIEGTNIEKGQEG-CLSVPGYYADVERFSRVKVTGLDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              II  D  LA  LQHE+DHL G+LFID+LS LK+ M
Sbjct: 117 NEVIIDNDDFLAIVLQHEIDHLKGVLFIDYLSPLKQSM 154


>gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
 gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
          Length = 147

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +          I         +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+  LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145


>gi|134299448|ref|YP_001112944.1| peptide deformylase [Desulfotomaculum reducens MI-1]
 gi|134052148|gb|ABO50119.1| peptide deformylase [Desulfotomaculum reducens MI-1]
          Length = 172

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M ++ +    DP LR+V +P+ +I  +I+ L+++M + +  + +G  LAA Q+G L R+V
Sbjct: 1   MPERMIGKLGDPALRKVCKPVCEITPNILQLLNDMADTLRATPNGAALAAPQVGFLRRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +       +  INP+II  S +    +  CLS+P     VKRS F+ V+ M+   
Sbjct: 61  VIDLGNE-----KIELINPEIIEKSGEQVGSEG-CLSLPGIWGRVKRSKFVKVKAMNREG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  ++   GLLA CLQHE+DHL+GIL+IDH+
Sbjct: 115 EEILVEGKGLLARCLQHEIDHLDGILYIDHV 145


>gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58]
 gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58]
          Length = 186

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  P+LR  ++ I +I  DI +L+ +M E M +  G+GLAA QIG    L V+
Sbjct: 1   MIRRLEYYGSPVLREKAKEITEITEDIRSLVQDMYETMIAHKGVGLAAPQIGKSLSLFVM 60

Query: 62  DLQDHAH------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP + + S+   +  EGCLSIP  R +V R   +TV  M
Sbjct: 61  CVEGETPDGELIFCDFPKVFINPVLSSPSEHLVIAYEGCLSIPGLRGEVFRPDRVTVTAM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167
           + + Q      +G  A  + HE DHL+GIL+ID +            + K+ +
Sbjct: 121 NLDGQKFSETLEGFPARIVMHETDHLHGILYIDRMEEPRDAKKFKVALEKIKR 173


>gi|313207141|ref|YP_004046318.1| peptide deformylase [Riemerella anatipestifer DSM 15868]
 gi|312446457|gb|ADQ82812.1| peptide deformylase [Riemerella anatipestifer DSM 15868]
 gi|315022461|gb|EFT35488.1| peptide deformylase [Riemerella anatipestifer RA-YM]
 gi|325335421|gb|ADZ11695.1| N-formylmethionyl-tRNA deformylase [Riemerella anatipestifer RA-GD]
          Length = 190

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+LR+  + I     ++  LI NM E M    GIGLAA QIG+  RL ++
Sbjct: 1   MILPIRAYGDPVLRKKGQDITPDYPNLKELIQNMFETMEGAHGIGLAAPQIGLDIRLFIV 60

Query: 62  DLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D++               +    VFIN KI+  + +   + EGCLSIP+ R DVKR   I
Sbjct: 61  DVRPLAEDEDYLDIADELKDFRKVFINAKILEETGEEWKFNEGCLSIPEVREDVKRKDTI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           T+ Y D + +        + A  +QHE DH+ GILF D LS
Sbjct: 121 TIEYYDEDFKKHTETYSDIRARVIQHEYDHIEGILFTDKLS 161


>gi|222148494|ref|YP_002549451.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221735480|gb|ACM36443.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 166

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P P+L +  + +   +  +++  D +   M +  G+G+ A  +G L RLV++
Sbjct: 1   MALKILRYPHPLLAKPCQTVTAFDDRLISFADALYNAMRAAPGVGITAAHVGELMRLVIL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              D         ++NP+I++FS +   + EG + +P     V R   IT+RY   +   
Sbjct: 61  ---DLPELGGRRDYVNPEILSFSQNTLDHDEGSVCMPGMTETVTRPRQITLRYQSLDGTV 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +        A C+QHE+D L+G+ +I  LSRLKRD + KK  K
Sbjct: 118 REEELQDFAAICMQHEIDQLDGLFWIQRLSRLKRDRLLKKWQK 160


>gi|188583614|ref|YP_001927059.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179347112|gb|ACB82524.1| formylmethionine deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV++PDP L R + P+      +  L  ++L+ + +   +GL A+ IG   R+VV
Sbjct: 1   MPARPLVLYPDPRLHRAAGPVTASGEGVRALAADVLDTLGAVSAMGLTAIHIGRPERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I LQ          +++P ++  S + + + EG +S+P     V+R A + VRY D +  
Sbjct: 61  IRLQPDEPHAV---YVDPVLVWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDLDGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GL A CLQHE+D L+GI +ID LSRL+R+ + K+ +KL   +
Sbjct: 118 EHEEEAEGLRAACLQHEIDQLDGIFWIDRLSRLRRERVLKRFAKLRTQQ 166


>gi|148266395|ref|YP_001233101.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146399895|gb|ABQ28528.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 168

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 100/168 (59%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + ++++P PIL+++  P+  I+  I  L+ ++L+ M++    +G+AA QIGV  R+ 
Sbjct: 1   MPVQKILLYPHPILKKMCHPVAAIDRSITGLLQDLLDTMHAGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D+    + K        +    IT     ++ +EGC+S+PDY  DV+R+  IT+R+MD
Sbjct: 61  VVDVSASRNGKENNHGLLQMINPEITKRQGAAIMREGCMSVPDYTGDVERATEITIRFMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +  H  I A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 121 GDGIHHEIEASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKSYK 168


>gi|295698622|ref|YP_003603277.1| peptide deformylase [Candidatus Riesia pediculicola USDA]
 gi|291157320|gb|ADD79765.1| peptide deformylase [Candidatus Riesia pediculicola USDA]
          Length = 151

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 88/149 (59%), Gaps = 2/149 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++ +PD  LR+V++P++ I S+I +L+ NM ++MY   GIGLAA Q+ +  R+VVI++
Sbjct: 5   LNILQYPDSRLRKVAKPVKLITSEIKDLVRNMFKIMYEKGGIGLAATQVNIHQRIVVINI 64

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +    +     + +        +E CLS+ +    + RS FI V+    + +  I
Sbjct: 65  SQREKKDELTLINPIILSSH--GVISLEERCLSVSNRAGCILRSKFIEVKTKSLSGKEFI 122

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152
            +A GLL+ C+QHE+DHL+G LFID+L +
Sbjct: 123 FHAKGLLSVCIQHEVDHLDGKLFIDYLRK 151


>gi|315608229|ref|ZP_07883220.1| peptide deformylase [Prevotella buccae ATCC 33574]
 gi|315250099|gb|EFU30097.1| peptide deformylase [Prevotella buccae ATCC 33574]
          Length = 181

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I+  P+LR+V+  I      +  LI +M E + +++G+GLAA QIG   R+ VIDL   +
Sbjct: 2   IYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLDVLS 61

Query: 68  HRKNPMVFINPKIITFS-------DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                        I                +EGCLSIP    +V R   I V+Y D +  
Sbjct: 62  DDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDTDFV 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  +++ +
Sbjct: 122 EHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 170


>gi|167040394|ref|YP_001663379.1| peptide deformylase [Thermoanaerobacter sp. X514]
 gi|300914478|ref|ZP_07131794.1| peptide deformylase [Thermoanaerobacter sp. X561]
 gi|307724286|ref|YP_003904037.1| peptide deformylase [Thermoanaerobacter sp. X513]
 gi|238687587|sp|B0K292|DEF_THEPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166854634|gb|ABY93043.1| peptide deformylase [Thermoanaerobacter sp. X514]
 gi|300889413|gb|EFK84559.1| peptide deformylase [Thermoanaerobacter sp. X561]
 gi|307581347|gb|ADN54746.1| peptide deformylase [Thermoanaerobacter sp. X513]
          Length = 166

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +         V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|84685502|ref|ZP_01013400.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666659|gb|EAQ13131.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 158

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  ++P+E +  ++  + D M   M +  G+GLAAVQ+G++ RL V+D  +   
Sbjct: 2   WPDKRLRTAAQPVEAVTDEVRAIWDEMTLAMDAMPGVGLAAVQLGIMQRLAVVDASEERG 61

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +       NP+++  S     + E   ++P   A + R   +TVR+MD     +     G
Sbjct: 62  KAV--RMANPEVLHESVKLREHDEASPNLPGVWATISRPRAVTVRFMDETGAVREQDFVG 119

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           L AT +QH++DHLNG ++ DHLS+LKRD +  K  K  +
Sbjct: 120 LWATSVQHQIDHLNGKMYFDHLSKLKRDRLIAKARKAKR 158


>gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335]
 gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335]
          Length = 187

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 94/144 (65%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
              D +LR+ ++ + KI++ + +L+  ML+ MYS DGIGLAA Q+GV  +L+VID     
Sbjct: 21  QMGDRVLRQPAKRVAKIDNALRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVIDADPEN 80

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
              + +V +NPKII +SD+ +  QEGCLSIP    DV R A I V + D N + + + AD
Sbjct: 81  EAASALVLVNPKIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKAD 140

Query: 128 GLLATCLQHELDHLNGILFIDHLS 151
            LLA  +QHE+DHLNG+LF+D + 
Sbjct: 141 DLLARVIQHEMDHLNGVLFVDRVE 164


>gi|295109186|emb|CBL23139.1| peptide deformylase [Ruminococcus obeum A2-162]
          Length = 157

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++SRP++++   I+ LID+ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRVIRTEEDPVLRKISRPVKEVTPKIVTLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+I+  S + +  +  CLS+P     V R  ++ V+ MD +  
Sbjct: 61  IDIGEG-----PIILINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKAMDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
             I     LLA    HE+DHL+G ++ D
Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTD 142


>gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera sp. 301]
 gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera sp. 301]
          Length = 182

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P L   + P+EK +  ++ +LI ++ + M + +G G+AA QIG   R+V
Sbjct: 1   MAVKPVLRMGEPCLLLKAAPVEKFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVV 60

Query: 60  VIDLQDHAHRKNPMV----------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +   +     KNP             INP I    DD     EGCLS+P  R  V R   
Sbjct: 61  IFGQKSSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPRYLR 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +     D           G  A  +QHE DHL+G+L+   +  LK
Sbjct: 121 LHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLYPMRIKNLK 165


>gi|157964561|ref|YP_001499385.1| polypeptide deformylase [Rickettsia massiliae MTU5]
 gi|157844337|gb|ABV84838.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 189

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 16  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 75

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 76  NNKSS-PIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 134

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG +F+D+LS+LKRD + KKM K ++L
Sbjct: 135 AEGFLATVIQHEIDYLNGKIFLDYLSKLKRDTLLKKMLKHIKL 177


>gi|152964372|ref|YP_001360156.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151358889|gb|ABS01892.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 200

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+  +  P+L R + P+   + D++ L+ +M   M + DG+GLAA QIGV  R+ V+D
Sbjct: 25  VHPITRYFTPVLHRPTTPVTSFDEDLVQLVADMFASMDAADGVGLAANQIGVDARVFVVD 84

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEG-------CLSIPDYRADVKRSAFITVRYM 115
             D    +     +   +    +  +  +         CLS+P   AD+ R    TV   
Sbjct: 85  CPDDDTERTGENVVAHVVNPVLELPTGRRRRLDLDGEGCLSVPGEYADLARPDKATVTGK 144

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D +     I   GLLA CLQHE DHL+G++++D L   +R  I 
Sbjct: 145 DVHGNPVKIVGTGLLARCLQHESDHLDGVVYVDRLPAEQRAEIL 188


>gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 169

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PD  L      IE+I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREILTYPDRRLAIECEEIEEITDEIRQLAADMAETMYDADGIGLAAPQVGATCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R++   +INP  +   +     +EGCLS+P  R+ V R+  + +   D +   
Sbjct: 61  DVSGPEAREDLRTYINP-RLELLEGKVDTEEGCLSVPALRSKVTRTEKVRLHATDLDGNA 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I ADGLL+ CLQHE+DHL+G LFID +SRLKR +   K+ K  +
Sbjct: 120 VCIDADGLLSICLQHEIDHLDGTLFIDKISRLKRSLYDNKVKKWQK 165


>gi|255262069|ref|ZP_05341411.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255104404|gb|EET47078.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +  V++PD  LR  +  + +I  DI  + D M+E M +  G+GLAAVQIGV  RL V+
Sbjct: 1   MTRSYVMWPDKRLRTAASDVAEITDDIRAIWDEMIEAMDAMPGVGLAAVQIGVPLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   R   +   NP+I+  S +   +QE   ++P   A V R   +TV++MD N + 
Sbjct: 61  DASD--ARGQAIRMANPEILFASAEMRTHQEASPNLPGVSAIVGRPRAVTVQFMDANGEL 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 GL AT +QH++DHL G ++ DH+SR KRDM+ KK +KL
Sbjct: 119 VQRDLVGLWATSVQHQIDHLAGRMYFDHVSRTKRDMLIKKSAKL 162


>gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700308|sp|Q73T03|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 197

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+   +      D+  LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D                    +I     D     EGCLS+P       R++
Sbjct: 61  LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRL 162


>gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 175

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++   D  L  V++P+   ++ + +++++M + M++ +G GLAA QIGV  R+V+
Sbjct: 1   MAIKPVLRMGDARLLEVAKPVTDFSA-LQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVI 59

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +    D      EGCLS+P  R  V R   I  + +
Sbjct: 60  FGVEENSRYPDAESVPYTVLINPVVTPIDDLMEDDWEGCLSVPGLRGRVARYHAIRYQGV 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           D           G  A  +QHE DHL+G+L+   ++ L+
Sbjct: 120 DAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRMTDLR 158


>gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246]
          Length = 184

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P P LR  ++P+  I++D+      M+E+MY ++G+GLAA Q+ + Y+++V++  
Sbjct: 2   KIVRYPHPALRAKAKPVIAIDADVQKAAAQMVELMYRSEGLGLAAPQVTLDYQMIVLNPL 61

Query: 65  DH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V INP I+         +EGCLS P    +V+R   +TV++ +   +   
Sbjct: 62  GEADQPDQEVVAINPVIVEAKGSTINDREGCLSFPGLYQNVRRYKTVTVKFYNLKGELVQ 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             A  L A   QHE+DHL G LFID +  L      K + K +
Sbjct: 122 TTAHDLAARVWQHEIDHLQGTLFIDKMGSLGLSRSQKDLEKFI 164


>gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688]
 gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 169

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 9   FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----D 62
             DP+L + + P+   +  ++  LI +M + M   +G G+AA QIGV  R+V+       
Sbjct: 1   MGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVGKNP 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A +    V +NP +   +DD     EGCLS+P  R  V R   +     D      
Sbjct: 61  RYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTGFDQYGNPI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                G  A  +QHE DHL+GIL+   +  L
Sbjct: 121 DRLVSGFHARVVQHECDHLDGILYPMRIRDL 151


>gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 188

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   D  L RV++P+E  +   +  L+ +M+E M +  G GLAA Q+GV  +LV
Sbjct: 11  MPVHEILKMGDARLLRVAQPVEAFDTPALHALVADMIETMAAAHGAGLAAPQVGVDLQLV 70

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V           A      V  NP I   SD+     EGCLS+P  R  V R A I    
Sbjct: 71  VFGFERNERYPEAPAVPMTVLCNPVITPLSDETVDGWEGCLSVPGLRGVVPRFARIRYTG 130

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D   +     A+G  A  +QHE DHL G L+   ++ L +
Sbjct: 131 FDAQGRPIEREAEGFHARVVQHECDHLIGRLYPTRMNDLTK 171


>gi|160933492|ref|ZP_02080880.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753]
 gi|156867369|gb|EDO60741.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753]
          Length = 162

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D IL +  RP+EK +  +  L+D+M E +   +G+GLAA Q+G+L R+V+
Sbjct: 1   MAIRNIVKEGDGILGKKCRPVEKFDPKLWMLLDDMKETLREANGVGLAAPQVGILRRVVI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D        + +    I  +       EGCLS P     V+R + + V+  +   +
Sbjct: 61  VNIGDEDGD----IELINPEIVEASGEQDGPEGCLSCPGEWGMVRRPSHVVVKAQNRRGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
              I  + L A    HELDHL GILF
Sbjct: 117 FFEITGEELKARAFCHELDHLEGILF 142


>gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977]
 gi|238688918|sp|B1MIN9|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus]
          Length = 197

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+       +  D+  LI NM E M + +G+GLAA QIGV 
Sbjct: 1   MAIVPIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVP 60

Query: 56  YRLVVIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D  +       H       V    +I     D    +EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAG 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D + +   +  + L A  LQHE  HL+G L+ID L
Sbjct: 121 WARVTGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKL 162


>gi|168334698|ref|ZP_02692834.1| peptide deformylase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 160

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+VSRP+ K +  + + +++M E M S  G+GLAA Q+G L R+ +
Sbjct: 1   MAIRSIRVDDDPILRKVSRPVVKFDPLLHSFLNDMEETMRSASGVGLAAPQVGTLKRVFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +              II F D      EGCLS+P     V R   +T++  D    
Sbjct: 61  IDIGEGLVE------FINPIIIFEDGEQTGDEGCLSVPGRYGVVTRPNTVTIKAQDRYGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
           H  I    L A  + HE DHL+G +F+D
Sbjct: 115 HFEITKSELFARAICHENDHLDGKIFVD 142


>gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 200

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   D  L R +RP+ +     ++ L+ +M + M + +G GLAA QIGV  ++V
Sbjct: 22  MAIHDILKMGDERLLRTARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 81

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +                 P V +NP+I     +     EGCLS+P  R  V R + I  R
Sbjct: 82  IFGSEERNPRYPDRPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPRWSRIHYR 141

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D +        +G  A  +QHE DHL G L+   +    R
Sbjct: 142 GFDEHGAPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 183


>gi|291532990|emb|CBL06103.1| peptide deformylase [Megamonas hypermegale ART12/1]
          Length = 168

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D +L++ ++PIE+I+  I  L+D+M E MY  +G+GLAA Q+G   ++VVI
Sbjct: 18  AILDIKKAGDLVLKQQAQPIERIDKTIRTLLDDMAETMYKANGVGLAAPQVGQSIQVVVI 77

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +          +    I   +   +  EGCLS+P+   +V+R+A ++V Y++   + 
Sbjct: 78  DVGEGLLE------LINPTIIRKEGTEIDTEGCLSVPEIYGEVERAAKVSVEYLNRRGRR 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             I A GLLA CLQHE+DHL+G LFID  + L +
Sbjct: 132 HRITATGLLARCLQHEIDHLHGRLFIDIANNLHK 165


>gi|149182344|ref|ZP_01860822.1| peptide deformylase [Bacillus sp. SG-1]
 gi|148849963|gb|EDL64135.1| peptide deformylase [Bacillus sp. SG-1]
          Length = 161

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P+ IL    R + + +  +   +D+M + M + DG+GLAA Q+G    + +
Sbjct: 1   MAILPIVTYPNEILEIECRKVTEFDKKLRKFLDDMYDTMIAADGVGLAAPQVGKDIAVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP+++    +    +  CLS P+   +V R  ++ V + D   +
Sbjct: 61  VDIGDETGT---IEMVNPEVLEVRGEQIDLEG-CLSFPNLYGEVSRPEYVKVTFQDRKGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++ A+G LA  + HE+DHL+G+LF   +
Sbjct: 117 KLLVEAEGFLARAILHEIDHLHGVLFTSKV 146


>gi|126726108|ref|ZP_01741950.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
 gi|126705312|gb|EBA04403.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P + +PD  LR  +  +  I+ +I  + D+M++ M +  G+GLAA QIGV  RL V+
Sbjct: 1   MIRPTIPWPDQCLRSKANTVGDISDEIRAIWDDMIDTMEAMPGVGLAAPQIGVSLRLCVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   +   M      +    D+   ++E   ++P   A + R A +TV Y D   + 
Sbjct: 61  DASDERGQTIRMAD-PDFVGAQGDELRDHEEASPNLPGVSAKITRPAKVTVEYTDDKGER 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +GL AT +QH+LDHLNG ++ D+LS+  RDM+ ++  K
Sbjct: 120 VRKTLEGLWATSVQHQLDHLNGRMYFDNLSKTNRDMLLRRAKK 162


>gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1]
          Length = 178

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D        +ADG  A  +QHE DHL G L+   +    R
Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAR 162


>gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545]
 gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545]
          Length = 210

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 84/147 (57%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +  +P   LR  ++ I   ++++  L D M   MY +DG+GLAA Q+GV YRL+V + 
Sbjct: 37  LEIQKYPSAKLRDENKKIGVFDAELKKLADAMFAKMYESDGVGLAAPQVGVNYRLMVYNE 96

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +   +V +NPKI+ FS +  +++EGCLS P   ADV+R   +T+   + N +   
Sbjct: 97  AGERGKGAEVVMVNPKIVKFSKEKDMFEEGCLSFPAIYADVERPTAVTIEAQNVNGKKFK 156

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
           +  DG  A   QHE DHL+G+LF D +
Sbjct: 157 MTLDGFQARVFQHEYDHLDGVLFHDRM 183


>gi|32266068|ref|NP_860100.1| peptide deformylase [Helicobacter hepaticus ATCC 51449]
 gi|39930847|sp|Q7VIN5|DEF_HELHP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase [Helicobacter hepaticus ATCC
           51449]
          Length = 181

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 3/152 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ +P+ +LR+ S P+E  + ++ N +D+M E +  + G+GLAA+Q+G   R+++I
Sbjct: 9   ATLAILKYPNALLRKKSIPVEIFDDNLHNFLDDMYETLIESKGVGLAAIQVGRAERILII 68

Query: 62  DLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++    D    K  ++ I        ++   ++EGCLS+PD+   +KR   +++ Y D  
Sbjct: 69  NIPREEDKQQYKEDLLEIINPTFLTQEECVEWEEGCLSVPDFYESIKRFDKVSIAYKDRY 128

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              +I+ A G LA  +QHE+DHLNG+LF+D L
Sbjct: 129 GNDRILKAQGFLAVAIQHEIDHLNGVLFVDKL 160


>gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411]
 gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411]
          Length = 168

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLV 59
           M  + +VI+PD  L+ +   I+ IN + + +  ++LE M Y    +G+AA QIG L R++
Sbjct: 1   MPVRDIVIYPDQRLKAICDEIKNINDEALQVAKDLLETMRYYNHTVGIAAPQIGELVRII 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +D   +   +        +    I         +EGCLS+PDY  +V R+  ITV+Y D
Sbjct: 61  AVDASKNKKGQKINHGELIMINPEILDWSSIIKTREGCLSVPDYTGNVNRARKITVKYWD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            + +      +G  A  +QHE+DHL+GILFID +   + D+  +K
Sbjct: 121 LDGKEHQFDTEGFEAVVIQHEIDHLDGILFIDRIISKRTDLFRRK 165


>gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
          Length = 147

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKILVEDMIETMYENNGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +          I         +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+  LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145


>gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63]
          Length = 158

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D +L +  RP+ K +  + +LID+M+E ++  +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVKEGDSVLTKKCRPVVKFDDRLADLIDDMIETLHKAEGVGLAAPQVGILRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  +NPKII +S      +  CLSIP       R  ++ V+  D +  
Sbjct: 61  IDVGEG-----PIELVNPKIIAYSGKQETLEG-CLSIPGKWGYTVRPDYVKVKAQDRHGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +I    LLA    HELDHL GILF    +R+
Sbjct: 115 EFVIDGKDLLAKAFCHELDHLEGILFTQVATRM 147


>gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
 gi|238058219|sp|B5YF46|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
          Length = 153

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 6/148 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +    DPIL+  ++ +EKI+  +  L  +M+E M   +G+GLAA Q+G   R++V+
Sbjct: 1   MIREIRKVGDPILKTKAKKVEKIDEKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D +D+         I               EGCLS+P     VKR+  I  +  D + + 
Sbjct: 61  DYEDNPIVLINPEIIEMSGEELDY------EGCLSVPGVEVPVKRAERIVFKAQDLDGRT 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149
           +   A GLLA  +QHE+DHL+G+L +D 
Sbjct: 115 KKYRAKGLLARVVQHEVDHLDGMLILDR 142


>gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301]
 gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301]
          Length = 184

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    L     P+L   + P+ +    +I  L+ +M E +    G+GLAA Q+ V  RL 
Sbjct: 1   MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 60

Query: 60  VIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + +                 INP+++    +     EGCLSIP   A V R+A +T+
Sbjct: 61  IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           R MD         A G  A  +QHE DHL+GIL+   L   +     +++++  
Sbjct: 121 RAMDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFNEEVARFR 174


>gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37]
          Length = 165

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  LR  S P+   ++ +  L+++M E MY+  G GLAA Q+GV  RL V
Sbjct: 1   MSLLPILTWPDTGLRAASMPVRAPSA-VARLVEDMFETMYAAPGRGLAAPQVGVRSRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       K P V INP +          +E CLS+P     V R   I +RY D + +
Sbjct: 60  MDATWKDGEKTPTVCINPVVAPLDGPEEPGEEACLSMPGVSVMVTRPTRIRLRYTDLDDK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +   G  A   QHE DHL+G++   HL   +R ++  +   L 
Sbjct: 120 THEVVLTGAAARIAQHETDHLDGVMHFQHLPLAERGVLLAEYEALR 165


>gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1]
 gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1]
          Length = 178

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA QIG+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRFKHIGYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D        +ADG  A  +QHE DHL G L+   +    R
Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFSR 162


>gi|225848346|ref|YP_002728509.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644275|gb|ACN99325.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 168

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M K P++ +PD  L++ S  +     +    ++ +   MY++ G +G+AA Q+    R +
Sbjct: 1   MEKLPILQYPDERLKKKSIEVVDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNNHIRTI 60

Query: 60  VIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++D     H+ N +    + ++   I + +   +++EGC+S+PDY  +VKR  +I V  +
Sbjct: 61  IVDTSKSTHKTNKVSHGLMVLSNPKIIYGEGEIIFREGCMSVPDYTGNVKRFYYIKVEAL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N +      +G  A  +QHE+DHL+G +FI+ +   K D+  +K+ K
Sbjct: 121 DENGKLITFDTEGFEAVVIQHEIDHLDGKVFIEKVVSPK-DIFKRKVYK 168


>gi|326203181|ref|ZP_08193047.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
 gi|325986827|gb|EGD47657.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
          Length = 159

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    + +LR++SRP+E I+  I++L+++M + MY  DG+GLAA QIGVL R+VV
Sbjct: 1   MAYRQIRKDGEEVLRKISRPVENIDKKILSLLEDMADTMYRADGVGLAAPQIGVLKRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  +   +I          EGCLSI      VKR   +T++Y D N +
Sbjct: 61  IDVGDG------LYEMINPVILEQSGEQDGIEGCLSILGVLGKVKRPMNVTLKYTDRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A    A  + HELDHL+GIL+ D   ++  +   ++M K
Sbjct: 115 DITIEASEFFARAICHELDHLDGILYKDKAYKMYTEKEFEEMQK 158


>gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873]
 gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873]
          Length = 149

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  + +++IN  I+ LI++M E MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D +        I+       +      EGCLS+P  +  V R   +  + ++   +
Sbjct: 61  IDVGDGSISLINPEIIS------YEGSQTDYEGCLSLPGKQGKVTRPYKVIAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I  +GLLA  + HELDHL+G+LF+D + + ++
Sbjct: 115 EVEINGEGLLARAICHELDHLDGVLFMDKVIKEEK 149


>gi|225849674|ref|YP_002729908.1| peptide deformylase [Persephonella marina EX-H1]
 gi|225646510|gb|ACO04696.1| peptide deformylase [Persephonella marina EX-H1]
          Length = 169

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L++VS+P+E    D  + ++ +L  M ++  G+G+AA Q+    + +
Sbjct: 1   MEKFEILTYPDERLKKVSKPVEDFGRDFKDFVERLLYTMRNSPAGVGIAAPQVNRHIQTI 60

Query: 60  VIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++D  ++ H+ N      + ++   I   D   V +EGCLS+PD+  +VKR  +I V   
Sbjct: 61  IVDASEYKHKYNKTNHGLMILSNPRIIAYDGEIVIREGCLSVPDFTGNVKRHYWIKVEAE 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +        +G  A  +QHE+DHL G LF+D +   K D+  +K+ K
Sbjct: 121 DIDGNTITFDTEGFEAVVIQHEMDHLKGKLFLDRVVSPK-DIFKRKVYK 168


>gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798920|gb|EDN81340.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
           17982]
          Length = 212

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 32/182 (17%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L RV+ P++ I+S++ +L+ +M+E M++  G+GLAA Q+GV  ++ V
Sbjct: 1   MSILPICITGEPVLHRVADPVDSIDSELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFV 60

Query: 61  IDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQ-------------- 91
                              D    +     ++  ++  + D                   
Sbjct: 61  WRYGGAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120

Query: 92  ---EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              EGCLS+P Y   ++R     +R  D +     + A G LA   QHE DHL G L++D
Sbjct: 121 LESEGCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180

Query: 149 HL 150
            L
Sbjct: 181 RL 182


>gi|153953994|ref|YP_001394759.1| peptide deformylase [Clostridium kluyveri DSM 555]
 gi|219854608|ref|YP_002471730.1| hypothetical protein CKR_1265 [Clostridium kluyveri NBRC 12016]
 gi|146346875|gb|EDK33411.1| Hypothetical protein CKL_1369 [Clostridium kluyveri DSM 555]
 gi|219568332|dbj|BAH06316.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 147

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ + D +LR+ SR I+ IN  I+ L+D+M E +Y   G+GLAA Q+GVL R VV
Sbjct: 1   MALRNVIKYGDELLRKKSRKIDVINDRILTLLDDMEETLYKECGVGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I  +            EGCLSIP+ + +VKR   + V+ ++   +
Sbjct: 61  IDIGEGIFKLINPEIIYSEGSYIDV------EGCLSIPEIQGEVKRPKKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             II  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 EVIIEGEDLLARAFCHEIDHLDGILFVDKMIK 146


>gi|126699364|ref|YP_001088261.1| peptide deformylase 1 [Clostridium difficile 630]
 gi|254975393|ref|ZP_05271865.1| peptide deformylase 1 [Clostridium difficile QCD-66c26]
 gi|255092782|ref|ZP_05322260.1| peptide deformylase 1 [Clostridium difficile CIP 107932]
 gi|255100892|ref|ZP_05329869.1| peptide deformylase 1 [Clostridium difficile QCD-63q42]
 gi|255314522|ref|ZP_05356105.1| peptide deformylase 1 [Clostridium difficile QCD-76w55]
 gi|255517197|ref|ZP_05384873.1| peptide deformylase 1 [Clostridium difficile QCD-97b34]
 gi|255650303|ref|ZP_05397205.1| peptide deformylase 1 [Clostridium difficile QCD-37x79]
 gi|255655776|ref|ZP_05401185.1| peptide deformylase 1 [Clostridium difficile QCD-23m63]
 gi|260683417|ref|YP_003214702.1| peptide deformylase 1 [Clostridium difficile CD196]
 gi|260687013|ref|YP_003218146.1| peptide deformylase 1 [Clostridium difficile R20291]
 gi|296450989|ref|ZP_06892736.1| peptide deformylase 1 [Clostridium difficile NAP08]
 gi|296879045|ref|ZP_06903041.1| peptide deformylase 1 [Clostridium difficile NAP07]
 gi|306520272|ref|ZP_07406619.1| peptide deformylase [Clostridium difficile QCD-32g58]
 gi|115250801|emb|CAJ68625.1| Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1)
           [Clostridium difficile]
 gi|260209580|emb|CBA63212.1| peptide deformylase 1 [Clostridium difficile CD196]
 gi|260213029|emb|CBE04369.1| peptide deformylase 1 [Clostridium difficile R20291]
 gi|296260207|gb|EFH07055.1| peptide deformylase 1 [Clostridium difficile NAP08]
 gi|296429918|gb|EFH15769.1| peptide deformylase 1 [Clostridium difficile NAP07]
          Length = 151

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + +  F D ILR+ S+ +E +++ I  ++++M E MY+  +G GLAA Q+GVL RLV
Sbjct: 1   MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +           I   +   +  EGCLS P+    +KR   +TV+ ++   
Sbjct: 61  VIDLGEGLIKLV------NPEIIKQEGEQIVVEGCLSFPEVWGKLKRPKKVTVQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G +A CL HE+DHLNGI+F D +
Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145


>gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029]
 gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138]
 gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39]
 gi|6225254|sp|Q9Z6J2|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029]
 gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39]
 gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138]
          Length = 186

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +            ++P VFINP +   S+   + +EGCLSIP  R +V R   ITV  M
Sbjct: 61  CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           D N +    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173


>gi|294678912|ref|YP_003579527.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477732|gb|ADE87120.1| peptide deformylase-1 [Rhodobacter capsulatus SB 1003]
          Length = 169

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           M  +P + F D  L   + P+E I  +I  +  +M++ M +  G G  LAA QIGV+ RL
Sbjct: 1   MAVRPFIRFDDKRLHTAAAPVEAITDEIRAIWADMVDTMEAMPGQGVGLAAPQIGVMLRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            V+D  +   +       NP+++  S     + E   ++P   A + R   +TVR+++  
Sbjct: 61  AVVDASEARGQAIL--MANPEVLHASGQMREHDEASPNLPGVWATISRPRAVTVRFLNAA 118

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            + +      L AT +QH++DHLNG  ++DHLS LKR M+
Sbjct: 119 GEIEERDFVHLWATSVQHQIDHLNGKTYVDHLSMLKRKML 158


>gi|255306782|ref|ZP_05350953.1| peptide deformylase 1 [Clostridium difficile ATCC 43255]
          Length = 151

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + +  F D ILR+ S+ +E +++ I  ++++M E MY+  +G GLAA Q+GVL RLV
Sbjct: 1   MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +      I  +            EGCLS P+    +KR   +TV+ ++   
Sbjct: 61  VIDLGEGLIKLVNPEIIEQEGEQIVV------EGCLSFPEVWGKLKRPKKVTVQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G +A CL HE+DHLNGI+F D +
Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145


>gi|226325272|ref|ZP_03800790.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758]
 gi|225206620|gb|EEG88974.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758]
          Length = 156

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +V + + K+      LID+MLE MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRKIREIGDEVLTKVCKEVTKMTPRTTELIDDMLETMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I  S      +EGCLS+P     V R  ++    +D + +
Sbjct: 61  IDIGEGPV------VMINPRIVESSGEQTGEEGCLSVPGKSGIVTRPNYVKAVALDEDMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  +GL+A  + HEL+HL+G L+++ + 
Sbjct: 115 EYEIEGEGLMARAICHELEHLDGHLYVEKVE 145


>gi|303242018|ref|ZP_07328510.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302590436|gb|EFL60192.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 160

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + +  +  D +LR+ S+ +EKI+  I+NL+D+M E MY ++G+GLAA Q+G+L R+V
Sbjct: 1   MALRQIRNYIDDDVLRKKSKVVEKIDEKILNLLDDMAETMYQSNGVGLAAPQVGILKRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   +      I+ +            EGCLS+PD   +VKR+  + V+ +D   
Sbjct: 61  VIDVGEGLIKLINPQIISMEGE------QQDIEGCLSVPDIIGEVKRANKVKVKAIDEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               +   GLLA    HE+DHL+GILFID +
Sbjct: 115 NSIELDGTGLLARAFCHEIDHLDGILFIDKI 145


>gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 201

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   +V   DP+LRR +R +      + +   LI+ M + M    G+GLAA Q+GV  R+
Sbjct: 1   MVLKIVQAGDPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRV 60

Query: 59  VVIDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           VVI+ +                       V INP+++      + + EGCLS+  + A V
Sbjct: 61  VVIEDRPEYQAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R+  + V  +D + Q   + A G  A  LQHELDHL+G L++D + 
Sbjct: 121 PRACAVRVDALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRME 167


>gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 178

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +     +++  LID+M E M    G+GLAA QIG+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D        +ADG  A  +QHE DHL G L+   +    +
Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAK 162


>gi|260906787|ref|ZP_05915109.1| polypeptide deformylase [Brevibacterium linens BL2]
          Length = 168

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + ++ DP+LR    P+   +  +  L  ++++         +AA QIGV  R   
Sbjct: 1   MAERDIRLWGDPVLRSPCAPVTVFDEGLRALAQDLVDTSLPEGRAAVAAPQIGVGVRAFG 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            DL            INP+++    +    +EGCLS+P       R  F  VR +D    
Sbjct: 61  YDLDGRTG-----YVINPEVVEVGGELRDIEEGCLSVPGLFFPTPRYEFARVRGVDAENS 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    + A  LQHE+ HL+G +++  L + +R    K + 
Sbjct: 116 PVEISGTEVFAQMLQHEVAHLDGQVYVQTLPKERRREAMKAIR 158


>gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 179

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   D  L R++RP+ +     ++ L+ +M + M + +G GLAA QIGV  ++V
Sbjct: 1   MAIHDILKMGDERLLRIARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +                 P V +NP+I    D+     EGCLS+P  R  V R + I   
Sbjct: 61  IFGSNERNPRYPDRPLVPPTVLVNPRITPLGDEEEEDWEGCLSVPGLRGVVPRWSRIHYA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D +        +G  A  +QHE DHL G L+   +    R
Sbjct: 121 GFDEHGTPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 162


>gi|251780966|ref|ZP_04823886.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085281|gb|EES51171.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 149

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +  DPILR+ S+ +E I+  I +++++M E MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLCDDPILRKKSKEVEVIDDKIRDILNDMAETMYNTENGAGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +      +    I   +      EGCLS P+    +KR   + V+ ++ N 
Sbjct: 61  VIDMWQGLIK------LINPKIIKKEGIQEVIEGCLSSPNVFGKLKRPYKVIVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           +   +   G LA C  HE+DHL+GILF D
Sbjct: 115 EEIELIGTGDLAKCFCHEIDHLDGILFTD 143


>gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925]
 gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925]
          Length = 159

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR S+ IE I+ +++ LI ++ + +YS DG+GLAA QIGVL R  +
Sbjct: 1   MAIKDIVTTENKLLRRKSKRIESIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +   +  CLS P Y   V R   + V  ++   +
Sbjct: 61  IDLRDGNG---PLILLNPKILKKIGKYEDGEG-CLSYPGYEGIVVRPRKVIVSGINEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                A GL+A  + HE DHL+GIL++D   ++ +  I  +
Sbjct: 117 SAQYEATGLMARAICHETDHLDGILYMDLAKKMYKIPIQDE 157


>gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 178

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L RV+ P+      + ++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSTELEDGWEGCLSVPGLRGVVPRFKHICYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D        +A+G  A  +QHE DHL G L+   +    +
Sbjct: 121 GIDPQGNAIRRFAEGFHARVVQHECDHLIGRLYPSRIQDFTK 162


>gi|255525653|ref|ZP_05392586.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296185413|ref|ZP_06853823.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255510639|gb|EET86946.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296050247|gb|EFG89671.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 151

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR +E I+  I+ L+D+M E MY  DG+GLA  Q+G+L R+VV
Sbjct: 1   MALRNIRKYGDDLLRKKSRKVENIDDRIVTLLDDMAETMYDADGVGLAGPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      I+       +   + +EGCLS+P  +  V+R   + V+ ++   +
Sbjct: 61  IDVGEGILKLINPEIIST------EGSYIDEEGCLSVPGEQGKVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             I+  + LLA  L HE+DHL GILF+D +
Sbjct: 115 EIIVEGEELLARALCHEIDHLEGILFVDKI 144


>gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|39930846|sp|Q7VED2|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 203

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +    +  LR+ ++ I K++ +I +L+  ML  MY+  GIGLAA QIG   +L+VIDL
Sbjct: 31  LEIHTLGNSALRQSAKRISKVDKNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDL 90

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P++ INP+I  FS     Y+EGCLSIP    DV R + I V + D   + + 
Sbjct: 91  DIENSATPPIILINPEITEFSATIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKK 150

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL-VQLRD 170
           I ADGLLA C+QHE+DHLNG+LF+D    +  + + K++ +   + +D
Sbjct: 151 INADGLLARCIQHEMDHLNGVLFVDRA--INEEALNKELKEHGFKKKD 196


>gi|160939813|ref|ZP_02087160.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437247|gb|EDP15012.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 161

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P++ +N   M LI++M E MY  +G GLAA Q+GVL ++V 
Sbjct: 1   MAVRQIRIMGDEILTKKCKPVKAMNDRTMELIEDMFETMYQANGCGLAAPQVGVLKQIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +    IT +D      EGCLS+P     V R  ++ V+ ++ N +
Sbjct: 61  IDVDDGN-----QYVLINPEITATDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALNENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HE  HL G ++++
Sbjct: 116 PYELEGEGLLARAICHECAHLEGQMYVE 143


>gi|291522865|emb|CBK81158.1| peptide deformylase [Coprococcus catus GD/7]
          Length = 159

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    DP+L +V + ++++   +  L+ +MLE MY+ +G+GLAA Q+GVL R+ V
Sbjct: 1   MAIRKLRYEGDPVLGKVCKEVKEMTPHLKELVQDMLETMYAAEGVGLAAPQVGVLRRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VF+NPKI+  + +    +  CLS+P     V+R  ++     D +  
Sbjct: 61  IDVGEG-----PYVFVNPKIVETAGEQIGDEG-CLSVPGKSGTVRRPEYVKTVAFDADMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +   GL A  + HE DHL+G L+++ + 
Sbjct: 115 PIEVEGHGLFARAMCHEFDHLDGHLYLEKVE 145


>gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
            + + +  + +L R    +      ++++  LID+M   MY+ +G+GLA  Q+GV  R+ 
Sbjct: 31  VRRITVTGEEVLHRRGVDVAPQMWGSAELAGLIDDMFVTMYAAEGVGLAGSQVGVDLRVF 90

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V D  D    ++    +NP +     D    V  EGCLS+P   AD+ R+   TVR +D 
Sbjct: 91  VYDCPDDDGVRHVGHVVNPVLDERDPDDAVVVESEGCLSVPGPHADLGRAEHATVRGVDR 150

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +    ++   G  A CLQHE DH  G L++D LS  +R  + KKM+++  
Sbjct: 151 DGNPVVVSGSGYFARCLQHETDHTLGRLYVDRLSARERKRVLKKMNEMAN 200


>gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas]
          Length = 274

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++ M    G+GLAA QIGV  R++V+
Sbjct: 87  DIVKAGDPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAPQIGVPLRIIVL 146

Query: 62  DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +      R  P                 +NPK+   S+  + + EGCLS+  +RA V+R 
Sbjct: 147 EDTKEYIRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLSVDGFRAVVERY 206

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             + V  +    Q   + A G  A  LQHE DHL+G L++D +       I 
Sbjct: 207 LDVEVTGLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKMVPRTFRTIE 258


>gi|291167035|gb|EFE29081.1| peptide deformylase [Filifactor alocis ATCC 35896]
          Length = 147

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 82/148 (55%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +LR+VSRP+ ++   I  LI +M++ MY  DG+GLAA Q+GVL R++V
Sbjct: 1   MAIREVRIDGDEVLRKVSRPVTEMTPRIEQLIGDMIDTMYQYDGVGLAAPQVGVLRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        +      I   +     QEGCLSIP    DVKR   + V   +   +
Sbjct: 61  IDIGEG------PMVFINPEIVEQEGEQCGQEGCLSIPGVYMDVKRPNHVVVTAKNEKME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  D LLA  L HE+DHLNGILF D
Sbjct: 115 DIRVEGDELLARALCHEIDHLNGILFKD 142


>gi|148380578|ref|YP_001255119.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|148290062|emb|CAL84181.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
          Length = 156

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 1   MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + +     +        +EGCLS P Y   V R   + +  ++   +
Sbjct: 61  I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 117 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 151


>gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5]
 gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5]
          Length = 209

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    L     P+L   + P+ +    +I  L+ +M E +    G+GLAA Q+ V  RL 
Sbjct: 26  MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 85

Query: 60  VIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + +                 INP+++    +     EGCLSIP   A V R+A +T+
Sbjct: 86  IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 145

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           R +D         A G  A  +QHE DHL+GIL+   L   +     +++++  
Sbjct: 146 RAIDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFNEEVARFR 199


>gi|298491072|ref|YP_003721249.1| peptide deformylase ['Nostoc azollae' 0708]
 gi|298232990|gb|ADI64126.1| peptide deformylase ['Nostoc azollae' 0708]
          Length = 181

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
           P++   +P+L + +  ++ I +  I  LI +++  +Y  + +G+AA Q+   +RL ++  
Sbjct: 10  PIIQLGNPMLVQKAAWVDNIQDEHIQKLIGDLIFTVYQANSVGIAAPQVAESHRLFIVAS 69

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                   A    P   INPKII +S +     EGCLS+P  R  V R   I + Y D N
Sbjct: 70  RPNTRYPDAPEMKPTAMINPKIIAYSTEVIKGWEGCLSVPGIRGLVPRYQKIEIEYNDRN 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + Q       +A   QHE DHL G +F+D +   +  M   +  
Sbjct: 130 GKIQKQELTDFIARIFQHEYDHLEGKVFLDRVESTEELMTESEYQ 174


>gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly]
 gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1]
 gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly]
 gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1]
          Length = 165

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PD +LR  ++ +E I+ ++ ++I  M+ +M  + G+GLAA Q+G+   + V+   
Sbjct: 2   EIVFYPDDLLRVQTKDVENIDDELRSIIFEMIGLMDKSKGVGLAAPQVGLDLSIFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I + S + SVY+EGCLSIP    D+ R   I +   D N +   I
Sbjct: 60  -KNMMSKPLVFINPVITSKSVELSVYKEGCLSIPGVYYDLSRPKSIVIEAYDENGKFFKI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               +LA  +QHE+DHL G+LFID+     R+ + K   K  +L
Sbjct: 119 EDLDILARIIQHEMDHLKGVLFIDYYEDKLRNKLLKSYLKERRL 162


>gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195]
 gi|123759709|sp|Q3Z8F6|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195]
          Length = 167

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+PILR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RL+V
Sbjct: 1   MAIRRICELPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+I+       V +  CLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDAKEAT---VLINPEIVKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I   G++A  L+HE +HL+GIL+IDHL   ++
Sbjct: 117 AFRIKGTGVVAQLLEHETEHLDGILYIDHLESEEK 151


>gi|166032719|ref|ZP_02235548.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC
           27755]
 gi|166027076|gb|EDR45833.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC
           27755]
          Length = 156

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + + K++     LI++ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 1   MAIREIRVLGDDVLTKHCKEVTKMSIRTKILIEDMLDTMYEAMGVGLAAPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +              +EGCLS+P     V R  ++ VR +D +  
Sbjct: 61  IDVGEGPIILINPEILETSGE------QTGEEGCLSVPGKCGQVTRPNYVKVRALDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA    HE+DHL+G +++D
Sbjct: 115 EFEMEGEGLLARAFCHEIDHLDGKMYVD 142


>gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
 gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
          Length = 257

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P   LR  ++ +   +SD+  L   M ++MY T+G+GLAA Q+GV YR++V +   
Sbjct: 86  IQKYPHASLRNDNKIVGVFDSDLEKLAQAMFKIMYDTEGVGLAAPQVGVNYRMMVYNEAG 145

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R   +V +NPKI+ FS    +++EGCLS P   ADV+R   + V   +   +   + 
Sbjct: 146 EPGRGKEVVLVNPKIVKFSKTKDLFEEGCLSFPKIYADVERPTSVQVEAQNLRGKKFKMT 205

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG  A   QHE DHL+G+LF D ++   R  +  ++  L++
Sbjct: 206 LDGFEARVFQHEYDHLDGVLFHDRMTDEVRGTVQGELDALIE 247


>gi|218960357|ref|YP_001740132.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729014|emb|CAO79925.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans]
          Length = 186

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ ++ D  LR+    I+     +   I++++  MY+ DGIG+AA Q+G  YR++VID
Sbjct: 7   ILPVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVID 66

Query: 63  LQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +            +   +I   +   VY+EGC+S+PD  ADV RS  IT  Y D     
Sbjct: 67  PEQDNKLNKKSPIVMINPVIENKEGEVVYEEGCISLPDIFADVSRSKKITYSYTDRMGNR 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               A+ + A  +QHE DHL GILFIDHL  L R  I  K+ KL 
Sbjct: 127 ITETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKLQ 171


>gi|212639617|ref|YP_002316137.1| peptide deformylase [Anoxybacillus flavithermus WK1]
 gi|212561097|gb|ACJ34152.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1]
          Length = 151

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            +P PIL  V +P+   +  ++ L+++M + M + DG+GLAA QIGV  ++ ++D+ D  
Sbjct: 2   TYPAPILETVCQPVTVFDRKLIKLLNDMYDTMLAADGVGLAAPQIGVDQQIAIVDIGDRH 61

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R    + +   II   +   +  EGCLS P    +VKR  ++ VR  +   +   I A 
Sbjct: 62  GR----IELINPIIVAQNGEQIGPEGCLSFPGLFGEVKRFQYVKVRAQNRRGRPFEIEAT 117

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
           G LA  LQHE+DHL+GILF   +
Sbjct: 118 GFLARALQHEIDHLHGILFTSKV 140


>gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
          Length = 186

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +            ++P VFINP +   S+   + +EGCLSIP  R +V R   ITV  M
Sbjct: 61  CVDRETEDGELIFSESPRVFINPVLSDPSETLIIGKEGCLSIPGLRGEVFRPQKITVTAM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           D N +    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173


>gi|268679608|ref|YP_003304039.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617639|gb|ACZ12004.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
          Length = 182

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 6/173 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             +     PI+R V++P+  I + +I +LID M+     + G+G+AA Q+G    ++++ 
Sbjct: 5   LEIFQLGSPIIRFVAKPVSDILDPEIQSLIDAMIFTCKESKGVGIAAPQVGHSLSIIIMA 64

Query: 63  LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
              +          P   INP+II++S+  +   EGCLS+P  RA V R   I VRY+D 
Sbjct: 65  SYPNKRYPYAPLMEPTALINPEIISYSEASNKEWEGCLSLPGIRALVPRHNTIEVRYVDR 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + Q  +    LA   QHE DHL G +FID +   +  ++ K+  +L+  ++
Sbjct: 125 EGKAQYAHFKDFLARLFQHEYDHLIGKVFIDRVESTQEIIMEKEYQRLMAEKE 177


>gi|224538349|ref|ZP_03678888.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519978|gb|EEF89083.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 171

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP+ I+ +P+LR+    IEK    I  +I+ M +   + DG GLAA QI +  +L V+
Sbjct: 1   MIKPITIYGNPVLRKECVSIEKTYPGIQEVIETMWQTQRNADGCGLAAPQINLPIKLFVV 60

Query: 62  DLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           + +D                        FIN +I  +SD+     EGCLSIPD   +V R
Sbjct: 61  NSRDSYACMSIRERERFFSKDDCGIEETFINAEITGYSDEVWTTGEGCLSIPDLYEEVTR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              IT++Y D     Q+    G  A  +QHE +H  G L+IDHLS  ++ +
Sbjct: 121 PWSITIKYQDKEFNEQVKVYHGYTARIIQHEFEHTEGKLYIDHLSPFRKQL 171


>gi|91205496|ref|YP_537851.1| polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|157827211|ref|YP_001496275.1| polypeptide deformylase [Rickettsia bellii OSU 85-389]
 gi|91069040|gb|ABE04762.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|157802515|gb|ABV79238.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 183

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++    IE ++ +I  +ID ML  M     +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQGELIEVVDDNIRTIIDKMLNTMQIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P++FINP+I  FS D   + E  LS P   A + RS  I + Y+D +   Q + 
Sbjct: 70  NNKSS-PIIFINPEITYFSSDKQTFMERSLSFPGIEAPITRSKAIKINYLDYHGNKQELE 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A   LAT +QHE+D+LNG +F+DHLS+LKRD + KKM K +++
Sbjct: 129 AQDFLATVIQHEVDYLNGKVFLDHLSKLKRDTLLKKMLKYIKM 171


>gi|118475317|ref|YP_892810.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414543|gb|ABK82963.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40]
          Length = 172

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  L   S  + K ++++   +D+M + M + +GIGLAA+Q+G   R+ +I
Sbjct: 1   MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    +      F       VYQEGCLS+P Y  DVKR+  I +++ D   
Sbjct: 61  NLINEDEVQDKNDLLEIINPKFISKDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             + + ADGLL+  +QHE DHL+G LFI+ +   KR
Sbjct: 121 NLKELEADGLLSVAIQHENDHLDGHLFIEKIGFNKR 156


>gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183]
 gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183]
          Length = 204

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+
Sbjct: 19  MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 78

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +            ++P VFINP +   S+   + +EGCLSIP  R +V R   ITV  M
Sbjct: 79  CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 138

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           D N +    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 139 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 191


>gi|317472516|ref|ZP_07931837.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
 gi|316900030|gb|EFV22023.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
          Length = 157

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 5/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ S+ I+++ S  M LI++M + MY   G+GLAA Q+G+L RLVV
Sbjct: 1   MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I      +   P+V INPKI+    +    +  CLS+P   A VKR   +    +D +  
Sbjct: 61  I----DTYEGQPLVLINPKIVEKDGEQIGDEG-CLSLPGKVAVVKRPNHVVCEALDQDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              +  +GLLA  + HELDHL+G+L+ D      RD+  ++
Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156


>gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|32363154|sp|Q88EA7|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440]
          Length = 178

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D        +ADG  A  +QHE DHL G L+   +    +
Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAK 162


>gi|257877734|ref|ZP_05657387.1| formylmethionine deformylase [Enterococcus casseliflavus EC20]
 gi|257811900|gb|EEV40720.1| formylmethionine deformylase [Enterococcus casseliflavus EC20]
          Length = 162

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR ++P++ I  +++ L+D++ E M + DGIG+AA Q+G   ++ ++
Sbjct: 1   MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++++    +     I        D      EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVEEDDRFEMINPEIIASSGESLDV-----EGCLSIPHTFGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167
             + A G LA  +QHE+DHLNG+LF+D L  R+  + + K M +  +
Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEEHEK 162


>gi|209549461|ref|YP_002281378.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535217|gb|ACI55152.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 164

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   +S +  L D++L  M +  G+G+ A  IGV  RL V
Sbjct: 1   MPIRPILRYPHPGLKTVCAPVTVFDSSLAALADDLLATMRAAPGVGITAAHIGVFTRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    ++NP+I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKTDGVRL---YVNPEITWFSKETMSHAEGSVSMPGATDEVTRPRSIRFRYQDAEGG 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                AD  LA C+QHE+D LNGI ++  LSRLKRD + KK  K
Sbjct: 118 MHEDVADDFLAICIQHEVDQLNGIFWLQRLSRLKRDRLVKKWEK 161


>gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 212

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 42  MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 101

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   SD+     EGCLSIP  RA + R  +I  R  
Sbjct: 102 FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 161

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 162 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 199


>gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
 gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 171

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   SD+     EGCLSIP  RA + R  +I  R  
Sbjct: 61  FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489]
 gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489]
          Length = 192

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 11/168 (6%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +    + +LR+   P+E  ++N ++   ++ M E M S DG+GLAA Q+G+  R  V+  
Sbjct: 3   ICKLGEDVLRQKCVPVESNEVNDELRATLNEMFETMISADGVGLAAPQVGISKRFFVVIS 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D+  R     FINP+II  S + S Y+EGCLS+P     + R   I+V  +D N +  +
Sbjct: 63  DDNVRRV----FINPEIIKTSAENSEYEEGCLSLPGVSEKIVRPVKISVSAIDENGKRFV 118

Query: 124 IYA-DGLLATCLQHELDHLNGILFIDHLSRLKR----DMITKKMSKLV 166
           +   DGLLA  +QHE DHLNGIL+ID      +    ++  KK  +  
Sbjct: 119 LDDVDGLLARIIQHENDHLNGILYIDRGDEEFKNKTVELFKKKAERAQ 166


>gi|315604653|ref|ZP_07879716.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313665|gb|EFU61719.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 210

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 32/183 (17%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I   P+L R++ P+E  +S++ +L+ +M++ M++  G+GLAA Q+GV  ++ V
Sbjct: 1   MSILPICITGTPVLHRLAAPVESFDSELRDLVTDMIDTMHAAPGVGLAAPQVGVGSQVFV 60

Query: 61  IDLQDHAHRKNPMV----------------------------FINPK----IITFSDDFS 88
                                                       +      I+    D +
Sbjct: 61  WRYAGGGAFDTHYRDVLQLDEGPARGFNTVTSGVVVNPTLDLVWDTHGAGAILPAEPDIA 120

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              EGCLS+P Y   ++R+    +R  D       + A G LA   QHE DHL G L++D
Sbjct: 121 HESEGCLSVPGYGYPLRRALGAVLRGYDTRGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180

Query: 149 HLS 151
            L 
Sbjct: 181 RLD 183


>gi|166713383|ref|ZP_02244590.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 171

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  +I  R  
Sbjct: 61  FGFEASERYPEAPAVPLTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|222056880|ref|YP_002539242.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221566169|gb|ACM22141.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 168

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 103/168 (61%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + ++++P P+L+++  P+  I+ +I  L+ ++L+ M++    +G+AA QIGV  R+ 
Sbjct: 1   MPGQKILLYPHPVLKKLCHPVGAIDGEIKGLLQDLLDCMHAGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D+ +  + K+       +   +IT     ++ +EGC+S+PDY  DV+R+  ITVR+ D
Sbjct: 61  VVDVSNSRNGKDNNHGLLQLINPVITERSGAAIMREGCMSVPDYTGDVERATEITVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N   + + A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 121 GNGIEREVKASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKNYK 168


>gi|326329902|ref|ZP_08196217.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952293|gb|EGD44318.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 204

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+  +  P++ R  + +E  +  +  L  +M+  MY+ +G+GLAA QIG    + V D
Sbjct: 24  VRPITRWGTPVMHRPKKQVEVFDDALTELAADMVATMYAAEGVGLAADQIGEDVAIFVFD 83

Query: 63  LQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D   R+   V  NP             V  EGCLS P    D  R  +  V  +  + 
Sbjct: 84  CPDATGRRTVGVVCNPVLTLPEGDDRHLDVDLEGCLSFPGAFVDCGRPDWAAVDGLGLDG 143

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q      +GLLA CLQHE DH NG +F D +S   R  +TK+  ++ Q
Sbjct: 144 QPVHFEGNGLLARCLQHETDHTNGTVFGDRISAKARKKLTKEHDRVAQ 191


>gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
 gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
          Length = 161

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V +P  +L     P++  +  +  L+++M + M   DG+GLAA QIG+  ++ +
Sbjct: 1   MAVKKIVSYPAEVLEAECEPVKVFDKKLGKLLNDMYDTMIEFDGVGLAAPQIGLSRQIAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP+I+  + + +  +  CLS P    +V R  ++ ++  D   +
Sbjct: 61  VDIDDEFGT---IEIINPEILETNGEQTGPEG-CLSFPGLYGEVTRPEYVKIKAQDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  + A+  LA  + HE+DHL+G+LF   ++R
Sbjct: 117 YFTLEAEDFLARAILHEIDHLHGVLFTSKVTR 148


>gi|327194673|gb|EGE61521.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 164

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R   
Sbjct: 1   MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLR--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + +        +++NP I   S +  ++ EG +S+P    DV R   I  RY D + +
Sbjct: 58  VMVLELGRADGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K  
Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 163


>gi|260437318|ref|ZP_05791134.1| peptide deformylase [Butyrivibrio crossotus DSM 2876]
 gi|292810230|gb|EFF69435.1| peptide deformylase [Butyrivibrio crossotus DSM 2876]
          Length = 168

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR+V +P+++I      L+ +ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 11  MALRNIRINDDPILRKVCKPVQEITKKTEELVGDMLDTMYEANGVGLAAPQVGILKRIVV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P++ INP+I+  S   +  +  CLSIP     V R  ++  +  D    
Sbjct: 71  IDIGDG-----PIIMINPEILETSGSQTGQEG-CLSIPGKAGIVTRPNYVKAKAYDLQMN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA  + HEL HL+G L+IDH+ 
Sbjct: 125 EYTIEGEELLARAICHELGHLDGDLYIDHVE 155


>gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora]
 gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora]
          Length = 201

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +       LR  ++ I +IN ++ ++  +ML  MY+  GIGLAA Q+G+  +L+VI
Sbjct: 29  SILEIHKLGSDKLRTSAKRIMRINEEVRDIARDMLRSMYAAKGIGLAAPQVGINKQLIVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+        P++ INP+II  +   + Y+EGCLSIP    DV R + I V + D     
Sbjct: 89  DIDLENSTTPPIILINPEIIASNASLNTYEEGCLSIPGVYLDVVRPSIIEVSFRDEQDFP 148

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITKKMSK 164
           + +  DGLLA C+QHE+DHL G+LF+D +   SRL+ +++   + K
Sbjct: 149 RCLKTDGLLARCIQHEMDHLKGVLFVDRVKDESRLEEELVKNNLRK 194


>gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 158

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++SR + K +  +  LI++M E M   +G+GLAA Q+GVL R++ 
Sbjct: 1   MAYRVIRTDDDPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +                I F     +  EGCLS+P+ +  VKR   I V+Y+D N +
Sbjct: 61  VDDRTEHRFALINPE-----IIFESGTQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A   LA  LQHE+DHLNGIL+ D
Sbjct: 116 KKEIEAKEYLARILQHEIDHLNGILYSD 143


>gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 171

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  +I  R +
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDDSPIAREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|168180956|ref|ZP_02615620.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182668254|gb|EDT80233.1| peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 178

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ F D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQFGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + +     +        +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 208

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 17/166 (10%)

Query: 2   VKKPLVIFPDPILRRVSRP--IEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           ++  LV   +P+LR  + P  I++I S +I  LI++M + +    G+GLAA Q+GV  +L
Sbjct: 13  MRLKLVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQL 72

Query: 59  VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            +I+ +    +  P               V INP +         + EGCLS+  + A V
Sbjct: 73  AIIEDRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVV 132

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            R   + V  +D N   + I A G  A  LQHE+DHLNG L++D +
Sbjct: 133 PRYRKVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRM 178


>gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 147

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E M+  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMHENNGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +          I         +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+  LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145


>gi|119485654|ref|ZP_01619929.1| polypeptide deformylase [Lyngbya sp. PCC 8106]
 gi|119456979|gb|EAW38106.1| polypeptide deformylase [Lyngbya sp. PCC 8106]
          Length = 175

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +P+LRR ++PI  I + D+  LIDN++  +  T+G+G+AA Q+    RL
Sbjct: 1   MTEILQVAQLGNPVLRRHAQPITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +          P   INPKI+  S +     EGCLSIP  R  V R   I V 
Sbjct: 61  LIVASRPNRRYPQAPLMAPTAMINPKIVNHSTEQEKGWEGCLSIPGVRGLVPRYQTIQVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           Y D + Q Q       +A   QHE DHL GI+F+D ++  +
Sbjct: 121 YTDRSGQLQRQQLTDFVARIFQHEYDHLEGIVFLDRVNDEQ 161


>gi|167747883|ref|ZP_02420010.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662]
 gi|167652705|gb|EDR96834.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662]
          Length = 157

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 5/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ S+ I+++ S  M LI++M + MY   G+GLAA Q+G+L RLVV
Sbjct: 1   MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I      +   P+V INPKI+    +    +  CLS+P   A VKR   +    +D +  
Sbjct: 61  I----DTYEGQPLVLINPKIVEKDGEQIGDEG-CLSLPGKVAVVKRPNHVVCEALDRDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              +  +GLLA  + HELDHL+G+L+ D      RD+  ++
Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156


>gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2]
 gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2]
          Length = 170

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  P+ +L     P+   + ++  L+D+M E M  +DG+G+AA Q+G   R+ +
Sbjct: 1   MAIRTVVKHPNKVLETNCEPVTVFDKNLSVLLDDMHETMVESDGVGIAAPQVGEAVRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +            + +    +   +      EGCLS P    +V+R   I ++  + +  
Sbjct: 61  V----DFREGQEPIEMVNPELVLFEGAETDIEGCLSFPGIFGEVERYDHIKIKAQERDGS 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A+G  A  + HE+DHL+G+LF    S++ + +  +++ ++++
Sbjct: 117 WYELEAEGYEARAILHEMDHLDGVLFT---SKITKYVTQEELDEMIR 160


>gi|291543910|emb|CBL17019.1| peptide deformylase [Ruminococcus sp. 18P13]
          Length = 153

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +  R +E+ +  +  LID+M E +    G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIVTSEDPILSKPCRTVEEFDDKLGQLIDDMFETLEKAKGLGLAAPQVGILKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D              +I          EGCLS P+    V R     +R  D + +
Sbjct: 61  MDVGDGRVEAV------NPVILKESGKQRDVEGCLSCPNQWGYVTRPNKCRLRAYDRHGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
              +    L   C  HE DHL+G+LF 
Sbjct: 115 EFTMDLKELGCRCACHETDHLDGLLFT 141


>gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 181

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   DP L  +++P++     +  I  LID++LE MY+ +G GLAA QIGV  +
Sbjct: 1   MAIQSILRMGDPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQ 60

Query: 58  LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV           A +    + INP I   SD      EGCLS+P  RA V R   I  
Sbjct: 61  VVVFGFDQNPRYPDAEQVPETILINPIITPLSDISMEDWEGCLSVPGLRAKVPRYTKIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  D   Q      +   A  ++HE DHL G LF   +   
Sbjct: 121 QGFDRYGQSIDRTVEDFHARVVRHECDHLIGKLFPMRVKDF 161


>gi|190891919|ref|YP_001978461.1| peptide deformylase protein [Rhizobium etli CIAT 652]
 gi|190697198|gb|ACE91283.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 164

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R   
Sbjct: 1   MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLR--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + +        +++NP I   S +  ++ EG +S+P    DV R   I  RY D + +
Sbjct: 58  VMVLELDRADGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K  
Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 163


>gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum]
          Length = 177

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 1/164 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ + DP L   S  + +I+ ++ + +  M E++Y   GIG+AA Q+G   R  V D+  
Sbjct: 6   ILSYGDPRLLIKSTEVTRIDQEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65

Query: 66  HAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            A   +     +   +I+  +     +EGCLS P     V+R+  I ++ +D   +  ++
Sbjct: 66  RADPGSRTPVTMINPVISAKEGAITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLVL 125

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +GL A  +QHE+DHL G+L  +H++R  +  + K+M  + ++
Sbjct: 126 EGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEMRAIEKI 169


>gi|257868125|ref|ZP_05647778.1| formylmethionine deformylase [Enterococcus casseliflavus EC30]
 gi|257874600|ref|ZP_05654253.1| formylmethionine deformylase [Enterococcus casseliflavus EC10]
 gi|325567766|ref|ZP_08144377.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
 gi|257802239|gb|EEV31111.1| formylmethionine deformylase [Enterococcus casseliflavus EC30]
 gi|257808764|gb|EEV37586.1| formylmethionine deformylase [Enterococcus casseliflavus EC10]
 gi|325158539|gb|EGC70686.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
          Length = 163

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR ++P++ I  +++ L+D++ E M + DGIG+AA Q+G   ++ ++
Sbjct: 1   MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++++    +     I        D      EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVEEDDRFEMINPEIIASSGESLDV-----EGCLSIPHTFGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA  +QHE+DHLNG+LF+D L
Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKL 144


>gi|188996826|ref|YP_001931077.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931893|gb|ACD66523.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 169

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M K  ++ +PD  L+R S  +     +    I+ +   MY++ G +G+AA Q+    R +
Sbjct: 1   MEKLEILKYPDERLKRKSIEVVDFGKEFKEFIEKLTYTMYNSPGGVGIAAPQVNNPIRTI 60

Query: 60  VIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++D     H+ N +    + ++   I  ++   +++EGC+S+PDY  +VKR  +I V   
Sbjct: 61  IVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEIIFREGCMSVPDYTGNVKRFYYIKVEAQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N        +G  A  +QHE+DHL G +FI+ +   K D+  +K+ K
Sbjct: 121 DINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVYK 168


>gi|257784671|ref|YP_003179888.1| peptide deformylase [Atopobium parvulum DSM 20469]
 gi|257473178|gb|ACV51297.1| peptide deformylase [Atopobium parvulum DSM 20469]
          Length = 180

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 1/159 (0%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           V++PDP L +    I+ IN D+  + ++ML+VMY+TDG+GLA  QIG + R+VVID+   
Sbjct: 9   VLWPDPRLSQKCEEIDDINDDVRKMAEHMLKVMYATDGVGLAGPQIGYMKRMVVIDVDYP 68

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             ++NP V INP+I     +  VY+EGCLS P     V R + + V   + +       A
Sbjct: 69  NGQENPFVLINPEIKVADGEPRVYEEGCLSFPGITVPVTRPSHVVVHAYNLDGDLMRYEA 128

Query: 127 DGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +G L A CLQHE+DH+NG+   DHL    R    ++  +
Sbjct: 129 EGDLFAVCLQHEIDHINGVTMPDHLGPGARMETLREYKE 167


>gi|225377871|ref|ZP_03755092.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM
           16841]
 gi|225210309|gb|EEG92663.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM
           16841]
          Length = 166

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L ++ +P++++      LI++ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 10  MALRTIRVQGDPVLEKICKPVKELTPRTKELIEDMLDTMYEANGVGLAAPQVGILKRIVV 69

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V +NP I+  S + +  +  CLSIP     V R  ++ V   D N +
Sbjct: 70  IDVGEG-----PVVMVNPVILETSGEQTGDEG-CLSIPGKAGQVTRPNYVKVHAFDENME 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I    L+A  + HE+DHL+G L+++ + 
Sbjct: 124 EYEIEGTELMARAMCHEIDHLDGHLYVEKVE 154


>gi|187777638|ref|ZP_02994111.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC
           15579]
 gi|187774566|gb|EDU38368.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC
           15579]
          Length = 150

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + IF D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRIFDDEILRKKSKVVEVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V +  CLSIP+    +KR   +T++ ++   
Sbjct: 61  VIDM-----GQGLIKLVNPKIINKEGTQEVIEG-CLSIPNTWGKLKRPKKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268]
 gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268]
          Length = 164

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  + I+++     +LI +M E MY  +G+GLAA Q+G+L +L V
Sbjct: 1   MAIRSIRKIGDSILEKKCKEIKEMTDKTRDLIQDMFETMYDANGVGLAAPQVGILKQLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          INPKI    ++    +EGCLS+P     V R   I +  +D N +
Sbjct: 61  VDIGDGVRYVC----INPKIEAVGEEEQCGEEGCLSVPGKEGKVTRPMNIHLEALDQNME 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A G LA    HE DHL G+L+ + + 
Sbjct: 117 PFSLDASGFLARAFCHEYDHLQGVLYTEKVE 147


>gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 197

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+       + +D+  LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   R +              +I     D     EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D + +   I   GL A  LQHE  HL+G L++D L         + + 
Sbjct: 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRLIGRHARSAKRAVK 175


>gi|210633316|ref|ZP_03297750.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279]
 gi|210159178|gb|EEA90149.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279]
          Length = 178

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP LR+    +E+IN +++ L++ M + M+   G GLAA Q+G   +L +
Sbjct: 1   MEVNGIVLSPDPRLRQECAEVEEINGELIELVERMKDQMFENGGCGLAAPQVGQTIQLAI 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID         +P V INP I+  SD+     EGCLSIP    ++ R   + V   + + 
Sbjct: 61  IDTEYSSKKDYDPYVLINPVIVEQSDNLVPSSEGCLSIPGINCEILRPDHVVVEAYNLDG 120

Query: 120 QHQIIYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 A G L   CLQHE+DHL+G    D L+  +R    K+  +
Sbjct: 121 DCIRYEAAGDLFCVCLQHEIDHLHGKTMFDRLTPQQRVHAMKQYQE 166


>gi|253681826|ref|ZP_04862623.1| peptide deformylase [Clostridium botulinum D str. 1873]
 gi|253561538|gb|EES90990.1| peptide deformylase [Clostridium botulinum D str. 1873]
          Length = 159

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR S+ I++I+ +++ LI ++ + +YS DG+GLAA QIG+L R  +
Sbjct: 1   MAIKNIVTVENKLLRRKSKRIDRIDDEVLELIQDLKDTLYSGDGVGLAAPQIGILKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +   +  CLS P Y   V R   + V  M+   +
Sbjct: 61  IDLRDGNG---PLILLNPKILKKIGKYEDGEG-CLSYPGYEGIVVRPRKVVVSGMNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +    A GL+A  + HE DHL+GIL++D   ++ +
Sbjct: 117 NVQYEATGLMARAICHETDHLDGILYMDLAKKMYK 151


>gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS]
 gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS]
 gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS]
 gi|122977465|sp|Q1BEJ4|DEF_MYCSS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513055|sp|A1UAD9|DEF_MYCSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513446|sp|A3PTZ4|DEF_MYCSJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|108767968|gb|ABG06690.1| peptide deformylase [Mycobacterium sp. MCS]
 gi|119692724|gb|ABL89797.1| peptide deformylase [Mycobacterium sp. KMS]
 gi|126232971|gb|ABN96371.1| peptide deformylase [Mycobacterium sp. JLS]
          Length = 197

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+LR  + PI   +      ++ +LI ++ E M + +G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   R                 I     D    +EGCLS+P  +    R+ 
Sbjct: 61  QRVFVYDCPDSRGRAGRRRGVVINPVLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +     +   GL A  LQHE  HL+G L++D L         + + 
Sbjct: 121 WARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRLIGRHARAAKRAVK 175


>gi|225569235|ref|ZP_03778260.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM
           15053]
 gi|225162034|gb|EEG74653.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM
           15053]
          Length = 157

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    + +L +  +P++K+      LI++M + MY   G+GLAA Q+GVL R+V 
Sbjct: 1   MATRKIRELGEEVLTKTCKPVDKLTLRTKVLINDMFDTMYEAYGVGLAAPQVGVLKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I              +EGCLS+P     V R  ++ VR +D + Q
Sbjct: 61  IDVGEGPIVLINPEIIETSGE------QTGEEGCLSVPGKYGIVTRPDYVRVRALDEDMQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + +   GLLA    HE+DHL+G ++++
Sbjct: 115 ERELEGTGLLARAFCHEIDHLDGNMYVE 142


>gi|118602931|ref|YP_904146.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567870|gb|ABL02675.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 185

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 18/166 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PD  LR  ++ +  I+  I  LI +M E +Y+ DGIGLAA Q+    ++VVI
Sbjct: 1   MILPILNYPDKRLRTKAKHVNVIDETIQTLIKDMFETIYAKDGIGLAATQVDQHLQVVVI 60

Query: 62  DLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           DL+                      +K+  +      I   D    + EGCLS+PD++A+
Sbjct: 61  DLEPNSQDDYQLFLKNFQRSSHKQSQKHHPLCFINPRIKEKDGQEKHIEGCLSVPDFQAE 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           V+R+  I V  ++   +   + A GLLA C+QHELDHL G+LF+D+
Sbjct: 121 VQRANHIKVEALNEKGEVFTLQATGLLAICIQHELDHLKGVLFVDY 166


>gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931084|sp|Q82TW4|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 176

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP++   DP L + +R +++    ++  L+ +M + M + +G GLAA QIGV  ++V+
Sbjct: 1   MIKPVLKMGDPCLLQPARRVDQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP +   ++      EGCLSIP  R  V R   +  + +
Sbjct: 61  FGVEHSPRYPDAESVPFTVLINPVLTPLTEQMEEDWEGCLSIPGMRGLVPRYTRLRYQGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D           G  A  +QHE DHLNGIL+   ++ L++
Sbjct: 121 DAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRK 160


>gi|300854550|ref|YP_003779534.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300434665|gb|ADK14432.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 150

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + +    D ILR+  R +EK++  I+ L+ +M + +++  +G  +AA Q+GVL R V
Sbjct: 1   MALRNIRTLGDEILRKKCRAVEKVDDRILTLLKDMADTLHNTENGAAIAAPQVGVLRRAV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +       +  +NP+II       V +  CLSIP+    + R A + V+ ++   
Sbjct: 61  VIDMGEG-----IICLVNPEIIEEEGSQEVIEG-CLSIPNKWGKLIRPAKVKVKALNEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   I  +G LA CL HE++HL+GILFID ++  
Sbjct: 115 EEFTITGEGDLAKCLCHEIEHLDGILFIDKVTEF 148


>gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
          Length = 197

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  +P+L + + P+E     K +++I+ L+D+M + M + +G+GLAA QIG  
Sbjct: 1   MAILPICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEG 60

Query: 56  YRLVVIDLQD----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            R+ V D  D            V    +I     D     EGCLS+P       R+ +  
Sbjct: 61  LRMFVYDCPDGGVRRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEGFPTGRADWAK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V   D N     I  +G  A  LQHE  HL+G L++D L         K + +
Sbjct: 121 VVGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVLVGRNARAAKKAVKR 173


>gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3]
 gi|81312889|sp|Q5L6G8|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3]
          Length = 184

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  P LRR +  I +I  +I  L  +M E M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRELEYYGSPTLRRKAEAILEITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVSLFVM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P V+INP +   S+D  + +EGCLSIP  RADV R   ITV+ +
Sbjct: 61  CVEGETEDGDLIFCDFPKVYINPVLSNVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHLNGIL+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIVMHENDHLNGILYIDKMEEPKDYKKFKSALEKIRR 173


>gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|25452915|sp|Q8PGV2|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 171

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S+D     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEDMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE D+L G L+   +   
Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDNLVGRLYPSRIENF 158


>gi|306820768|ref|ZP_07454393.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551158|gb|EFM39124.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 166

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 10/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I  DP+LR+VSR + +++  I  LI++M++ M   DG+GLAA Q+GVL R++V
Sbjct: 1   MGIRNLRIDGDPLLRKVSREVTELSDKIRLLIEDMMDTMTENDGVGLAAPQVGVLKRVIV 60

Query: 61  IDLQ--------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+         D      P+  INP II    +    +  CLS+P+   DVKR + I V
Sbjct: 61  VDVSDVDPEVLKDENAPDEPIALINPVIIEKDGEEVGQEG-CLSVPNLTGDVKRPSRIVV 119

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           +  +   +  +  A    A  L HE+DHLNG+L+ID    L R+ + 
Sbjct: 120 KAKNEKFEDVVFEAKHFFARVLCHEIDHLNGVLYIDKAENL-RERVE 165


>gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 177

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L R +  +   +  ++  L+ +M E M + DG+GLAA QIGV  R+V
Sbjct: 1   MATREVLRMGDVRLLRKAGEVRLFDTPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP +   SD      EGCLS+P  R  V R   +  + 
Sbjct: 61  IFEVNQNPRYPDAETVPQTVLINPVLTPLSDVMEEGWEGCLSVPGMRGLVPRYTHLRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D           G  A  +QHE DHL+GIL+   +  +K
Sbjct: 121 RDEYGALIDRTVSGFHARVVQHECDHLDGILYPMRIRDMK 160


>gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1]
 gi|189083069|sp|A5FRA7|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1]
          Length = 167

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+P+LR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RLVV
Sbjct: 1   MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+II       V +  CLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDTKEAT---VLINPEIIKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I   G++A  L+HE +HL+GIL+IDHL   
Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149


>gi|321472939|gb|EFX83908.1| hypothetical protein DAPPUDRAFT_47755 [Daphnia pulex]
          Length = 166

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P P+L R S PI+ I++ I   +D+MLE MY++ GIGLAA+Q+G+L R++V
Sbjct: 1   MAVLKIVEEPSPLLHRTSLPIKTIDATIHKALDDMLETMYASSGIGLAAIQVGLLKRMLV 60

Query: 61  IDLQD----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           IDL +          P+  INP+I+  SD+ + + EGCLS+P +  ++ R A I VRY D
Sbjct: 61  IDLGEASESDTWAGKPLKIINPQILWTSDNQNTFNEGCLSVPQHYVEISRPAEIKVRYQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              ++  I+A GLLATCLQHE+DHLNGI  +
Sbjct: 121 ETGKYHEIHAAGLLATCLQHEIDHLNGITIL 151


>gi|269926311|ref|YP_003322934.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789971|gb|ACZ42112.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798]
          Length = 203

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 18/185 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P    +LR+ S P+ K +S++  L+++M+E M   DG+GL+AVQ+G L 
Sbjct: 1   MAVRRILQMENPDDLSVLRKRSSPVTKFDSELRKLVEDMIETMREADGVGLSAVQVGDLR 60

Query: 57  RLVVIDLQDHAH-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           R+VV+++                     V INP+I   S D    QEGCLS+P   A+V 
Sbjct: 61  RVVVMEMPGKYEQDEDGNQIEVSPPKLYVMINPEITKVSHDRIPMQEGCLSLPGRYAEVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R+ ++ VRY D N +   + A+   L+ C+QHE+DHL+GILF + +  +       +  K
Sbjct: 121 RAPWVEVRYKDLNGKEHKLLAEEQLLSQCIQHEVDHLDGILFTERI--VDWSTFRDERQK 178

Query: 165 LVQLR 169
             + R
Sbjct: 179 QKKSR 183


>gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1]
 gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT]
 gi|123773670|sp|Q3ZXA9|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1]
 gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT]
          Length = 167

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+P+LR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RLVV
Sbjct: 1   MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+I+       V +  CLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDTKEAT---VLINPEIVKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I   G++A  L+HE +HL+GIL+IDHL   
Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149


>gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 212

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 32/182 (17%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L R + PI+  +S++ +L+ +M+E M++  G+GLAA Q+GV  ++ V
Sbjct: 1   MSILPICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFV 60

Query: 61  IDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQ-------------- 91
                              D    +     ++  ++  + D                   
Sbjct: 61  WRYGGAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120

Query: 92  ---EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              EGCLS+P Y   ++R+    +R  D +     + A G LA   QHE DHL G L++D
Sbjct: 121 LESEGCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVD 180

Query: 149 HL 150
            L
Sbjct: 181 RL 182


>gi|89900986|ref|YP_523457.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89345723|gb|ABD69926.1| Peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 186

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R++ P+   +  ++  LI +ML+ M + DG GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRIAPPVTLFDTDELHLLISDMLDTMLAADGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKII-------------TFSDDFSVYQEGCLSIPDYRADVKR 106
           +        R      +   ++               +       EGCLS+P  RA V R
Sbjct: 61  IFGSNARNPRYPQAPVVPQTVLLNPVITPLPPSENDATPLQVEDWEGCLSVPGLRAMVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            A I     D          +G  A  +QHE DHL G L+   +    R
Sbjct: 121 FARIRYTGFDQYGDPINRTVEGFHARVVQHECDHLIGKLYPMRVRDFSR 169


>gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48]
          Length = 178

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA QIG+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S +     EGCLS+P  R  V R   I+  
Sbjct: 61  VIFGFERSERYPDAEAVPRTILLNPVITPMSTEVEDGWEGCLSVPGLRGVVPRYKHISYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D +      +ADG  A  +QHE DHL G L+   +    +
Sbjct: 121 GVDPDGNPIDRFADGFHARVVQHECDHLIGRLYPSRIQDFSK 162


>gi|153941088|ref|YP_001391920.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|170756373|ref|YP_001782237.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|152936984|gb|ABS42482.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|169121585|gb|ACA45421.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|295319940|gb|ADG00318.1| peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 178

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + +     +        +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|291530592|emb|CBK96177.1| peptide deformylase [Eubacterium siraeum 70/3]
 gi|291557816|emb|CBL34933.1| peptide deformylase [Eubacterium siraeum V10Sc8a]
          Length = 160

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ +    D  LR+  + +   +  +  ++D+M E M   +G+GLAA QI VL R+VV
Sbjct: 1   MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +    + +   +IT         EGCLS+P     V R A + V+  D   +
Sbjct: 61  IDVGDEHGK----IELINPVITSMKGKQHELEGCLSVPGMWGYVDRPAKVKVKAQDRYGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  L HE+DHL+GILF D    L      ++  K
Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160


>gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 187

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   +    DP+LR+ +R + +   ++  I  L+ NM E M+   G+GLAA QIG   +L
Sbjct: 1   MLLNICTAGDPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQL 60

Query: 59  VVIDLQDHAHRKNPMVFINPK-------------IITFSDDFSVYQEGCLSIPDYRADVK 105
            V++ +   H+K     +                 I          EGCLSIP + A V 
Sbjct: 61  AVLEGRPQFHKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSAYEGCLSIPGFMASVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           RS  + V  ++  A+ Q+I A+G  A  LQHE+DHLNG+L+ID +  
Sbjct: 121 RSQSVRVTCLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRMES 167


>gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
 gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
          Length = 198

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L R +  +   +      D++ L+++M E + ++ G+GLAA Q+GV 
Sbjct: 1   MTILPIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVG 60

Query: 56  YRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
            RL V D  D    K           V     I     D    +EGCLS P  R    R+
Sbjct: 61  LRLFVYDCPDDTSGKRVSRKGEVINPVLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A+  V  +D   Q   I   GL A  LQHE+ HL+G L++D L         +K  K V+
Sbjct: 121 AWAKVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVG----RWARKAKKAVK 176

Query: 168 L 168
            
Sbjct: 177 Q 177


>gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 179

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      + ++  LID+M + M    G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFEASERYPDAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRYQQIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D   +  + +ADG  A  +QHE DHL G L+   ++   +
Sbjct: 121 GFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|260890452|ref|ZP_05901715.1| hypothetical protein GCWU000323_01622 [Leptotrichia hofstadii
           F0254]
 gi|260859694|gb|EEX74194.1| peptide deformylase [Leptotrichia hofstadii F0254]
          Length = 171

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V++  P LR  S  ++ ++  +   +D M+ +M   +G+GLAA Q+ +  R  V++  
Sbjct: 2   KIVLYGHPTLREKSEKVDAVDDSLRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEH- 60

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                      INP+I+ FS++ +  +EGCLSIP     V R A I V+Y++ N +  + 
Sbjct: 61  ----EGVVKKVINPEILEFSEEIADMEEGCLSIPGIYKKVNRPAKIKVKYLNENGEEVVE 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             D + A   QHE DH+ GILF D LS + + ++ KK+  L +
Sbjct: 117 ELDEMWARAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKK 159


>gi|221194831|ref|ZP_03567888.1| peptide deformylase [Atopobium rimae ATCC 49626]
 gi|221185735|gb|EEE18125.1| peptide deformylase [Atopobium rimae ATCC 49626]
          Length = 183

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V++PD  L      I +I  +I ++   ML+ MY+TDG+GLAA QIG+L R+VVID+ 
Sbjct: 6   EIVLWPDERLTDTCEEISEITDEIRDIAKRMLQDMYATDGVGLAAPQIGILKRMVVIDVD 65

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +KNP V INP++IT   +   Y EGCLS P     V R + + V   + +      
Sbjct: 66  YPDGQKNPFVLINPEVITADGEPRTYNEGCLSFPGITVPVTRPSHVVVHAQNLDGDLMQY 125

Query: 125 YADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            A+G L A CLQHE+DH+NGI   DHL    R  + ++ 
Sbjct: 126 EAEGDLFAVCLQHEIDHINGITMPDHLGPTARMEVLQRY 164


>gi|257062237|ref|YP_003140125.1| peptide deformylase [Cyanothece sp. PCC 8802]
 gi|256592403|gb|ACV03290.1| peptide deformylase [Cyanothece sp. PCC 8802]
          Length = 178

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             +    +PILR+ ++ I +I + ++  LID ++       G+G+AA Q+    RL ++ 
Sbjct: 5   LTIAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILA 64

Query: 63  LQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
              +         +P+  INP+I++ S +     EGCLS+P  R  V R  ++ V Y D 
Sbjct: 65  SHPNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDR 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             Q Q       +A   QHELDHLNG++F+D + 
Sbjct: 125 FGQFQQQKLTDFVARIFQHELDHLNGLVFLDRVE 158


>gi|167750831|ref|ZP_02422958.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702]
 gi|167656266|gb|EDS00396.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702]
          Length = 160

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ +    D  LR+  + +   +  +  ++D+M E M   +G+GLAA QI VL R+VV
Sbjct: 1   MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +    + +   +IT         EGCLS+P     V R A + V+  D   +
Sbjct: 61  IDVGDEHGK----IELINPVITSMKGKQHELEGCLSLPGMWGYVDRPAKVKVKAQDRYGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  L HE+DHL+GILF D    L      ++  K
Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160


>gi|254518787|ref|ZP_05130843.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226912536|gb|EEH97737.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 150

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F   ILR+ S+ +  ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFGGEILRKRSKEVLVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NP+II       V +  CL+ P+    +KR A +T++ ++   
Sbjct: 61  VIDM-----GQGLIKLVNPRIIKKEGIQEVIEG-CLNYPNRWGKLKRPAKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL+GILF D ++
Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLDGILFTDFVT 146


>gi|229826165|ref|ZP_04452234.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC
           49176]
 gi|229789035|gb|EEP25149.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC
           49176]
          Length = 175

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL + +R I++ +  I  LID+MLE MY  DG+GLAA Q+GVL RL V
Sbjct: 1   MALRNIRIVGDEILNKRAREIKENSDKIQTLIDDMLETMYDADGVGLAAPQVGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +  +   P VFINP+I+  S + +  +  CLS+P     V R  ++ ++ ++   +
Sbjct: 61  IDCSEDRNE--PFVFINPEILETSGEQTGSEG-CLSVPGKAGIVTRPEYVKMKALNREFE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             II  +GL A  + HE +HL+G ++ + +
Sbjct: 118 EYIIEGEGLFARAMVHENEHLDGHIYTEKV 147


>gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 191

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +P+LR+ +R + +    +  +   ID+++E M   +G G+AA Q+ V  R
Sbjct: 1   MTLLKIAHIGNPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVR 60

Query: 58  LVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  +++QD+               NP I   + +     EGCLS+P+ R  V R+  I +
Sbjct: 61  IFAVEVQDNPRYPYKPNIPLTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVDRTTEIRL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D   +       GL A   QHE DH++G+LF+D +  
Sbjct: 121 TGLDREGRPIDRVVRGLSAGTFQHEKDHVDGVLFVDRVKD 160


>gi|153933577|ref|YP_001384865.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153936131|ref|YP_001388335.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|152929621|gb|ABS35121.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152932045|gb|ABS37544.1| peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 178

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + +     +        +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|172038579|ref|YP_001805080.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
 gi|171700033|gb|ACB53014.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
          Length = 171

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 2   VKKP---LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           + KP   +    +PILR+ ++ +  I +  +   ID +L +     G+G+AA Q+   YR
Sbjct: 1   MIKPNLKIAQVGNPILRQQAQCVTDITDDKLQEFIDTLLTIAMDAKGVGIAAPQVSQSYR 60

Query: 58  LVVIDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           L ++    +          P V INP++++ S +     EGCLS+P  R  V R   ITV
Sbjct: 61  LFMVCSHPNPRYPDAPLMEPTVMINPRLVSHSKEMVKGWEGCLSVPRIRGLVPRYQTITV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y+D   Q         +    QHELDHLNGILFID + 
Sbjct: 121 EYLDRYGQLHQQELTDFIGRIFQHELDHLNGILFIDRID 159


>gi|153855354|ref|ZP_01996503.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814]
 gi|149752174|gb|EDM62105.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814]
          Length = 157

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F D +L +  + + K+      LI++ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIREFGDEVLNKECKEVTKMTLRTKVLINDMLDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        V +              +EGCLS+P     V R  +  V+ ++ + +
Sbjct: 61  IDIGEGPIVLINPVILETSGE------QTGEEGCLSLPGKAGIVTRPNYAKVKALNEDME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
             I+  +GLLA    HE+DHL+G L+ 
Sbjct: 115 EVILEGEGLLARAFCHEIDHLDGKLYT 141


>gi|326202810|ref|ZP_08192677.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
 gi|325986887|gb|EGD47716.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
          Length = 151

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D +LR+  RP+E++N  I +L+ +M + MY T +G GLAA Q+G+L R +
Sbjct: 1   MALRNIRTVEDEVLRKKCRPVEEVNDKIRDLLKDMADTMYDTGNGAGLAAPQVGILKRAI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D       +  +NP+II       V +  CLSIP     V R   + V+ ++   
Sbjct: 61  VIDMGDG-----LINLVNPEIIEQKGSQEVIEG-CLSIPGKWGKVIRPYEVRVKALNEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  +I     +A CL HE+DHL+GILF D ++
Sbjct: 115 EEVVIKGKKEMAKCLCHEIDHLDGILFTDKVT 146


>gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319]
 gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319]
          Length = 157

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  LV  P+ +L +    ++  ++ +  L++ M ++M   DG+GLAA Q+GVL ++ V
Sbjct: 1   MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +    + +   +I       +  EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDVDDRHGK----IELINPVIIEQRGEQIGPEGCLSFPGLFGDVARADYVKVRAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A G LA  +QHE+DHL+G+LF + +++
Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148


>gi|220927497|ref|YP_002504406.1| peptide deformylase [Clostridium cellulolyticum H10]
 gi|219997825|gb|ACL74426.1| peptide deformylase [Clostridium cellulolyticum H10]
          Length = 151

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D +LR+  RP++++N  +  L+ +M + MY+T +G GLAA Q+G+L R+V
Sbjct: 1   MALRNIRTLDDEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGNGAGLAAPQVGILKRIV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D          +               EGCLSI      V R   + V+ ++   
Sbjct: 61  VIDMGDGLINLVNPEIVE------QKGSQEVIEGCLSILGKWGKVIRPTEVKVKALNEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  II     +A CL HE+DHL+GILF D ++
Sbjct: 115 EEVIITGKKDMAKCLCHEIDHLDGILFTDKVT 146


>gi|162148854|ref|YP_001603315.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 176

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L R +  +      DI  LID+M+E M    G GLAA Q+ V  RL 
Sbjct: 1   MTLLKIARMGHPVLLRRADEVADPTAPDIARLIDDMIETMEDARGAGLAAPQVHVSLRLF 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V  +            +   V INP +    D+ ++  EGCLSIP  R  V R   I   
Sbjct: 61  VYRVPAERSAGGDDPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMVPRHVRIAYS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   Q     A G LA  LQHE DHL+GIL+   ++ L +    +++
Sbjct: 121 GLDRAGQAVQGVASGFLANVLQHEYDHLDGILYPMRMTDLGQMGFDEEI 169


>gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
 gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 6/169 (3%)

Query: 6   LVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++ +P P LR  +  I +       S+I  +   M  VMY+T+G GLAA Q+G+  RL+V
Sbjct: 5   VLKYPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMV 64

Query: 61  IDLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    + R    ++ +NPKI+ FS    + QEGCLS P+   DV+RS +I V   +   
Sbjct: 65  YNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +       G  A   QHE DHL+G++++D LS   R  +  ++ +LV+ 
Sbjct: 125 KKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVEE 173


>gi|322806950|emb|CBZ04520.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 178

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAVTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + +     +        +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|315453778|ref|YP_004074048.1| polypeptide deformylase [Helicobacter felis ATCC 49179]
 gi|315132830|emb|CBY83458.1| polypeptide deformylase [Helicobacter felis ATCC 49179]
          Length = 173

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 94/156 (60%), Gaps = 3/156 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P   LR  S  +   ++ +   +++M E M +  GIGLAA+Q+GV  R+++
Sbjct: 1   MAILEVLQYPHKKLRTRSSEVRVFDAQLHAFLEDMHETMLARKGIGLAAIQVGVPKRILI 60

Query: 61  ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+    +D        + I   +IT ++   +++EGCLS+P++  +++R A +T+ Y D 
Sbjct: 61  INLPREEDETQHPEDRLEIINPVITHTEGSILWREGCLSVPEFYEEIERHANLTLAYQDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + + +++ A  LL+  +QHE+DHLNGILF+D LS L
Sbjct: 121 HGESKMLQASELLSVAIQHEMDHLNGILFVDKLSML 156


>gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 179

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 8/167 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      + ++  LID+M + M    G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + INP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFEASERYPDAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRYQQIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             D   +  + +ADG  A  +QHE DHL G L+   ++   +    +
Sbjct: 121 GFDPKGEPIVRFADGFHARLVQHECDHLIGRLYPSRITDFSKFGFIE 167


>gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 179

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      + ++  LID+M + M S  G+GLAA QIGV  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + INP I           EGCLS+P  R  V+R   I   
Sbjct: 61  VIFGFEHSERYPDAEAVPQTILINPLITPLGPQMEEGFEGCLSVPGLRGAVERYQDIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D   +  + YA G  A  +QHE DHL G L+   +S   +
Sbjct: 121 GFDPKGEPIVRYASGFHARVVQHECDHLIGRLYPSRISDFSK 162


>gi|291518517|emb|CBK73738.1| peptide deformylase [Butyrivibrio fibrisolvens 16/4]
          Length = 164

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +  +  D +L +  +P++++   +  LID+M + MY  DG+GLAA Q+GVL R+ 
Sbjct: 1   MAVLEIREYGKDDVLLKTCKPVKELTPKLRTLIDDMYDTMYDADGVGLAAPQVGVLRRIC 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +      P+  INP ++  S + +  +  CLS+P     V R  +  V+ ++ + 
Sbjct: 61  VIDIGEG-----PVTLINPVVLETSGEQTGNEG-CLSVPGKTGIVTRPNYAKVKALNEDM 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+  + L+A  L HE+DHL+G ++ + + 
Sbjct: 115 EEFIVEGEELMARALLHEIDHLDGHIYTEKVE 146


>gi|119383398|ref|YP_914454.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373165|gb|ABL68758.1| Peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 185

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +P++I PDP LR +  P+ ++   +I  L  ++L  MY   G GLAA QIG  +R+ V+
Sbjct: 28  VRPILIHPDPALRVICEPVGRLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVM 87

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P V ++P+I     +    +E CLSIP     V R   I++R  D     
Sbjct: 88  DHGWKEGTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTGTL 147

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
           Q++   G+ A   QHE DHL+G L +D
Sbjct: 148 QLLTLTGIEARIAQHETDHLDGRLILD 174


>gi|237745527|ref|ZP_04576007.1| peptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229376878|gb|EEO26969.1| peptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 174

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++      L R S P+ + N  ++  L+ +M E M +  G GLAA QIGVL R+V
Sbjct: 1   MTVRKILKMGHSRLLRESEPVREFNTPELDELVSDMFETMQAAQGAGLAAPQIGVLKRVV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +      +    A      V INP I   +D+     EGCLSIP  R  V R A I    
Sbjct: 61  IFGYDENNRYPEAPPVPETVLINPVIRPLTDEIDEGWEGCLSIPGMRGVVPRWARIHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            D   +     A+G  A  +QHE DHL+GIL+   +  L  DM 
Sbjct: 121 FDQFGKRISRDAEGFHARVVQHECDHLDGILYPMRM--LDLDMF 162


>gi|307822304|ref|ZP_07652536.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736870|gb|EFO07715.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 178

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M   + +      +LR+ +  +  ++  +I  +I+ M   + +T G+G+AA QI  L ++
Sbjct: 1   MTRVREIAQLGAKVLRQKAEAVADVHDVEIRQIIEAMQSTLATTSGVGIAAPQISKLKQI 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           ++I          A    P V INP     S+      EGCLS+P  RA V R   I + 
Sbjct: 61  IIIASRPTPRYPSAPLMEPTVMINPCFEVLSEAQEKGWEGCLSVPGIRALVPRYQEIMIH 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y D           G +A   QHE+DHL G  ++D +          +  KLV
Sbjct: 121 YTDQQGGLVESKLSGFVARIFQHEVDHLEGKTYLDRVENNADIFAESEYVKLV 173


>gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 270

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R++V+
Sbjct: 83  EIVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 142

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +         P              MV +NP +   S+  +++ EGCLS+  +RA V+R 
Sbjct: 143 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVNGFRAAVERY 202

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 203 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 247


>gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5]
          Length = 133

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           MY   GIGLAA+QIGV  R++VID+      K P VFINP+I+  SD+ SVY+EGCLSIP
Sbjct: 1   MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           DY A+V+R A ++V+Y+D N + Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+
Sbjct: 61  DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMV 120

Query: 159 TKKMSKLVQLR 169
            KK +K  + +
Sbjct: 121 IKKFTKAAKSK 131


>gi|119773777|ref|YP_926517.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119766277|gb|ABL98847.1| Peptide deformylase [Shewanella amazonensis SB2B]
          Length = 174

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 5/152 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+ I  DP+L + + P+   +  +  L   ++  M    G+G+AA QIGV  RL ++   
Sbjct: 8   PIAITGDPVLYQKAAPVTVFDDSLERLSQTLMATMLQAKGVGIAAPQIGVSQRLFIVASR 67

Query: 62  --DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             +    A    PMV +NP +++ S ++   +EGCLS+P  R  + R  ++  ++ D   
Sbjct: 68  PNERYPDAPLMEPMVMVNPALLSGSSEWESSEEGCLSVPGKRLSIARHRWVEAKWQDLQG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  DG +A   QHELDHL+GI  ++ ++
Sbjct: 128 NAYSGRLDGFIARIFQHELDHLDGITLLERVT 159


>gi|118443269|ref|YP_877731.1| peptide deformylase [Clostridium novyi NT]
 gi|118133725|gb|ABK60769.1| peptide deformylase [Clostridium novyi NT]
          Length = 158

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 13/170 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR SR IEKI+ +++ LI ++ + +YS DG+GLAA QIGVL R  +
Sbjct: 1   MAIKNIVTADNQLLRRKSRRIEKIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +   +  CLS P Y   V R   + V  M+   +
Sbjct: 61  IDLRDGND---PLILLNPKILKKIGKYEDAEG-CLSYPGYEGVVIRPRKVIVAGMNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GL+A  + HE DHL+G+L++D         + KKM K+    +
Sbjct: 117 MVQYVATGLMARAICHETDHLDGVLYMD---------LAKKMYKIPTEEE 157


>gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 266

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R
Sbjct: 75  MSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRAPGVGLAAPQIGVPLR 134

Query: 58  LVVIDLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++V++         P                 +NPK+    +  +++ EGCLS+  +RA 
Sbjct: 135 IIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTALFFEGCLSVDGFRAV 194

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+RS  + V  +D + Q   + A G  A  LQHE DHL+G L++D +  
Sbjct: 195 VERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGTLYVDKMVP 243


>gi|319442383|ref|ZP_07991539.1| polypeptide deformylase [Corynebacterium variabile DSM 44702]
          Length = 215

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 31/193 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-------NSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
           M   P+VI  DP+L   + P+ +         +++  LI +M E +    G+GLAA Q+G
Sbjct: 1   MSVLPVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVG 60

Query: 54  VLYRLVVIDLQD---------------------HAHRKNPMVFINPKIITFSDDFSVYQE 92
           V  R+ V D  D                             V    +I     D     E
Sbjct: 61  VGLRVFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVE 120

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           GCLS+P Y     R+ +  V   D + +   +   G  A CLQHE  HL+G L+ID L  
Sbjct: 121 GCLSVPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDML-- 178

Query: 153 LKRD-MITKKMSK 164
           + R+    KKM K
Sbjct: 179 IGRNARAAKKMVK 191


>gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
 gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
          Length = 198

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 76/155 (49%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V++P P LR  S P+++INS +   +D M  +MY   GIGLAA Q+ + Y+L VI+L 
Sbjct: 2   DIVLYPHPALRYKSVPVQEINSALRKTVDEMFGLMYDAKGIGLAANQVALPYQLFVINLT 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                K+  +      I         +EGCLS P+    V RSA I V   D        
Sbjct: 62  ADPAEKSEEMVFINPTILKRRGQETGEEGCLSFPEMFGPVDRSAEIVVEAFDLRGALFRY 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               + A  +QHE DH+ G LFIDH+   +   I 
Sbjct: 122 ELSEMAARAVQHENDHIEGTLFIDHMKEAELAQIQ 156


>gi|315651132|ref|ZP_07904164.1| peptide deformylase [Eubacterium saburreum DSM 3986]
 gi|315486597|gb|EFU76947.1| peptide deformylase [Eubacterium saburreum DSM 3986]
          Length = 174

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + ++++N     LI++M+E M    G+GLAA QIGVL R+VV
Sbjct: 9   MAIRAIRVMGDNVLNKKCKEVKEVNDRTKILIEDMIETMREAGGVGLAAPQIGVLKRIVV 68

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+ +           +   +I   D   V  EGCLS+P     VKR  ++  +  D +  
Sbjct: 69  IETEPDNV-----HVLINPVIIKQDGEQVGYEGCLSVPGKSGIVKRPNYVAAKAFDIDMN 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT-KKMSKLVQL 168
              I  +GLLA  + HE  HL+G L++D +     ++I  +++ K+ + 
Sbjct: 124 EYTIEGEGLLARAICHECAHLDGELYVDLVEG---ELIDNEELEKMQKE 169


>gi|284042341|ref|YP_003392681.1| peptide deformylase [Conexibacter woesei DSM 14684]
 gi|283946562|gb|ADB49306.1| peptide deformylase [Conexibacter woesei DSM 14684]
          Length = 190

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 88/156 (56%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + ++ DP+LR  +RP+E+ +  + +LI  +  V+    G GLAA Q+GVL R+VV  + 
Sbjct: 22  EIRLWGDPVLRASARPVERFDDGLADLITRLRWVIDDATGAGLAAPQLGVLVRVVVYRVP 81

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D        V +NP I+  S + + + EGCLS+P   A V+R A + V   D + + + I
Sbjct: 82  DEERDGPARVLVNPAIVVRSAERTTFVEGCLSMPGIVAPVERCANVVVHACDEHGRAREI 141

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A G  A+ LQHELDHL+G+L  D L+   R    +
Sbjct: 142 AAAGDHASVLQHELDHLDGVLLPDRLTPEHRRSYVR 177


>gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH]
 gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH]
          Length = 174

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PD +LR  ++ +  I+ ++ N+   M+ +M    G+GLAA Q+G+   + V+   
Sbjct: 11  EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVVR-- 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + SVY+EGCLSIP    D+ R   ITV   D N +   I
Sbjct: 69  -ENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 127

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  LLA  +QHE+DHL G+LFID+     R+ + K   K  +L
Sbjct: 128 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 171


>gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ]
          Length = 179

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  K L    +P+LR+V+             + LI ++ + M    GIG+AA QIGV Y+
Sbjct: 1   MAIKDLTKMGNPVLRKVALEYPSEEIGGEKFIKLIKDLEDTMKENGGIGIAAPQIGVSYQ 60

Query: 58  LVVID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           + +I             + +  + +NP I         + EGCLS+P  R  V R   + 
Sbjct: 61  VAIIQLPDNSERYPDIAKSDQYIVVNPTIEVLDQTEQGFWEGCLSVPGLRGFVHRPRKVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + +++  AQ + +  +G LAT  QHELDHL G L+ID +  L      ++  +  Q
Sbjct: 121 ITFLNDRAQQEELILEGFLATVFQHELDHLFGKLYIDRIKDLTLLSYEEEFRQFWQ 176


>gi|110801598|ref|YP_698920.1| polypeptide deformylase [Clostridium perfringens SM101]
 gi|110682099|gb|ABG85469.1| peptide deformylase [Clostridium perfringens SM101]
          Length = 155

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D    +N  V INP++I  S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGD---GENEYVLINPEVIGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|255525805|ref|ZP_05392735.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296186362|ref|ZP_06854766.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255510538|gb|EET86848.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296049163|gb|EFG88593.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 156

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++ F D IL+R SR +EK++ +++ L++++ + +Y+  GIGLAA QIGVL +++ 
Sbjct: 1   MAVKQILQFGDNILKRSSRRVEKVDEELLGLVEDLKDSLYNGTGIGLAAPQIGVLKKVIF 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D        + +    I          EGCLS P Y   V R   + V       +
Sbjct: 61  IDLRDKTEP----ILLINPKIIKKIGKEDSVEGCLSYPGYEGIVVRPKKVIVAGKSLKWE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A+GLLA    HE+DHL+GIL+ D   ++ R
Sbjct: 117 DVEYTAEGLLAKAFCHEIDHLSGILYTDKAKKIYR 151


>gi|15892597|ref|NP_360311.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|23396566|sp|Q92HU7|DEFL_RICCN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15619763|gb|AAL03212.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 183

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  NNKSS-PIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+++LNG  F+D LS+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIEYLNGKTFLDSLSKLKRDTLLKKMLKHIKL 171


>gi|218249152|ref|YP_002374523.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|218169630|gb|ACK68367.1| peptide deformylase [Cyanothece sp. PCC 8801]
          Length = 178

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             +    +PILR+ ++ I +I + ++  LID ++       G+G+AA Q+    RL ++ 
Sbjct: 5   LTIAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILA 64

Query: 63  LQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
              +         +P+  INP+I++ S +     EGCLS+P  R  V R  ++ V Y D 
Sbjct: 65  SHPNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDR 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             Q Q       +A   QHELDHLNG++F+D + 
Sbjct: 125 FGQFQQQKLTDFVARIFQHELDHLNGLIFLDRVK 158


>gi|239626559|ref|ZP_04669590.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516705|gb|EEQ56571.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 162

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P++++    M LI++M E MY  +G GLAA Q+GVL ++V 
Sbjct: 1   MAVRQIRIMGDDILTKKCKPVKEMTRRTMELIEDMFETMYEANGCGLAAPQVGVLKQIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +    I   D      EGCLS+P     V R  ++ V+ +D N +
Sbjct: 61  IDVDDGN-----QYVLINPEIIAQDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HE+ HL G ++++
Sbjct: 116 PFELEGEGLLARAICHEVAHLEGQMYVE 143


>gi|168209296|ref|ZP_02634921.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|182626083|ref|ZP_02953844.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|170712476|gb|EDT24658.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|177908604|gb|EDT71125.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 155

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIKDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D    +N  V INP++   S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGD---GENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|241608057|ref|XP_002405931.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215500709|gb|EEC10203.1| polypeptide deformylase, putative [Ixodes scapularis]
          Length = 164

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D +L+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKILQTLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +                  +  +  +   LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  NNKSSTIAFINPEITYFSEEKQTFIEG-SLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD + KK
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKK 164


>gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925]
 gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925]
          Length = 156

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  + +++IN  I+ LI++M E MY  DG+GLAA QIGVL RLVV
Sbjct: 6   MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II+     + Y+  CLS+P  +  V R   +  + ++   +
Sbjct: 66  IDVGEG-----PISLINPEIISSEGSQTDYEG-CLSLPGKQGKVTRPYKVVAKALNEKGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I+ + LLA  + HELDHL+G+LF+D + + K
Sbjct: 120 EVEIHGEALLARAICHELDHLDGVLFMDKVVKGK 153


>gi|312129572|ref|YP_003996912.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311906118|gb|ADQ16559.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 193

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 15/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++ +   IL++    IEK   ++  LI +M E M + +G GLA+ QIG+  RL ++
Sbjct: 1   MKRPILAYGHSILKQKCNDIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60

Query: 62  D---------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D                 +        +FIN KII  S +     EGCLSIP+    VKR
Sbjct: 61  DSKTTFENLDEQDQGIYFEKNDSGIKEIFINAKIIERSAELWEDDEGCLSIPELSQKVKR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              IT+ Y + + + Q     G  A  +QHE DH  GIL++D+L  
Sbjct: 121 PWTITIAYYNKDFELQRKTFSGTTARMIQHEYDHTEGILYLDYLKP 166


>gi|291536618|emb|CBL09730.1| peptide deformylase [Roseburia intestinalis M50/1]
          Length = 158

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+L +  R I ++   I  LID+ML+ MY  +G+GLA  Q+GVL R+VV
Sbjct: 1   MALRTIRIQGDPVLTKKCREINEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S + +  +  CLS+P     V R  ++  R  D N +
Sbjct: 61  IDIGEG-----PVVMINPVILEKSGEQTGDEG-CLSLPGKAGTVTRPNYVKARAFDENME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I    L+A  + HELDHL+G ++ +
Sbjct: 115 EYEIEGTELMARAICHELDHLDGHMYTE 142


>gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110800596|ref|YP_696318.1| polypeptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168207151|ref|ZP_02633156.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|168213602|ref|ZP_02639227.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|169342870|ref|ZP_02863901.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|23396560|sp|Q8XJX0|DEF2_CLOPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110675243|gb|ABG84230.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|169299127|gb|EDS81199.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170661437|gb|EDT14120.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170714896|gb|EDT27078.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
          Length = 155

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D    +N  V INP++   S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGD---GENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii]
          Length = 185

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PD +LR  ++ +  I+ ++ N+   M+ +M    G+GLAA Q+G+   + V+   
Sbjct: 22  EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVVR-- 79

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + SVY+EGCLSIP    D+ R   ITV   D N +   I
Sbjct: 80  -ENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 138

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  LLA  +QHE+DHL G+LFID+     R+ + K   K  +L
Sbjct: 139 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 182


>gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 170

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---- 63
             D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+       
Sbjct: 1   MGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRSE 60

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      V INP I   SD+     EGCLS+P  R  V R   +     D + Q  
Sbjct: 61  RYPDAPAVPKTVLINPTIEPLSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              A+G  A  +QHE DHL GIL+   +    R
Sbjct: 121 DRIAEGFHARVVQHECDHLQGILYPMRVRDFTR 153


>gi|304316976|ref|YP_003852121.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778478|gb|ADL69037.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 159

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL + ++ +EKI+  I+ ++D+M E MYS DG+GLAA QIG+L RLVV
Sbjct: 1   MALRYIRKIGDPILYKKAKHVEKIDDHILMILDDMAETMYSADGVGLAANQIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          +    I   +   + QEGCLS+P+  A+VKR   I V+Y D N  
Sbjct: 61  VDVGDGLIE------LINPEIILEEGEQIGQEGCLSVPNVTAEVKRPKKIKVKYQDRNGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            + I  +  LA  L HE+DHLNG+LF+D   R+  +   KK
Sbjct: 115 IREIEGEDFLARALSHEIDHLNGVLFVDKAIRIINEDDEKK 155


>gi|86609579|ref|YP_478341.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558121|gb|ABD03078.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 174

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L    DPIL +V+ P+ +     + +LI+ ML  +    G+GLAA Q+G L +++
Sbjct: 1   MTFR-LRQLGDPILTQVAEPVTEFKTPALQDLIEGMLATLKEAQGVGLAAPQVGSLLQVL 59

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++          A +  P+V +NP+++  S +  +  EGCLS+P+ R  V R+  + V Y
Sbjct: 60  IVASRPNPRYPEAPQMQPLVMVNPRLLACSSEQVLGWEGCLSVPNCRGLVARAREVEVEY 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
                  Q +      A   QHE DHL G +F+  
Sbjct: 120 YTPEGVQQRVVWQDFPARIFQHEYDHLMGRVFLQR 154


>gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 183

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILRR S  +   + ++  ++    ++ Y + GIGL+A Q+ +  R++V +  
Sbjct: 4   KIVKYPDPILRRRSE-VTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNAL 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               ++          I       +              V+R + +++ Y D N    + 
Sbjct: 63  YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFGIEGKVERPSIVSISYYDINGYKHLK 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID  +++ +  +  K+++L++
Sbjct: 123 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 165


>gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540 [Aureococcus anophagefferens]
          Length = 181

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +  +P P+LR     I   + D       M+ +MY  DG+GLAA Q+G+  R  V + 
Sbjct: 13  LTITEYPMPVLRGPCADIVDFDDDFKQTCKEMMSIMYQADGVGLAATQVGLWKRFFVYNP 72

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCL---SIPDYRADVKRSAFITVRYMDCNAQ 120
                 K     +    IT   + +  +E         +    ++RS  I V Y+D   +
Sbjct: 73  TGDRLMKPYERIVVNPRITKYGEATADEEEGCLSSRSENCAGVIRRSLDIWVEYVDERNK 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +     G  A   QHE DH+ G+L ID LS   R  +  ++ ++V
Sbjct: 133 KRTKKLSGFEARVFQHEYDHIEGVLHIDRLSPEDRAKVEPELERMV 178


>gi|225018470|ref|ZP_03707662.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum
           DSM 5476]
 gi|224948779|gb|EEG29988.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum
           DSM 5476]
          Length = 150

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + L    DPILR+  R +E+++  I  L+D++ + MY+  +G GLA  Q+G+L RLV
Sbjct: 1   MAIRNLRFTDDPILRKRCREVEQVDDKIRTLLDDLADTMYNTENGGGLATCQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +      I    +          EGCLS P+    V R   +TV  +D N 
Sbjct: 61  VIDVGTGLLKLVNPKIIETSGL------QERLEGCLSFPNQWGKVLRPQKVTVEALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  II  +  LA CL HE+DHL+G++F+D +
Sbjct: 115 EEIIITGEDQLAQCLCHEIDHLDGVVFVDKV 145


>gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
 gi|254767580|sp|B8E0X7|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
          Length = 153

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 6/148 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +    DPIL+  ++ +EKI+  + NL+ +M+E M  ++G+GLAA Q+G   R++V+
Sbjct: 1   MIMEIRKIGDPILKIKAKKVEKIDEKVKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D +++         +               EGCLS+P     +KR+  I  +  D   + 
Sbjct: 61  DYEENPIAFINPEILEMDGEVLDY------EGCLSVPGVEVPIKRAERIIFKAQDLQGRT 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149
           +   A GLLA  +QHE+DHL GIL +D 
Sbjct: 115 KRYKAKGLLARVIQHEVDHLEGILILDR 142


>gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551]
          Length = 157

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  LV  P+ +L +    ++  ++ +  L++ M ++M   DG+GLAA Q+GVL ++ V
Sbjct: 1   MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +    + +   +I       +  EGCLS P    DV R+ ++ V   +   +
Sbjct: 61  VDVDDRHGK----IELINPVIIEQRGEQIGPEGCLSFPGLFGDVARADYVKVHAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A G LA  +QHE+DHL+G+LF + +++
Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148


>gi|218680973|ref|ZP_03528870.1| peptide deformylase [Rhizobium etli CIAT 894]
          Length = 164

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+      +  L D++L  M +  G+G+ A  IGVL R+ V
Sbjct: 1   MPIRPILHYPHPALKTVCAPVSDFGPSLAELADDLLATMRAAPGVGITAAHIGVLSRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP+I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKAFGVR---LYVNPEITWFSKETMNHAEGSVSMPGATDEVIRPRAIRFRYQDGAGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                A+G  A C+QHE+D L+GI ++  LSRL+RD + KK  K   
Sbjct: 118 VHEEAAEGFHAICIQHEVDQLDGIFWLQRLSRLRRDRLVKKWEKAQN 164


>gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   ++ +E     +  I  +ID+M++ M +  G+GLAA QIG+  R++V+
Sbjct: 90  EIVKAGDPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRIIVL 149

Query: 62  DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +        +                  +NPK+    +  + + EGCLS+  +RA V+R 
Sbjct: 150 EDTKEYISYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVVERH 209

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V  +  N +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 210 LQVEVTGLSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKMVP 254


>gi|323705507|ref|ZP_08117082.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535409|gb|EGB25185.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 158

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL + ++ ++KI+  ++ ++D+M E MY+ DG+GLAA QIG+L RLVV
Sbjct: 1   MALRYIRKIGDPILYKKAKYVDKIDDHVIMILDDMAETMYNADGVGLAANQIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          +    I   +   + +EGCLS+P+   +VKR   + VRY D   +
Sbjct: 61  VDVGDGLIE------LINPEIILEEGEQIGKEGCLSVPNVTGEVKRPKKVRVRYQDRTGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           ++ +  +  LA  L HE+DHLNGILF++   R+
Sbjct: 115 YKELEGEDFLARALSHEIDHLNGILFVNKAIRI 147


>gi|288817783|ref|YP_003432130.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787182|dbj|BAI68929.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751381|gb|ADO44864.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 168

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M +  ++ +PD  L+  S+ +          +++++  M S+   +G+AA Q+ V  R++
Sbjct: 1   MRRLEILKYPDERLKIPSKEVSDFGKFFSEFLESLVFTMRSSPGCVGIAAPQVNVHKRVI 60

Query: 60  V----IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V    I         + ++ +   II   +   V +EGCLS+PDY  +VKR  +I V  +
Sbjct: 61  VVDTSISKHKENKLSHGLLVLVNPIILQREGEIVIREGCLSVPDYTGNVKRHYWIKVSAL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D          +G  A  +QHE+DHL+G +F++ L   K ++  +K+ +
Sbjct: 121 DVKGNPVEFETEGFEAVVIQHEIDHLDGKVFLERLVSPK-ELFKRKVYR 168


>gi|226950032|ref|YP_002805123.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226843262|gb|ACO85928.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
          Length = 178

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+  I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDGITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + +     +        +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300]
 gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300]
          Length = 216

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 28/196 (14%)

Query: 1   MV----KKPLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGL 47
           M       P+ ++ DP+LRR +RP++  +           +  + + MLE M+   G+GL
Sbjct: 1   MAEAPRVYPIRLYGDPVLRRKARPLQATDTLTVPGFGPQSVREVANTMLETMFEARGVGL 60

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQE 92
           AA Q+G+  R+ V    +    +     +  K                I    D S  + 
Sbjct: 61  AAPQVGLPVRMFVAVEYEDDEEEQEGRDVPLKSRVLREFVMLNPVLTVIDKKKDRSYQEG 120

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                  Y   V R+  + VRY D + Q + + AD  LA   QHE DHL+G+ F+D L  
Sbjct: 121 CLSIPGIYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRLPP 180

Query: 153 LKRDMITKKMSKLVQL 168
              +   K+++ + + 
Sbjct: 181 EVTEDHRKELAAMQRQ 196


>gi|325680310|ref|ZP_08159870.1| peptide deformylase [Ruminococcus albus 8]
 gi|324108019|gb|EGC02275.1| peptide deformylase [Ruminococcus albus 8]
          Length = 155

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +  +P+EK +  +   +D+M E +   +G+GLAA Q+ +L R  +
Sbjct: 1   MAVRKILNKSDETLHKKCKPVEKFDEKLWTWLDDMRETLAQANGVGLAAPQVAILRRFCI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    +     INP+I   S++     EGCLS P+    V R   +  +  D N +
Sbjct: 61  IDVGDGKVYE----LINPEITWKSEETQYVLEGCLSCPNEWGYVTRPKSVKFKAQDRNGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +    L A  + HE  HL+G LF +
Sbjct: 117 WYEMEVSDLFAQAVCHETAHLDGHLFTE 144


>gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
 gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
          Length = 267

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 29/179 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN--------SDIMNLIDNMLEVMYSTDGIGLAAVQI 52
           M   P+VI  DP+L   +  + + +         +    I +M E M    G+GLA  Q+
Sbjct: 45  MTVLPIVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQV 104

Query: 53  GVLYRLVVIDLQDHAHRKNPMV---------------------FINPKIITFSDDFSVYQ 91
           GV  RL V    D                                  +I     D    +
Sbjct: 105 GVAKRLFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYEDE 164

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           EGCLS+P Y     R+ +  V  +D N +   +   G  A CLQHE+ HL+G L+ D L
Sbjct: 165 EGCLSVPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTL 223


>gi|170761101|ref|YP_001787941.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408090|gb|ACA56501.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 178

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I N+ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKNLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D  + + P++ INPK +         +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I---DLRNGQEPIILINPKFLKKIGK-EESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|187778789|ref|ZP_02995262.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC
           15579]
 gi|187772414|gb|EDU36216.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC
           15579]
          Length = 178

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I+++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAVREILQVGDKTLKRVSKKVECIDDEIKGIIEDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D  +R+ P++ INPK +         +  CLS P Y   V R   + +  ++   +
Sbjct: 83  I---DLRNRQEPIILINPKFLKRIGKEESQEG-CLSYPGYEGIVIRPRRVVIIGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|218661137|ref|ZP_03517067.1| peptide deformylase [Rhizobium etli IE4771]
          Length = 184

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L+ V  P+   +  +  L D++L  M +  G+G+ A  IGV  R+ V
Sbjct: 21  MPVRPILRYPHQGLKTVCAPVTAFDDSLAALADDLLATMRAAPGVGITAAHIGVSLRVTV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    ++NP+I   S +  ++ EG +S+P    +V R   I  RY D + +
Sbjct: 81  LELDKTDGVRL---YVNPEITWQSQETMIHTEGSVSMPGATDEVTRPRAIRFRYQDADGK 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 138 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 181


>gi|307692359|ref|ZP_07634596.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 167

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +  L +V  P+ K +  + +LID+M E +    G+GLAA Q+G+L R+V+
Sbjct: 1   MAIREILTRGESALTKVCHPVTKFDQKLWDLIDDMKETLAEAGGVGLAAPQVGILRRVVI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +  +     +          I          EGCLS+P     VKR  ++ V+  D   +
Sbjct: 61  VINEADEVLELVNPE-----IVAQQGEQDGLEGCLSVPGLWGFVKRPEWVKVKAQDRFGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                  GL A C  HEL HL+G L+ +   +L
Sbjct: 116 EYEAEGTGLTARCFCHELAHLDGHLYTELTDKL 148


>gi|169333675|ref|ZP_02860868.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259669|gb|EDS73635.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM
           17244]
          Length = 174

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 12/172 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D ILR+ S+ ++KI    + LID+M E MY   G+GLAAVQ+GVL R+V 
Sbjct: 1   MALRTIRITGDEILRKTSKEVKKITPRTLELIDDMFETMYDAQGVGLAAVQVGVLRRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+II  S++  +  EGCLS+P  +    R   + V+ +D +  
Sbjct: 61  IDVGDG-----PVVLINPEIIYKSEEEYLEAEGCLSVPGEQGYTYRPEEVRVKALDRDGN 115

Query: 121 HQIIY-ADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKKMSKLVQLRD 170
            +II   D   +  + HEL+HL+GIL+ D  ++  K     +++ ++++ R+
Sbjct: 116 ERIIESKDRFFSKAICHELEHLDGILYTDKTVTPTK-----EQIDEIIKQRE 162


>gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 182

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62
           P+     P+LR+ +  +E +   +   LI+ M+  +    G+G+AA QI    R+ ++  
Sbjct: 10  PIAQLGHPVLRQRATEVENVLADECQQLINQMMFAVSEAGGVGIAAPQIHHSVRMFIMCS 69

Query: 63  ----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                   A    P   INP+I+ +S D     EGCLS+P  R  V R + ITVRY+D  
Sbjct: 70  KPNARYPDAPLMAPTAIINPEILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQ 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              Q     G +A   QHELDHLNG+ FID L  
Sbjct: 130 GNKQQQELTGFIARIFQHELDHLNGLTFIDQLES 163


>gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
 gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
          Length = 178

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  K  ++   + +L++ +  IE IN  +I  LID+++  +  ++G+G+AA Q+    RL
Sbjct: 1   MTGKSSIIQLGNLLLQQKATEIEAINDREIQQLIDHLITTVAQSNGVGIAAPQVAQSLRL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++  + +    +     P   INPKI+ +  + +   EGCLS+P  R  V R   I V 
Sbjct: 61  FIVASRPNPRYPHAPEMEPTPMINPKIVGYGTEITKGWEGCLSVPGIRGLVPRYERIQVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y D N   Q       +A   QHE DHL G++F+D +   +  +   +  KL+  R
Sbjct: 121 YTDRNGNFQKQELVNFVARIFQHEYDHLEGLVFLDRVESPQDLISEAEYQKLMNQR 176


>gi|126649676|ref|ZP_01721912.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593395|gb|EAZ87340.1| peptide deformylase [Bacillus sp. B14905]
          Length = 176

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +++ L+D++ + M   DG+G+AA QI +  R+ +
Sbjct: 13  MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +          +NP +I         +  CLS P    +V+R +++ +   D   +
Sbjct: 73  VELGEERDIL---EMVNPTVIETDGAEIDIEG-CLSFPGLYGEVERPSYVKIEACDREGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A G  A  + HE+DHL+G+LF    S++KR +  +++ ++    +
Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKRVITAEELEEMYANEE 175


>gi|113478377|ref|YP_724438.1| peptide deformylase [Trichodesmium erythraeum IMS101]
 gi|110169425|gb|ABG53965.1| peptide deformylase [Trichodesmium erythraeum IMS101]
          Length = 177

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +    + ILR  ++ +  I + ++  LIDN++  +  T+G+G+AA Q+ +   L 
Sbjct: 1   MEVLQVAQLGNKILRYQAQTVNNILDQNVQQLIDNLIFTVIETNGVGIAAPQVSISDCLF 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +I         +A +  P+  INP++I+ S+D     EGCLSIP  R  V R   I V Y
Sbjct: 61  IIASRPNIRYPNAPKMEPIAMINPRLISHSEDRVKGWEGCLSIPGIRGLVPRYRVINVEY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170
            +   + +       +A   QHE DHL G++F+D +      +   +  K ++QLR+
Sbjct: 121 TNREGKLERQELTDFVARIFQHEYDHLEGLVFLDRVESTTDLITEDEYQKQIIQLRN 177


>gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 159

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  R +EK+   I  LID+M + MY   G+GLAA Q+G+L ++VV
Sbjct: 1   MALRQIRTQGDDILTKECRKVEKMTPKIRELIDDMFDTMYEAYGVGLAAPQVGILKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID           + +    I  +      +EGCLS+P     V R  ++ VR  D + Q
Sbjct: 61  IDTTGEDP-----IVLINPEIIETSGSQTGEEGCLSVPGMSGVVTRPNYVKVRAFDEDMQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
             I+  + LLA  + HE DHL+G L+ +
Sbjct: 116 EFILEGEELLARAICHETDHLHGRLYTE 143


>gi|229541139|ref|ZP_04430199.1| peptide deformylase [Bacillus coagulans 36D1]
 gi|229325559|gb|EEN91234.1| peptide deformylase [Bacillus coagulans 36D1]
          Length = 161

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+   +V +P  IL    + +    S +  ++D M E M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MM--EIVKYPAAILEEKCKRVTAFGSSLKAVLDEMYETMLEADGVGLAAPQVGINQQIAV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D   R +    +    I          EGCLS P     V R+ ++ V+  D N +
Sbjct: 59  IDTGDGTGRID----LINPKIVTRRGEQTDVEGCLSFPGVYGTVSRAHYVKVKAQDANGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I A+  LA  LQHE+DHL+G+LF   +
Sbjct: 115 AFTIEAEDFLARALQHEIDHLHGVLFTSKI 144


>gi|297564644|ref|YP_003683616.1| peptide deformylase [Meiothermus silvanus DSM 9946]
 gi|296849093|gb|ADH62108.1| peptide deformylase [Meiothermus silvanus DSM 9946]
          Length = 195

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DP+LR+ +  ++   S+I  L +NM E M+   G+GLAA Q+G   RL V 
Sbjct: 1   MIYPIRLYGDPVLRKRASSVKDF-SEIPRLAENMFETMFEARGVGLAAPQVGRSERLFVF 59

Query: 62  DLQD-------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                                KN  V +NP I   +      +        Y  +V R  
Sbjct: 60  AEYVDAEDEEEGEEADLKTRVKNQWVMVNPAITYRAGQQISTEGCLSIPGLYSDEVPRDL 119

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            I V Y +   + +    +G LA  +QHELDHL+G LF + L +  +    ++
Sbjct: 120 QIRVEYQNELGEKKTQEFEGYLAVVVQHELDHLDGTLFFERLPKDLKAAFLEE 172


>gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38]
 gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38]
          Length = 195

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + +P+LR+V   I     ++   I NM E MY   G+GLAA Q+G+  RL ++
Sbjct: 1   MILPIYGYGEPVLRKVGEDISPEYPNLKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIV 60

Query: 62  DLQDHA------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +  +             +     FIN KII    D   + EGCLSIPD R DV R   
Sbjct: 61  DTEPFSDSDDVSKEEAALMKDFKKTFINAKIIKEEGDVWGFNEGCLSIPDVREDVFRHDT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           IT+ Y D +   +    DGL+A  +QHE DH+ GILF DH+S 
Sbjct: 121 ITIEYFDEDFNKKTEVYDGLIARVIQHEYDHIEGILFTDHISS 163


>gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 179

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L RV+ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I     +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPEAEAVPQTILLNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D +       A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPDGLPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10]
          Length = 190

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F D +LR+  + I K   D+  LI NM + M S  GIGLAA Q+G+  RL ++
Sbjct: 1   MILPIRAFGDAVLRKHCQEITKDYPDLDELIANMFDTMNSAHGIGLAAPQVGLDIRLFIV 60

Query: 62  DLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           DL                +    V IN KI+  + +   + EGCLSIPD R DVKR   I
Sbjct: 61  DLSPLAEDEDYADIADELKDFKKVLINAKILEETGEEWKFNEGCLSIPDIREDVKRKETI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + Y D N          + A  +QHE DH+ GILF DHLS 
Sbjct: 121 VIEYYDENFVKHTDTFSDMRARVIQHEYDHIEGILFTDHLSS 162


>gi|160900287|ref|YP_001565869.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160365871|gb|ABX37484.1| peptide deformylase [Delftia acidovorans SPH-1]
          Length = 179

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+ + +  ++  L+ ++L+ M++ +G GLAA QIGV  ++V
Sbjct: 1   MTVRTILKMGDPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V            A      V INP I    +D  +  EGCLS+P  R  V R   I   
Sbjct: 61  VFGSGLPNPRYPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DHL G L+   +   
Sbjct: 121 GFDVFGDAIDRTVDGFHARVVQHECDHLWGKLYPMRMRDF 160


>gi|313905223|ref|ZP_07838591.1| peptide deformylase [Eubacterium cellulosolvens 6]
 gi|313469976|gb|EFR65310.1| peptide deformylase [Eubacterium cellulosolvens 6]
          Length = 173

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 5/150 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+L +V +P+ K++  +  L+ +M + MY   G+GLAA Q+GVL R+ V
Sbjct: 1   MAIRTIRTEGDPVLEKVCKPVAKMSLRMKILVKDMFDTMYDACGVGLAAPQVGVLRRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+       +P VF+NP+II  S + +  +  CLSIP     V R  ++ V+  D N +
Sbjct: 61  IDVDGE----HPYVFVNPEIIEMSGEQTGDEG-CLSIPGMTGTVTRPDYVKVKAFDINME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A GLLA    HE +HL+G+L+  H+
Sbjct: 116 PFELEATGLLARACCHEFEHLDGVLYTCHV 145


>gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942]
 gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942]
          Length = 160

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKPIVTHPAEVLETPAEAVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R   +  INP+I+      +  +  CLS PD   +V R  ++ V+  +   +
Sbjct: 61  VDIGEESGR---IDLINPEILESGGKQTGIEG-CLSFPDLYGEVTRPDYVKVQAYNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFVFEATGFLARAVQHEMDHLDGVLFTSKVSK 148


>gi|6225247|sp|O31410|DEF2_BACST RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide
           Deformylase Complexed With Antibiotic Actinonin
 gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus
           stearothermophilus]
          Length = 184

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  R++ + + D           NPKI++ S         +       D    V 
Sbjct: 63  APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVL 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F D ++ 
Sbjct: 123 RYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169


>gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 179

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D + Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 179

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      + ++  LID+M + M S  G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFEHSERYPDAEAVPQTILINPLITPLSPLMEEGFEGCLSVPGLRGAVDRYQQIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D   +  +  A G  A  +QHE DHL G L+   ++   +
Sbjct: 121 GVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1]
 gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1]
          Length = 176

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   +  +PD IL++  + ++  +   +   +D M + MY  DG+GLAA QIG+ YR++V
Sbjct: 1   MTYEIRTWPDKILKQKMKEVDFFSDGKLKEYVDVMFKKMYELDGVGLAANQIGIPYRIIV 60

Query: 61  ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ID    ++   +   +V INP+I+    +    +  CLS P  +  + R+  + V+  D 
Sbjct: 61  IDTTVREEEGEKGVKLVLINPQIVEKEGEIESTEG-CLSFPGVQITIPRAERVKVKAKDI 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N     I     L+  LQHE+DH+NGI FI++L  +K+ M+ +K  K  +
Sbjct: 120 NGNDIEIEGKDFLSVVLQHEIDHINGIPFINYLPPVKKRMVLEKYMKSRK 169


>gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
 gi|254767576|sp|B8G5R5|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
          Length = 188

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 22/186 (11%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   D     IL+   RP++  + ++  L+ +M E M++ +G+GLAA QIG+  
Sbjct: 1   MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMHAANGVGLAAPQIGIPI 60

Query: 57  RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +L +I++      +            P V INP+I+  S +  +  EGCLS+P +   V 
Sbjct: 61  QLCIIEIPPEYEEQPDGSLIEVNPAEPYVLINPRIVKTSGEEIMRDEGCLSLPGWYGMVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R  ++TV + D + +H  +   DGLL   +QHE+DHL+GILF + +  L        +  
Sbjct: 121 RQTWVTVEFQDLSGKHHRLRRADGLLGWAIQHEVDHLHGILFTERIRDL------STLRD 174

Query: 165 LVQLRD 170
           + + R+
Sbjct: 175 ITKERE 180


>gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09]
          Length = 163

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 9   FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----D 62
             +PIL + +  +EK +  +I  LI +M++ M    G GLAA Q+G   +LV+      +
Sbjct: 1   MGNPILLKEAEKVEKFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKNE 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      V INP I   + +     EGCLS+P  R  V R   I  +  D      
Sbjct: 61  RYPEAEEVPFTVLINPVITPLNQEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               +G  A  +QHE DHL GIL+   +  +K
Sbjct: 121 DRDVEGFHARVVQHECDHLFGILYPSRIEDMK 152


>gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 179

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E ++S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|237750767|ref|ZP_04581247.1| polypeptide deformylase [Helicobacter bilis ATCC 43879]
 gi|229373857|gb|EEO24248.1| polypeptide deformylase [Helicobacter bilis ATCC 43879]
          Length = 171

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+ ILR +S+ ++  ++ +   +D+M E M   +G+GLAA+Q+    R+++I
Sbjct: 1   MVLEVIHYPNKILRTISKEVQVFDNALHEFLDSMYETMMEHNGVGLAAIQVAKPLRVLII 60

Query: 62  DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++               I   +I  ++   ++ EGCLS+P +  +V R + I V+Y D  
Sbjct: 61  NIPREEDNTQYKEDLLEIINPVILHAEGEILWNEGCLSVPGFYEEVSRFSQIKVKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                   +  +A  LQHE+DHLNGILF+D L
Sbjct: 121 GVTHENIFNDFMAVALQHEMDHLNGILFVDKL 152


>gi|226949660|ref|YP_002804751.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226844106|gb|ACO86772.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|322806631|emb|CBZ04200.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 150

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|17433051|sp|Q9FV53|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1;
           Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia
           pneumoniae genome gb|AE001687 [Arabidopsis thaliana]
 gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana]
 gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana]
          Length = 259

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R++V+
Sbjct: 72  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 131

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +         P              MV +NP +   S+  +++ EGCLS+  +RA V+R 
Sbjct: 132 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 191

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 192 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 236


>gi|168180757|ref|ZP_02615421.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182668503|gb|EDT80482.1| peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 150

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCL+IP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLNIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|312111833|ref|YP_003990149.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
 gi|311216934|gb|ADP75538.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
          Length = 185

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 1   MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45
           M+   K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GI
Sbjct: 1   MMITMKNIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGI 60

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRA 102
           GLAA QI V  R++ + + D           NPKI++ S         +       +   
Sbjct: 61  GLAAPQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPG 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R A ITV     + +   +   GL A   QHE+DHLNGI+F DH+  
Sbjct: 121 YVPRYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 170


>gi|148380240|ref|YP_001254781.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|153933663|ref|YP_001384545.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153937608|ref|YP_001388061.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|148289724|emb|CAL83829.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929707|gb|ABS35207.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152933522|gb|ABS39021.1| peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 150

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLSIP+    V R A +TV+ ++ + 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGRVIRPAKVTVQALNEDG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|138894591|ref|YP_001125044.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247801|ref|ZP_03146503.1| peptide deformylase [Geobacillus sp. G11MC16]
 gi|134266104|gb|ABO66299.1| N-formyl-methionyl-aminoacyl-tRNA deformylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212585|gb|EDY07342.1| peptide deformylase [Geobacillus sp. G11MC16]
          Length = 184

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLA 48
             K ++    P LR+V+ P+    S+     + +L+D         M        GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVPLPASEEDKRILQSLLDYLKMSQDPEMAAKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  R++ + + D           NPKI++ S         +       D    V 
Sbjct: 63  APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F DH++ 
Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHINP 169


>gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 179

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|229815473|ref|ZP_04445805.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM
           13280]
 gi|229809006|gb|EEP44776.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM
           13280]
          Length = 178

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP LR+    +E+INSD+  L++ M   M+   G GLAA Q+G   +L +
Sbjct: 1   MEINGIVLSPDPRLRQECAEVEEINSDLRALVERMKVQMFENGGCGLAAPQVGETIQLAI 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D         +P V INP I+  SD+   Y EGCLSIP    +++R   + V   +   
Sbjct: 61  VDTEYTSEKDYDPYVLINPVIVEQSDNLVPYNEGCLSIPGINCEIRRPDHVVVEAYNLEG 120

Query: 120 QHQIIYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +     A G L   CLQHE+DHL+G    + L   +R    ++  
Sbjct: 121 ECIRYEAAGDLFCVCLQHEIDHLHGKTMFERLLPQQRMHAMRQYQ 165


>gi|268680776|ref|YP_003305207.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618807|gb|ACZ13172.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
          Length = 171

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++++P+ ILR  SR +   ++ +  L+D+M E M + +GIGLAA+QIGV    ++I
Sbjct: 1   MIREILVYPNKILRETSRDVIHFDATLHELLDDMYETMITKEGIGLAAIQIGVAQNALII 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L D    +           +I   D  +VYQEGCLS+P Y  +V R+  I +R+ D   
Sbjct: 61  NLVDETGLQKKENLYEIINPVILEKDGSTVYQEGCLSVPGYYDEVTRAEHIKLRFYDRMG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                    L+A  +QHE+DHL G LFI+ LS L
Sbjct: 121 VMHEEEFRDLMAIAVQHEMDHLKGHLFIEKLSYL 154


>gi|317056476|ref|YP_004104943.1| peptide deformylase [Ruminococcus albus 7]
 gi|315448745|gb|ADU22309.1| peptide deformylase [Ruminococcus albus 7]
          Length = 155

 Score =  104 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +V RP+EK +  +   +D+M E +   +G+GLAA Q+ +L R  +
Sbjct: 1   MAVRNILNKSDETLHKVCRPVEKFDEKLWTWLDDMKETLAQANGVGLAAPQVAILRRFCI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    +     INP+I   S++     EGCLS P     V R   +  +  D N +
Sbjct: 61  IDVGDGNVYE----LINPEITWKSEETQRVLEGCLSCPGQWGYVTRPMSVKFKAQDRNGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +    L A  + HE  HL+G LF +
Sbjct: 117 WYEMEVSELFAQAVCHETAHLDGHLFTE 144


>gi|257414230|ref|ZP_04745678.2| peptide deformylase [Roseburia intestinalis L1-82]
 gi|257200762|gb|EEU99046.1| peptide deformylase [Roseburia intestinalis L1-82]
 gi|291541040|emb|CBL14151.1| peptide deformylase [Roseburia intestinalis XB6B4]
          Length = 163

 Score =  104 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+L +  R I ++   I  LID+ML+ MY  +G+GLA  Q+GVL R+VV
Sbjct: 6   MALRTIRIQGDPVLTKKCREITEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S + +  +  CLS+P     V R  ++     D N +
Sbjct: 66  IDIGEG-----PVVMINPVILEKSGEQTGDEG-CLSLPGKAGTVTRPNYVKAHAFDENME 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I    L+A  + HELDHL+G ++ +
Sbjct: 120 EYEIEGTELMARAICHELDHLDGHMYTE 147


>gi|331004325|ref|ZP_08327800.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411391|gb|EGG90806.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 169

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + ++ +N     LI++M++ M   +G+GLAA QIGVL R+VV
Sbjct: 1   MAIRAIRVIGDSVLNKKCKEVKAVNDRTKVLIEDMIDTMREANGVGLAAPQIGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+++           +   +I          EGCLS+P     VKR   + V+  D +  
Sbjct: 61  IEIEPENV-----YVLINPVILEQYGEQEGYEGCLSVPGKSGIVKRPNHVKVKAFDIDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HE  HL G L++D
Sbjct: 116 EYTLEGEGLLARAICHECAHLEGELYVD 143


>gi|257871146|ref|ZP_05650799.1| formylmethionine deformylase [Enterococcus gallinarum EG2]
 gi|257805310|gb|EEV34132.1| formylmethionine deformylase [Enterococcus gallinarum EG2]
          Length = 163

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR  +P+  I  +++ L+++M E M + DG+G+AA QIG   ++ ++
Sbjct: 1   MRYPIIIHPDDQLRRKPKPVSMITDELVQLLEDMYETMVAHDGVGIAAPQIGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +    +     INP+II  S +    +  CLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVDEEDRFE----LINPEIIESSGESVDVEG-CLSIPHTYGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA  +QHE+DHLNG+LFID +
Sbjct: 116 MEVQAFGYLARAIQHEIDHLNGVLFIDKM 144


>gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363152|sp|Q886I1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
          Length = 179

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D + Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|284045178|ref|YP_003395518.1| peptide deformylase [Conexibacter woesei DSM 14684]
 gi|283949399|gb|ADB52143.1| peptide deformylase [Conexibacter woesei DSM 14684]
          Length = 167

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + +  F DP+L+  +  + + + D+   I  M E+M    GIGLAA Q+G L R++V  
Sbjct: 1   MRYVRQFGDPVLKSRAMTVSRFDDDLREQIRGMGEIMNDAFGIGLAATQLGKLNRVLVYR 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           ++  +     +  +NP++    D+    +EGCLS+     DV+R   + VR  D      
Sbjct: 61  VEQDSPA---IALVNPELEWSGDELETAEEGCLSLRGVLVDVERPVHVRVRAQDEQGSTV 117

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           II A GL A  +QHE+DHL+G+L +D  SR +R    + + + 
Sbjct: 118 IIEASGLEARVIQHEMDHLDGVLILDRTSRDQRKQAMRALREQ 160


>gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 179

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D + Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115]
 gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF)
           [Deinococcus deserti VCD115]
          Length = 220

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 24/189 (12%)

Query: 3   KKPLVIFPDPILRRVSRP--------IEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DP+LRR +RP        +   +   +  + D MLE M+   G+GLAA Q+G
Sbjct: 10  IYPIRLYGDPVLRRKARPLQHTDMLTVPGFDPQTVRQVADTMLETMFEARGVGLAAPQVG 69

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQEGCLSIP 98
           +  R+ V    +    +N       K                +    D S  +       
Sbjct: 70  LPVRMFVAVEYEDDEEENEGQDTPLKSRVLREFVMLNPVLSVLDKKKDRSYQEGCLSIPG 129

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Y   V R+  I VRY D +   + I AD  LA   QHE DHL+GI F+D L     +  
Sbjct: 130 IYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRLPPEVTEDY 189

Query: 159 TKKMSKLVQ 167
            +++  + +
Sbjct: 190 RRELLAMQR 198


>gi|56419592|ref|YP_146910.1| peptide deformylase [Geobacillus kaustophilus HTA426]
 gi|261419255|ref|YP_003252937.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297530776|ref|YP_003672051.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|319766070|ref|YP_004131571.1| peptide deformylase [Geobacillus sp. Y412MC52]
 gi|56379434|dbj|BAD75342.1| peptide deformylase2 (PDF 2) N-formylmethionylaminoacyl-tRNA
           deformylase [Geobacillus kaustophilus HTA426]
 gi|261375712|gb|ACX78455.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297254028|gb|ADI27474.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|317110936|gb|ADU93428.1| peptide deformylase [Geobacillus sp. Y412MC52]
          Length = 184

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+++ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKIAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  R++ + + D           NPKI++ S         +       D    V 
Sbjct: 63  APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F D ++ 
Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169


>gi|220926453|ref|YP_002501755.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219951060|gb|ACL61452.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 165

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+ +PDP LR+ + P    +  +  +  ++ E + +   IGL A   G+  R+ V
Sbjct: 1   MTILSLLRYPDPRLRQPAPPAALPDPGVSAVAADLAETLAAHGAIGLTAPHAGLPVRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L   A       ++NP+++  S + + ++EG +++P    +V+R A + VR+ D +  
Sbjct: 61  IRLGPDAPLAT---YVNPEVVWASSETARHREGSVAMPGVDEEVERPARVRVRFQDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G LA CLQHE+D L+G+ + + LSRLKR+ + K+  K+ + 
Sbjct: 118 PRQIAAEGFLAACLQHEIDQLDGVFWTERLSRLKRERLLKRFGKVQRG 165


>gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 176

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP++   DP L + ++ IE+ +   +  L+ +M + M + +G GLAA QIG+  ++V+
Sbjct: 1   MIKPVLKMGDPRLLQPAQRIEQFDTPVLKELLQDMQDTMAALNGAGLAAPQIGISLQVVI 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                             V INP +   +++     EGCLSIP  R  V R   +  + +
Sbjct: 61  FGIEHSPRYPDVESVPFTVLINPILTPLTEEQEEDWEGCLSIPGMRGLVPRYTHLRYQGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D  A        G  A  +QHE DHLNGIL+   ++ L++
Sbjct: 121 DETATPIDRTVAGFHARVVQHECDHLNGILYPMRINDLRK 160


>gi|270692640|ref|ZP_06222945.1| peptide deformylase [Haemophilus influenzae HK1212]
 gi|270316024|gb|EFA28060.1| peptide deformylase [Haemophilus influenzae HK1212]
          Length = 132

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 3/134 (2%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M + MY   GIGLAA Q+ +L R++ ID++     +     +    I  S+  +  +EGC
Sbjct: 1   MFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQNQF---VLINPEILASEGETGIEEGC 57

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LSIP +RA V R   +TVR +D + +   + ADGLLA C+QHE+DHLNGILF+D+LS LK
Sbjct: 58  LSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 117

Query: 155 RDMITKKMSKLVQL 168
           R  I +K+ K  + 
Sbjct: 118 RQRIKEKLLKYKKQ 131


>gi|262368804|ref|ZP_06062133.1| peptide deformylase [Acinetobacter johnsonii SH046]
 gi|262316482|gb|EEY97520.1| peptide deformylase [Acinetobacter johnsonii SH046]
          Length = 161

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 1   MV-KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + ILR  +  +   E  +  +M L   M+  M    G+G+AA Q+ +  
Sbjct: 1   MSVILPVAQRGEDILRLKAARVADAEFNSDWLMQLASAMIATMLERSGVGIAAPQVYISK 60

Query: 57  RLVVID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS   ++ +EGCLS+P+ R  V+R+  I 
Sbjct: 61  RVIIVASRPNLRYPDAPEMDAVVMVNPEILEFSQATTLGEEGCLSVPNERGQVQRAQSIK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V Y     +      +G  A  +QHE+DHLNGILF+D LS
Sbjct: 121 VLYHTLTGEVMESTFEGFPARIVQHEIDHLNGILFVDRLS 160


>gi|89052958|ref|YP_508409.1| formylmethionine deformylase [Jannaschia sp. CCS1]
 gi|88862507|gb|ABD53384.1| formylmethionine deformylase [Jannaschia sp. CCS1]
          Length = 161

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++++PDP+L   S   + + +    LI ++ + MY+  G GLAA QIGVL R+ V
Sbjct: 1   MSVRRVLLWPDPLL---SVVCDAVVAVDPELIKDLFDTMYAAKGRGLAAPQIGVLQRVFV 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P VFINP +    +D    +E CLSIPD    V R   +T+ +     +
Sbjct: 58  VDVTWKEGARDPRVFINPVVRDSGEDMRSMEEQCLSIPDLPMQVTRPTTLTLDWETPEGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                 DG LA C+ HELDHL+G +  DH S  +R  + 
Sbjct: 118 KTTGTFDGNLARCILHELDHLDGTVIFDHQSPARRAELE 156


>gi|291547147|emb|CBL20255.1| peptide deformylase [Ruminococcus sp. SR1/5]
          Length = 157

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L + SR ++K+   I  LI +ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIRVQGDSVLTKKSRTVDKMTPRIGELITDMLDTMYDAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S + +  +  CLS+P     V R  ++ V+  D N  
Sbjct: 61  IDVGEG-----PIVLINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKAFDVNMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            QI   +GLLA    HE+DHL+G ++ +
Sbjct: 115 EQIYEGEGLLARAFCHEIDHLDGKMYTE 142


>gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488188|ref|ZP_07006225.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 179

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   +       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLNPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D + Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPDGQRIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|18394237|ref|NP_563974.1| PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase [Arabidopsis
           thaliana]
 gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana]
 gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana]
          Length = 269

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R++V+
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +         P              MV +NP +   S+  +++ EGCLS+  +RA V+R 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 246


>gi|311748398|ref|ZP_07722183.1| peptide deformylase [Algoriphagus sp. PR1]
 gi|126576910|gb|EAZ81158.1| peptide deformylase [Algoriphagus sp. PR1]
          Length = 184

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 6/153 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + +PIL++ +  I +  + +  +I NM   M + +G+GLAA QI    RL VI
Sbjct: 1   MIYPIVAYGNPILKKEADEINE-GTALDEMIQNMFATMDNANGVGLAAPQINEGVRLFVI 59

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D       +   +     FINP I+    D   ++EGCLSIPD RA++ R   +T+ Y D
Sbjct: 60  DSNLMLDEEDEEKGIRKAFINPIILDEYGDDYSFEEGCLSIPDVRAEITRPEKLTIEYFD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            N         G+ A  +QHE DHL GILF+D+
Sbjct: 120 ENWNLHEEEFSGMTARVIQHEYDHLEGILFVDY 152


>gi|328949669|ref|YP_004367004.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
 gi|328449993|gb|AEB10894.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
          Length = 178

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYST-----DGIGLAAVQIGV 54
           M  + ++   +P+LR VS P+E     ++  +++++ + +         G G+AA QIGV
Sbjct: 1   MAVREVLQLGNPLLREVSEPVEDPTSPEVARIVEDLRDTLAHWRATTTYGRGIAAPQIGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L R+V ++L +      P   INP I   S +  V  + CLS       V+R   +TVRY
Sbjct: 61  LKRIVFLNLPE----LGPWPLINPTITAKSPETMVVWDACLSFLSIFMQVERHREVTVRY 116

Query: 115 MDCNAQHQIIY--ADGLLATCLQHELDHLNGILFIDHLSRLK----RDMITKKMS 163
            D       +       L+  LQHE+DHL+GIL ID +  +K    R    ++  
Sbjct: 117 QDLRGTWHEVRAGEAHNLSELLQHEIDHLDGILAIDRVVDVKTIVTRQEFERRYR 171


>gi|159899991|ref|YP_001546238.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893030|gb|ABX06110.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 175

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M   PL+   +P+LR+ + P  +  + ++  ++++M +           G G+AA QIGV
Sbjct: 1   MAVVPLIELGNPLLRQPATPFADPTSPEVARILNDMRDTLADMRQRIGYGRGIAAPQIGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L RL++ID  D          +NP+   +S +     E C S P     V+R   +TV  
Sbjct: 61  LKRLILIDTPDTNLV-----LVNPRFERWSREEDERYESCFSFPGIWGLVQRPLGVTVVA 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170
                + Q I A G L+  +QHE+DHL+G +++D    L     T++  K  + + R+
Sbjct: 116 YTLAGEEQRIEASGSLSRIIQHEMDHLDGFVWLDRGPDLHSLCTTQEYEKRYISRERE 173


>gi|168183924|ref|ZP_02618588.1| peptide deformylase [Clostridium botulinum Bf]
 gi|182672944|gb|EDT84905.1| peptide deformylase [Clostridium botulinum Bf]
          Length = 150

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|253580144|ref|ZP_04857411.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848663|gb|EES76626.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA]
          Length = 158

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +VSRP+EK+   I +LI +MLE MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRKIRLQGDEVLAKVSRPVEKMTPRIHDLIGDMLETMYDAMGVGLAAPQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S + +  +  CLS+P     V R  ++ V+ +D +  
Sbjct: 61  IDIGEG-----PIVLINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKALDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 +GLLA    HE+DHL+G ++ +
Sbjct: 115 EVEYEGEGLLARAFCHEIDHLDGHMYTE 142


>gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10]
 gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1]
 gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC]
 gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10]
 gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC]
          Length = 184

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  P LRR +  I  I  +I  L  +M E M +  G+GLAA Q+G   RL V+
Sbjct: 1   MIRELEYYGSPTLRREADAILDITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVRLFVM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P V+INP +   S+D  + +EGCLSIP  RADV R   ITV+ +
Sbjct: 61  CVEGETEDGDLIFCDFPKVYINPVLSDVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLNGVLYIDKMEEPKDYKKFKSTLEKIRR 173


>gi|293572654|ref|ZP_06683622.1| peptide deformylase [Enterococcus faecium E980]
 gi|291607240|gb|EFF36594.1| peptide deformylase [Enterococcus faecium E980]
          Length = 163

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ +I
Sbjct: 1   MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIALI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP+II    +    +  CLSIP     VKR+  +TVRY D + + 
Sbjct: 61  ----EVDEGEKFELINPEIIEAKGESMDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|332178945|gb|AEE14634.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796]
          Length = 165

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           K+ ++  P+ +LR+ S P+ + + ++ +L++ M  +M S +G+GLAA Q+G L RL +  
Sbjct: 4   KRKIITHPNSLLRKRSLPVLQFDKNLESLVEEMEYLMISNNGVGLAAPQVGELSRLFIYK 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + D+         I               EGCLS+P     V+R+  + V+  +      
Sbjct: 64  IDDNLQVVINPEIIEKVGSEVDV------EGCLSVPGVFGPVERAFKVIVQAQNIYGDTI 117

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR--DMITKKMSKLVQ 167
           I+  +G  A  +QHE DHLNG LFID    L+   +   K+  KL +
Sbjct: 118 ILNKEGYEARVIQHEFDHLNGDLFIDKAEYLETAEERAKKQKEKLEK 164


>gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi]
 gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi]
          Length = 186

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 23  EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 80

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + + Y+EGCLSIP    ++ R   I V++ D N +   I
Sbjct: 81  -ENRMARPLVFINPSITETSYELNSYKEGCLSIPGVYYNLMRPNGIVVKFYDENGKSFTI 139

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169
                LA  +QHE+DHLNGILFID+      + I  K+ K  ++ R
Sbjct: 140 ENSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLKPYMRER 181


>gi|299535919|ref|ZP_07049239.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
 gi|298728671|gb|EFI69226.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
          Length = 164

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +I+ L+D++ + M   DG+G+AA QI V  R+ +
Sbjct: 1   MAIKKVIENPAKVLSTPCAEVTEINDEIITLLDDLYDTMVEYDGVGIAAPQIDVGLRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +          +    +  +D   V  EGCLS P    +V+R +++ +   D   +
Sbjct: 61  VELGEERDIL----EMINPTVVETDGAEVDIEGCLSFPGLYGEVERPSYVKIEACDREGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A G  A  + HE+DHL+G+LF    S++KR
Sbjct: 117 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKR 148


>gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 163

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 8/154 (5%)

Query: 1   MVKKPLV--IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +      + ILR+ ++ +E I++ ++ L+++M + MY  +G+GLAA Q+GVL RL
Sbjct: 1   MAYRNIRNNKENNTILRKQAKKVENIDNKVLTLLEDMADTMYQEEGVGLAAPQVGVLKRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           VVID+     +      +               EGCLS+P    +V R   + ++  +  
Sbjct: 61  VVIDIGAGLIKLINPEIME------QSGQQQGMEGCLSVPGISGEVVRPQKVRIKAQNET 114

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  +    LLA  + HE+DHLNG+LFID +  
Sbjct: 115 GAYFELEGTDLLARAICHEIDHLNGVLFIDKIVP 148


>gi|302037899|ref|YP_003798221.1| peptide deformylase [Candidatus Nitrospira defluvii]
 gi|300605963|emb|CBK42296.1| Peptide deformylase [Candidatus Nitrospira defluvii]
          Length = 163

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L+  +  +   +  +  ++ +ML+ + ++ G+ LAA QIG   +++V
Sbjct: 1   MAIRPILQYPHQALKSTNAAVAPSDPAVQAVVQDMLDTLAASPGVALAAPQIGHAVQVIV 60

Query: 61  IDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+      +    +V +NP I++     SV +  CLS+PDY  +V R     V  +   
Sbjct: 61  VDVSRKKGERGHGLVVLLNPVILSLEGKKSVREG-CLSVPDYTGNVLRYEEALVEGLTPE 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +   + A G  A   QHE+DHLNG+LF+D +  L  D+  +K
Sbjct: 120 GRVVTVSASGFGALAFQHEVDHLNGMLFLDRIESLSTDLFRRK 162


>gi|318061932|ref|ZP_07980653.1| polypeptide deformylase [Streptomyces sp. SA3_actG]
          Length = 161

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 68/148 (45%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L   +R        +  L++++   MY+  G+GLAA QIG   R+ V D  D   R++  
Sbjct: 2   LTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDCPDDEDRRHLG 61

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
             +NP+++          EGCLS+P   A   R     V     +   + +   G  A C
Sbjct: 62  HLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRRVEGTGFFARC 121

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKK 161
           LQHE DHL G L++D L   +   + ++
Sbjct: 122 LQHEYDHLEGGLYVDRLDARRHRKVLRE 149


>gi|153939969|ref|YP_001391592.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|152935865|gb|ABS41363.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|295319620|gb|ADF99997.1| peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 150

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +  D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLVDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|254490724|ref|ZP_05103908.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224464079|gb|EEF80344.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 178

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 5   PLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++    P+LR+ + P+ + +          +L  +    G+G+AA Q+G+  +  ++  
Sbjct: 6   DILQLGHPLLRQRAEPVYDILAPAFQAQAKALLSFVIEKGGMGIAAPQVGISQQFFILSS 65

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             ++         P   INP+ I  SD  +   EGCLS+P  RA V R   ITVRY    
Sbjct: 66  HPNSRYPYAPDVPPFFVINPERIAHSDTSNKDWEGCLSLPGIRALVPRFDDITVRYQTLE 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                   DG LA   QHE DHLNG +F+D +      M+ K+  K +
Sbjct: 126 GDTVEKMYDGFLARVFQHEHDHLNGHVFLDRVESNYDVMMEKEWQKQI 173


>gi|237796060|ref|YP_002863612.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|229262415|gb|ACQ53448.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 178

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D +L+RVSR +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + I              +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIIIINPKFLKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 180

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +  P+V++ +PILR+    I+  +    I  L+ +M E ++   GIGLAA QIG   RL 
Sbjct: 1   MILPIVVYGNPILRKKCIDIDIYSCRKKIQELVKDMFETIHKVKGIGLAAPQIGKNIRLF 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +++                VFIN +I+        + EGCLSIP     VKR + +++ Y
Sbjct: 61  IVETPYLLENGKDIDNYKEVFINARILKIHGKEYEFNEGCLSIPGIMGYVKRKSHVSIEY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            D N + +     G+ A  +QHE DH+ G LFID+ S 
Sbjct: 121 YDHNWKKKKETLKGICARVIQHEYDHMEGKLFIDYFSS 158


>gi|182701890|ref|ZP_02617367.2| peptide deformylase [Clostridium botulinum Bf]
 gi|182674086|gb|EDT86047.1| peptide deformylase [Clostridium botulinum Bf]
          Length = 178

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D +L+RVSR +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I            + I              +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  I----DLRNGQEPIIIINPKFLKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|56964188|ref|YP_175919.1| peptide deformylase [Bacillus clausii KSM-K16]
 gi|81678844|sp|Q5WFA2|DEF_BACSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56910431|dbj|BAD64958.1| peptide deformylase [Bacillus clausii KSM-K16]
          Length = 183

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V   +PILR+V+ P+E  +  +    + +MLE + ++             G+GLAA Q
Sbjct: 6   DIVREGNPILRKVAEPVELPLTDEDKQTLVDMLEFIKNSQDPEIAEKYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108
           IG+  RL  I   D       M   NPK+++    +++    +       D    V R A
Sbjct: 66  IGISKRLFAIHATDENGNLYSMGIANPKVVSHSVETNELENGEGCLSVDRDVPGLVPRRA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            +T+  +D       +   G +A   QHELDHL+GI+F D +  L+
Sbjct: 126 RLTITGVDHEGNDVRMRLRGYIAIVFQHELDHLDGIMFYDRIEGLE 171


>gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1]
 gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1]
          Length = 165

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ +E I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQVENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 60  -ENKMARPLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|195952867|ref|YP_002121157.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932479|gb|ACG57179.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
          Length = 164

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 98/164 (59%), Gaps = 5/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV 60
           +   ++++P+P+L+  S+ + KI+ +I+  I+N+ E MYS D   G+A+ Q+GVL  +VV
Sbjct: 1   MIYEILVYPNPLLKEKSKDVNKIDDNIIKHIENLKETMYSKDFCTGIASSQVGVLQNIVV 60

Query: 61  IDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D                +   +I  S+D  +++EGCLS+P+Y A+++R   ++V+ +D 
Sbjct: 61  MDASRFRKPPKNHHGLITLINPVIIKSEDSIIFREGCLSVPEYTANIQRYKHVSVKALDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                I+  +G  A   QHELDHLNGILF+D L+ L  ++  +K
Sbjct: 121 KENEIILDLEGPEAVLFQHELDHLNGILFLDRLTSLD-NLFKRK 163


>gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 191

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             +V   +P+LR+ +RP+      ++ +  LI +M E M    G+GLAA QIG   +L V
Sbjct: 8   LKIVQAGEPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAV 67

Query: 61  IDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           I+ +   H                   V +NP+I+  S++  V+ EGCLS+  + A V+R
Sbjct: 68  IEDRADYHRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVER 127

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + ++ V  +D   + Q I A G  A  LQHE+DHL+G L+ID +  
Sbjct: 128 ARWVRVSCLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRMDP 173


>gi|189423599|ref|YP_001950776.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189419858|gb|ACD94256.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 169

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  +P++ +P P+L++++  +  ++  I  L+ ++++ M +    +G+AA QIGV  R+ 
Sbjct: 1   MAVQPILKYPHPLLKKMAHRVAALDEPIHTLVQDLIDTMQAGPGSVGVAAPQIGVGLRVC 60

Query: 60  VID----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D         +    +  +NP+II+ S    + +             + +        
Sbjct: 61  VVDVSNSRHGKDNNHGLLCMVNPEIISRSGLAVMREGCMSVPDYTGDVERATEITVRFLD 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             + Q + + A G  A  +QHE+DHL+G+LF+D +  +   +  +K
Sbjct: 121 SRSGQQREVAASGFEAVAIQHEMDHLDGLLFLDRIISVSTGLFRRK 166


>gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 179

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIGV  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   + +            + +NP I   S +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILLNPVITPLSPELEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   +     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPEGKPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|295399645|ref|ZP_06809626.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978048|gb|EFG53645.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 184

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  R++ + + D           NPKI++ S         +       +    V 
Sbjct: 63  APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F DH+  
Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169


>gi|237795811|ref|YP_002863363.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|229264121|gb|ACQ55154.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 150

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+  +G GLAA+Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAALQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I   +      EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL GILF D ++
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146


>gi|91794262|ref|YP_563913.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91716264|gb|ABE56190.1| Peptide deformylase [Shewanella denitrificans OS217]
          Length = 168

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ I  +PIL R++  + + ++ ++ L D+ML  M + +G+G+AA Q+     + V+ 
Sbjct: 6   ILPIAITGEPILNRIAVKVSQFDASLIQLADDMLATMMAANGVGIAAGQVHSPLAMFVMA 65

Query: 63  LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            + +    N     P V INP+I+++S       EGCLSIPD R  + RS  I  R+ + 
Sbjct: 66  SRPNERYPNAPVTEPRVIINPQILSYSTQTQAGIEGCLSIPDSRMSIVRSQQIDTRFQNL 125

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +          A   QHE DH+ GI  I+ L++ ++ 
Sbjct: 126 KGEFIEQSFSDFEARIFQHEFDHIKGITLIERLAQQQKQ 164


>gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
 gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
 gi|254767575|sp|A9WHG7|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767577|sp|B9LBS4|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
 gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
          Length = 188

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 22/186 (11%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   D     IL+   RP++  + ++  L+ +M E M +  G+GLAA QIG+  
Sbjct: 1   MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMRAAHGVGLAAPQIGIPI 60

Query: 57  RLVVIDLQDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +L +I++      +            P V INP+I+  S +  +  EGCLS+P +   V 
Sbjct: 61  QLCIIEIPAEYEERADGSVVEVAPAEPYVLINPRIVKMSGEEVMRDEGCLSLPGWYGMVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R  ++TV + D N +H  +   G  L   +QHE+DHLNGILF + +  L        +  
Sbjct: 121 RQTWVTVEFQDLNGKHHRLRRAGDLLGWAIQHEVDHLNGILFTERIRDL------STLRD 174

Query: 165 LVQLRD 170
           + + RD
Sbjct: 175 ITKERD 180


>gi|257899948|ref|ZP_05679601.1| formylmethionine deformylase [Enterococcus faecium Com15]
 gi|257837860|gb|EEV62934.1| formylmethionine deformylase [Enterococcus faecium Com15]
          Length = 163

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGKNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP+II    +    +  CLSIP     VKR+  +TVRY D + + 
Sbjct: 61  ----EVDEGEKFELINPEIIEAKGESMDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS]
 gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS]
          Length = 174

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    L+I+PD  L++VS  +   +  +   + ++ E M +    +G+AA Q+G   R+V
Sbjct: 1   MALLDLLIYPDVRLKQVSASVRVFDEKLHAFLTDLEETMRAGLGSVGIAAPQVGYFERIV 60

Query: 60  VIDLQDHAHRKNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +ID+      K+    I     IT    F V +EGC+S+PDY  +V R+  I +  +D N
Sbjct: 61  IIDVSSKPKIKHHGHLILVNPEITQWKGFEVGREGCMSVPDYTGNVIRAKKIHLMALDEN 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              Q    +G  A  +QHE+DHL+G+LF+D L   + D+  ++
Sbjct: 121 GVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLVSRRYDLFQRR 163


>gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950]
          Length = 197

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+          ++  LI ++ + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   R                ++     D     EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +     +  + L A  LQHE  HL+G L++D L         + + 
Sbjct: 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRLVGRHARSAKRAVK 175


>gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318216|sp|Q0AXL3|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 152

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 13/165 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ ILR  + P+++IN+ ++ ++DNM + MY+ DG+GLAA QIG+  R++V
Sbjct: 1   MSVYQVITVPNDILRGKALPVKEINAGVLRVLDNMRDTMYAADGVGLAAPQIGIPKRMIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ ++         +        +   +  EGCLS+P     V R+  + V+ +D N Q
Sbjct: 61  VDIGENLLELINPEIL------KQEGNQLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A  LLA  LQHE+DHL GILFID         I  ++ KL
Sbjct: 115 ELNFAAVDLLAKVLQHEIDHLEGILFIDKA-------IETRIEKL 152


>gi|117926769|ref|YP_867386.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117610525|gb|ABK45980.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 177

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLY 56
           M    ++++PD  L +  R +E      +     +++++E        +GLAA Q+    
Sbjct: 1   MAILDVLVYPDQRLLQPCRSLEAEEFKTAAFQAFVEDLIETTQHAPGCVGLAAPQVDHAI 60

Query: 57  RLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           R+VV++        +       +    I   +     +EGC+S+PDY  +V R+  I+V+
Sbjct: 61  RMVVVNCGLARKPPDEHHGELILCNPEIISWEGMETAREGCMSVPDYTGNVMRATHISVQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + D + Q Q+ +  G  A  +QHE+DHL G LF D +   K D+  +K+ +  + R
Sbjct: 121 FQDRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRKADLFPRKVYQKKRNR 176


>gi|255994858|ref|ZP_05427993.1| peptide deformylase [Eubacterium saphenum ATCC 49989]
 gi|255993571|gb|EEU03660.1| peptide deformylase [Eubacterium saphenum ATCC 49989]
          Length = 154

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ +RP+ ++   I  L+ +M E M+   G+G+AA Q+G+L R+ +
Sbjct: 1   MALRQVRKKGDELLRKKARPVGEVTDRIKLLLQDMEETMHKEGGVGIAAPQVGILKRMFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +       + +P   I+P+II         +EGCLS+P     V R   I V+Y   + +
Sbjct: 61  M----EPVQGSPEYVIDPEIIKA-SGEQECEEGCLSVPGVVGTVIRPEKIEVKYTGLDGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +        A    HE DHL G+LFID  S +++
Sbjct: 116 ERRRLLTEFEAIVFSHEFDHLEGVLFIDKASNIRK 150


>gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247]
 gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247]
          Length = 200

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 13/163 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  +P+L R + P+   ++     +++ L+D+M + M +  G+GLAA Q+GV 
Sbjct: 1   MAILPICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVG 60

Query: 56  YRLVVIDLQDHAHRKNPMV--------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
            R+ V D  +                     +I     D     EGCLS+P  +    R+
Sbjct: 61  LRMFVYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEQFPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  V  +D      ++   G  A  LQHE  HL+G L++D L
Sbjct: 121 DWARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVL 163


>gi|300861509|ref|ZP_07107593.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|312953219|ref|ZP_07772065.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|295114433|emb|CBL33070.1| peptide deformylase [Enterococcus sp. 7L76]
 gi|300848970|gb|EFK76723.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|310628836|gb|EFQ12119.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|315031809|gb|EFT43741.1| peptide deformylase [Enterococcus faecalis TX0017]
 gi|315152788|gb|EFT96804.1| peptide deformylase [Enterococcus faecalis TX0031]
 gi|315154709|gb|EFT98725.1| peptide deformylase [Enterococcus faecalis TX0043]
 gi|323479052|gb|ADX78491.1| peptide deformylase [Enterococcus faecalis 62]
          Length = 164

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + +        +   +I      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 61  EIDEESG----HFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145


>gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 224

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 6   LVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +V    P+LR+++ P +    ++++   ++ M EVM+   G+GLAA Q+G+  +L V++ 
Sbjct: 37  IVQAGHPVLRQLAAPYDGQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLED 96

Query: 64  QDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     +               +NP+      + + + EGCLS+  Y+A V R   + +R
Sbjct: 97  KYEVDPESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVTRHRNVELR 156

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Y +   +    +  G  A  +QHE DHL GIL++D 
Sbjct: 157 YTNPAGEPVEEWFSGWQARIVQHETDHLRGILYLDR 192


>gi|318061364|ref|ZP_07980085.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318077742|ref|ZP_07985074.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 242

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +    + +L R           ++  L+ +M   MY  +G GLAA Q+ V  RL V
Sbjct: 53  MLR-VTEAGEEVLARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFV 111

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D  D    ++    +NP I   +         EGCLS+P  + ++ R+    VR +D +
Sbjct: 112 YDCFDDEGARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLD 171

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   I   G  A CLQHE DHLNGIL++D L R  R  +   M++
Sbjct: 172 GRPVTIEGTGYFARCLQHETDHLNGILYVDRLGRRARRTVLTDMAE 217


>gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a]
 gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
 gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a]
 gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a]
 gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
 gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a]
          Length = 165

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 60  -ENKMARPLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|255970684|ref|ZP_05421270.1| formylmethionine deformylase [Enterococcus faecalis T1]
 gi|256618121|ref|ZP_05474967.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200]
 gi|256761051|ref|ZP_05501631.1| formylmethionine deformylase [Enterococcus faecalis T3]
 gi|256854795|ref|ZP_05560159.1| formylmethionine deformylase [Enterococcus faecalis T8]
 gi|257420429|ref|ZP_05597419.1| formylmethionine deformylase [Enterococcus faecalis X98]
 gi|255961702|gb|EET94178.1| formylmethionine deformylase [Enterococcus faecalis T1]
 gi|256597648|gb|EEU16824.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200]
 gi|256682302|gb|EEU21997.1| formylmethionine deformylase [Enterococcus faecalis T3]
 gi|256710355|gb|EEU25399.1| formylmethionine deformylase [Enterococcus faecalis T8]
 gi|257162253|gb|EEU92213.1| formylmethionine deformylase [Enterococcus faecalis X98]
          Length = 169

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 6   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + +        +   +I      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 66  EIDEESG----HFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150


>gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola]
          Length = 169

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)

Query: 2   VKKPLVIFPD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +  +  PD P+LR+VS  ++K  N ++  L+D+M E M   +G+GLAA QIGV  R++
Sbjct: 1   MIRAFLP-PDAPLLRKVSAQVDKFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARII 59

Query: 60  VIDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VI+   +  R       P   +   +IT     +  +EGC S+P     V R A I    
Sbjct: 60  VIEFSGNEERAPGESPVPPTVLINPVITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D +  +    A+G  A  +QHE+DHLNGIL+ID  S
Sbjct: 120 QDMDGLNVRGKAEGFHARIIQHEVDHLNGILYIDIAS 156


>gi|227554544|ref|ZP_03984591.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|257078288|ref|ZP_05572649.1| formylmethionine deformylase [Enterococcus faecalis JH1]
 gi|293385128|ref|ZP_06630954.1| peptide deformylase [Enterococcus faecalis R712]
 gi|293389101|ref|ZP_06633573.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294779979|ref|ZP_06745359.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|307273623|ref|ZP_07554851.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|307288889|ref|ZP_07568862.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|307292141|ref|ZP_07572007.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|312910850|ref|ZP_07769686.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|227176342|gb|EEI57314.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|256986318|gb|EEU73620.1| formylmethionine deformylase [Enterococcus faecalis JH1]
 gi|291077605|gb|EFE14969.1| peptide deformylase [Enterococcus faecalis R712]
 gi|291081569|gb|EFE18532.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294452960|gb|EFG21382.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|306496794|gb|EFM66345.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|306500161|gb|EFM69505.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|306509636|gb|EFM78678.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|311288873|gb|EFQ67429.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|315034825|gb|EFT46757.1| peptide deformylase [Enterococcus faecalis TX0027]
 gi|315150901|gb|EFT94917.1| peptide deformylase [Enterococcus faecalis TX0012]
 gi|315164416|gb|EFU08433.1| peptide deformylase [Enterococcus faecalis TX1302]
 gi|315167224|gb|EFU11241.1| peptide deformylase [Enterococcus faecalis TX1341]
 gi|315172963|gb|EFU16980.1| peptide deformylase [Enterococcus faecalis TX1346]
 gi|315573272|gb|EFU85463.1| peptide deformylase [Enterococcus faecalis TX0309B]
 gi|327536241|gb|AEA95075.1| formylmethionine deformylase [Enterococcus faecalis OG1RF]
          Length = 164

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + + R      +   +I      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 61  EIDEESGR----FELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145


>gi|15594411|ref|NP_212199.1| peptide deformylase [Borrelia burgdorferi B31]
 gi|6014950|sp|O51092|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia burgdorferi B31]
          Length = 172

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 9   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 66

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 67  -ENKMARPLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 125

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 126 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 166


>gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a]
 gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a]
          Length = 165

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 60  -ENKMARPLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|302518710|ref|ZP_07271052.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302427605|gb|EFK99420.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 213

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 4/166 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +    + IL R           ++  L+ +M   MY  +G GLAA Q+ V  RL V
Sbjct: 24  MLR-VTEAGEEILARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D  D    ++    +NP I   +         EGCLS+P  + ++ R+    VR +D +
Sbjct: 83  YDCFDDEGARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLD 142

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   I   G  A CLQHE DHLNGIL++D L+R  R  +   M++
Sbjct: 143 GRPVTIEGTGYFARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188


>gi|69245426|ref|ZP_00603421.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257879837|ref|ZP_05659490.1| formylmethionine deformylase [Enterococcus faecium 1,230,933]
 gi|257882563|ref|ZP_05662216.1| formylmethionine deformylase [Enterococcus faecium 1,231,502]
 gi|257886039|ref|ZP_05665692.1| formylmethionine deformylase [Enterococcus faecium 1,231,501]
 gi|257891678|ref|ZP_05671331.1| formylmethionine deformylase [Enterococcus faecium 1,231,410]
 gi|257894153|ref|ZP_05673806.1| formylmethionine deformylase [Enterococcus faecium 1,231,408]
 gi|258614263|ref|ZP_05712033.1| peptide deformylase [Enterococcus faecium DO]
 gi|260559510|ref|ZP_05831691.1| formylmethionine deformylase [Enterococcus faecium C68]
 gi|261206661|ref|ZP_05921359.1| formylmethionine deformylase [Enterococcus faecium TC 6]
 gi|289565022|ref|ZP_06445476.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|293553674|ref|ZP_06674298.1| peptide deformylase [Enterococcus faecium E1039]
 gi|293563684|ref|ZP_06678125.1| peptide deformylase [Enterococcus faecium E1162]
 gi|293570096|ref|ZP_06681176.1| peptide deformylase [Enterococcus faecium E1071]
 gi|294614918|ref|ZP_06694809.1| peptide deformylase [Enterococcus faecium E1636]
 gi|294618610|ref|ZP_06698149.1| peptide deformylase [Enterococcus faecium E1679]
 gi|294623686|ref|ZP_06702519.1| peptide deformylase [Enterococcus faecium U0317]
 gi|314938232|ref|ZP_07845532.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|314943129|ref|ZP_07849927.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|314949326|ref|ZP_07852668.1| peptide deformylase [Enterococcus faecium TX0082]
 gi|314952260|ref|ZP_07855274.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|314992116|ref|ZP_07857566.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|314996298|ref|ZP_07861354.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|68195808|gb|EAN10244.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257814065|gb|EEV42823.1| formylmethionine deformylase [Enterococcus faecium 1,230,933]
 gi|257818221|gb|EEV45549.1| formylmethionine deformylase [Enterococcus faecium 1,231,502]
 gi|257821895|gb|EEV49025.1| formylmethionine deformylase [Enterococcus faecium 1,231,501]
 gi|257828038|gb|EEV54664.1| formylmethionine deformylase [Enterococcus faecium 1,231,410]
 gi|257830532|gb|EEV57139.1| formylmethionine deformylase [Enterococcus faecium 1,231,408]
 gi|260074609|gb|EEW62930.1| formylmethionine deformylase [Enterococcus faecium C68]
 gi|260079154|gb|EEW66847.1| formylmethionine deformylase [Enterococcus faecium TC 6]
 gi|289163229|gb|EFD11075.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|291587468|gb|EFF19352.1| peptide deformylase [Enterococcus faecium E1071]
 gi|291592204|gb|EFF23822.1| peptide deformylase [Enterococcus faecium E1636]
 gi|291595129|gb|EFF26467.1| peptide deformylase [Enterococcus faecium E1679]
 gi|291596901|gb|EFF28119.1| peptide deformylase [Enterococcus faecium U0317]
 gi|291602249|gb|EFF32477.1| peptide deformylase [Enterococcus faecium E1039]
 gi|291604368|gb|EFF33861.1| peptide deformylase [Enterococcus faecium E1162]
 gi|313589542|gb|EFR68387.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|313593330|gb|EFR72175.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|313595602|gb|EFR74447.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|313598137|gb|EFR76982.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|313642428|gb|EFS07008.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|313644275|gb|EFS08855.1| peptide deformylase [Enterococcus faecium TX0082]
          Length = 163

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKRTAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP+II    +    +  CLSIP     VKR+  +TVRY D + + 
Sbjct: 61  ----EVDEGEKFELINPEIIEAKGESLDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|256958401|ref|ZP_05562572.1| formylmethionine deformylase [Enterococcus faecalis DS5]
 gi|256960470|ref|ZP_05564641.1| formylmethionine deformylase [Enterococcus faecalis Merz96]
 gi|256962963|ref|ZP_05567134.1| formylmethionine deformylase [Enterococcus faecalis HIP11704]
 gi|257080477|ref|ZP_05574838.1| formylmethionine deformylase [Enterococcus faecalis E1Sol]
 gi|257083202|ref|ZP_05577563.1| formylmethionine deformylase [Enterococcus faecalis Fly1]
 gi|257088235|ref|ZP_05582596.1| formylmethionine deformylase [Enterococcus faecalis D6]
 gi|257091366|ref|ZP_05585727.1| formylmethionine deformylase [Enterococcus faecalis CH188]
 gi|257417251|ref|ZP_05594245.1| formylmethionine deformylase [Enterococcus faecalis AR01/DG]
 gi|257417968|ref|ZP_05594962.1| formylmethionine deformylase [Enterococcus faecalis T11]
 gi|256948897|gb|EEU65529.1| formylmethionine deformylase [Enterococcus faecalis DS5]
 gi|256950966|gb|EEU67598.1| formylmethionine deformylase [Enterococcus faecalis Merz96]
 gi|256953459|gb|EEU70091.1| formylmethionine deformylase [Enterococcus faecalis HIP11704]
 gi|256988507|gb|EEU75809.1| formylmethionine deformylase [Enterococcus faecalis E1Sol]
 gi|256991232|gb|EEU78534.1| formylmethionine deformylase [Enterococcus faecalis Fly1]
 gi|256996265|gb|EEU83567.1| formylmethionine deformylase [Enterococcus faecalis D6]
 gi|257000178|gb|EEU86698.1| formylmethionine deformylase [Enterococcus faecalis CH188]
 gi|257159079|gb|EEU89039.1| formylmethionine deformylase [Enterococcus faecalis ARO1/DG]
 gi|257159796|gb|EEU89756.1| formylmethionine deformylase [Enterococcus faecalis T11]
          Length = 169

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 6   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + + R      +   +I      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 66  EIDEESGR----FELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150


>gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13]
 gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13]
          Length = 162

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DL 63
             +P L +VS P++    D+  LID+M E M + DG GLAA QIGV  RLV+      D 
Sbjct: 1   MGNPELLKVSEPVDFEKEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGFDTNDR 60

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              A      V INP I   SD+     EGCLS+P  R  V R   I     D       
Sbjct: 61  YPEADSVPFTVLINPIITPLSDEKENGWEGCLSVPGLRGVVPRFTHIKYEGYDAEGNKIE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   A  +QHE DHL+GIL+   +   +     +++ K
Sbjct: 121 REVEDFHARVVQHECDHLDGILYPMKIEDYRYFGFHEEIFK 161


>gi|239826455|ref|YP_002949079.1| peptide deformylase [Geobacillus sp. WCH70]
 gi|239806748|gb|ACS23813.1| peptide deformylase [Geobacillus sp. WCH70]
          Length = 184

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLA 48
             K ++    P LR+V+ P+    S+     + +L+D         + E      GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQVLQSLLDYVKMSQNPELAEKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  R++ + + D           NPKI++ S         +       +    V 
Sbjct: 63  APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV       +   +   GL A   QHE+DHLNGI+F DH+  
Sbjct: 123 RYARITVTGTTLEGKEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169


>gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
 gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42]
          Length = 160

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKIVTHPAEVLETPADEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R   +  +NP I+  S + +  +  CLS P    DV R  ++ V+  D   +
Sbjct: 61  VDIGEESGR---IDLVNPVILEKSGEQTGVEG-CLSFPGVYGDVTRPDYVKVKAYDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+ A+G LA  +QHE+DHL+GILF   ++
Sbjct: 117 PFILEAEGFLARAVQHEMDHLDGILFTSKIT 147


>gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
 gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
          Length = 191

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 14/179 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +  PILR+   P++K    +  LI+NM   + + +G GLA  QI +  R+ +ID +
Sbjct: 2   PIVPYGSPILRKQCSPVDKNYDGLDKLIENMWHTLENANGSGLATPQINLPIRIFIIDSE 61

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
              +  NP                FINP+I  +S+      EGCLSIP   A V R   +
Sbjct: 62  TSFNTMNPEERKVHFEGDNGIREVFINPEITEYSEAKCDDLEGCLSIPGVAAIVSRPYAV 121

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Y D N Q      +GL A  +QHE DH+ G L++D+LS LK  ++TKK++++ + R
Sbjct: 122 KIEYYDRNFQKHTKAFNGLTARIIQHEFDHIEGRLYLDYLSSLKMKLLTKKLAQIKKGR 180


>gi|218532205|ref|YP_002423021.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|254563274|ref|YP_003070369.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|218524508|gb|ACK85093.1| formylmethionine deformylase [Methylobacterium chloromethanicum
           CM4]
 gi|254270552|emb|CAX26555.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens DM4]
          Length = 176

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+           +  L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPVRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+VVI LQ          +++P +   S + + + EG +S+P     V+R A + VRY 
Sbjct: 61  ERVVVIRLQPDEPHAV---YVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL   +
Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKLRAQQ 171


>gi|240140764|ref|YP_002965244.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens AM1]
 gi|240010741|gb|ACS41967.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens AM1]
          Length = 176

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+   +  +       L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPVRPLIFYPDARLHRAAEPVSANSESLTGESWRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+VVI LQ          +++P +   S + + + EG +S+P     V+R A + VRY 
Sbjct: 61  ERVVVIRLQPDEPHAV---YVDPVVAWSSPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL   +
Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKLRAQQ 171


>gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 179

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S +  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + +NP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|325831341|ref|ZP_08164595.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|325486595|gb|EGC89043.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 183

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 82/162 (50%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V  P+PIL ++  P +  +  +  L   M + MY  DG G+AA Q+GV  RLVVI
Sbjct: 3   TVISIVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVI 62

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       ++P+V +NP ++    D  V  EGCLS P     + R  F  VRY D + + 
Sbjct: 63  DCDQDEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEE 122

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             I  +GLL  CLQHELDHL+GI   +    + R    +   
Sbjct: 123 WEIEGEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 164


>gi|227552688|ref|ZP_03982737.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257888656|ref|ZP_05668309.1| formylmethionine deformylase [Enterococcus faecium 1,141,733]
 gi|257897388|ref|ZP_05677041.1| formylmethionine deformylase [Enterococcus faecium Com12]
 gi|293378852|ref|ZP_06625007.1| peptide deformylase [Enterococcus faecium PC4.1]
 gi|227178175|gb|EEI59147.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257824710|gb|EEV51642.1| formylmethionine deformylase [Enterococcus faecium 1,141,733]
 gi|257833953|gb|EEV60374.1| formylmethionine deformylase [Enterococcus faecium Com12]
 gi|292642393|gb|EFF60548.1| peptide deformylase [Enterococcus faecium PC4.1]
          Length = 163

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+  ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKIPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP+II    +    +  CLSIP     VKR+  +TVRY D + + 
Sbjct: 61  ----EVDEGEKFELINPEIIEAKGESMDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
 gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
 gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
 gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
          Length = 160

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKIVTHPAEVLETPAEEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R   +  +NP I+  S +    +  CLS P    +V R  ++ V+  D   +
Sbjct: 61  VDIGEESGR---IDLVNPVILEKSGEQIGVEG-CLSFPGVYGEVTRPDYVKVKAYDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+ A+G LA  +QHE+DHL GILF   ++
Sbjct: 117 PFIVEAEGFLARAIQHEMDHLEGILFTSKIT 147


>gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
           Precipitant
 gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
           Precipitant
 gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-6000
 gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-6000
 gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
 gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
          Length = 197

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 17/169 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R
Sbjct: 1   MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60

Query: 58  LVVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++V++         P              MV +NP +   S+  +++ EGCLS+  +RA 
Sbjct: 61  IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+R   + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 169


>gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S]
 gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISSGVGLAAPQVGLDLSLFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 60  -ENKMAKPLVFINPLITETSYELNSYKEGCLSIPGVYYDLMRPKTIVVNFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169
                LA  +QHE+DHLNG+LFID+      + I KK+ K  ++ R
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKKKLLKPYMKER 160


>gi|303233239|ref|ZP_07319911.1| peptide deformylase [Atopobium vaginae PB189-T1-4]
 gi|302480629|gb|EFL43717.1| peptide deformylase [Atopobium vaginae PB189-T1-4]
          Length = 183

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             K +V FP PIL+ V  P++ I SDI  L  +ML+VMY+TDG GLAA QIG   RLVVI
Sbjct: 6   AYKEMVCFPSPILQTVCTPVKHITSDIKELAHHMLDVMYATDGCGLAAPQIGETIRLVVI 65

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D        KNP V +NP I+T      +  EGCLS P     V R + +     + + +
Sbjct: 66  DVDWSSTSAKNPYVLVNPTIVTADGKDRLMPEGCLSYPGIMVGVTRPSHVICEAYNLDGE 125

Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                A G  +A CLQHE DH+NGI   DHL  L++    K+  
Sbjct: 126 CMRYEATGNLMAACLQHECDHINGITIPDHLPPLEKIEKLKEYK 169


>gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1]
 gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 60  -ENKMARPLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 221

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   DP+LR  + P E       +  L+  M   M    G+GLAA QIGV  RL V
Sbjct: 30  LLPIVAAGDPVLRTPAAPYEGQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAV 89

Query: 61  ----------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                     +            V +NP      +  +++ EGCLS+P ++A V R A +
Sbjct: 90  LEDPATVPEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARHAVV 149

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +R  D +         G  A  +QHE DHL+G L++D 
Sbjct: 150 RLRAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDR 188


>gi|326790873|ref|YP_004308694.1| peptide deformylase [Clostridium lentocellum DSM 5427]
 gi|326541637|gb|ADZ83496.1| peptide deformylase [Clostridium lentocellum DSM 5427]
          Length = 149

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +      + +LR++S+P++  +  +  L+D+M E MY  +G+G+AA Q+G+L R  +
Sbjct: 1   MAIR---TEKEEVLRKISKPVKSFDESLWTLLDDMKETMYLAEGVGIAAPQVGLLKRAFI 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          +  +           +EGCLS+P     V+R  ++ +R  D N  
Sbjct: 58  VDIGEGPVEFVNPEILAVEGEQL------GEEGCLSVPKRYGTVRRPNYVKMRAQDRNGN 111

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I     +A  + HE DHL G LF+D
Sbjct: 112 VFEIEGKEFMARAMLHEFDHLEGKLFVD 139


>gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
 gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846929|gb|EDK23847.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
 gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 166

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  + + K+      LI +MLE MY ++G+GLAA Q+GVL R+VV
Sbjct: 1   MAIRVIREIGDDILEKQCKAVPKMTLRTKILIGDMLETMYESNGVGLAAPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I              +EGCLS+P     V R   + VR  D N  
Sbjct: 61  IDVGEGPIVLINPQIIESSGE------QTGEEGCLSVPGKFGIVTRPDRVKVRAFDENMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA    HELDHL+G L+++
Sbjct: 115 EFEMEGEGLLARAFCHELDHLDGKLYVE 142


>gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a]
 gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b]
 gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23]
 gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805]
 gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26]
 gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b]
 gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23]
 gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26]
 gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 60  -ENKMARPLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04]
 gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 60  -ENRMARPLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169
                LA  +QHE+DHLNGILFID+      + I  K+ K  ++ R
Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLKPYMRER 160


>gi|317490610|ref|ZP_07949082.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|316910286|gb|EFV31923.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
          Length = 180

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 82/158 (51%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL ++  P +  +  +  L   M + MY  DG G+AA Q+GV  RLVVID   
Sbjct: 4   IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++P+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 64  DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +GLL  CLQHELDHL+GI   +    + R    +   
Sbjct: 124 GEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 161


>gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135]
 gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ +  I++++ N    M+ +M + +G+GLAA Q+G+   + V+   
Sbjct: 2   KIVCYPNDLLRIKTKTVLNIDNELRNTAFKMVNLMDAKNGVGLAASQVGLDLSIFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++FINP I   S +  +Y+EGCLSIP    D+ R   I V   D N +   I
Sbjct: 60  -ENAMSKPLIFINPLITETSFELVLYKEGCLSIPGVYYDLLRPKSIIVEAYDENGEFFKI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + GLLA  +QHE+DHL G+LFID+     R+ + +   K  +
Sbjct: 119 ESSGLLARIVQHEMDHLKGVLFIDYYEDKLRNNLLRSYMKKRR 161


>gi|15615221|ref|NP_243524.1| peptide deformylase [Bacillus halodurans C-125]
 gi|17432952|sp|Q9K9I9|DEF_BACHD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus halodurans C-125]
          Length = 182

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48
             K +V   +P+LR V++P+   ++ +       MLE                  G+GLA
Sbjct: 3   TMKDIVREGNPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI---PDYRADVK 105
           A QIG+  +++ +   D   ++  +V  NPKII+ S + +  + G   +    + +  V 
Sbjct: 63  APQIGLSKQMIAVHTTDENEKEYSLVLFNPKIISESVEMTHLEGGEGCLSVDREVQGIVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156
           R A ITV+ ++ N +   +   G  A   QHE+DHLNGI+F D +       KR+
Sbjct: 123 RHARITVKAINENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRIEGWVDPYKRE 177


>gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 17/163 (10%)

Query: 7   VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           V   DP+L   ++ +   +     I ++ID M+ VM    G+GLAA QIGV  +++V++ 
Sbjct: 74  VKAGDPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLED 133

Query: 64  QDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
                                + +V INPK+   S   + + EGCLS+  YRA V+R   
Sbjct: 134 TQEYISYVSKEDIDAQDRCPFDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLD 193

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + V  +D N +   + A G  A  LQHE DHL G L++D +  
Sbjct: 194 VEVSGLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKMVP 236


>gi|17433049|sp|Q9FUZ0|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum]
          Length = 277

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   S+  P+E+I S+ I  +I+ M++VM +  G+GLAA QIG+  +++V+
Sbjct: 90  DIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKIIVL 149

Query: 62  DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +  +      P                 INPK+    +  +++ EGCLS+  +RA V+R 
Sbjct: 150 EDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVVERH 209

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V  +D N +   + A G  A  LQHE DHL+G L++D ++ 
Sbjct: 210 LEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMAP 254


>gi|225352153|ref|ZP_03743176.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157400|gb|EEG70739.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 149

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++          
Sbjct: 2   LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNINGKIGYVLNP 61

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V                 EGCLS+P      +R+ +  VR +D   +  ++   G++   
Sbjct: 62  VLEETCGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLEGKTVVLEGRGIMGRM 115

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LQHE DHLNG +++D L + +R    + M    +
Sbjct: 116 LQHETDHLNGHVYLDRLEKEERREAMRYMRNHHK 149


>gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061]
 gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061]
          Length = 160

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V+ P  +L + + P++  +  +  L+D+M + M   DG+GLAA QIG+  R+ V
Sbjct: 1   MAVKPIVMHPAEVLEQKAEPVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R   +  +NP+++      +  +  CLS P     V+R +++ V+  D   +
Sbjct: 61  VDIGEEPGR---IDLVNPEVLEIKGSQTDIEG-CLSFPSLYGTVERPSYVKVKAFDKKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              I A+G LA  L HE+DHL+GILF    S++ +    K+++++
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158


>gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299]
 gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299]
          Length = 285

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 4   KPLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +V    P+LR+++  I  ++I+S  I  LI  M+ +M +   +GLAA QIGV YR+ V
Sbjct: 65  REIVQAGTPVLRQMAEEIPLDRIDSATIQELIQEMISIMRNRG-VGLAAPQIGVPYRIFV 123

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++  +      +    +  +   F     +            A  +    + VR    + 
Sbjct: 124 MEDTEEGMSDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFEGCLSVRVRGYGGDG 183

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           +     A G  A   QHE+DHL+G+L++D +       +
Sbjct: 184 KPVDFVAKGWQARIAQHEMDHLDGVLYVDRMDSRTFRRV 222


>gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv]
 gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
 gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660194|ref|YP_001281717.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|148821625|ref|YP_001286379.1| peptide deformylase [Mycobacterium tuberculosis F11]
 gi|167970754|ref|ZP_02553031.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|215402181|ref|ZP_03414362.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|215409945|ref|ZP_03418753.1| peptide deformylase [Mycobacterium tuberculosis 94_M4241A]
 gi|215425650|ref|ZP_03423569.1| peptide deformylase [Mycobacterium tuberculosis T92]
 gi|215429251|ref|ZP_03427170.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|215444525|ref|ZP_03431277.1| peptide deformylase [Mycobacterium tuberculosis T85]
 gi|218752062|ref|ZP_03530858.1| peptide deformylase [Mycobacterium tuberculosis GM 1503]
 gi|219556250|ref|ZP_03535326.1| peptide deformylase [Mycobacterium tuberculosis T17]
 gi|224988815|ref|YP_002643502.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797353|ref|YP_003030354.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435]
 gi|254230779|ref|ZP_04924106.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis C]
 gi|254363393|ref|ZP_04979439.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549376|ref|ZP_05139823.1| peptide deformylase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185296|ref|ZP_05762770.1| peptide deformylase [Mycobacterium tuberculosis CPHL_A]
 gi|260199427|ref|ZP_05766918.1| peptide deformylase [Mycobacterium tuberculosis T46]
 gi|260203579|ref|ZP_05771070.1| peptide deformylase [Mycobacterium tuberculosis K85]
 gi|289441809|ref|ZP_06431553.1| polypeptide deformylase [Mycobacterium tuberculosis T46]
 gi|289445969|ref|ZP_06435713.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A]
 gi|289552678|ref|ZP_06441888.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605]
 gi|289568345|ref|ZP_06448572.1| polypeptide deformylase def [Mycobacterium tuberculosis T17]
 gi|289573014|ref|ZP_06453241.1| polypeptide deformylase def [Mycobacterium tuberculosis K85]
 gi|289744125|ref|ZP_06503503.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|289748913|ref|ZP_06508291.1| polypeptide deformylase def [Mycobacterium tuberculosis T92]
 gi|289752458|ref|ZP_06511836.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|289756502|ref|ZP_06515880.1| polypeptide deformylase def [Mycobacterium tuberculosis T85]
 gi|289760545|ref|ZP_06519923.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis GM 1503]
 gi|294995934|ref|ZP_06801625.1| peptide deformylase [Mycobacterium tuberculosis 210]
 gi|297632913|ref|ZP_06950693.1| peptide deformylase [Mycobacterium tuberculosis KZN 4207]
 gi|297729888|ref|ZP_06959006.1| peptide deformylase [Mycobacterium tuberculosis KZN R506]
 gi|298523906|ref|ZP_07011315.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306774525|ref|ZP_07412862.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001]
 gi|306779274|ref|ZP_07417611.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002]
 gi|306783063|ref|ZP_07421385.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003]
 gi|306787430|ref|ZP_07425752.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004]
 gi|306791982|ref|ZP_07430284.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005]
 gi|306796169|ref|ZP_07434471.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006]
 gi|306802026|ref|ZP_07438694.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008]
 gi|306806238|ref|ZP_07442906.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007]
 gi|306966434|ref|ZP_07479095.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009]
 gi|306970629|ref|ZP_07483290.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010]
 gi|307078354|ref|ZP_07487524.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011]
 gi|307082913|ref|ZP_07492026.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012]
 gi|313657217|ref|ZP_07814097.1| peptide deformylase [Mycobacterium tuberculosis KZN V2475]
 gi|6225255|sp|P96275|DEF_MYCTU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512922|sp|A1KFQ1|DEF_MYCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513357|sp|A5TZF5|DEF_MYCTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767595|sp|C1AKA5|DEF_MYCBT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221046693|pdb|3E3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Peptide
           Deformylase In Complex With Inhibitor
 gi|1817695|emb|CAB06569.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
           DEFORMYLASE) [Mycobacterium tuberculosis H37Rv]
 gi|13879947|gb|AAK44667.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
 gi|121491990|emb|CAL70453.1| Probable polypeptide deformylase def [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124599838|gb|EAY58848.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis C]
 gi|134148907|gb|EBA40952.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504346|gb|ABQ72155.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|148720152|gb|ABR04777.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis F11]
 gi|224771928|dbj|BAH24734.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318856|gb|ACT23459.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435]
 gi|289414728|gb|EFD11968.1| polypeptide deformylase [Mycobacterium tuberculosis T46]
 gi|289418927|gb|EFD16128.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A]
 gi|289437310|gb|EFD19803.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605]
 gi|289537445|gb|EFD42023.1| polypeptide deformylase def [Mycobacterium tuberculosis K85]
 gi|289542098|gb|EFD45747.1| polypeptide deformylase def [Mycobacterium tuberculosis T17]
 gi|289684653|gb|EFD52141.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|289689500|gb|EFD56929.1| polypeptide deformylase def [Mycobacterium tuberculosis T92]
 gi|289693045|gb|EFD60474.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|289708051|gb|EFD72067.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712066|gb|EFD76078.1| polypeptide deformylase def [Mycobacterium tuberculosis T85]
 gi|298493700|gb|EFI28994.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216874|gb|EFO76273.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001]
 gi|308327718|gb|EFP16569.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002]
 gi|308332080|gb|EFP20931.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003]
 gi|308335895|gb|EFP24746.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004]
 gi|308339472|gb|EFP28323.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005]
 gi|308343337|gb|EFP32188.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006]
 gi|308347247|gb|EFP36098.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007]
 gi|308351177|gb|EFP40028.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008]
 gi|308355830|gb|EFP44681.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009]
 gi|308359750|gb|EFP48601.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010]
 gi|308363691|gb|EFP52542.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011]
 gi|308367344|gb|EFP56195.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012]
 gi|323721101|gb|EGB30163.1| polypeptide deformylase def [Mycobacterium tuberculosis CDC1551A]
 gi|326902255|gb|EGE49188.1| polypeptide deformylase def [Mycobacterium tuberculosis W-148]
 gi|328457139|gb|AEB02562.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 4207]
          Length = 197

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+          D+  LI  M + M + +G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D                       +I     D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162


>gi|312131601|ref|YP_003998941.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311908147|gb|ADQ18588.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 190

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +   +LR+  + I K   D+  +  NM E MY+  GIGLA  Q+ + YR+ V+
Sbjct: 1   MIYPIIGYGATVLRKKCQDIVKGELDVKQISQNMFETMYAASGIGLAGPQVNLPYRIFVV 60

Query: 62  D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D              D         FIN +I+  + +   Y+EGCLSIP  RADV R   
Sbjct: 61  DGEIINNSAETEEEIDPDLVGFKKTFINAQILEETGEPWPYEEGCLSIPGIRADVYRKPV 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           IT+RY D +         G+ A  +QHE DH+ G+LF D+L+ 
Sbjct: 121 ITIRYFDTDWVEHTESFKGMAARIIQHEYDHIEGVLFTDYLAP 163


>gi|268611639|ref|ZP_06145366.1| peptide deformylase [Ruminococcus flavefaciens FD-1]
          Length = 153

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +V +P++K +  +  L+D+M E +    G+GLAA QIG+  R+ +
Sbjct: 1   MALRKILTDKDESLHKVCKPVDKFDEKLAVLLDDMHETLDKAQGLGLAAPQIGLCRRIFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + L++ +             +T  +     QEGCLS P+    V R     ++  D N  
Sbjct: 61  MHLEEGSFE------CINPEVTQKEGKQRVQEGCLSCPNVWGYVTRPMKCHLKAQDRNGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 +GL A C  HE DHL+G +F +
Sbjct: 115 WFERDFEGLGAQCTCHENDHLDGHVFTE 142


>gi|327441112|dbj|BAK17477.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris
           StLB046]
          Length = 163

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  IL + +R +E I+ +I+ L+D++ + M   DG+G+AA QI V  R+ +
Sbjct: 1   MAIKEVVKNPANILSKKTREVEVIDENIIQLLDDLYDTMVENDGVGIAAPQINVDLRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +        + +  +            EGCLS PD    VKR  ++ +   D   +
Sbjct: 61  VELGEDILEMINPIVLETRGEEEDV------EGCLSFPDLFGMVKRPTYVKIEASDREGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+   A C+ HE+DHL+G+LF   ++R+
Sbjct: 115 IYELEAEDFEARCILHEIDHLDGVLFDSKMTRV 147


>gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group]
          Length = 326

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 38/205 (18%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--------------------- 42
             +V +PDPILR  ++ I   + ++ +L D M +VMY+                      
Sbjct: 97  LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNKQIKKGLLSTI 156

Query: 43  -----------------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD 85
                            DGIGL+A Q+GV  +L+V +          +V +NP +   S 
Sbjct: 157 AREDIPPIEPLVSCYRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSK 216

Query: 86  DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              VY+E CLS P   A+V R   + +   D       +   GL A   QHE DHL GIL
Sbjct: 217 RLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGIL 276

Query: 146 FIDHLSRLKRDMITKKMSKLVQLRD 170
           F D +S    + + + +  L +  +
Sbjct: 277 FFDRMSLDVLESVREGLKDLEKKYE 301


>gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5]
 gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5]
          Length = 160

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  +NP+I+  S + +  +  CLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDIGDDRGR---IDLVNPEILEKSGEQTGIEG-CLSFPGVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|2499922|sp|P94462|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 160

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D   R   +  +NP+I+  S + +  +  CLS P+   DV R+ ++ VR  +   +
Sbjct: 61  VEIGDDRGR---IDLVNPEILEKSGEQTGIEG-CLSFPNVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
 gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1]
 gi|189083073|sp|A4T2T4|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
 gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1]
          Length = 197

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +P+ I  DP+L   + PI       + +D+ +LI ++ + M +  G+GLAA QIGV 
Sbjct: 1   MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   +                ++     D     EGCLS+P       R+ 
Sbjct: 61  KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I    L A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSL 162


>gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1]
 gi|254767600|sp|A5US58|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1]
          Length = 185

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P    IL     P+   N  +  L+ +M E M++  G+GLAA QIG+  
Sbjct: 1   MALRRILRIDNPDDKKILTTRCHPVRLPNPALKQLVADMFETMHAASGVGLAAPQIGITQ 60

Query: 57  RLVVIDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           RL VI +                 +   V INP+II  SD   V  EGCLS+P +  +V 
Sbjct: 61  RLAVISIPPVVEERPDGSKVEVAPEQNFVLINPEIIKASDQEDVGLEGCLSLPGWYGEVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153
           R+A++TV Y D N + Q I    GLL   LQHE+DHL+GILF + +  L
Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLGRALQHEIDHLDGILFTERIRDL 169


>gi|315640287|ref|ZP_07895404.1| peptide deformylase [Enterococcus italicus DSM 15952]
 gi|315483949|gb|EFU74428.1| peptide deformylase [Enterococcus italicus DSM 15952]
          Length = 163

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LR+ ++ I+++  +++ L+D+M E M + DG+G+AA QIG   ++ V+
Sbjct: 1   MRYPIIIQPDEQLRKPNQEIQELTDELVYLLDDMYETMLAHDGVGIAAPQIGKNLQMAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ ++         INP+II         +  CLSIP     V+R+  ITVRY D     
Sbjct: 61  EVDENDR----FDLINPQIIDRKGKSVFVEG-CLSIPHVFGTVERAEEITVRYYDREGDE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA  +QHE+DHLNG+LF D +
Sbjct: 116 MEVTAYGYLARAIQHEIDHLNGVLFTDKV 144


>gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 179

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPEAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
          Length = 160

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  +NP+I+  S + +  +  CLS P    DVKR+ ++ VR  +   +
Sbjct: 61  VDIGDDRGR---IDLVNPEILERSGEQTGIEG-CLSFPGVYGDVKRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985]
 gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985]
          Length = 198

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L R +  +          ++++L+++M + + ++ G+GLAA QIGV 
Sbjct: 1   MTVLPIRITGDPVLHRPTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVG 60

Query: 56  YRLVVIDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
            RL V D  D                V     +     D    +EGCLS+P  R    R+
Sbjct: 61  LRLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +     +D   +   I  +GL A  LQHE+ HL+G L++D L
Sbjct: 121 VWAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDML 163


>gi|169827062|ref|YP_001697220.1| peptide deformylase [Lysinibacillus sphaericus C3-41]
 gi|168991550|gb|ACA39090.1| Peptide deformylase 1 [Lysinibacillus sphaericus C3-41]
          Length = 176

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +++ L+D++ + M   DG+G+AA QI +  R+ +
Sbjct: 13  MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +          +    +  +D   +  EGCLS P    +V+R +++ +   D   +
Sbjct: 73  VELGEERDIL----EMINPTVIETDGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A G  A  + HE+DHL+G+LF   + R+
Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFDSKIQRV 161


>gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica
           SIR-1]
 gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica
           SIR-1]
          Length = 192

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M   + +     P+LR+V+R +        +I   ID+++  M   +G GLAA Q+    
Sbjct: 1   MATIRAIARVGAPVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPI 60

Query: 57  RLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++  +++Q +               NPK+    DD     EGCLS+PD R  V+R A + 
Sbjct: 61  QICALEVQSNPRYPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPDLRGVVRRHARLR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+ +D           G+ A   QHE+DHL G LF+D +  
Sbjct: 121 VQALDREGNSLDFETAGVTAGTYQHEVDHLRGKLFLDRVED 161


>gi|295839268|ref|ZP_06826201.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295827384|gb|EDY42650.2| peptide deformylase [Streptomyces sp. SPB74]
          Length = 250

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 4/166 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +    + IL R            +  L+ +M   MY  +G GLAA Q+GV  RL V
Sbjct: 58  MLR-VTEVGEEILARRCAEATVFGTPGLARLVADMFLTMYLAEGAGLAANQVGVDLRLFV 116

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMDCN 118
            D  D    ++    +N  I   +   ++ ++  GCLS+P  R  + R+    +R +D +
Sbjct: 117 YDRFDDEGARHVGHVLNRVIDEAASGRALVEDVEGCLSVPGARHGLARADRTVLRGVDRD 176

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   I   G  A CLQHE DHLNG++++D L +  R  +   M++
Sbjct: 177 GRPVTIEGTGYFARCLQHETDHLNGMVYVDRLGKRARRAVLADMAE 222


>gi|225865956|ref|YP_002751334.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|229186214|ref|ZP_04313383.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC
           6E1]
 gi|225789299|gb|ACO29516.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228597390|gb|EEK55041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC
           6E1]
          Length = 184

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa]
 gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa]
          Length = 299

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIG+  R++V+
Sbjct: 112 DIVKAGDPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVL 171

Query: 62  DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +         P                 +NPK+   S+  + + EGCLS+  +RA V+R 
Sbjct: 172 EDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERH 231

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V  +  + Q   + A G  A  LQHE DHL G L++D +  
Sbjct: 232 LDVEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKMVP 276


>gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14]
 gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14]
          Length = 215

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + ++  ++    +  +   M +  G+GLAAVQ+GV  R+ VI
Sbjct: 24  LPIVSAGDPVLRRPAEPYDGQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPAPVPEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARHAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R  D + +       G  A  +QHE DHL+G+L++D    
Sbjct: 144 LRARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDRAEP 184


>gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97]
 gi|39930833|sp|Q7U206|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
           DEFORMYLASE) [Mycobacterium bovis AF2122/97]
          Length = 197

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+          D+  LI  M + M + +G+GLAA QIG  
Sbjct: 1   MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D                       +I     D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162


>gi|291288165|ref|YP_003504981.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885325|gb|ADD69025.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 167

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++++PD  L+ ++  +EK++     ++ ++++ M  +    G+AA QIG   R+V
Sbjct: 1   MAVREVLVYPDTRLKEMAEDVEKLDDHAKQVVRDLIDTMEESGHSTGIAATQIGEKLRIV 60

Query: 60  VID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V D          +  + +    I   +    ++EGC+S+PDY  +V R+  I ++Y D 
Sbjct: 61  VADASKNKKCENNHGRLVLINPEILKWEGMLQFREGCMSVPDYTGNVNRARKILIKYNDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           N + ++I A+G  A  LQHE DHL+G LFID +   + D+  +K  K
Sbjct: 121 NFEEKVIEAEGFEAVLLQHETDHLDGTLFIDRVISKRTDLFRRKKYK 167


>gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 179

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIGV  +L
Sbjct: 1   MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   + +             +I       S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|282877697|ref|ZP_06286512.1| peptide deformylase [Prevotella buccalis ATCC 35310]
 gi|281300269|gb|EFA92623.1| peptide deformylase [Prevotella buccalis ATCC 35310]
          Length = 176

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-------LQDH 66
           LR+V++ I      +  LI +M E + S+DGIGLAA QIG   R+VVID         ++
Sbjct: 2   LRKVAQDITPEYEGLGQLIQDMFETLDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPEY 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
              +   +  +   I  +       EGCLSIP     V R+  I V+YMD +      + 
Sbjct: 62  KDFRRAYINPHIIEIDENAPKESMDEGCLSIPGIHEAVSRTTRIHVQYMDEDFTPHDEWI 121

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +G LA  +QHE DHL+G +F+D +S  ++ MI  K+  + Q +
Sbjct: 122 EGYLARVMQHEFDHLDGKMFVDRISPFRKQMIKNKLKGMTQGK 164


>gi|118479185|ref|YP_896336.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|196045777|ref|ZP_03113006.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|118418410|gb|ABK86829.1| polypeptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|196023217|gb|EDX61895.1| peptide deformylase [Bacillus cereus 03BB108]
          Length = 184

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116]
 gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116]
          Length = 165

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I  I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQINNIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 60  -ENKMARPLVFINPLITETSYELNSYREGCLSIPGVYYDLMRPKAIVVSFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169
                LA  +QHE+DHLNG+LFID+      + I  K+ K  ++ R
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKNKLLKPYMRER 160


>gi|52141515|ref|YP_085313.1| peptide deformylase [Bacillus cereus E33L]
 gi|51974984|gb|AAU16534.1| polypeptide deformylase [Bacillus cereus E33L]
          Length = 184

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR+V+  +     ++  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRKVAEEVVIPASKEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|114564402|ref|YP_751916.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114335695|gb|ABI73077.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 170

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
              +    + IL +++ P+   +  +  L DNML  M + +G+G+AA Q+     + ++ 
Sbjct: 6   LLSIATTGEQILTQIAEPVTVFDDALHTLADNMLSTMLNANGVGIAATQVFSNAAMFIMA 65

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +    A    P V INP+I++ S       EGCLSIP  R  + R + I V+Y   
Sbjct: 66  SNPNERYPDAPSMPPTVVINPQILSASAATEADVEGCLSIPGQRLSIARHSEIEVQYQSL 125

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + Q       G +A   QHE DHL GI  ++ ++
Sbjct: 126 DGQLHQQTLTGFVARIFQHEYDHLQGITLLERVN 159


>gi|167760430|ref|ZP_02432557.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704]
 gi|167661929|gb|EDS06059.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704]
          Length = 165

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  + + KI      LI++ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 9   MATRKIREIGDEVLTKPCKEVTKITLRTKVLINDMLDTMYEALGVGLAAPQVGVLKRIVV 68

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I              +EGCLS+P     V R  ++ VR ++ + +
Sbjct: 69  IDVGEGPIVLINPEIIETSGE------QSGEEGCLSVPGKSGMVTRPDYVKVRALNEDME 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA    HE+DHL+G +++D
Sbjct: 123 EIELEGEGLLARAFCHEIDHLDGRMYVD 150


>gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr]
 gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr]
          Length = 165

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDSIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 60  -ENRMAKPLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169
                LA  +QHE+DHLNGILFID+      + I  K+ K  ++ R
Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLKPYMRER 160


>gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10]
 gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10]
          Length = 194

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V    P LR+ +  +   ++ +    +++M+            E      G+GLAA Q
Sbjct: 6   DIVREGHPALRKPAEEVPVPLSEEDRQTLEDMMQFLRNSQDPETAETYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           I V   + V+   +       M F+NPKII+ S + +     +            V R +
Sbjct: 66  INVSKNMFVVRFAEEDEEPIEMTFVNPKIISHSAETTHLPDGEGCLSVDRSVEGTVPRYS 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + V   D N     I   G  A   QHE DHLNGI+F D + 
Sbjct: 126 RVKVEATDENGHSFTIRLRGFFAIVFQHEFDHLNGIMFYDRID 168


>gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032]
 gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032]
          Length = 160

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+VI P  +L + +  ++  +  +  L+D+M + M   DG+GLAA QIG+  R+ V
Sbjct: 1   MAVKPIVIHPAEVLEQKAESVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R   +  +NP+++      +  +  CLS P     V+R +++ V+  D   +
Sbjct: 61  VDIGEESGR---IDLVNPEVLEVKGSQTDIEG-CLSFPSLYGTVERPSYVKVKAFDKKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              I A+G LA  L HE+DHL+GILF    S++ +    K+++++
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158


>gi|284052203|ref|ZP_06382413.1| peptide deformylase [Arthrospira platensis str. Paraca]
 gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39]
          Length = 177

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    DP+LR  ++P+  I    I +LID+++  +   +G+G+AA Q+G   R+
Sbjct: 1   MADILAVTQLGDPVLRDHAQPVANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDRI 60

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +VI          A    P   INPKII  SD+     EGCLS+P  R  V R   I V 
Sbjct: 61  LVIASRPSIRYPAAPEMEPTAMINPKIIGKSDEMVADWEGCLSVPGIRGIVNRYQAIEVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Y   +   +     G +A   QHE DHL GI+F+D ++     M   +  K
Sbjct: 121 YTSRDGHLEHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQK 171


>gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 181

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 10/164 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   +P L   + P+ + N +++  LI ++ + M   +G G+AA QIGV  R+V
Sbjct: 1   MAIGAVLRMGEPCLLAKAEPVAQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVV 60

Query: 60  VI---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +               A      V INPK+    D      EGCLS+P  R  V R   +
Sbjct: 61  IFGQKEPAAVNPRYPDADAVPYTVLINPKLTLIGDKIENDWEGCLSVPGMRGIVPRHLKL 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                D           G  A  +QHE DHL+G+L+   +  LK
Sbjct: 121 HYTGFDQYGNKVDRLVSGFHARVVQHECDHLDGVLYPMRIRDLK 164


>gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 169

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 11/170 (6%)

Query: 2   VKKPLVIFPD-PILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +  +  PD P+LR+VS  ++K ++ ++  L+D+M E M   +G+GLAA QIGV  R++
Sbjct: 1   MIRAFLP-PDAPLLRKVSAQVDKFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARII 59

Query: 60  VIDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VI+   +  R       P   +   +IT     +  +EGC S+P     V R A I    
Sbjct: 60  VIEFSGNEERAPGESPVPPTVLINPVITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL---KRDMITKK 161
            D +  +    A+G  A  +QHE+DHLNGIL+ID  S +   +R+ I  K
Sbjct: 120 QDMDGLNVRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPIASK 169


>gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
 gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
          Length = 153

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKI----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
            +V     +LR V++P+ +     +  + +LI +M + MY+ +G+GLAA QIG+  R+ V
Sbjct: 3   EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D          INP+     D   +  EGCLS+ D   +V+R A + V+Y D   +
Sbjct: 63  ADCNDGFDVY-----INPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            +   A GL A C+QHE+DHLNG LFID    L + 
Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153


>gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
 gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 179

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   + +             +I       S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q     A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99]
 gi|158512383|sp|A0PNK2|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99]
          Length = 197

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       + +D+  LI  M E M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D  D   +                +I     D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCADDRRKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D       +   GL A  LQHE  HL+G L++D L         + + 
Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCLIGRHARSAKRAVK 175


>gi|153955363|ref|YP_001396128.1| Def3 [Clostridium kluyveri DSM 555]
 gi|219855782|ref|YP_002472904.1| hypothetical protein CKR_2439 [Clostridium kluyveri NBRC 12016]
 gi|146348221|gb|EDK34757.1| Def3 [Clostridium kluyveri DSM 555]
 gi|219569506|dbj|BAH07490.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 150

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ ++ +++ I  ++++M + MY   +G GLAA QIG+L RL 
Sbjct: 1   MALRQIRLFGDDILRKKSKEVKAVDNKIRQILNDMADTMYDTENGGGLAAPQIGILKRLA 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +           I          EGCLSIP+    +KR A + +  ++   
Sbjct: 61  VIDMGQGLIKLV------NPKIIKCAGEQEVIEGCLSIPNVFGKLKRPAKVIIEALNEEG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I+     LA C  HE+DHL GILF D ++
Sbjct: 115 SKIILKGTKDLAKCFCHEIDHLKGILFTDLVT 146


>gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478]
          Length = 197

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++PI       + +D+  LI +M + M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  +   +                +I     D    +EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCAEDRGKTARRRGVVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +  +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCL 162


>gi|30022062|ref|NP_833693.1| peptide deformylase [Bacillus cereus ATCC 14579]
 gi|228941135|ref|ZP_04103690.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228954250|ref|ZP_04116277.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228974067|ref|ZP_04134639.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|229047661|ref|ZP_04193247.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH676]
 gi|229071475|ref|ZP_04204696.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           F65185]
 gi|229111445|ref|ZP_04240996.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-15]
 gi|229129252|ref|ZP_04258224.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-Cer4]
 gi|229152174|ref|ZP_04280367.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1550]
 gi|229192182|ref|ZP_04319149.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           10876]
 gi|296504467|ref|YP_003666167.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|39931053|sp|Q819K2|DEF2_BACCR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus ATCC 14579]
 gi|228591293|gb|EEK49145.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           10876]
 gi|228631136|gb|EEK87772.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1550]
 gi|228654178|gb|EEL10044.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-Cer4]
 gi|228671827|gb|EEL27120.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-15]
 gi|228711645|gb|EEL63599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           F65185]
 gi|228723682|gb|EEL75041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH676]
 gi|228785644|gb|EEM33651.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228805378|gb|EEM51970.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228818529|gb|EEM64599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|296325519|gb|ADH08447.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|326941747|gb|AEA17643.1| peptide deformylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 184

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|228909800|ref|ZP_04073623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 200]
 gi|228850089|gb|EEM94920.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 200]
          Length = 184

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M]
 gi|238690954|sp|B2HQN4|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M]
          Length = 197

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       + +D+  LI  M E M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D  D   +                +I     D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCADDRGKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D       +   GL A  LQHE  HL+G L++D L         + + 
Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCLIGRHARSAKRAVK 175


>gi|30264046|ref|NP_846423.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47529482|ref|YP_020831.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186882|ref|YP_030134.1| peptide deformylase [Bacillus anthracis str. Sterne]
 gi|49478480|ref|YP_038035.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65321366|ref|ZP_00394325.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
           str. A2012]
 gi|165872897|ref|ZP_02217522.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167633479|ref|ZP_02391803.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|167639508|ref|ZP_02397779.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|170687132|ref|ZP_02878350.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|170705828|ref|ZP_02896291.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|177655203|ref|ZP_02936812.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190566155|ref|ZP_03019074.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|196035869|ref|ZP_03103271.1| peptide deformylase [Bacillus cereus W]
 gi|196038641|ref|ZP_03105949.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|218905105|ref|YP_002452939.1| peptide deformylase [Bacillus cereus AH820]
 gi|227816748|ref|YP_002816757.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|228916611|ref|ZP_04080177.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228935289|ref|ZP_04098115.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947693|ref|ZP_04109983.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093023|ref|ZP_04224154.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-42]
 gi|229603739|ref|YP_002868274.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|254683741|ref|ZP_05147601.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
 gi|254721576|ref|ZP_05183365.1| peptide deformylase [Bacillus anthracis str. A1055]
 gi|254736086|ref|ZP_05193792.1| peptide deformylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743977|ref|ZP_05201660.1| peptide deformylase [Bacillus anthracis str. Kruger B]
 gi|254754244|ref|ZP_05206279.1| peptide deformylase [Bacillus anthracis str. Vollum]
 gi|254758065|ref|ZP_05210092.1| peptide deformylase [Bacillus anthracis str. Australia 94]
 gi|301055465|ref|YP_003793676.1| peptide deformylase [Bacillus anthracis CI]
 gi|39931064|sp|Q81MQ9|DEF2_BACAN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30258691|gb|AAP27909.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47504630|gb|AAT33306.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180809|gb|AAT56185.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
 gi|49330036|gb|AAT60682.1| polypeptide deformylase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164711384|gb|EDR16936.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167512567|gb|EDR87942.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|167530885|gb|EDR93572.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|170129368|gb|EDS98232.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|170668749|gb|EDT19494.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|172080253|gb|EDT65344.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190563074|gb|EDV17040.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|195991518|gb|EDX55484.1| peptide deformylase [Bacillus cereus W]
 gi|196030364|gb|EDX68963.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|218537238|gb|ACK89636.1| peptide deformylase [Bacillus cereus AH820]
 gi|227006107|gb|ACP15850.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|228690394|gb|EEL44180.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-42]
 gi|228812213|gb|EEM58544.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824454|gb|EEM70260.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228843190|gb|EEM88272.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268147|gb|ACQ49784.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|300377634|gb|ADK06538.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
          Length = 184

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 160

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R+ V
Sbjct: 1   MAVKKVVTHPAEVLETPTESVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D++ R   +  +NP+I+  S + +  +  CLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDIGDNSGR---IDLVNPEILEKSGEQTGIEG-CLSFPGVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|50084241|ref|YP_045751.1| peptide deformylase 2 [Acinetobacter sp. ADP1]
 gi|49530217|emb|CAG67929.1| peptide deformylase 2 [Acinetobacter sp. ADP1]
          Length = 160

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
               +    + IL+  + P+ +   +S+ +  L+  M   M   +G+G+AA QI V  R+
Sbjct: 3   TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++          A    P+V INP+I  FS +  + +EGCLS+PD R  V+R+  I VR
Sbjct: 63  MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Y     Q       G  A  +QHE+DHLNG+LF+D L
Sbjct: 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159


>gi|212715793|ref|ZP_03323921.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661160|gb|EEB21735.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM
           16992]
          Length = 149

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++          
Sbjct: 2   LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVGLRAFSYNIDGKIGYVLNP 61

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V                 EGCLS+P      +R+ +  VR +D + +  ++   G++   
Sbjct: 62  VLEETSGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKTVVLEGHGIMGRM 115

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LQHE DHL+G +++D L + +R    + M    +
Sbjct: 116 LQHETDHLDGHVYLDRLEKEERREAMRYMRNHRK 149


>gi|229180249|ref|ZP_04307593.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           172560W]
 gi|228603458|gb|EEK60935.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           172560W]
          Length = 184

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|42783070|ref|NP_980317.1| peptide deformylase [Bacillus cereus ATCC 10987]
 gi|206978074|ref|ZP_03238958.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217961461|ref|YP_002340029.1| peptide deformylase [Bacillus cereus AH187]
 gi|222097423|ref|YP_002531480.1| peptide deformylase [Bacillus cereus Q1]
 gi|229140704|ref|ZP_04269252.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST26]
 gi|229198091|ref|ZP_04324802.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1293]
 gi|42738998|gb|AAS42925.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
 gi|206743701|gb|EDZ55124.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217068218|gb|ACJ82468.1| peptide deformylase [Bacillus cereus AH187]
 gi|221241481|gb|ACM14191.1| polypeptide deformylase [Bacillus cereus Q1]
 gi|228585389|gb|EEK43496.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1293]
 gi|228642776|gb|EEK99059.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST26]
 gi|324327875|gb|ADY23135.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 184

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  R++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKRMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|229104578|ref|ZP_04235242.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-28]
 gi|228678825|gb|EEL33038.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-28]
          Length = 184

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27]
 gi|39930875|sp|Q83HQ3|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27]
          Length = 201

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ I    +L   ++P+    S I  ++ +M   M++  G+GLA  QIG+  R+ V  
Sbjct: 9   ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 67

Query: 63  LQDHAHRKNPMVFINPKIITF---------------SDDFSVYQEGCLSIPDYRADVKRS 107
             +       +      +I                 +      +EGCLS P Y+  ++R+
Sbjct: 68  YTEGDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDREGCLSFPGYQFPLERA 127

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +T+   D N +   ++A G LA   QHE DHL G L++D L
Sbjct: 128 PQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 170


>gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
 gi|39930873|sp|Q83GH8|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
          Length = 228

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ I    +L   ++P+    S I  ++ +M   M++  G+GLA  QIG+  R+ V  
Sbjct: 36  ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 94

Query: 63  LQDHAHRKNPMVFINPKIITF---------------SDDFSVYQEGCLSIPDYRADVKRS 107
             +       +      +I                 +      +EGCLS P Y+  ++R+
Sbjct: 95  YTEGDTLHQGVAINPDLLIPKGVPKRQTNKQQANNSTSCDEPDREGCLSFPGYQFPLERA 154

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +T+   D N +   ++A G LA   QHE DHL G L++D L
Sbjct: 155 PQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 197


>gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836]
          Length = 240

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60
           P+V   DP+LRR + P + + +  +  + ++ +   M +  G+GLAA Q+GV  R+ V  
Sbjct: 51  PIVQLGDPVLRRKAEPFDGQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAVLE 110

Query: 61  --------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   +      +    +  +NP+      D   + EGCLS+P +   V R   +  
Sbjct: 111 DPATVSAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPLKVDA 170

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Y D     + +   G  A   QHE DHLNG L++D +    R M 
Sbjct: 171 GYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVEP--RSMA 214


>gi|149911294|ref|ZP_01899915.1| peptide deformylase [Moritella sp. PE36]
 gi|149805609|gb|EDM65611.1| peptide deformylase [Moritella sp. PE36]
          Length = 168

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 5/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  P+  L   +  +  + S +  LID+ML+ MY   DGIGLA+ Q+G    +V
Sbjct: 1   MAVLTILTAPNKKLEIPAEKVADV-STVQTLIDDMLDTMYKTDDGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +  +   PMV INP ++   +  S  +  CLSIP Y ADV+R   + V  +D   
Sbjct: 60  VIDISEGRNE--PMVLINPVVVEGENKESGQEG-CLSIPGYYADVERFTKVKVTALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
               I  DG LA  +QHE+DHL G LFID+LS L
Sbjct: 117 NEIEINDDGFLAIAMQHEIDHLKGTLFIDYLSPL 150


>gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 169

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 7/166 (4%)

Query: 12  PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           P+L  ++RP+E   +  I  L+ +M+E +  + G+GLAA Q+ V  R+++  +  +   +
Sbjct: 2   PVLAGIARPVEDPTDPKIHRLVADMIETLADSGGVGLAAPQVHVPLRVMIFHVPANRSTE 61

Query: 71  NP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   V INP++    ++     EGCLS+P     V R   +  R +D + +     
Sbjct: 62  AEGAVPLTVLINPQLTPLGEEMVEDWEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVERE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170
           A    A  +QHE DHL+G+L+   L    +    +++ K L   R+
Sbjct: 122 ARDFHARVVQHEYDHLDGVLYPRRLRDPSQFGFVEEIRKALAANRE 167


>gi|206895565|ref|YP_002246726.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738182|gb|ACI17260.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265]
          Length = 171

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 7/157 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVID 62
            + + PD +LR  ++ ++    +   ++++M  +M   +  G+GLAA Q+G+  R VVID
Sbjct: 2   DIRVIPDKMLRAKAQKVKSFTEEDRRIVEDMFRLMKENEVEGVGLAAPQVGISKRFVVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L +          INP+      +     EGCLS+P     V+R   I V + +   +  
Sbjct: 62  LDEFHEV-----LINPRWEPLGKEKEEDIEGCLSVPGVYGPVERFKKIKVSFTNLYGEKI 116

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +  DG+L+  +QHE+DHL+G+LFID ++   R  + 
Sbjct: 117 TLKLDGMLSRVVQHEVDHLDGVLFIDKITDWDRIEVM 153


>gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965]
 gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965]
          Length = 153

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKI----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
            +V     +LR V++P+ +     +  + +LI +M + MY+ +G+GLAA QIG+  R+ V
Sbjct: 3   EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +          INP+     D   +  EGCLS+ D   +V+R A + V+Y D   +
Sbjct: 63  ADCNEGFDVY-----INPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            +   A GL A C+QHE+DHLNG LFID    L + 
Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153


>gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN]
 gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923]
 gi|17432941|sp|Q9CBI2|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767596|sp|B8ZSF6|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae]
 gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923]
          Length = 197

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P++         ++  LI  M + M +  G+GLAA QIG  
Sbjct: 1   MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  +   +           +    +I     D     EGCLS+P     + R+ 
Sbjct: 61  LRVFVYDCAEDCRQTARRRGVVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGRAQ 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +         GL A  LQHE  HL+G L++D+L         + + 
Sbjct: 121 WARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYLIGRHARSAKRAIK 175


>gi|218231086|ref|YP_002368775.1| peptide deformylase [Bacillus cereus B4264]
 gi|218159043|gb|ACK59035.1| peptide deformylase [Bacillus cereus B4264]
          Length = 184

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEDVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|229174643|ref|ZP_04302171.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3]
 gi|228608845|gb|EEK66139.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3]
          Length = 184

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSIPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 179

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIHNILKMGDERLLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   + +             +I       S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q  +  A G  A  +QHE DHL G L+   ++   +    
Sbjct: 121 GFDPQGQPIVRVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166


>gi|228922725|ref|ZP_04086023.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960236|ref|ZP_04121893.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228980660|ref|ZP_04140967.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis Bt407]
 gi|229081226|ref|ZP_04213735.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock4-2]
 gi|229146546|ref|ZP_04274916.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST24]
 gi|228636908|gb|EEK93368.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST24]
 gi|228702088|gb|EEL54565.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock4-2]
 gi|228779064|gb|EEM27324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis Bt407]
 gi|228799504|gb|EEM46464.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228836780|gb|EEM82123.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 181

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49
            K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLAA
Sbjct: 1   MKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106
            QIGV  +++ + + D           NPKII+           +       +    V R
Sbjct: 61  PQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|47565850|ref|ZP_00236889.1| polypeptide deformylase [Bacillus cereus G9241]
 gi|47557130|gb|EAL15459.1| polypeptide deformylase [Bacillus cereus G9241]
          Length = 184

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|228929021|ref|ZP_04092053.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229123495|ref|ZP_04252694.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           95/8201]
 gi|228659982|gb|EEL15623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           95/8201]
 gi|228830828|gb|EEM76433.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 181

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49
            K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLAA
Sbjct: 1   MKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106
            QIG+  +++ + + D           NPKII+           +       +    V R
Sbjct: 61  PQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|165760871|pdb|2OKL|A Chain A, Crystal Structure Of Peptide Deformylase 2 With Actinonin
           From Bacillus Cereus
 gi|165760872|pdb|2OKL|B Chain B, Crystal Structure Of Peptide Deformylase 2 With Actinonin
           From Bacillus Cereus
          Length = 185

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 4   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 63

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 64  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 124 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 171


>gi|206971224|ref|ZP_03232175.1| peptide deformylase [Bacillus cereus AH1134]
 gi|206733996|gb|EDZ51167.1| peptide deformylase [Bacillus cereus AH1134]
          Length = 184

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   +PILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGNPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|218899130|ref|YP_002447541.1| peptide deformylase [Bacillus cereus G9842]
 gi|228902480|ref|ZP_04066634.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 4222]
 gi|228966997|ref|ZP_04128035.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218546057|gb|ACK98451.1| peptide deformylase [Bacillus cereus G9842]
 gi|228792731|gb|EEM40295.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857224|gb|EEN01730.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 4222]
          Length = 184

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|124485039|ref|YP_001029655.1| peptide deformylase [Methanocorpusculum labreanum Z]
 gi|124362580|gb|ABN06388.1| peptide deformylase [Methanocorpusculum labreanum Z]
          Length = 157

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+L   +  ++ I    + ++ NM + M     IGL+A QIGV  RL ++
Sbjct: 1   MICEIRKYGDPVLFLHAETVQNIGPLELEILTNMWDTMIHNKCIGLSAPQIGVSKRLFIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +      +      +    +          EG   IP  +  V+R   IT RY+D + + 
Sbjct: 61  NAGGVTIKGANPEVLKEGAL------VEEMEGSPCIPGIQRPVRRPGKITCRYLDISGET 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 G+ A    HE DH  GIL++DHL  +++ MI K + K
Sbjct: 115 IETELKGIAARAFLHEKDHHEGILYLDHLKPIQKRMILKSLEK 157


>gi|262373169|ref|ZP_06066448.1| polypeptide deformylase [Acinetobacter junii SH205]
 gi|262313194|gb|EEY94279.1| polypeptide deformylase [Acinetobacter junii SH205]
          Length = 161

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 9/160 (5%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+  +  +   + NS+ ++ L   M   M   +GIG+AA Q+ +  
Sbjct: 1   MSVILPVAQRGEEILKIKAALVSDAEFNSEWLLQLASAMHATMLERNGIGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS    + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSQATCLGEEGCLSVPDERGQVQRAQSVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           VRY     +      DG  A  +QHE+DHL+G+LF++ LS
Sbjct: 121 VRYHTLQGEVIETTFDGFPARIVQHEVDHLDGVLFVERLS 160


>gi|229117467|ref|ZP_04246841.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-3]
 gi|228665972|gb|EEL21440.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-3]
          Length = 181

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49
            K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLAA
Sbjct: 1   MKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106
            QIGV  +++ + + D           NPKII+           +       +    V R
Sbjct: 61  PQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 213

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V    P+LR+ +   E       +  L++ M + MY   G+GLAA Q+G+  ++ V
Sbjct: 26  VLPIVQLGHPVLRQQAVAYENQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAV 85

Query: 61  IDL----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           ++                        NP+ ++ S+  +V+ EGCLS   ++  V R A I
Sbjct: 86  LEDLYPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRPADI 145

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           +  Y D + Q       G  A  +QHE DHL+G ++ID      R +I +
Sbjct: 146 SATYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYIDKAE--TRSLIDE 193


>gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae]
 gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae]
          Length = 238

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ + P+ +   ++ ++  +++ M+ V+   D +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQKAAPVPQEHILSPEVEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
               ++ P      + +T                     + EGC+S+  + ADV+R   +
Sbjct: 113 GSIRKELPEAVYQARQMTELPLTVFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           ++   + N     +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 173 SISGSNGNGVQNELELSGWNARIAQHEMDHLDGKLYTDHMDR 214


>gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula]
          Length = 257

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP++   +R ++     +  I N+ID+M+ VM    G+G+AA QIG+  R++V++
Sbjct: 70  IVKAGDPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLE 129

Query: 63  LQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            ++     N                  +NPK+   S+  + + EGCLS+  ++A V+R  
Sbjct: 130 DKEEFICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYL 189

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V   D   +   I A G  A  LQHE DHL+G L++D +  
Sbjct: 190 DVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVP 233


>gi|197302409|ref|ZP_03167465.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC
           29176]
 gi|197298530|gb|EDY33074.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC
           29176]
          Length = 159

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  + ++K+      LI +ML+ MY   G+GLAA Q+G+L ++VV
Sbjct: 1   MAIREVRKIGDEILGKQCKEVKKMTIRTKILIGDMLDTMYEKMGVGLAAPQVGILKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I              +EGCLS+P     V R  ++ VR ++   +
Sbjct: 61  IDVGEGPIVLINPEIIETSGE------QTGEEGCLSVPGKWGIVTRPNYVKVRALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  +GLLA    HE+DHL+G L++D +  
Sbjct: 115 EFEIEGEGLLARAFCHEIDHLSGHLYVDKVED 146


>gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335]
 gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335]
          Length = 176

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    DP+LR  +  +  +    +  LID ++ +    +G+G+AA Q+    +L
Sbjct: 1   MTKILKIAELGDPVLRSPADKVCDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++  + +    +     P   INP+I+ +SD  +   EGCLS+P  R  VKRS  I V 
Sbjct: 61  FIVASRPNLRYLHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGLVKRSKEIEVS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           Y D   Q Q       +A  +QHE DH+NG +F+D +  +
Sbjct: 121 YTDRYGQQQQQIFTDFVARIIQHEYDHINGKVFLDRIDSV 160


>gi|242373503|ref|ZP_04819077.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1]
 gi|242348866|gb|EES40468.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1]
          Length = 162

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +K LV    PIL++   P+ + + ++  L+ ++ + +Y+ +   + A QI V  R+ +
Sbjct: 1   MTRKKLVKSSHPILKKEIAPVTEFDENLSLLLKDLEDTLYAEEAAAICAPQINVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I           +  INP + + SD+     EG +++P+   +V RS  I ++  D N  
Sbjct: 61  I----DMEMDGLLQLINPVVQSQSDEMITDLEGSITLPNTFGEVNRSKMIVIQSSDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF +  +RL
Sbjct: 117 QVELTAYDDVARMILHMIDHLNGILFTEKANRL 149


>gi|229098440|ref|ZP_04229384.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-29]
 gi|228684963|gb|EEL38897.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-29]
          Length = 182

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49
            K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLAA
Sbjct: 1   MKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106
            QIGV  +++ + + D           NPKII+           +       +    V R
Sbjct: 61  PQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|157827157|ref|YP_001496221.1| polypeptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802461|gb|ABV79184.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 187

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 16/166 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +LR  S P+  I+S + + + +MLE MY+ +GIG++A+Q+G   R ++
Sbjct: 1   MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 60

Query: 61  IDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIP------DYRADVKRSAFIT 111
           +D+    + +    P   INP++   S++  +  E C+SI           DV+R   I+
Sbjct: 61  VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCISIRKEDGIAFIIGDVERPKNIS 120

Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150
           + Y+D     + +  +G         + CLQHELDHL+GILFID L
Sbjct: 121 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 166


>gi|299139618|ref|ZP_07032792.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
 gi|298598546|gb|EFI54710.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
          Length = 191

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 17/166 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           ++  +V   +P+LR  S+ + K   ++  I NLID M E +    G+GLAA Q+G   +L
Sbjct: 1   MRLKIVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQL 60

Query: 59  VVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            VI+ +   H+                  V +NP +    +  + + EGCLS+P + A V
Sbjct: 61  AVIEDKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            R+  + V  +D   + ++I A G  A  LQHE+DHL+G L+ID +
Sbjct: 121 PRAKEVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRM 166


>gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis]
          Length = 305

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +  +  ++I S+ I  +ID+M+ VM++  G GLAA Q+GV  +++V+
Sbjct: 118 EIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVL 177

Query: 62  DLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           + ++                H  + ++ INPK+ +     + + EGCLS+  +R  V+R 
Sbjct: 178 EDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERH 237

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V     +     I A G  A  LQHE DHL G+L++D L  
Sbjct: 238 LEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIP 282


>gi|229031607|ref|ZP_04187606.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1271]
 gi|228729701|gb|EEL80682.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1271]
          Length = 184

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSMPASEEDTTALKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIG+  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|293343343|ref|XP_002725458.1| PREDICTED: peptide deformylase-like protein-like [Rattus
           norvegicus]
 gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase-like protein [Rattus norvegicus]
          Length = 231

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E       ++  L++ +++VM     +GL+A Q+GV  +++V++  
Sbjct: 57  QVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFP 116

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      V +NP +         + EGC S+  + A V R   +
Sbjct: 117 DRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D   +  +  A G  A  +QHE+DHL+G LFID +  
Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMDS 218


>gi|239626610|ref|ZP_04669641.1| peptide deformylase [Clostridiales bacterium 1_7_47_FAA]
 gi|239516756|gb|EEQ56622.1| peptide deformylase [Clostridiales bacterium 1_7_47FAA]
          Length = 153

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLV 59
           M  + +    DPILR+  + ++ ++  I  L+D+M E   ++ +G  LAA Q+G+L RLV
Sbjct: 1   MAIRNIRYDNDPILRKRCKEVKTVDDKIRLLLDDMAETLHHTENGAALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID  D+  +      I               EGCLS P+      R   +T++ +D N 
Sbjct: 61  VIDYCDYHLKLVNPQIIG------YSGVQECIEGCLSFPNRFVKTIRPQKVTIQSLDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  II  +  +A C  HEL+HL+GI+F+D 
Sbjct: 115 KEIIITGENEMAKCFCHELEHLDGIIFLDK 144


>gi|303239362|ref|ZP_07325890.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302593148|gb|EFL62868.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 155

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +L +V R ++ I++ I+ L+ +M + MY+ +G+GLAA Q+GVL RLVV
Sbjct: 1   MALRNVRIDGDDVLGKVCRQVDVIDNRILILLKDMADTMYAENGVGLAAPQVGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +  +            EGCLS+P+   +V R   + V  ++   +
Sbjct: 61  IDVGEGLIELINPKIVKEEGEVLDI------EGCLSVPELVGEVVRPKKVWVEALNTKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  + LLA    HE+DHL+GILF     +L    I KK  K
Sbjct: 115 KICLEGEDLLARAFCHEIDHLDGILFKSRAIKL----INKKELK 154


>gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 218

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + +++  +    +  +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 27  LPIVAAGDPVLRRTAEPFDGQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVI 86

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP           + EGCLS+P ++A V R A + 
Sbjct: 87  EDPAPVPEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARHARVR 146

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +R +D   +       G  A  +QHE DHLNG L++DH
Sbjct: 147 LRALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLDH 184


>gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus]
          Length = 231

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E       ++  L+  M++VM     +GL+A Q+GV  +++ ++  
Sbjct: 57  QVGDPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFP 116

Query: 65  DH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      V +NP +         + EGC S+  + A V R   +
Sbjct: 117 DKLLRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D   +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKMDS 218


>gi|229157552|ref|ZP_04285629.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           4342]
 gi|228626002|gb|EEK82752.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           4342]
          Length = 181

 Score = 98.7 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49
            K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLAA
Sbjct: 1   MKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106
            QIG+  +++ + + D           NPKII+           +       +    V R
Sbjct: 61  PQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968]
          Length = 172

 Score = 98.7 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+V+ PI   E     + +L+  M+++M     +G+AA QIGV  R++V       
Sbjct: 9   NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFGTSYTK 68

Query: 68  HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            R+      +  +I       S++     EGCL+  D   +V R+  I     D      
Sbjct: 69  RRQPEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNPV 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              A GL A  LQHE+DHL+GILFID +  
Sbjct: 129 TKRARGLEARILQHEIDHLDGILFIDRIED 158


>gi|194014264|ref|ZP_03052881.1| peptide deformylase [Bacillus pumilus ATCC 7061]
 gi|194013290|gb|EDW22855.1| peptide deformylase [Bacillus pumilus ATCC 7061]
          Length = 185

 Score = 98.7 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P+LR+ +  +E     +    + +M+E + ++             G+GLAA Q
Sbjct: 6   DIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDADMAEKYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           I V  R++ +  +D    +      NP+I++ S   +     +            V R  
Sbjct: 66  INVSKRMIAVHCEDEDGVEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVPRYQ 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+      +   I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 126 KIRVKGTTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169


>gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328]
 gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328]
          Length = 177

 Score = 98.7 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              +    DP+LR  ++P+  I  + I +LID+++  +   +G+G+AA Q+G   R++VI
Sbjct: 4   ILAVTQLGDPVLRDHAQPVANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVI 63

Query: 62  -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                     A    P   INPKII  S++     EGCLS+P  R  V R   I V Y  
Sbjct: 64  ASRPSIRYPAAPEMEPTAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQAIEVEYTS 123

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   Q     G +A   QHE DHL GI+F+D ++     M   +  K
Sbjct: 124 RDGHLQHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQK 171


>gi|302384945|ref|YP_003820767.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302195573|gb|ADL03144.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 151

 Score = 98.7 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59
           M  + +  F D  LR  S+P+E++N  I  ++D+M E +++T   G LAA Q+G+L RLV
Sbjct: 1   MALREIRTFDDNELRLKSKPVEQVNDRIRMILDDMAETLHNTPNGGALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   +      +   +I +S+      E CLS P     V+R   + V+ +D N 
Sbjct: 61  VIDLGDGVRK------LINPVILWSEGEQFEPEACLSFPGLWGKVRRPKSVVVKALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
             + I A   +A CL HE+DHL+GI+F D
Sbjct: 115 CERKIKASDFMAKCLCHEIDHLDGIVFTD 143


>gi|307328424|ref|ZP_07607600.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885997|gb|EFN17007.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 227

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V    P+LR+ + P E       +  L+  M E M+S  G+GLAA QIGV  RL VI
Sbjct: 20  LPIVSAGVPVLRQPALPYEGQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVI 79

Query: 62  DLQDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLSIP ++A V R   I 
Sbjct: 80  EDPAEVAAEVQEVRGRVPQPYRVLVNPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPDRIR 139

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +R  D   +       G  A  +QHE DHL+G+L++D
Sbjct: 140 LRGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176


>gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
 gi|254767599|sp|A7NPM9|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
          Length = 185

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P    IL     P+   N  +  L+ +M E M++ +G+GLAA QIGV  
Sbjct: 1   MGLRHILRIDNPDEKKILTTRCHPVRMPNPSLKQLVADMFETMHAANGVGLAAPQIGVTQ 60

Query: 57  RLVVIDLQDHAH-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           RL VI +                 +   V INP+I+  SD   V  EGCLS+P +  +V 
Sbjct: 61  RLAVIAIPPMMEERPDGTKVEVAPEQTFVLINPEIVKASDQEDVGLEGCLSLPGWYGEVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153
           R+A++TV Y D N + Q I    GLLA  LQHE+DHL+G+LF + +  L
Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLARALQHEIDHLDGVLFTERIRDL 169


>gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 179

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+ + +   +  L+ ++L+ M++ +G GLAA QIG   ++V
Sbjct: 1   MTVRAILKMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMV 60

Query: 60  VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V            A      V INP I    ++  +  EGCLS+P  RA V R + +   
Sbjct: 61  VFGSGEPNPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWSKVRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DHL G L+   +   
Sbjct: 121 GFDLYGDPIDRTVDGFHARVVQHECDHLWGKLYPMRVRDF 160


>gi|91205481|ref|YP_537836.1| polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|91069025|gb|ABE04747.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 195

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 16/166 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +LR  S P+  I+S + + + +MLE MY+ +GIG++A+Q+G   R ++
Sbjct: 9   MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 68

Query: 61  IDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIP------DYRADVKRSAFIT 111
           +D+    + +    P   INP++   S++  +  E CLSI           DV+R   I+
Sbjct: 69  VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCLSIRKEDGIAFIIGDVERPKNIS 128

Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150
           + Y+D     + +  +G         + CLQHELDHL+GILFID L
Sbjct: 129 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 174


>gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56]
 gi|123722301|sp|Q253S4|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56]
          Length = 186

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +   ILRR +  I +I   I  L+ +M E M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRELEYYGSHILRRKADIIPEITDTIRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVV 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P V+INP +   S+D  + +EGCLSIP  RADV R   ITV  +
Sbjct: 61  CVEGETEDGDLIFCDFPKVYINPVLSNASEDLVIGREGCLSIPGLRADVYRPQSITVTAL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHL+G+L+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173


>gi|114778706|ref|ZP_01453518.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114551068|gb|EAU53630.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 169

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDL 63
            ++  PD  LR+V   +    SD+      +  VM +  G +G+AA QIG   R++VID 
Sbjct: 11  DILKHPDERLRQVCPDVTDFGSDLEARFAQLDAVMRAAPGGVGIAAPQIGWQQRMIVIDC 70

Query: 64  QDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++           +++  +I   +  ++ +EGCLS+PD+ A V+R+  + V Y D +   
Sbjct: 71  RESLRPCKNNGLLWMSNPVIESVEGKALGREGCLSVPDWVAMVERARSLQVSYDDVHGDR 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             + + G  A  +QHELDHL+GILFID +    RD++ +
Sbjct: 131 LSLESTGFEARVIQHELDHLDGILFIDRVVS-ARDLVRR 168


>gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
           25986]
 gi|133776536|gb|EBA40356.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
           25986]
          Length = 180

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQ 64
           +V+ PDP LR+    IE+I   I  L + M ++M+   G GLAA QIG L +LV I    
Sbjct: 8   IVLSPDPRLRQECAVIEEITPAIEALAEKMKKIMFENGGCGLAAPQIGELIQLVTIDCDY 67

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              +  +P V INP I+  SD    + EGCLSIP    +++R   + V   D +A     
Sbjct: 68  SDKNDYDPYVLINPVIVEQSDHLVPFSEGCLSIPGISCEIERPDHVVVEAYDLDANLIRY 127

Query: 125 YADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            A G L   CLQHE+DHL+G    + L  ++R    K+  
Sbjct: 128 EATGDLFCVCLQHEIDHLHGNTMFERLKPMQRIKAVKEYQ 167


>gi|319892209|ref|YP_004149084.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161905|gb|ADV05448.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 161

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +     PILR+ + P+   ++ + +LI ++ + +Y  +G  LAA QIGV  R+ ++
Sbjct: 1   MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                  +   +  INP++I  SD+ +   EGCLS+P    +V RS  ITVR  D N   
Sbjct: 61  ----DMEQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             + A   +A  + H +D+LNGILF+D + R 
Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMIDRE 148


>gi|323464693|gb|ADX76846.1| peptide deformylase 1 [Staphylococcus pseudintermedius ED99]
          Length = 161

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +     PILR+ + P+   ++ + +LI ++ + +Y  +G  LAA QIGV  R+ ++
Sbjct: 1   MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                  +   +  INP++I  SD+ +   EGCLS+P    +V RS  ITVR  D N   
Sbjct: 61  ----DMEQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             + A   +A  + H +D+LNGILF+D + R 
Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMMDRE 148


>gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 175

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +    +PILR+ +RP+    + +I  L   ML  M +  G+G+AA Q+    RL+
Sbjct: 1   MTPMAIAQLGEPILRQRARPVSDATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLM 60

Query: 60  VID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +I          A + +P+V INP+I+  S +   + EGCLS+P  R  V+R   + VRY
Sbjct: 61  IIASRPNARYPDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPDNVEVRY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +D   Q Q +   G  A    HE DHL G  F+D +  
Sbjct: 121 LDTQGQPQQLSLSGFPARIFLHEFDHLEGRTFLDQVDS 158


>gi|260551188|ref|ZP_05825391.1| peptide deformylase 2 [Acinetobacter sp. RUH2624]
 gi|260405793|gb|EEW99282.1| peptide deformylase 2 [Acinetobacter sp. RUH2624]
          Length = 160

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS++  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSNEVCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 121 VKYLTLQGETIESVFHGFPARIVQHEIDHLNGILFVERIS 160


>gi|291549493|emb|CBL25755.1| peptide deformylase [Ruminococcus torques L2-14]
          Length = 165

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  +P+ K+      LI++ML+ MY   G+GLAA Q+G+L ++VV
Sbjct: 1   MAIREVREMGDDVLEKQCKPVTKMTLRTKILIEDMLDTMYEKMGVGLAAPQVGILKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +              +EGCLS+P     V R  ++ VR ++ N +
Sbjct: 61  IDVGEGPIVLINPEIVETSGE------QTGEEGCLSVPGKWGIVTRPNYVKVRALNENME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA    HE+DHL G L+++ + 
Sbjct: 115 EFEIEGEELLARAFCHEIDHLGGHLYVEKVE 145


>gi|187734744|ref|YP_001876856.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187424796|gb|ACD04075.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 226

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 15/175 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++ +  P+LR    P+  IN DI++ +D+M E +    GIGLAA Q+G   +LV I+
Sbjct: 14  ILDILQYGHPLLREECGPVVHINRDILSFLDDMQETLAQ-GGIGLAAPQVGRPIQLVTIN 72

Query: 63  LQ-------DHAHRKNPMVFINPKIITFSDDF-------SVYQEGCLSIPDYRADVKRSA 108
           +               P        + F +           Y+EGCLSI    A+V R +
Sbjct: 73  IPSTDATTTWLEVDGCPTTLSRIMPLNFINPILHPFGKKVPYREGCLSITKVYANVMRRS 132

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +       + +   +  +GLLA CLQHE+DHL+G LF D +S    D + +++ 
Sbjct: 133 CVRAVLTMMDGRTVTVKCNGLLARCLQHEVDHLHGGLFTDLVSSGDHDKVIRRLR 187


>gi|157692133|ref|YP_001486595.1| peptide deformylase [Bacillus pumilus SAFR-032]
 gi|157680891|gb|ABV62035.1| peptide deformylase [Bacillus pumilus SAFR-032]
          Length = 185

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P+LR+ +  +E     +    + +M+E + ++             G+GLAA Q
Sbjct: 6   DIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDAEMAEKFGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           I +  R++ +  +D    +      NP+I++ S   +     +            V R  
Sbjct: 66  INISKRMIAVHCEDEDGEEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVPRYQ 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+      +   I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 126 KIRVKATTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169


>gi|229019177|ref|ZP_04176010.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1273]
 gi|229025422|ref|ZP_04181837.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1272]
 gi|228735877|gb|EEL86457.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1272]
 gi|228742117|gb|EEL92284.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1273]
          Length = 184

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 6   EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108
           IG+  +++ + + D           NPKII+           +       +    V R  
Sbjct: 66  IGISKKMIAVHVTDTNGTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|254495945|ref|ZP_05108853.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254354823|gb|EET13450.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 179

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIM------NLIDNMLEVMYSTDGIGLAAVQIGV 54
           M  + +V   +  L   S P+   +  I        LI NM + M +  G+G+AA QIG 
Sbjct: 1   MTIQTVVKMGNKQLGIPSEPVVDFDPAIRSYPELTELIQNMKDTMDAKGGVGIAAPQIGY 60

Query: 55  LYRLVVIDLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
             R+++   + +    N         INP     SD+     EGCLS+P  R  V R   
Sbjct: 61  NKRVIMFGFEKNKRYPNEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGLVPRYKK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           I     D   +     A    A  +QHE DHL+G+LF   L  ++     +++ 
Sbjct: 121 IEYSGYDPEGKLITRVAADFHARIIQHECDHLDGVLFPYRLKDIRFFGYEEELE 174


>gi|229134783|ref|ZP_04263591.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST196]
 gi|228648636|gb|EEL04663.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST196]
          Length = 181

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 3   EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108
           IG+  +++ + + D           NPKII+           +       +    V R  
Sbjct: 63  IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 123 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|266624813|ref|ZP_06117748.1| peptide deformylase [Clostridium hathewayi DSM 13479]
 gi|288863310|gb|EFC95608.1| peptide deformylase [Clostridium hathewayi DSM 13479]
          Length = 149

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    +    D ILR+  + +++++  I  ++++M + ++ + +G  +AA Q+G+L RLV
Sbjct: 1   MAVLNMRYDGDEILRKKCKEVKEVDDRIREILNDMTDTLHATPNGAAIAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+     +          +I          EGCLS P+      R   + V+ +D N 
Sbjct: 61  VIDMGTGLMKLV------NPVIVEQTGEQDCIEGCLSFPEKYGRTIRPQTVIVKALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   +     +A C  HELDHL+G+ F+D ++
Sbjct: 115 EVVTLTGIDEMAKCFCHELDHLDGVCFVDKVT 146


>gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
 gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
          Length = 196

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 1   MVKKPLVIF---PDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M   P + F    DP+LR+++  +   +    +I  ++D M++V+   D +G+AA Q+GV
Sbjct: 1   MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDY 100
             R++V++ ++    +                    NP++   S   + + EGC+S+  Y
Sbjct: 61  PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A V+R   + ++ +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 121 SAQVERYDRVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171


>gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis]
 gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis]
          Length = 196

 Score = 97.9 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 1   MVKKPLVIF---PDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M   P + F    DP+LR+++  +   +    +I  ++D M++V+   D +G+AA Q+GV
Sbjct: 1   MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDY 100
             R++V++ ++    +                    NP++   S   + + EGC+S+  Y
Sbjct: 61  PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A V+R   + ++ +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 121 SAQVERYERVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171


>gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 211

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53
           M K+ ++  P+  LR+ S+ I  I  ++  LI +M        E         LAAVQ+ 
Sbjct: 21  MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 80

Query: 54  VLYRLVVID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            L R+V++    D+    +    INP+II +  + +   EGCLS+      V R   + V
Sbjct: 81  KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + ++ + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 141 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 187


>gi|229162908|ref|ZP_04290865.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           R309803]
 gi|228620790|gb|EEK77659.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           R309803]
          Length = 181

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 3   DVIREGNPILRNVAEEVSIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           IG+  +++ + + D           NPKII+ S + +     +       D    V R  
Sbjct: 63  IGISKKMIAVHVTDTNGTLYSHALFNPKIISHSVERTYLPNGEGCLSVDRDVPGYVPRYT 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 174

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64
           ++ F DP LR +   +   +  + + ID +   ++   G   LAA QI +L ++VVID  
Sbjct: 10  IIRFGDPRLRVLCSEVAVFHKGLHDKIDCIARTLHQHGGGAALAAPQIALLKQIVVIDYL 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              +       +     +         EGCLS+P +   V+R   I V Y D   +   +
Sbjct: 70  GEYYELINPQIVEASGSSIDY------EGCLSLPGFWGQVERHQRIKVSYQDRFGEVYSV 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153
            A   +A C QHE+DHL+G+LFID +S  
Sbjct: 124 EAHDRMARCFQHEIDHLSGVLFIDRMSDE 152


>gi|223043772|ref|ZP_03613815.1| polypeptide deformylase [Staphylococcus capitis SK14]
 gi|222442869|gb|EEE48971.1| polypeptide deformylase [Staphylococcus capitis SK14]
          Length = 162

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    P+L++ S+ + + +  + +L+ ++ + +Y  +   ++A QIGV  R+ +
Sbjct: 1   MTVKKLVKSTHPLLKKESKTVNQYDDQLKSLLKDLEDTLYEEEAAAISAPQIGVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  INP I ++SD+     EG +S+P+   +V RS  I ++  D N  
Sbjct: 61  I----DMELEGLLQLINPVIKSYSDEEITDLEGSVSLPNVFGEVTRSKMIVLQCNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF D  +R+
Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTDKANRI 149


>gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo]
 gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo]
          Length = 165

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   + V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSIFVVR-- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + + Y+EGCLSIP    D+ R   I + + D N +   I
Sbjct: 60  -ENKMAKPLVFINPVITETSYELNSYKEGCLSIPGVYYDLMRPKGIVINFYDENEKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169
                LA  +QHE+DHLNG+LFID+      + I  K+ K  ++ R
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKNKLLKPYMRER 160


>gi|167747469|ref|ZP_02419596.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662]
 gi|167652831|gb|EDR96960.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662]
          Length = 153

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + +    DPIL++  + + +++      +D++++ ++S+D    LAA Q G+L R++
Sbjct: 1   MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSSDNGAALAANQAGILRRMI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID + +  +    V +               EGCLS P+      R A + V  +D N 
Sbjct: 61  VIDYEGYYLKLVNPVIVES------SGSQECVEGCLSFPNRFGKTIRPARVKVEALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                   G +A C  HE+DHL+G +FID +
Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145


>gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9]
 gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9]
          Length = 175

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++   +P+LR  +  +  +  +    L+ ++ ++M S  G+G+AA Q+G   R  +
Sbjct: 3   APLEIIQLGNPLLRVPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFI 62

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +  + +    +     P + INP+++  S++     EGCLSIP  RA V R   I VRY+
Sbjct: 63  VASRPNDRYPHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRYL 122

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + +         G +A   QHELDHLNGI+F+D   +L
Sbjct: 123 NASGDVIETEFTGFIARIFQHELDHLNGIVFLDRADKL 160


>gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211]
 gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211]
          Length = 214

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 23/188 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI----------NSDIMNLIDNMLEVMYSTDGIGLAAVQI 52
             P+ ++ DPILR+ +R IE +           + +  +   MLE MY   G+GLAA Q+
Sbjct: 9   VYPIRLYGDPILRKKARAIEDLQAPLTIPGFAPAALAQVARTMLETMYDAHGVGLAAPQV 68

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIIT-------------FSDDFSVYQEGCLSIPD 99
           G+  R+ V         +     +  +++                 D    +        
Sbjct: 69  GLGVRMFVAAEYADDEDEGQETPLRSRVLREFVAINPVLEVLNKKKDSHYQEGCLSIPGI 128

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           Y   VKR   + + Y++ + Q +++ A+  LA   QHE+DHL+G  F+D L     D   
Sbjct: 129 YEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDRLPAEVTDDHR 188

Query: 160 KKMSKLVQ 167
           K ++ + +
Sbjct: 189 KDLAAMQR 196


>gi|225018698|ref|ZP_03707890.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum
           DSM 5476]
 gi|224948426|gb|EEG29635.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum
           DSM 5476]
          Length = 152

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+  D ILR+  R +   N  + +L+D++ E M+  DG+GLAA Q+GVL R VV
Sbjct: 1   MAIRTIVVDDDSILRKKCREVIDYNKRLHDLLDDLAETMHKADGVGLAAPQVGVLRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               I          EGCLS P+    V+R   +TV+  D + +
Sbjct: 61  IDVGEGVIELV------NPEIIKKSGSQNGAEGCLSYPNEFGMVERPMQVTVKAFDRDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +    LLA  + HE+DHL+GI+F D
Sbjct: 115 EFKLIGKELLARAICHEVDHLDGIVFKD 142


>gi|317471201|ref|ZP_07930569.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
 gi|316901307|gb|EFV23253.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
          Length = 153

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    DPIL++  + + +++      +D++++ ++S  +G  LAA Q G+L R++
Sbjct: 1   MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSAENGAALAANQAGILRRMI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID + +  +          +I  S       EGCLS P+      R A +TV  +D + 
Sbjct: 61  VIDHEGYYLKLV------NPVIVESSGSQECVEGCLSFPNRFGKTIRPAKVTVEALDEHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                   G +A C  HE+DHL+G +FID +
Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145


>gi|169796843|ref|YP_001714636.1| peptide deformylase 2 [Acinetobacter baumannii AYE]
 gi|213156766|ref|YP_002318427.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484319|ref|YP_002326548.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|294838372|ref|ZP_06783055.1| peptide deformylase [Acinetobacter sp. 6013113]
 gi|294859949|ref|ZP_06797718.1| peptide deformylase [Acinetobacter sp. 6013150]
 gi|301345256|ref|ZP_07225997.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301510240|ref|ZP_07235477.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594430|ref|ZP_07239438.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|169149770|emb|CAM87661.1| peptide deformylase 2 [Acinetobacter baumannii AYE]
 gi|213055926|gb|ACJ40828.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986720|gb|ACJ57019.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
          Length = 160

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 121 VKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|163941714|ref|YP_001646598.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|229013180|ref|ZP_04170324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           DSM 2048]
 gi|229061641|ref|ZP_04198980.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH603]
 gi|229168715|ref|ZP_04296436.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH621]
 gi|163863911|gb|ABY44970.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|228614727|gb|EEK71831.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH621]
 gi|228717648|gb|EEL69304.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH603]
 gi|228748130|gb|EEL97991.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           DSM 2048]
          Length = 184

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 6   EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108
           IG+  +++ + + D           NPKII+           +       +    V R  
Sbjct: 66  IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula]
          Length = 266

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+L   +R ++     +  I  +ID M+ VM +  GI L+A +IG+  R++V++
Sbjct: 67  IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 126

Query: 63  LQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                                      +NPK+   S+   ++ EGCLS+  ++A V+R  
Sbjct: 127 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 186

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V   D   +   I A G  A  LQHE DHL+G L++D +  
Sbjct: 187 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVP 230


>gi|212639721|ref|YP_002316241.1| peptide deformylase [Anoxybacillus flavithermus WK1]
 gi|212561201|gb|ACJ34256.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1]
          Length = 184

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48
             K ++    P LR+V+  +    + +   ++ ++LE                  GIGLA
Sbjct: 3   TMKDIIKDGHPTLRKVAEEVPLPPSEEDRRILASLLEYVKMSQDPELAKTYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  R++ + + D     +     NPKI++ S +       +            V 
Sbjct: 63  APQINVSKRMIAVHVTDEKGTLHSYALFNPKIVSHSVEMCYLTSGEGCLSVDKAIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   ITV       +   +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 123 RYMRITVTGTTLEDETVKLRLKGLPAIVFQHEIDHLNGIMFYDHINK 169


>gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
 gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
          Length = 193

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M   P  V   DP+L   ++ +   +     +  +ID M++VM    G+GLAA QIGV  
Sbjct: 1   MAVTPGTVKAGDPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPL 60

Query: 57  RLVVIDLQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           R++V++         P               + INPKI   S   +++ EGCLS+  YRA
Sbjct: 61  RIIVLEDTQEYISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRA 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V+R   + V  +D N     + A G  A  LQHE DHL G L++D +  
Sbjct: 121 VVERHLDVEVSGLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRMVP 170


>gi|184157242|ref|YP_001845581.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|294840985|ref|ZP_06785668.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. 6014059]
 gi|183208836|gb|ACC56234.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076693|gb|ABO11393.2| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978]
 gi|322507127|gb|ADX02581.1| Peptide deformylase 2 [Acinetobacter baumannii 1656-2]
 gi|323517106|gb|ADX91487.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 160

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 121 VKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|16803091|ref|NP_464576.1| peptide deformylase [Listeria monocytogenes EGD-e]
 gi|47096139|ref|ZP_00233739.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854]
 gi|224500304|ref|ZP_03668653.1| peptide deformylase [Listeria monocytogenes Finland 1988]
 gi|224502635|ref|ZP_03670942.1| peptide deformylase [Listeria monocytogenes FSL R2-561]
 gi|254828428|ref|ZP_05233115.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165]
 gi|254830180|ref|ZP_05234835.1| peptide deformylase [Listeria monocytogenes 10403S]
 gi|254898776|ref|ZP_05258700.1| peptide deformylase [Listeria monocytogenes J0161]
 gi|254911735|ref|ZP_05261747.1| peptide deformylase [Listeria monocytogenes J2818]
 gi|254936061|ref|ZP_05267758.1| polypeptide deformylase [Listeria monocytogenes F6900]
 gi|284801383|ref|YP_003413248.1| peptide deformylase [Listeria monocytogenes 08-5578]
 gi|284994525|ref|YP_003416293.1| peptide deformylase [Listeria monocytogenes 08-5923]
 gi|23396542|sp|Q8Y866|DEF_LISMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes EGD-e]
 gi|47015488|gb|EAL06421.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854]
 gi|258600823|gb|EEW14148.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165]
 gi|258608650|gb|EEW21258.1| polypeptide deformylase [Listeria monocytogenes F6900]
 gi|284056945|gb|ADB67886.1| peptide deformylase [Listeria monocytogenes 08-5578]
 gi|284059992|gb|ADB70931.1| peptide deformylase [Listeria monocytogenes 08-5923]
 gi|293589685|gb|EFF98019.1| peptide deformylase [Listeria monocytogenes J2818]
          Length = 183

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|319941618|ref|ZP_08015942.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319804848|gb|EFW01702.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   +P+L + + P+    +  +  L+ +M + M++  G+G+AA Q+GV  R++ 
Sbjct: 1   MVLEVMRLGEPVLMKEALPVRDFGSPRLRKLVADMWDTMHAEGGVGIAAPQVGVSERIIC 60

Query: 61  IDLQDHAHRKNPMVFINPKIIT---------FSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
              +  +   +        +I           +DD+    EGCLS+P  R  V R+  I 
Sbjct: 61  FGFEASSRYPDAPAVPQTVLINPTVELLLEGTADDWEDGWEGCLSVPGMRGVVPRARRIR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                 + +     A+   A  +QHE DHL GI++   +   
Sbjct: 121 YTGFGLDGETIEREAEEFHARVVQHEFDHLKGIVYPMRIKDW 162


>gi|239503010|ref|ZP_04662320.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB900]
          Length = 160

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+  + P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLTAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 121 VKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|323487022|ref|ZP_08092334.1| peptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323692064|ref|ZP_08106311.1| peptide deformylase [Clostridium symbiosum WAL-14673]
 gi|323399670|gb|EGA92056.1| peptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323503864|gb|EGB19679.1| peptide deformylase [Clostridium symbiosum WAL-14673]
          Length = 159

 Score = 96.8 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  +P++++      LI++M E MY  +G+GLAA Q+G+  ++VV
Sbjct: 1   MAIRSIRTMGDEVLTKECKPVKEMTEHTAELIEDMFETMYEANGVGLAAPQVGIRKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +    I  ++      EGCLS+P     V R   + V+ ++   +
Sbjct: 61  IDVDDGN-----QYVLINPEIVETEGSQTGSEGCLSVPGKTGVVTRPEKVKVKALNEKME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
              +  +GLLA  + HE DHL G L++
Sbjct: 116 EFELEGEGLLARAICHECDHLKGQLYV 142


>gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
          Length = 159

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + +L   +  +   E     +  L   M   M   +G+G+AA Q+ +  
Sbjct: 1   MSISLPVAQRGEKVLTLKAAEVSENEFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A     +V +NP+I+ FS + S+ +EGCLS+ D R  V+R+  + 
Sbjct: 61  RIIIVASRSNPRYPDAPEMEAVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAETVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + Y+    +       G  A  +QHE+DHLNGILF++ L
Sbjct: 121 LCYLTLEGEPVETIYKGFPARIIQHEIDHLNGILFVERL 159


>gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 191

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53
           M K+ ++  P+  LR+ S+ I  I  ++  LI +M        E         LAAVQ+ 
Sbjct: 1   MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 60

Query: 54  VLYRLVVID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            L R+V++    D+    +    INP+II +  + +   EGCLS+      V R   + V
Sbjct: 61  KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + ++ + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 121 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 167


>gi|260555892|ref|ZP_05828112.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|260410803|gb|EEX04101.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606]
          Length = 160

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSEMCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHL+GILF++ +S
Sbjct: 121 VKYLTLQGETVETIFHGFPARIVQHEVDHLDGILFVERIS 160


>gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays]
 gi|194701558|gb|ACF84863.1| unknown [Zea mays]
          Length = 256

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 1   MVKKP-LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M+  P  V   DP+L   ++ +   + ++  +  +ID M++VM    G+GLAA QIGV  
Sbjct: 64  MMVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPL 123

Query: 57  RLVVIDLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRA 102
           R++V++         P                 INPKI + S   +++ EGCLS+  YRA
Sbjct: 124 RIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRA 183

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            V+R   + V  +D N     + A G  A  LQHE DHL G L++D +
Sbjct: 184 VVERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKM 231


>gi|289803413|ref|ZP_06534042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 135

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 85/138 (61%), Gaps = 3/138 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHEL 138
              + ADGLLA C+QHE+
Sbjct: 118 PFELEADGLLAICIQHEM 135


>gi|75762798|ref|ZP_00742622.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489709|gb|EAO53101.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 221

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QIGV  +++ + + D           NPKII+           +       +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 145

 Score = 96.8 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 4/143 (2%)

Query: 28  IMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           +  LID++L+ +Y + +GIGLAA Q+G    +VVIDL D+  +      +    +    +
Sbjct: 4   VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQPL---VLINPKVVSGSN 60

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
             + QEGCLS+PDY ADV+R   + V  +D   +   I     LA  +QHE+DHL+G LF
Sbjct: 61  KEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLF 120

Query: 147 IDHLSRLKRDMITKKMSKLVQLR 169
           ID+LS LK+ M  KK+ K V+ R
Sbjct: 121 IDYLSPLKQQMAMKKVKKHVKNR 143


>gi|120597766|ref|YP_962340.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|146294101|ref|YP_001184525.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|120557859|gb|ABM23786.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|145565791|gb|ABP76726.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|319427442|gb|ADV55516.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 181

 Score = 96.8 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+  + + ILR+ +  + + ++ + +L + M   M +  G+G+AA Q+     + ++
Sbjct: 12  APLPIAQYGEAILRQTAIEVRQFDAKLTHLAEQMSASMMAAKGVGIAAPQVHSPLAMFIM 71

Query: 62  -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                     A    P+V +NP+I+  SD+ +  +EGCLS+P+ R  + R   I VRY +
Sbjct: 72  ASRPNARYPDAPHMAPVVVVNPQILNVSDELNAGEEGCLSVPEQRFIIPRHDRIEVRYQN 131

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              + Q     G +A   QHE DHL GI  ++ 
Sbjct: 132 LQGEWQQAVLSGFIARIFQHEFDHLQGITLLER 164


>gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC]
 gi|33301049|sp|Q823U4|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC]
          Length = 186

 Score = 96.8 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +   ILRR +  I +I      L+ +M E M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRELEYYGSHILRRKADIIPEITDATRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVM 60

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P V+INP +   S+D  + +EGCLSIP  RADV R   ITV  +
Sbjct: 61  CVEGETEEGDLIFCDFPKVYINPVLSNPSEDLVIGREGCLSIPGLRADVYRPQSITVTAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHL+G+L+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173


>gi|152976388|ref|YP_001375905.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025140|gb|ABS22910.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
          Length = 208

 Score = 96.8 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+    +  +I+         M+E      GIGLAA Q
Sbjct: 30  DVIREGNPILRTVAEEVQLPASEEDTQTLKEMIEFVINSQNPEMVEKYNLRPGIGLAAPQ 89

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           IG+  R++ I + D           NPKII+ S + +     +       +    V R A
Sbjct: 90  IGISKRMIAIHVTDTNETLYSYALFNPKIISHSVERTYLPAGEGCLSVDREVPGYVPRYA 149

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV+    + +   +   GL A   QHE+DHLNG++F DH++
Sbjct: 150 RITVKATTVDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 192


>gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 225

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V    P+LR+ + P +    +  +  L+  M E M++  G+GLAA QIGV  RL VI
Sbjct: 20  LPIVSAGLPVLRQAALPYDGQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVI 79

Query: 62  DLQDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP      D  + + EGCLS+P ++A V R   I 
Sbjct: 80  EDPAEVATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPERIR 139

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +R  D   +       G  A  +QHE DHL+G+L++D
Sbjct: 140 LRGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176


>gi|325121302|gb|ADY80825.1| peptide deformylase 2 [Acinetobacter calcoaceticus PHEA-2]
          Length = 160

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+  + P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLTAAPVSVNELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A     +V +NP+I+ FSD+  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 121 VKYLTLQGETVETNFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|159900945|ref|YP_001547192.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893984|gb|ABX07064.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 211

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 19/188 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   DP    +LR  ++ I   +  +  L+D+M+E M    G+G+AA Q+GV  
Sbjct: 1   MAVRRVLQIEDPTDAVVLRAKAKRITSFDQSLAGLVDDMIETMREARGVGIAAPQVGVSR 60

Query: 57  RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           R+VVI+                      V +NP+II  S++  + QEGCLS+P     V 
Sbjct: 61  RVVVIEEPAQYEEHEDGTQTQIAPAVLYVMVNPEIIKASEETHMLQEGCLSLPGRYTKVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA----DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           R+ ++T++Y D   + Q +      D  +    QHELDHL+GI+F D ++   + +  +K
Sbjct: 121 RNKWVTIKYYDLKGREQRLRHIPAEDYKVGHIAQHELDHLDGIMFTDRMTEESKLVDYRK 180

Query: 162 MSKLVQLR 169
            S+  +L+
Sbjct: 181 ESESARLK 188


>gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
 gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
          Length = 172

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ + PI   E  +S +  LI  M  +M     +G+AA QIG+  R++V   +   
Sbjct: 9   DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFSTEYTK 68

Query: 68  HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            RK      +  +I       S +     EGCL+  +   +V R+  I     D +    
Sbjct: 69  RRKPEYPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNKI 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              A GL A  LQHE+DHL+G LF+D +  
Sbjct: 129 TKTASGLEARILQHEIDHLDGFLFLDRVED 158


>gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P LR+ + P + +I  + +  LI+ M +VM+   G+GLAA Q+G+  +L V++
Sbjct: 30  PIVQAGHPALRQKAAPFDGQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIPLQLAVLE 89

Query: 63  LQDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            +     +          + +  +NP       D + + EGCLS+   +A V R   + +
Sbjct: 90  DKYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGLQAVVSRPQAVLL 149

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            ++  +   +     G  A  +QHE DHLNGIL++D 
Sbjct: 150 DFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVDR 186


>gi|255630300|gb|ACU15506.1| unknown [Glycine max]
          Length = 221

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 72/139 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDP LR  ++ I   +  +  L+  M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 75  LKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNP 134

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP++  +S   +++ EGCLS P   ADVKR   + +     N     
Sbjct: 135 VGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARGINGTMFS 194

Query: 124 IYADGLLATCLQHELDHLN 142
           +    L A   QHE DHL 
Sbjct: 195 VNLSDLPARIFQHEFDHLQ 213


>gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 200

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   +V   +P+LR+ +R +      + ++  LI  M + M    G+GLAA Q+GV  RL
Sbjct: 1   MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60

Query: 59  VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           VV++ +   H                   V INP ++        + EGCLS+  + A V
Sbjct: 61  VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R+  + V  +D +     + A G  A  LQHE DHL G L++D +  
Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168


>gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa]
          Length = 249

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR V+ P+E       ++  L+  +++VM     +GL+A Q+GV  +++ ++  
Sbjct: 75  QVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 134

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      VF+NP +         + EGC S+  + A V R   +
Sbjct: 135 DALFHACAPRLREIRQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 194

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D   +  +  A G  A  +QHE+DHL G+LFID +  
Sbjct: 195 QISGLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKMDS 236


>gi|325261897|ref|ZP_08128635.1| peptide deformylase [Clostridium sp. D5]
 gi|324033351|gb|EGB94628.1| peptide deformylase [Clostridium sp. D5]
          Length = 158

 Score = 96.0 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D IL +  + + K+      LI++ML+ MY   G+GLAA Q+GVL  +V 
Sbjct: 1   MAIREVRMIGDEILTKQCKEVTKVTLRTKMLIEDMLDTMYEKMGVGLAAPQVGVLKNIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +   +I  +      +EGCLS+P     V R   + VR ++ + +
Sbjct: 61  IDVGEG------PIVLINPVIIEASGEQTGEEGCLSVPGKWGIVTRPDHVKVRALNEDME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              +  +GLLA    HE+ HL+G L++D +
Sbjct: 115 EFEMEGEGLLARAFCHEIAHLSGELYVDRV 144


>gi|46907283|ref|YP_013672.1| peptide deformylase [Listeria monocytogenes str. 4b F2365]
 gi|47092943|ref|ZP_00230724.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858]
 gi|226223669|ref|YP_002757776.1| formylmethionine deformylase [Listeria monocytogenes Clip81459]
 gi|254823676|ref|ZP_05228677.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194]
 gi|254853062|ref|ZP_05242410.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503]
 gi|254933401|ref|ZP_05266760.1| polypeptide deformylase [Listeria monocytogenes HPB2262]
 gi|254992568|ref|ZP_05274758.1| peptide deformylase [Listeria monocytogenes FSL J2-064]
 gi|255522443|ref|ZP_05389680.1| peptide deformylase [Listeria monocytogenes FSL J1-175]
 gi|300765902|ref|ZP_07075875.1| peptide deformylase [Listeria monocytogenes FSL N1-017]
 gi|67460118|sp|Q721B5|DEF_LISMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645183|sp|C1L1X2|DEF_LISMC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|46880550|gb|AAT03849.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018690|gb|EAL09442.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858]
 gi|225876131|emb|CAS04837.1| Putative formylmethionine deformylase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606409|gb|EEW19017.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503]
 gi|293584962|gb|EFF96994.1| polypeptide deformylase [Listeria monocytogenes HPB2262]
 gi|293592898|gb|EFG00659.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194]
 gi|300513364|gb|EFK40438.1| peptide deformylase [Listeria monocytogenes FSL N1-017]
 gi|328466823|gb|EGF37937.1| peptide deformylase [Listeria monocytogenes 1816]
          Length = 183

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 238

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIGVLYRL 58
           +   P+  LR+ S+ I  I  ++  LI +M        E         LAAVQ+  L R+
Sbjct: 53  IGPHPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVDKLERI 112

Query: 59  VVID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V++    D+    +    INP+II +  + +   EGCLS+      V R   + V+ ++ 
Sbjct: 113 VIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNE 172

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 173 DGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 214


>gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 218

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  +RP E    +  +  LI+ M E M++  G+GLAA QIG+  R+ V++
Sbjct: 25  PIVQAGDPVLRAAARPYEGELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVVE 84

Query: 63  L--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                                    V +NP      D+ + + EGCLS+  ++A V R+ 
Sbjct: 85  DGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVARAL 144

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            I +R  D           G  A  +QHE DHL+G+L++D 
Sbjct: 145 RIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLDR 185


>gi|16800112|ref|NP_470380.1| peptide deformylase [Listeria innocua Clip11262]
 gi|23396547|sp|Q92CX8|DEF_LISIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua Clip11262]
 gi|313619530|gb|EFR91206.1| peptide deformylase [Listeria innocua FSL S4-378]
 gi|313624273|gb|EFR94321.1| peptide deformylase [Listeria innocua FSL J1-023]
          Length = 183

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNG++F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINKE 170


>gi|319650481|ref|ZP_08004621.1| Def2 protein [Bacillus sp. 2_A_57_CT2]
 gi|317397662|gb|EFV78360.1| Def2 protein [Bacillus sp. 2_A_57_CT2]
          Length = 192

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +V   DPILR V++ +   +  +    +  M++ + ++             GIGL+
Sbjct: 11  TMKDIVREGDPILREVTKEVTVPLTEEDRGTLIAMMQYLKNSQDPAIAKKYGLRPGIGLS 70

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QIG+  R+      +          INPKII+ S         +       D +  V 
Sbjct: 71  ANQIGLNKRMFTAYFTNEKAEPQEYFVINPKIISHSVGVIFLPEGEGCLSVDRDVKGYVP 130

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   I V+  +   +   +   G+ A  +QHE+DHLNGI+F D ++ 
Sbjct: 131 RYERIKVKAHNLEGEEVTLRFKGIPAIIMQHEIDHLNGIMFYDRINS 177


>gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
 gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
 gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b]
          Length = 172

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ + PI +    +S +  LI  M  +M     +G+AA QIG+  R++V       
Sbjct: 9   DPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGTDYTK 68

Query: 68  HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            RK      +  +I       S +     EGCL+  +   +V R+  I     D +    
Sbjct: 69  RRKPEYPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRI 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              A GL A  LQHE+DHL+G LF+D +  
Sbjct: 129 TKKASGLEARILQHEIDHLDGFLFLDRVED 158


>gi|315302541|ref|ZP_07873376.1| peptide deformylase [Listeria ivanovii FSL F6-596]
 gi|313629103|gb|EFR97401.1| peptide deformylase [Listeria ivanovii FSL F6-596]
          Length = 183

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR+V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALRKVASEVTFPLSDEEKKLGREMLEFLINSQDEEVAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D +     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDEDGAPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINKE 170


>gi|293608925|ref|ZP_06691228.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829498|gb|EFF87860.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 160

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A     +V +NP+I+ FSD+  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNLRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 121 VKYLTLQGETVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|288553244|ref|YP_003425179.1| peptide deformylase [Bacillus pseudofirmus OF4]
 gi|288544404|gb|ADC48287.1| peptide deformylase [Bacillus pseudofirmus OF4]
          Length = 179

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 17/177 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K +V    P+LR V++ +    + +    +  ML            E      G+G+A
Sbjct: 3   TMKDVVREGHPVLREVAKEVPLPASKEDKETLQRMLDFVINSQDPELSEKYQLRPGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QIG+  R+  + + D       M   NPKII+ S + +     +       D    V 
Sbjct: 63  APQIGIAKRMFAVHVADDNDNLYSMGLFNPKIISHSVEETHLESGEGCLSVDRDIPGIVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           R A ITV+  + + +   +   GL++   QHE+DHLNGI+F D +   K D   K++
Sbjct: 123 RYARITVKGTNLDGEEVTLRLRGLVSIVFQHEMDHLNGIMFYDRIEGFK-DPFKKEL 178


>gi|154505954|ref|ZP_02042692.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149]
 gi|153793972|gb|EDN76392.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P+ K+      LI++ML+ MY   G+GLAA Q+GVL ++VV
Sbjct: 1   MAIREVRIMGDDILEKQCKPVTKMTMRTKILIEDMLDTMYEKYGVGLAAPQVGVLKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          I              +EGCLS+P     V R  ++ VR ++   +
Sbjct: 61  IDVGEGPIVLINPEIIETSGE------QTGEEGCLSLPGKWGIVTRPNYVKVRALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +GLLA    HE+DHL G ++++ +  
Sbjct: 115 EVELEGEGLLARAFCHEIDHLAGHMYVERVED 146


>gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 214

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P +       +   ++ +   M +  G+GLAA Q+GV  R+ VI
Sbjct: 24  LPIVAAGDPVLRRPAEPFDGQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARHAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +   D + +      +G  A  +QHE DHL+G+L++D 
Sbjct: 144 LVARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDR 181


>gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 172

 Score = 95.2 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+ + PI +    +S +  LI  M  +M     +G+AA QIG+  R++V       
Sbjct: 9   NPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGTDYTK 68

Query: 68  HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            RK      +  +I       S +     EGCL+  +   +V R+  I     D +    
Sbjct: 69  RRKPEYPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRI 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              A GL A  LQHE+DHL+G LF+D +  
Sbjct: 129 TKKASGLEARILQHEIDHLDGFLFLDRVED 158


>gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool]
          Length = 374

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 3   KKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           KK +++ P P+LR  S P  + +  +   +   +  +MY   GIGLAA Q+G+  +++V 
Sbjct: 223 KKEVLVAPHPLLRLPSHPEADWMAKETKAIARELFAIMYRDGGIGLAAPQVGLSLQMIVW 282

Query: 62  DLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +            VF+NP+I++ S       EGCLS+P   A V+R     VRY      
Sbjct: 283 NPTGGFREVSQERVFLNPRILSLSGPLVSDVEGCLSVPGVFAPVERPMHARVRYTSLEGD 342

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +   GL A  +QHE+DHL+GILF+D   
Sbjct: 343 QHEVNLSGLEARVVQHEIDHLHGILFVDRAK 373


>gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni]
 gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni]
          Length = 241

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +      + +I  +++ M++V+   + +G+AA QIGV  R++ ++ +
Sbjct: 56  QVGDPVLRQQAALVPPEHLDSPEIKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFK 115

Query: 65  DHAHRKNPMVFINPKIITFSDDFS--------------VYQEGCLSIPDYRADVKRSAFI 110
               ++ P      ++++                     + EGC+S+  Y  +V+R   +
Sbjct: 116 KEIRKELPEFTYQARLMSELPLTVLINPELTVTSYVKLKHPEGCMSVRGYSGEVERYEAV 175

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +   D       I   G  A   QHE+DHL+G L+ D + R
Sbjct: 176 NLNGHDRLGVKTQISLTGWNARIAQHEMDHLDGKLYTDRMDR 217


>gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 218

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P E       +   +  +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 27  LPIVAAGDPVLRRGAEPFEGQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVI 86

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP      ++ + + EGCLS+P ++A V R A + 
Sbjct: 87  EDPAPVPEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARHARVR 146

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R +D           G  A  +QHE DHL+G L++D    
Sbjct: 147 LRGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDRAEP 187


>gi|315281776|ref|ZP_07870335.1| peptide deformylase [Listeria marthii FSL S4-120]
 gi|313614586|gb|EFR88171.1| peptide deformylase [Listeria marthii FSL S4-120]
          Length = 183

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +      A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|226952063|ref|ZP_03822527.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244]
 gi|226837220|gb|EEH69603.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244]
          Length = 163

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL   +  +   + NS+ ++ L   M   M   +G+G+AA Q+ +  
Sbjct: 3   MSVVLPVAQRGEEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISK 62

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS    + +EGCLS+PD R  V+R+  I 
Sbjct: 63  RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSQTTCLGEEGCLSVPDQRGFVERAQTIK 122

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           VRY     +      +G  A  +QHE+DHL+G+LF++ +S
Sbjct: 123 VRYYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162


>gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG6]
 gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6]
          Length = 185

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 16/177 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P     L+   RP++  + ++  L+ +M E M  + G+GLAA Q+G+  
Sbjct: 1   MSTRRILRIDNPEDKKTLKMQCRPVKLPDRNLKQLVADMFETMRKSHGVGLAAPQVGLPI 60

Query: 57  RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +L +I++     +++             V INP+I+  S D  +  EGCLS+P +   V 
Sbjct: 61  QLCIIEIPAEIEQRDDGTEVEVAPAEEYVLINPRIVKTSGDEIMRDEGCLSLPGWYGMVP 120

Query: 106 RSAFITVRYMDCNAQHQII-YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           R +++TV Y D N +   +  ADGLL   +QHE+DHL+G+LF + +  L       K
Sbjct: 121 RHSWVTVEYQDFNGKQHRLRKADGLLGWAIQHEVDHLHGVLFTERIRDLSTLRDVSK 177


>gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 188

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   +V   +P+LR+ +R +      + ++  LI  M + M    G+GLAA Q+GV  RL
Sbjct: 1   MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60

Query: 59  VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           VV++ +   H                   V INP ++        + EGCLS+  + A V
Sbjct: 61  VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R+  + V  +D +     + A G  A  LQHE DHL G L++D +  
Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168


>gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
           10542]
 gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
           10542]
          Length = 211

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P+V    P+LR+ +   + ++   +  L+D+M   M    G+GLAA QIG+  ++ V+
Sbjct: 22  VLPIVQAGHPVLRQPAAAYDGQLGDLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVL 81

Query: 62  DLQDHAHRKNPMV--------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   ++P           +NP      D+   + EGCLS+  Y+A V R   + + 
Sbjct: 82  HDAGSTDPEDPRERTPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHRTVRLT 141

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             D   +       G  A  +QHE DHL G L+IDH
Sbjct: 142 GQDETGRALDEQLTGWPARIVQHETDHLRGQLYIDH 177


>gi|294498110|ref|YP_003561810.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|295703459|ref|YP_003596534.1| peptide deformylase [Bacillus megaterium DSM 319]
 gi|294348047|gb|ADE68376.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|294801118|gb|ADF38184.1| peptide deformylase [Bacillus megaterium DSM 319]
          Length = 184

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++    P LR V++ +    + +   ++ ++LE + ++              IGLAA Q
Sbjct: 6   DIIQDGHPTLREVAKEVPLPASEEDKKILHSLLEYVKNSQDPEIAAKYGLRSGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           I V  R++ + + D   +       NPKII+ S + +     +       D    V R A
Sbjct: 66  INVSKRMIGVHVTDEKGKLYSYALFNPKIISHSVEKTYLTGGEGCLSVDQDIPGFVPRYA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ITV+      +   I   GL A   QHE+DHL+GI+F D++++ 
Sbjct: 126 RITVKGTTLEGEEVKIRLKGLPAVVFQHEIDHLDGIMFYDYINKE 170


>gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644]
 gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644]
          Length = 230

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-- 58
           +P++    P LR+ +R +E           LI +M + +    G+GLA  QIGV  R+  
Sbjct: 20  RPILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVIL 79

Query: 59  ---VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +            FINP I+  S       EGCLSIP   A V R   + + Y+
Sbjct: 80  AGAFPSERDPSRPNHPVRAFINPVIVARSSQVGAAYEGCLSIPGILARVVRPHAVEIEYL 139

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           D NA  + + A+G LA  LQHE+DHL+G+L +DH
Sbjct: 140 DLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDH 173


>gi|289434312|ref|YP_003464184.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170556|emb|CBH27096.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313633912|gb|EFS00628.1| peptide deformylase [Listeria seeligeri FSL N1-067]
          Length = 183

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH++  
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINSE 170


>gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|119936845|ref|XP_001251630.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|296478169|gb|DAA20284.1| peptide deformylase-like [Bos taurus]
          Length = 250

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR V+ P+E       ++  L++ +++VM     +GL+A Q+GV  +++ ++  
Sbjct: 76  QVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 135

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      VF+NP +         + EGC S+  + A V R   +
Sbjct: 136 ETLFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 195

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D   +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 196 QISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 237


>gi|325955362|ref|YP_004239022.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323437980|gb|ADX68444.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 223

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHAHRK 70
           ILR  S  ++  +S +  L D ML  +   +  G  +AA QIG+    V I   D   + 
Sbjct: 61  ILRTKSIDLDPTDSSVKKLADRMLATVLDEETRGVGIAAPQIGINRNAVWIQRFDQKDQP 120

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
               FINPKI  +S      +EGCLSIPD   +V RS  I + + D + Q      +G  
Sbjct: 121 F-QFFINPKITWYSSLLQKGREGCLSIPDTIGNVVRSYAIRIEFYDLDGQFHDEVIEGFT 179

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A   QHE+DHLNG+LF D L   ++   TK
Sbjct: 180 AVIAQHEVDHLNGVLFTDRLQEQEKTTYTK 209


>gi|83855042|ref|ZP_00948572.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842885|gb|EAP82052.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 145

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 23  KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82
           +IN +I  L D+M++ M +  G+GLAA QIGV  ++ V+D      R   +   NP +I 
Sbjct: 3   EINDEIRALWDDMIDTMDAMPGVGLAAPQIGVSLQVAVVDA--SQARDKRIRLANPVVID 60

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            S   + Y+E   ++P   A ++R   + VRY+D           GL AT +QH++DHL 
Sbjct: 61  ASAIMNEYEEASPNLPGISAKIRRPRGVKVRYLDEQGATVTRDFVGLEATSVQHQIDHLA 120

Query: 143 GILFIDHLSRLKRDMITKKMSKLV 166
           G +F+D+LS+ +RDM+ +K  K  
Sbjct: 121 GKMFVDNLSKTRRDMLLRKARKYK 144


>gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis
           carolinensis]
          Length = 236

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR ++ P+E       D+  LI  ++ +M     + L+A Q+G+  ++ V +  
Sbjct: 62  QVGDPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYP 121

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                ++P                FINP +         + EGC S+  + A V R   +
Sbjct: 122 TRLLEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFLAV 181

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V  ++   +     A G  A  +QHE+DHL GIL++D +  
Sbjct: 182 QVAGLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRMES 223


>gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 192

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 1/161 (0%)

Query: 6   LVIFPDPILRRV-SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +  +P P LRRV + PI + +         ML +MY + G+GLAA QIG+   + V +  
Sbjct: 15  ITEYPRPALRRVPNTPISQFDDAFQTKAKEMLMIMYESKGVGLAAPQIGLNENVFVYNPS 74

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D  + +  +        +            +   +    V RSA+I   Y +   Q    
Sbjct: 75  DSKNMERIVCNPKITKYSEEVIVEQEGCLSMRSDEVAGQVARSAWIECEYENEEGQKVRR 134

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 A   QHE DHL GIL  D      R+   + ++ L
Sbjct: 135 RLKDFEARVFQHEYDHLKGILCYDRFPPEDREAAQENINTL 175


>gi|313638473|gb|EFS03653.1| peptide deformylase [Listeria seeligeri FSL S4-171]
          Length = 183

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH++
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHIN 168


>gi|113971372|ref|YP_735165.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886056|gb|ABI40108.1| peptide deformylase [Shewanella sp. MR-4]
          Length = 181

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
            P+ +  + IL+  +  +   ++ +  L + M   M +  G+G+AA Q+     L ++  
Sbjct: 14  LPIAVVGEAILKEQAVEVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMAS 73

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              +    A   +P+V +NP+I++ S D    +EGCLS+P  R  + R   I VRY +  
Sbjct: 74  RPNERYPDAPLMDPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLA 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160
            Q Q     G +A   QHE DHL GI  ++      ++ M  +
Sbjct: 134 GQWQRSELTGFIARIFQHEFDHLQGITLLERSQMPEQKHMALE 176


>gi|253577418|ref|ZP_04854734.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843218|gb|EES71250.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 193

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            +V   DPILR V+ P+      +    +  ML+ + ++              +GL+A Q
Sbjct: 14  DIVREGDPILRVVTEPVSIPPTEEDREEMAAMLQFLKNSQDPEMSKKYKLRAGVGLSANQ 73

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           IG+  R+    L D   +  P+   NPKII+ S   +     +         +  V R  
Sbjct: 74  IGLNKRMFAALLMDENGKDRPLALYNPKIISHSQAMTYLPESEGCLSVDRTVQGFVPRYE 133

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + V+  D       +   G  A  +QHE+DHLNGI+F DH++  
Sbjct: 134 KVQVKAYDDEGNEIKLRFKGFDAIVMQHEIDHLNGIMFYDHINPE 178


>gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP]
 gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP]
          Length = 220

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 24/172 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DP+LRR +RP++  +           +  + D MLE M++  G+GLAA Q+G
Sbjct: 7   IYPIRLYGDPVLRRKARPLQHTDTLQVPGFAPQTLREVADTMLETMFAARGVGLAAPQVG 66

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQEGCLSIP 98
           +  R+ V    D    +N       K                I    D S  +       
Sbjct: 67  LGVRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKSETEGCLSIPD 126

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            Y   V R+  + V Y D   Q Q + A+  LA   QHE DHL+G LF+DHL
Sbjct: 127 IYEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHL 178


>gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 223

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P+V   DP+LR  + P   ++   +  L + M   M++  G+GLAA Q+G+   L V+
Sbjct: 29  VLPIVQSGDPVLRTPAAPYTGQLGDLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVV 88

Query: 62  DLQDHAHRKNPMV------FINPKIITFSD-------DFSVYQEGCLSIPDYRADVKRSA 108
           + + +                NP     ++           + EGCLSI  + A V R  
Sbjct: 89  EDRGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHH 148

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +   D +         G  A  +QHE DHL G L++DH   
Sbjct: 149 RVRLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDHAVP 192


>gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49]
 gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49]
 gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG]
 gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii]
          Length = 353

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 4   KPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             ++  P  +LR  + P  +    +   L  ++L VMY   G+GLAA Q+GV  +++V +
Sbjct: 185 LDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWN 244

Query: 63  LQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       VF+NP++++         EGCLS+P   A V+R     VRY       
Sbjct: 245 PTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQ 304

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +     GL A  +QHE+DHL+GILF+D + R +R
Sbjct: 305 REATLSGLEARVVQHEIDHLHGILFVDRVHRGER 338


>gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 214

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P +       +   ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 24  LPIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +     +NP         + + EGCLS+P Y+A V R A + 
Sbjct: 84  EDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   D + +       G  A  +QHE+DHL+G+L++D    
Sbjct: 144 LTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 184


>gi|239927233|ref|ZP_04684186.1| peptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 205

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P +       +   ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 15  LPIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVI 74

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +     +NP         + + EGCLS+P Y+A V R A + 
Sbjct: 75  EDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVR 134

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   D + +       G  A  +QHE+DHL+G+L++D    
Sbjct: 135 LTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 175


>gi|217964856|ref|YP_002350534.1| peptide deformylase [Listeria monocytogenes HCC23]
 gi|290893798|ref|ZP_06556777.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071]
 gi|254767592|sp|B8DCF7|DEF_LISMH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217334126|gb|ACK39920.1| peptide deformylase [Listeria monocytogenes HCC23]
 gi|290556625|gb|EFD90160.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071]
 gi|307570585|emb|CAR83764.1| polypeptide deformylase [Listeria monocytogenes L99]
 gi|313609509|gb|EFR85061.1| peptide deformylase [Listeria monocytogenes FSL F2-208]
          Length = 183

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEEMAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +      A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|229086539|ref|ZP_04218711.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-44]
 gi|228696856|gb|EEL49669.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-44]
          Length = 184

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +    S+     +  +I+         M+E      GIG+AA Q
Sbjct: 6   DVIREGNPILRAVAEEVPLPASEADLRTLKEMIEFVINSQNPEMVEKYNLRPGIGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           IG+  R++ + + D           NPKII+ S + +     +       +    V R  
Sbjct: 66  IGISKRMIAVHVTDANETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV+    + +   +   GL A   QHE+DHLNG++F DH++
Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168


>gi|117919351|ref|YP_868543.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|117611683|gb|ABK47137.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 176

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
            P+ +  + IL++ +  +   +  + +L   M+  M    G+G+AA Q+     L ++  
Sbjct: 14  LPIALVGEAILKQQADEVRDFDEKLSHLASQMVASMVEAKGVGIAAPQVHSPLALFIMAS 73

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              +    A   +P+V +NP+I++ S +    +EGCLS+P  R  + R   I VRY D  
Sbjct: 74  RPNERYPDAPLMDPVVVVNPQILSASAELVSGEEGCLSVPGQRFSIWRHQTIVVRYQDLA 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160
              Q     G +A   QHE DHL GI  ++      ++ M  +
Sbjct: 134 GHWQQTELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMARR 176


>gi|321315214|ref|YP_004207501.1| peptide deformylase [Bacillus subtilis BSn5]
 gi|320021488|gb|ADV96474.1| peptide deformylase [Bacillus subtilis BSn5]
          Length = 184

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52
           +V    P LR  + P+E          + +M+E                  G+GLAA QI
Sbjct: 7   IVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQI 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            +  R++ +  +D + +       NPKI++ S + S     +            V R + 
Sbjct: 67  NIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVPRYSR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      ++  I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 127 IRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|52785431|ref|YP_091260.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|319646166|ref|ZP_08000396.1| peptide deformylase [Bacillus sp. BT1B_CT2]
 gi|52347933|gb|AAU40567.1| YkrB [Bacillus licheniformis ATCC 14580]
 gi|317391916|gb|EFV72713.1| peptide deformylase [Bacillus sp. BT1B_CT2]
          Length = 185

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V    P LR V+  ++   + + +  +  M+E + ++             G+GLAA QI
Sbjct: 8   IVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLAAPQI 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            +  R++ +  +            NPKI++ S         +            V R   
Sbjct: 68  NINKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVPRYER 127

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      ++  I   G  A   QHE+DHLNGI+F DH+ + 
Sbjct: 128 IRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 171


>gi|296111965|ref|YP_003622347.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154]
 gi|295833497|gb|ADG41378.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154]
          Length = 192

 Score = 94.1 bits (232), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +    DP+LR++++P+   ++ +   L  +M+            E      
Sbjct: 1   MTIRFTMDKITRDGDPVLRQIAQPVPFPLSEEHAQLAKDMMTYLVISQDATQNETYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQEGC 94
           G+GLAA Q+G   ++  +        +            NP II+         V +   
Sbjct: 61  GVGLAAPQVGYSLQMAAVLVPSLDPHESDDTPYFKGTIFNPTIISESVKRGALDVGEGCL 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               D    V R+  +TVRY D     +II      A   QHE+DHL+G L+ DH+ 
Sbjct: 121 SVDEDVPGFVPRANRVTVRYQDEIGDTKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177


>gi|289677568|ref|ZP_06498458.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 121

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%)

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           AA Q+ V  R+VV+DL +      PMV INP+I   +D+   YQEGCLS+P +  +V R 
Sbjct: 1   AATQVNVHKRVVVMDLSEDRSE--PMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRP 58

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + V+ +D + +   + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +
Sbjct: 59  QKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 118

Query: 168 L 168
           L
Sbjct: 119 L 119


>gi|52080056|ref|YP_078847.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52003267|gb|AAU23209.1| main formylmethionine deformylase [Bacillus licheniformis ATCC
           14580]
          Length = 184

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V    P LR V+  ++   + + +  +  M+E + ++             G+GLAA QI
Sbjct: 7   IVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLAAPQI 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            +  R++ +  +            NPKI++ S         +            V R   
Sbjct: 67  NINKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVPRYER 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      ++  I   G  A   QHE+DHLNGI+F DH+ + 
Sbjct: 127 IRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 170


>gi|16078520|ref|NP_389339.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309325|ref|ZP_03591172.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313652|ref|ZP_03595457.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318574|ref|ZP_03599868.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322848|ref|ZP_03604142.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6225248|sp|Q45495|DEF2_BACSU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|2633827|emb|CAB13329.1| formylmethionine deformylase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis]
 gi|291483999|dbj|BAI85074.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
          Length = 184

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52
           +V    P LR  + P+E          + +M+E                  G+GLAA QI
Sbjct: 7   IVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQI 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            +  R++ +  +D + +       NPKI++ S + S     +            V R A 
Sbjct: 67  NIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVPRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      ++  I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 127 IRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
 gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
          Length = 275

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 17/166 (10%)

Query: 3   KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              +V   DP+LR  ++P+   E  +  I  LI  M E M    G+GLAA Q+GV  +LV
Sbjct: 93  VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 152

Query: 60  VIDLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           VI+ +                       V INP +    ++ +V+ EGCLSIP Y+  V 
Sbjct: 153 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 212

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R+  + V  +D  A   +I A G  A  LQHE+DHLNG+L +D + 
Sbjct: 213 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 258


>gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
 gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
          Length = 218

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   E       +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++             A      V INP           + EGCLS   Y+A  KR   IT
Sbjct: 88  VEDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            R+ D +      +  G  A   QHE DHL+G L+ID 
Sbjct: 148 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDK 185


>gi|39930960|sp|Q7NJV3|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
          Length = 227

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 17/166 (10%)

Query: 3   KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              +V   DP+LR  ++P+   E  +  I  LI  M E M    G+GLAA Q+GV  +LV
Sbjct: 45  VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 104

Query: 60  VIDLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           VI+ +                       V INP +    ++ +V+ EGCLSIP Y+  V 
Sbjct: 105 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 164

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R+  + V  +D  A   +I A G  A  LQHE+DHLNG+L +D + 
Sbjct: 165 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 210


>gi|294651129|ref|ZP_06728464.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822961|gb|EFF81829.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 163

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+      IL   +  +   + NS+ ++ L   M   M   +G+G+AA Q+ +  
Sbjct: 3   MSVVLPVAQRGKEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISK 62

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS    + +EGCLS+PD R  V+R+  I 
Sbjct: 63  RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSQQTCLGEEGCLSVPDQRGVVERAQTIK 122

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           VRY     +      +G  A  +QHE+DHL+G+LF++ +S
Sbjct: 123 VRYYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162


>gi|73957448|ref|XP_853641.1| PREDICTED: similar to peptide deformylase-like protein [Canis
           familiaris]
          Length = 242

 Score = 94.1 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR V+ P+E        +  L+  +++VM     +GL+A Q+GV  +++  +  
Sbjct: 68  QVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFP 127

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      V +NP +         + EGC S+  + A V R   +
Sbjct: 128 EALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAV 187

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D   +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 188 QISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 229


>gi|225387512|ref|ZP_03757276.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme
           DSM 15981]
 gi|225046442|gb|EEG56688.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme
           DSM 15981]
          Length = 155

 Score = 94.1 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + +    D  LR+  + ++ ++  +  L+D+M++ ++ +     LAA Q+G+L RLV
Sbjct: 1   MAVRTIRTEGDEALRKRCKEVKNVDERVRALLDDMMDTLHATEGAAALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID      +    V +    +          EGCLS P   A   R   +TV+ +D N 
Sbjct: 61  VIDYCGCVLKLVNPVIVGRDGV------QECLEGCLSFPGRIATTIRPQSVTVQALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  ++  +G +A C  HEL+HL+G +F+D 
Sbjct: 115 KEVLLTGEGEMAKCYCHELEHLDGEVFLDR 144


>gi|299771142|ref|YP_003733168.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298701230|gb|ADI91795.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 160

 Score = 94.1 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 9/159 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   E  +  +  L   M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSANELNSDWLYQLAAAMQATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS++  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSNETLLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V+Y+    +       G  A  +QHE+DHLNG+LF++ +
Sbjct: 121 VKYLTLQGEAVETVFHGFPARIVQHEVDHLNGVLFVERI 159


>gi|254449483|ref|ZP_05062920.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198263889|gb|EDY88159.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 144

 Score = 94.1 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 77/138 (55%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81
           E  + D++ LID++ + MY   G GLAA QIGV  R+ V+D+      ++P  FINP+I 
Sbjct: 2   ELDDPDLVGLIDDLFDTMYHAKGRGLAAPQIGVTKRVFVVDVTWKEGTRDPRAFINPQIT 61

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
             + D  +  E CLSIPD    V R   I +R+   +   +    DG+LA C+QHELDHL
Sbjct: 62  ETAGDMLIMNEQCLSIPDIPMPVARPERIQLRWTRRDGGLETAVFDGILARCIQHELDHL 121

Query: 142 NGILFIDHLSRLKRDMIT 159
           NG +  DH +   R  + 
Sbjct: 122 NGTVIFDHQTPEMRTELE 139


>gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 242

 Score = 93.7 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   E       +  LID M   M    G+GLAA QIG+   L V
Sbjct: 52  LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAV 111

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++             A      V INP           + EGCLS   Y+A  KR   IT
Sbjct: 112 VEDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 171

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            R+ D +      +  G  A   QHE DHL+G L+ID 
Sbjct: 172 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDK 209


>gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae]
 gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae]
          Length = 196

 Score = 93.7 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  + +    + +I  ++D M++V+   D +G+AA QIG+  R++V++ +
Sbjct: 11  QIGDPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFR 70

Query: 65  DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +                    NP++   S   + + EGC+S+  Y A+V R   +
Sbjct: 71  EGKREQYKPEIYEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVGRFDKV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            VR +        +  +G  A   QHE DHLNG +++D + 
Sbjct: 131 RVRGVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRMD 171


>gi|238061428|ref|ZP_04606137.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149]
 gi|237883239|gb|EEP72067.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149]
          Length = 186

 Score = 93.7 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61
            +P+V  PDP+L R    ++  + ++  L  +++  M  +   +GLAA Q+GV  ++  +
Sbjct: 22  VRPVVSAPDPVLSRPGPEVDPTSDEVARLAADLIATMRVSPGCVGLAAPQVGVSAQVFAV 81

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DCN 118
           D+     A   +    +    +     +   +EGC+S+PD   DVKR++ + V  +   +
Sbjct: 82  DVTGHPKAVTVHGTFVLCNARVVEGSRWKSGREGCMSVPDLTGDVKRASRLVVEGLLPGS 141

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                +  DG  A  LQHE+DH  G+LF+D +
Sbjct: 142 GAPVRLVTDGFEARALQHEIDHCLGLLFLDRV 173


>gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis]
 gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis]
          Length = 203

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  +      + +I +++D M++V+   D +G+AA Q+GV  R++V++ +
Sbjct: 18  QIGDPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFR 77

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      VFINPKI   +D    + EGC+S+  +   V R   +
Sbjct: 78  EGKRAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYDRV 137

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  +        +   G  A   QHE+DHLNGI+++D + 
Sbjct: 138 RVTGIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRMD 178


>gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
           16992]
          Length = 218

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   E       +  LI+ M   M    G+GLAA QIG+   L V
Sbjct: 28  LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++             A      V INP       +   + EGCLS   Y+A  KR   IT
Sbjct: 88  VEDHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            R+ D + +    +  G  A   QHE DHL+G L+ID 
Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDK 185


>gi|226729275|sp|B6RGY0|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A;
           Short=PDF 1A; Flags: Precursor
 gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group]
          Length = 260

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M   P  V   DP+L   ++ +   +     +  +ID M+ VM    G+GLAA QIGV  
Sbjct: 68  MTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPL 127

Query: 57  RLVVIDLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +++V++         P                 INPK+ T S   +++ EGCLS+  YRA
Sbjct: 128 KIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRA 187

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V+R   + V  +D N +   + A G  A  LQHE DHL G L++D +  
Sbjct: 188 LVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVP 237


>gi|167462507|ref|ZP_02327596.1| Def2 [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383825|ref|ZP_08057572.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151641|gb|EFX44714.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 195

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   DPILR V++P+    + +    +  ML            E      G+GL+A Q
Sbjct: 14  DIVREGDPILREVTQPVHVPPSEEDRETLCCMLQFLKNSQDPELAEKYQLRGGVGLSANQ 73

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108
           IG+  R+    LQD   + +  + +NP+II+           +            V R  
Sbjct: 74  IGLNKRMFAAYLQDEQGKTHEYMVVNPQIISHSAAMTYLDQGEGCLSVDRPVPGFVPRYE 133

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+  D N +  ++   G ++   QHE+DHLNGI+F DH+ +
Sbjct: 134 RIKVKAYDINGEEVVLRLKGYVSIVFQHEMDHLNGIMFYDHIDK 177


>gi|116872445|ref|YP_849226.1| peptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466166|sp|A0AHG3|DEF_LISW6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116741323|emb|CAK20445.1| polypeptide deformylase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 183

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVASEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           + V  R++ I + D   R    V  NPKI + S   +     +       +    V RS 
Sbjct: 66  LAVTKRILAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +      A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGIPLKLRFKDYPAIVVQHEIDHLNGIMFYDHINKE 170


>gi|327441213|dbj|BAK17578.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris
           StLB046]
          Length = 185

 Score = 93.7 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52
           ++    P LR  +  +   ++++   L D+ML            E      GIGLAA Q+
Sbjct: 7   IIREGHPTLRTRAEEVTFPLSAEDRKLADDMLQYLINSQNPEIAEKYNLRGGIGLAANQV 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY---QEGCLSIPDYRADVKRSAF 109
             L R+  + L+D        V +NPKI++ S + +     +            V R A 
Sbjct: 67  NSLKRMFALHLEDENGELISFVAVNPKIVSHSVEQTYITSGEGCLSVDRAIPGYVYRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           ITV++M  + + + +   GL A   QHELDHLNG++F D + 
Sbjct: 127 ITVKFMTVDGEEKKMRLSGLPAIAFQHELDHLNGVMFYDRID 168


>gi|295397404|ref|ZP_06807493.1| peptide deformylase [Aerococcus viridans ATCC 11563]
 gi|294974368|gb|EFG50106.1| peptide deformylase [Aerococcus viridans ATCC 11563]
          Length = 205

 Score = 93.7 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR+ +  I   ++ +I  L D+M+E + ++             G+G+AA Q
Sbjct: 21  DIIREGHPTLRKKAEKITFPVSEEIRQLADDMMEFLRNSQDEELAEKYGLRGGVGIAAPQ 80

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL--------SIPDYRAD 103
           + V  ++  + + D    +N    +N   +         +  CL           D    
Sbjct: 81  LDVSIQMTALLVPDLMDPENAEPLLNGVFLNPRVVSHSVEGVCLREGEGCLSVDRDVPGY 140

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R A ITV Y D +         G  A  LQHE+DHLNGI+F DH+S
Sbjct: 141 VPRHARITVTYNDIDGNEYKKRFSGYPAIVLQHEIDHLNGIMFYDHIS 188


>gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1]
          Length = 353

 Score = 93.7 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 4   KPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             ++  P  +LR  + P  +    +   L  ++L VMY   G+GLAA Q+GV  +++V +
Sbjct: 185 LDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWN 244

Query: 63  LQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       VF+NP++++         EGCLS+P   A V+R     VRY       
Sbjct: 245 PTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQ 304

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + +   GL A  +QHE+DHL+GILF+D + R
Sbjct: 305 REVTLSGLEARVVQHEIDHLHGILFVDRVHR 335


>gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial-like [Callithrix
           jacchus]
          Length = 243

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L+  +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELT 128

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               +K P                F+NP +         + EGC S+  + A V R   +
Sbjct: 129 QALCQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  ++ N +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 189 EISGLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230


>gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
           27678]
 gi|171277909|gb|EDT45570.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
           27678]
          Length = 242

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   E       +  LID M   M    G+GLAA QIG+   L V
Sbjct: 52  LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAV 111

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++             A      V INP           + EGCLS   Y+A  KR   IT
Sbjct: 112 VEDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 171

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            R+ D +      +  G  A   QHE DHL+G L+ID 
Sbjct: 172 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDK 209


>gi|314933389|ref|ZP_07840754.1| peptide deformylase [Staphylococcus caprae C87]
 gi|313653539|gb|EFS17296.1| peptide deformylase [Staphylococcus caprae C87]
          Length = 162

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL++  + + + +  + +L+ ++ + +Y+ +   ++A QIGV  R+ +
Sbjct: 1   MTVKKLVKSTHPILKKEIKTVNQYDDQLKSLLQDLEDTLYAEEAAAISAPQIGVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  INP I + SD+     EG +++P+   +V RS  I V+  D N  
Sbjct: 61  I----DMELEGLLQLINPVIKSHSDEEITDLEGSITLPNIFGEVTRSKMIVVQCNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF +  +R+
Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTEKANRI 149


>gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 218

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   E       +  LI+ M   M    G+GLAA QIG+   L V
Sbjct: 28  LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++             A      V INP       +   + EGCLS   Y+A  KR   I 
Sbjct: 88  VEDHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDII 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            R+ D + +    +  G  A   QHE DHL+G L+ID 
Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDK 185


>gi|319892089|ref|YP_004148964.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161785|gb|ADV05328.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464802|gb|ADX76955.1| peptide deformylase 2 [Staphylococcus pseudintermedius ED99]
          Length = 183

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++    P LR+ ++ +E  +  +    + +M             E      G+GLA
Sbjct: 3   TMKDIIRDGHPTLRQRAKEVEFPLTEEERQTLLDMQTFLKNSQDPEIAEKYQLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI V  R+  + L D     +    I    I        Y    +       D    V
Sbjct: 63  APQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVDEDVPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   I ++  D +     +   G  A  +QHELDHLNG+LF DH+ 
Sbjct: 123 HRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHID 169


>gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 218

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 24  LPIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +R  D + +       G  A  +QHE DHL+G L++D 
Sbjct: 144 LRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181


>gi|256789557|ref|ZP_05527988.1| peptide deformylase [Streptomyces lividans TK24]
          Length = 222

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 28  LPIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVI 87

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 88  EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVR 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +R  D + +       G  A  +QHE DHL+G L++D 
Sbjct: 148 LRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 185


>gi|224282525|ref|ZP_03645847.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310286987|ref|YP_003938245.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
 gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 217

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P           INP      D    + EGCLS   Y+A  +R   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R+ D N +       G  A   QHE DHL+G L+ID 
Sbjct: 148 RWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDK 184


>gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)]
 gi|23396576|sp|Q9RD27|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
          Length = 218

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 24  LPIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +R  D + +       G  A  +QHE DHL+G L++D 
Sbjct: 144 LRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181


>gi|257420477|ref|ZP_05597467.1| polypeptide deformylase [Enterococcus faecalis X98]
 gi|257162301|gb|EEU92261.1| polypeptide deformylase [Enterococcus faecalis X98]
 gi|315154772|gb|EFT98788.1| peptide deformylase [Enterococcus faecalis TX0043]
          Length = 187

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENEKPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24]
          Length = 226

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 6   LVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +V    P+LR+ + P E     +++  LI  M EVM+   G+GLAA Q+G+  +L V++ 
Sbjct: 31  IVQAGHPVLRQQAAPYEGQLDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLED 90

Query: 64  QDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           Q                     INP         + + EGCLS+   +A V R   + + 
Sbjct: 91  QYDVDAETAAVRHRSPLEFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLD 150

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + D     +     G  A  +QHE DHL GIL++D 
Sbjct: 151 FTDPGGTRRQQDFFGWQARIVQHEADHLQGILYVDK 186


>gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 214

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + ++  ++    ++ +   M +  G+GLAA Q+GV  R+ VI
Sbjct: 24  LPIVAAGDPVLRRGTEPYDGQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                     V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPAPVPEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARPAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   D + +       G  A  +QHE DHL+G+L++D    
Sbjct: 144 LTGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDRAES 184


>gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba]
 gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba]
          Length = 238

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  + K    + ++  +++ M++V+   D +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
               ++ P      + ++                     + EGC+S+  Y A+V+R   +
Sbjct: 113 GRIRKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 173 KLTGLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|228474307|ref|ZP_04059042.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|314936719|ref|ZP_07844066.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
 gi|228271666|gb|EEK13013.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|313655338|gb|EFS19083.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
          Length = 183

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++ +  N + +M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKDVNLPLSEEDKNTLRDMREFLINSQDDEIAKKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  +++ + L D    K+    +    +        Y    +       +    V
Sbjct: 63  APQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R    T++  D +     +   G  A   QHE+DHLNGI+F D++ +
Sbjct: 123 HRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDK 170


>gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010]
          Length = 217

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP      D    + EGCLS   Y+A  +R   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R+ D N +       G  A   QHE DHL+G L+ID 
Sbjct: 148 RWADENGKQHEERLHGWPARIFQHETDHLSGELYIDK 184


>gi|296331515|ref|ZP_06873986.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674182|ref|YP_003865854.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151328|gb|EFG92206.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412426|gb|ADM37545.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 184

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52
           +V    P LR  + P+E          + +M+E                  G+GLAA QI
Sbjct: 7   IVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQI 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            +  R++ +  +D + +       NPKI++ S + S     +            V R A 
Sbjct: 67  NIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVPRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      ++  I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 127 IRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax]
          Length = 248

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++    + S++  +I  M++VM     +GL+A Q+GV  R++ ++  
Sbjct: 74  QVGDPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFP 133

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   +                  VFINP++        ++QE C SI  + A V R   +
Sbjct: 134 ESMLKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYLEV 193

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  ++  A+       G  A  LQHE+DHL+G+L+IDH+ 
Sbjct: 194 EVSGLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHMD 234


>gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta]
 gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta]
          Length = 196

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ +
Sbjct: 11  QIGDPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70

Query: 65  DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +                    NP++   S   + + EGC+S+  Y A V+R   +
Sbjct: 71  EGKQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +R +        +  +G  A   QHE+DHLNGI+++D + 
Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKMD 171


>gi|306520944|ref|ZP_07407291.1| peptide deformylase 2 [Clostridium difficile QCD-32g58]
          Length = 155

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 6/128 (4%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           +  I+ L+D+M E MY  DG+GLAA Q+G+L R+VVID+ +          I        
Sbjct: 34  DEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVVIDIGEELIELINPEIIETSGE--- 90

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
               + +EGCLS+     +V+R  ++ VR ++ N +   +  + LLA    HE+DHL+GI
Sbjct: 91  ---QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGETIELEGEELLARAFCHEIDHLDGI 147

Query: 145 LFIDHLSR 152
           LF+D + +
Sbjct: 148 LFVDKIEK 155


>gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829]
          Length = 183

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 8/170 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             K +V  P  IL+ V  P+++I  +I +L  +M EVMY+TDG GLAA QIG   RLVVI
Sbjct: 6   AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 65

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       RK P V +NPKI+   +      EGCLS P     VKR + +    ++ +  
Sbjct: 66  DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 125

Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A G  LA CLQHE DHL G+   DHL       + KKM KL + +
Sbjct: 126 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 169


>gi|307693348|ref|ZP_07635585.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 152

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + L    DPILR+  + + K++  I  L+D+ML+ ++   +G  LAA Q+GVL RLV
Sbjct: 1   MATRFLRYDSDPILRKKCKAVLKVDDKIRQLLDDMLDTLHETENGAALAANQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID  D   +      I+              EGCLS P+      R   +T++ ++   
Sbjct: 61  VIDFNDTRLKLVNPKMIS------QSGVQECVEGCLSFPNRFVKTIRPQKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  I+  +  +A C  HEL+HL+G++F+D 
Sbjct: 115 EEIIVDGEDEMAKCFCHELEHLDGMIFLDK 144


>gi|228992712|ref|ZP_04152638.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           pseudomycoides DSM 12442]
 gi|228998756|ref|ZP_04158342.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock3-17]
 gi|229006272|ref|ZP_04163956.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock1-4]
 gi|228754918|gb|EEM04279.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock1-4]
 gi|228760931|gb|EEM09891.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock3-17]
 gi|228767044|gb|EEM15681.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           pseudomycoides DSM 12442]
          Length = 184

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +    S+     +  +I+         M+E      GIG+AA Q
Sbjct: 6   DVIREGNPILRAVAEEVPLPASEEDIRTLKEMIELVINSQHPEMVEKYNLRPGIGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           IG+  R++ + + D           NPKII+ S + +     +       +    V R  
Sbjct: 66  IGISKRMIAVHVTDTNETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV+    + +   +   GL A   QHE+DHLNG++F DH++
Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168


>gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 245

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             PLV    P+LRR +   E ++ +D M  ID M   M    G+GLAA Q+GV   + V+
Sbjct: 49  VLPLVHAGHPVLRREAGRYEGQLGADFMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVM 108

Query: 62  DLQD--------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                               V +NP      D+   + EGCLS+P Y+A V R   + V 
Sbjct: 109 RDPGAADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWRRVRVM 168

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             D           G  A   QHE+DHL G+L++D 
Sbjct: 169 GWDETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDR 204


>gi|169404548|pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 188

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis]
          Length = 217

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 21/182 (11%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++     + +I  +I  M +VM  T  +G++A QIG   ++ +++  
Sbjct: 35  QVGDPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFS 94

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R                   FINP +   ++   V+ EGC SI  Y A+V R   +
Sbjct: 95  NSNIRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYYEV 154

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM----ITKKMSKLV 166
            +  ++ + +H    A G  A  +QHE+DHL G L+ID ++            K++ K  
Sbjct: 155 KISGLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMNSRSFQFNYWQYIKRLPKSR 214

Query: 167 QL 168
           +L
Sbjct: 215 KL 216


>gi|255629341|gb|ACU15015.1| unknown [Glycine max]
          Length = 223

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   + +L   +  +E I   +  +  +ID+M+ VM    G+GLAA QIG+  R++V+
Sbjct: 36  KIVKAGEAVLHSRAEEVEAIEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRIIVL 95

Query: 62  DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           + +                         +NPK+   +   +++ EGCLS+P Y A V+R 
Sbjct: 96  EDKIQYMAYYSNQELKAQDRTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVERY 155

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   I A G  A  LQHE DHL+G L++D +  
Sbjct: 156 LDVEVAGFDRYGEPIKINATGWQARILQHECDHLDGTLYVDKMVP 200


>gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285373|sp|Q057D2|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)]
 gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 149

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR +S+PI+ IN     +I +M + MY+ +GIGLAA QI +L +++V
Sbjct: 1   MSIRKILQFPDYRLRLLSKPIKIINKKTKKIIYDMFDTMYANNGIGLAAPQINILKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I         + +V INP I+  +  +    EGCLSIP   A +KRS+ I ++ ++   +
Sbjct: 61  ISSLK--PTMSELVLINPVILKKNKKYINTIEGCLSIPKKTAKIKRSSCIKIQAINTYGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A  LL+ C+QHE+DHL G LFID+++
Sbjct: 119 SFTLTAKSLLSICIQHEIDHLIGKLFIDYIN 149


>gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 213

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60
            +V    P LR  ++P       S++   ++ M   M++  G GLAA Q+GV  +L V  
Sbjct: 27  EIVQAGHPTLRAPAQPWNGQLGASELEQFVELMRRCMHAAPGFGLAAPQLGVSLQLAVLE 86

Query: 61  --------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   I              +NP+    +     + EGCLS+  ++A V R   I +
Sbjct: 87  DGHQVDSEIASIRERSNLPFFAMLNPRYQPLNSILVGFYEGCLSMSGWQAVVYRHHAIQL 146

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y   + +       G  A  +QHE DHL G+L++D   
Sbjct: 147 TYTTVDGELVQRELAGWPARIVQHETDHLAGMLYLDKAK 185


>gi|29377524|ref|NP_816678.1| peptide deformylase [Enterococcus faecalis V583]
 gi|227554489|ref|ZP_03984536.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|229547504|ref|ZP_04436229.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|255970735|ref|ZP_05421321.1| peptide deformylase [Enterococcus faecalis T1]
 gi|255974309|ref|ZP_05424895.1| peptide deformylase [Enterococcus faecalis T2]
 gi|256618174|ref|ZP_05475020.1| peptide deformylase [Enterococcus faecalis ATCC 4200]
 gi|256761103|ref|ZP_05501683.1| peptide deformylase [Enterococcus faecalis T3]
 gi|256854744|ref|ZP_05560108.1| polypeptide deformylase [Enterococcus faecalis T8]
 gi|256958348|ref|ZP_05562519.1| peptide deformylase [Enterococcus faecalis DS5]
 gi|256960417|ref|ZP_05564588.1| peptide deformylase [Enterococcus faecalis Merz96]
 gi|256962908|ref|ZP_05567079.1| peptide deformylase [Enterococcus faecalis HIP11704]
 gi|257078342|ref|ZP_05572703.1| peptide deformylase [Enterococcus faecalis JH1]
 gi|257080527|ref|ZP_05574888.1| peptide deformylase [Enterococcus faecalis E1Sol]
 gi|257083262|ref|ZP_05577623.1| peptide deformylase [Enterococcus faecalis Fly1]
 gi|257088182|ref|ZP_05582543.1| peptide deformylase [Enterococcus faecalis D6]
 gi|257417200|ref|ZP_05594194.1| peptide deformylase [Enterococcus faecalis AR01/DG]
 gi|257417917|ref|ZP_05594911.1| peptide deformylase [Enterococcus faecalis T11]
 gi|293383918|ref|ZP_06629820.1| peptide deformylase [Enterococcus faecalis R712]
 gi|293388312|ref|ZP_06632826.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294780198|ref|ZP_06745570.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|300861505|ref|ZP_07107589.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|307270427|ref|ZP_07551728.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|307273932|ref|ZP_07555144.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|307276707|ref|ZP_07557824.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|307278203|ref|ZP_07559285.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|307286413|ref|ZP_07566519.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|307292087|ref|ZP_07571954.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|312901914|ref|ZP_07761177.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|312906741|ref|ZP_07765741.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|312910721|ref|ZP_07769560.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|312953167|ref|ZP_07772014.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|39930870|sp|Q82ZJ0|DEF_ENTFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus faecalis V583]
 gi|227176399|gb|EEI57371.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|229307346|gb|EEN73333.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|255961753|gb|EET94229.1| peptide deformylase [Enterococcus faecalis T1]
 gi|255967181|gb|EET97803.1| peptide deformylase [Enterococcus faecalis T2]
 gi|256597701|gb|EEU16877.1| peptide deformylase [Enterococcus faecalis ATCC 4200]
 gi|256682354|gb|EEU22049.1| peptide deformylase [Enterococcus faecalis T3]
 gi|256710304|gb|EEU25348.1| polypeptide deformylase [Enterococcus faecalis T8]
 gi|256948844|gb|EEU65476.1| peptide deformylase [Enterococcus faecalis DS5]
 gi|256950913|gb|EEU67545.1| peptide deformylase [Enterococcus faecalis Merz96]
 gi|256953404|gb|EEU70036.1| peptide deformylase [Enterococcus faecalis HIP11704]
 gi|256986372|gb|EEU73674.1| peptide deformylase [Enterococcus faecalis JH1]
 gi|256988557|gb|EEU75859.1| peptide deformylase [Enterococcus faecalis E1Sol]
 gi|256991292|gb|EEU78594.1| peptide deformylase [Enterococcus faecalis Fly1]
 gi|256996212|gb|EEU83514.1| peptide deformylase [Enterococcus faecalis D6]
 gi|257159028|gb|EEU88988.1| peptide deformylase [Enterococcus faecalis ARO1/DG]
 gi|257159745|gb|EEU89705.1| peptide deformylase [Enterococcus faecalis T11]
 gi|291078745|gb|EFE16109.1| peptide deformylase [Enterococcus faecalis R712]
 gi|291082322|gb|EFE19285.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294452741|gb|EFG21171.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|295114395|emb|CBL33032.1| peptide deformylase [Enterococcus sp. 7L76]
 gi|300848966|gb|EFK76719.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|306496869|gb|EFM66419.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|306502426|gb|EFM71699.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|306505192|gb|EFM74380.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|306506606|gb|EFM75759.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|306509411|gb|EFM78469.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|306513205|gb|EFM81836.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|310627389|gb|EFQ10672.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|310628910|gb|EFQ12193.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|311288984|gb|EFQ67540.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|311290981|gb|EFQ69537.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|315027683|gb|EFT39615.1| peptide deformylase [Enterococcus faecalis TX2137]
 gi|315028233|gb|EFT40165.1| peptide deformylase [Enterococcus faecalis TX4000]
 gi|315031247|gb|EFT43179.1| peptide deformylase [Enterococcus faecalis TX0017]
 gi|315036534|gb|EFT48466.1| peptide deformylase [Enterococcus faecalis TX0027]
 gi|315143298|gb|EFT87314.1| peptide deformylase [Enterococcus faecalis TX2141]
 gi|315149069|gb|EFT93085.1| peptide deformylase [Enterococcus faecalis TX0012]
 gi|315152916|gb|EFT96932.1| peptide deformylase [Enterococcus faecalis TX0031]
 gi|315157489|gb|EFU01506.1| peptide deformylase [Enterococcus faecalis TX0312]
 gi|315164500|gb|EFU08517.1| peptide deformylase [Enterococcus faecalis TX1302]
 gi|315167177|gb|EFU11194.1| peptide deformylase [Enterococcus faecalis TX1341]
 gi|315171029|gb|EFU15046.1| peptide deformylase [Enterococcus faecalis TX1342]
 gi|315173457|gb|EFU17474.1| peptide deformylase [Enterococcus faecalis TX1346]
 gi|315573357|gb|EFU85548.1| peptide deformylase [Enterococcus faecalis TX0309B]
 gi|315581211|gb|EFU93402.1| peptide deformylase [Enterococcus faecalis TX0309A]
 gi|323479000|gb|ADX78439.1| peptide deformylase [Enterococcus faecalis 62]
 gi|327536189|gb|AEA95023.1| peptide deformylase [Enterococcus faecalis OG1RF]
          Length = 187

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens]
          Length = 243

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P                F+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D N +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230


>gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens]
 gi|17433054|sp|Q9HBH1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName:
           Full=Polypeptide deformylase; Flags: Precursor
 gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens]
 gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens]
 gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct]
 gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens]
 gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens]
          Length = 243

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P                F+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D N +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230


>gi|160876705|ref|YP_001556021.1| peptide deformylase [Shewanella baltica OS195]
 gi|160862227|gb|ABX50761.1| peptide deformylase [Shewanella baltica OS195]
 gi|315268905|gb|ADT95758.1| peptide deformylase [Shewanella baltica OS678]
          Length = 185

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
             P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++ 
Sbjct: 13  LLPIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +    A    P+V +NP+II  S +    +EGCLS+P  R ++ R   I VRY + 
Sbjct: 73  SRPNERYPDAPNMAPVVVVNPQIIHASSELVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             + Q     G +A   QHE DHL GI  ++ 
Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|304410515|ref|ZP_07392133.1| peptide deformylase [Shewanella baltica OS183]
 gi|307304608|ref|ZP_07584358.1| peptide deformylase [Shewanella baltica BA175]
 gi|304350999|gb|EFM15399.1| peptide deformylase [Shewanella baltica OS183]
 gi|306912010|gb|EFN42434.1| peptide deformylase [Shewanella baltica BA175]
          Length = 185

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
             P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++ 
Sbjct: 13  LLPIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +    A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY + 
Sbjct: 73  SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             + Q     G +A   QHE DHL GI  ++ 
Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|114046443|ref|YP_736993.1| peptide deformylase [Shewanella sp. MR-7]
 gi|113887885|gb|ABI41936.1| peptide deformylase [Shewanella sp. MR-7]
          Length = 181

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
            P+ +  + IL+  +  +   ++ +  L + M   M +  G+G+AA Q+     L ++  
Sbjct: 14  LPIAVVGEAILKEQAIVVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMAS 73

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              +    A   NP+V +NP+I++ S D    +EGCLS+P  R  + R   I VRY +  
Sbjct: 74  RPNERYPDAPLMNPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLA 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160
            Q Q     G +A   QHE DHL GI  ++      ++ M  +
Sbjct: 134 GQWQRSELTGFIARIFQHEFDHLQGITLLERSQMPEQKHMARE 176


>gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
          Length = 217

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184


>gi|330718596|ref|ZP_08313196.1| peptide deformylase [Leuconostoc fallax KCTC 3537]
          Length = 188

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   DP+LR  ++ +E  ++ +I  L  +M+            E      G+GLAA Q
Sbjct: 7   KIVRDGDPVLRAQAKKVEFPLSDEIQQLTQDMMDYLVISQDDEQNEKYGLRPGVGLAAPQ 66

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104
           +G   ++  I +       +   +            SV        +       D    V
Sbjct: 67  VGYSLQMASILVPPLDEDSDEPYWQGTIFNPVIISESVKRGALNVGEGCLSVDEDVPGFV 126

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R+  ITVRY D   Q Q I      A   QHE+DHL+G L+ DH++
Sbjct: 127 TRANRITVRYQDEQGQTQTIKLRDYPAIIFQHEIDHLHGHLYYDHIN 173


>gi|227517325|ref|ZP_03947374.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|227075195|gb|EEI13158.1| peptide deformylase [Enterococcus faecalis TX0104]
          Length = 187

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D + +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMDGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|90410436|ref|ZP_01218452.1| hypothetical polypeptide deformylase [Photobacterium profundum
           3TCK]
 gi|90328677|gb|EAS44961.1| hypothetical polypeptide deformylase [Photobacterium profundum
           3TCK]
          Length = 178

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
               ++   +P+LR  +  +   +IN  +  L+ ++ ++M S  G+G+AA Q+G   R  
Sbjct: 3   ASLEIIQLGNPLLRVPAEALSTTQINVTLP-LLASLEQIMLSHQGVGIAAPQVGESLRAF 61

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++  + +    +     P + INP+++  SD      EGCLSIP  RA + R   I V Y
Sbjct: 62  IVASRPNDRYPHAPLMEPTIMINPELLWHSDLMEKDWEGCLSIPGIRAKINRYTHIRVSY 121

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           ++             +A   QHELDHLNGI+F+D   +L
Sbjct: 122 LNVLGDVIETEFTDFIARIFQHELDHLNGIVFLDRADKL 160


>gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829]
 gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829]
          Length = 187

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 8/170 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             K +V  P  IL+ V  P+++I  +I +L  +M EVMY+TDG GLAA QIG   RLVVI
Sbjct: 10  AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 69

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       RK P V +NPKI+   +      EGCLS P     VKR + +    ++ +  
Sbjct: 70  DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 129

Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A G  LA CLQHE DHL G+   DHL       + KKM KL + +
Sbjct: 130 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 173


>gi|169404547|pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 188

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +     +GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
           nagariensis]
 gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
           nagariensis]
          Length = 257

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 24/169 (14%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V    P+LR+V+R +      +  + NL+  M  VM +  G+GLAA QIG  +R++V++
Sbjct: 51  IVQAGTPVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLE 110

Query: 63  LQDHAHRKN---------------------PMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
            ++    +                       ++     +     + + + EGCLS+  Y 
Sbjct: 111 DREEYIVRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYV 170

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           A V R   + +  +D      ++ A G +A  LQHE DHL GIL++D +
Sbjct: 171 AVVPRYRIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRM 219


>gi|24372647|ref|NP_716689.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363157|sp|Q8EHZ2|DEF2_SHEON RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|24346687|gb|AAN54134.1|AE015550_9 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 181

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
            P+ +  + IL++ +  +   +  +  L   M   M    G+G+AA Q+     L ++  
Sbjct: 14  LPIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFIMAS 73

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              +    A    P+V +NP+I+  S      +EGCLS+P  R  + R   I VRY +  
Sbjct: 74  RPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRYQNLA 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160
            Q Q     G +A   QHE DHL GI  ++      ++ M  +
Sbjct: 134 GQWQHSELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMAQE 176


>gi|329571126|gb|EGG52832.1| peptide deformylase [Enterococcus faecalis TX1467]
          Length = 187

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHVKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|153001985|ref|YP_001367666.1| peptide deformylase [Shewanella baltica OS185]
 gi|151366603|gb|ABS09603.1| peptide deformylase [Shewanella baltica OS185]
          Length = 185

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
             P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++ 
Sbjct: 13  LLPIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHCPLALFIMA 72

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +    A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY + 
Sbjct: 73  SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             + Q     G +A   QHE DHL GI  ++ 
Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|213692889|ref|YP_002323475.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 217

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184


>gi|126173131|ref|YP_001049280.1| peptide deformylase [Shewanella baltica OS155]
 gi|125996336|gb|ABN60411.1| peptide deformylase [Shewanella baltica OS155]
          Length = 185

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
             P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++ 
Sbjct: 13  LLPIALVGEAILGQTAITVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +    A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY + 
Sbjct: 73  SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             + Q     G +A   QHE DHL GI  ++ 
Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|254498920|ref|ZP_05111625.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254351905|gb|EET10735.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 178

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V+  +P LR VS+PI+       D+  L + +  +M   +G+GLAA QIG+  R +V 
Sbjct: 7   DVVLLGNPTLRMVSKPIDDEEFGTLDLNQLSERLFHMMKIKNGLGLAAPQIGINKRAIVF 66

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            + +H  +K+          NP   + SD      EGCLS+ D R  V R   I  R  D
Sbjct: 67  GMDNHPVKKHLPPIPYTILFNPIFESTSDFIEEEYEGCLSVGDLRGKVPRHKNIIYRGYD 126

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +       A  L A  +QHE DHLNGI+F+D ++
Sbjct: 127 VDGNLIEREASDLHARVVQHETDHLNGIIFLDKVT 161


>gi|229548080|ref|ZP_04436805.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|257091309|ref|ZP_05585670.1| peptide deformylase [Enterococcus faecalis CH188]
 gi|312905368|ref|ZP_07764483.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|229306766|gb|EEN72762.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|257000121|gb|EEU86641.1| peptide deformylase [Enterococcus faecalis CH188]
 gi|310631392|gb|EFQ14675.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|315162546|gb|EFU06563.1| peptide deformylase [Enterococcus faecalis TX0645]
 gi|315578554|gb|EFU90745.1| peptide deformylase [Enterococcus faecalis TX0630]
          Length = 187

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITKEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931072|sp|Q825U9|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 224

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 33  LPIVAAGDPVLRRGAEPYDGQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVI 92

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP       D + + EGCLS+P ++A V R A + 
Sbjct: 93  EDPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARVR 152

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  +D + +       G  A  +QHE DHL+G+L++D 
Sbjct: 153 LTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDR 190


>gi|328955668|ref|YP_004373001.1| peptide deformylase [Coriobacterium glomerans PW2]
 gi|328455992|gb|AEB07186.1| peptide deformylase [Coriobacterium glomerans PW2]
          Length = 185

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PD  LRR   PIE+I  +I  L  +M + M+   G GLAA Q+G   +++V
Sbjct: 1   MEINGIVLSPDERLRRECAPIEEITPEIERLASHMKQEMFENAGCGLAAPQVGQTVQMIV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID         +P V INP II  SD  + + EGCLSIP    ++ R   + V   D +A
Sbjct: 61  IDTSYTSREDYDPYVLINPVIIEQSDRLTAFSEGCLSIPGISCEIYRPDHVVVEAYDLDA 120

Query: 120 QHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                 A G  +  CLQHE+DHL GI   + L      +  +   
Sbjct: 121 NLIRYEAAGDLMCVCLQHEIDHLKGITMFERLDPAAHVIALRAYQ 165


>gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05]
          Length = 217

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   +     + +  LI  M   M    G+GLAA QIG+   + V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87

Query: 61  IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           I+        +P           INP           + EGCLS+  Y+A  +R   +  
Sbjct: 88  IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDVQA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +       G  A   QHE DHL G L+ID 
Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDR 184


>gi|253731832|ref|ZP_04865997.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724431|gb|EES93160.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|329728826|gb|EGG65247.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193]
          Length = 162

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|229547451|ref|ZP_04436176.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|307276655|ref|ZP_07557773.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|229307483|gb|EEN73470.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|306506765|gb|EFM75917.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|315028353|gb|EFT40285.1| peptide deformylase [Enterococcus faecalis TX4000]
 gi|315144145|gb|EFT88161.1| peptide deformylase [Enterococcus faecalis TX2141]
 gi|315159377|gb|EFU03394.1| peptide deformylase [Enterococcus faecalis TX0312]
          Length = 150

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
            ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ + +        +
Sbjct: 2   KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESG----HFEL 57

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
              +I      S+  EGCLSIP+    V+R+  +TVRY D   +   + A G LA   QH
Sbjct: 58  INPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117

Query: 137 ELDHLNGILFIDHL 150
           E+DHLNG LFID +
Sbjct: 118 EIDHLNGELFIDKM 131


>gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster]
          Length = 206

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ +
Sbjct: 21  QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 80

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
           +    +        + ++                     + EGC+S+  Y A+V+R   +
Sbjct: 81  EGKQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKV 140

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 141 RIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 181


>gi|262279936|ref|ZP_06057721.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202]
 gi|262260287|gb|EEY79020.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202]
          Length = 160

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + IL+ ++ P+   E  +  +  L   M   M   +G+G+AA Q+ +  
Sbjct: 1   MSVVLPVAKRGEDILKLIAAPVSSSELNSDWLYGLAAAMHATMLERNGVGIAAPQVYISK 60

Query: 57  RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++          A   + +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + 
Sbjct: 61  RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSSETLLGEEGCLSVPDERGQVERAEMVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V+Y     +       G  A  +QHE+DHLNG+LF++ +
Sbjct: 121 VKYSTLQGEFVETIFHGFPARIVQHEVDHLNGVLFVERI 159


>gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans]
 gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans]
          Length = 196

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ +
Sbjct: 11  QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70

Query: 65  DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +                    NP++   S   + + EGC+S+  Y A V+R   +
Sbjct: 71  EGKQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +R +        +  +G  A   QHE+DHLNG +++D +  
Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDP 172


>gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1]
 gi|23396556|sp|Q9RRQ4|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1]
          Length = 232

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 24/189 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DPILRR +R +   +           +  + D MLE M+   G+GLAA QIG
Sbjct: 21  VYPMRLYGDPILRRKARNLTAADTLHVPGFEPQTVREVADTMLETMFEERGVGLAAPQIG 80

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQEGCLSIP 98
           +  R+ V         +N       +                I    D S  +       
Sbjct: 81  LPVRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKSYQEGCLSIPG 140

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Y   V R+  + V Y D + Q + I A+  LA   QHE DHL+G LF+DHL     +  
Sbjct: 141 IYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHLPADITEDH 200

Query: 159 TKKMSKLVQ 167
            K + ++ Q
Sbjct: 201 RKDLLRIQQ 209


>gi|227517269|ref|ZP_03947318.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|229548020|ref|ZP_04436745.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|307270561|ref|ZP_07551859.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|307284851|ref|ZP_07565007.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|312902126|ref|ZP_07761386.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|312905430|ref|ZP_07764544.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|312906688|ref|ZP_07765688.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|227075276|gb|EEI13239.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|229306896|gb|EEN72892.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|306503110|gb|EFM72367.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|306513142|gb|EFM81776.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|310627336|gb|EFQ10619.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|310631159|gb|EFQ14442.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|311290790|gb|EFQ69346.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|315026429|gb|EFT38361.1| peptide deformylase [Enterococcus faecalis TX2137]
 gi|315146582|gb|EFT90598.1| peptide deformylase [Enterococcus faecalis TX4244]
 gi|315161200|gb|EFU05217.1| peptide deformylase [Enterococcus faecalis TX0645]
 gi|315171198|gb|EFU15215.1| peptide deformylase [Enterococcus faecalis TX1342]
 gi|315577116|gb|EFU89307.1| peptide deformylase [Enterococcus faecalis TX0630]
 gi|315581154|gb|EFU93345.1| peptide deformylase [Enterococcus faecalis TX0309A]
          Length = 150

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
            ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ + + R      I
Sbjct: 2   KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELI 58

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP II         +  CLSIP+    V+R+  +TVRY D   +   + A G LA   QH
Sbjct: 59  NPVIIEKKGTSIDVEG-CLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117

Query: 137 ELDHLNGILFIDHL 150
           E+DHLNG LFID +
Sbjct: 118 EIDHLNGELFIDKM 131


>gi|205373016|ref|ZP_03225822.1| peptide deformylase [Bacillus coahuilensis m4-4]
          Length = 184

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            ++    P LR V++ ++   + +    + ++LE                  GIG+AA Q
Sbjct: 6   DIIREGHPTLREVAKEVKIPPSLEDQETLKSLLEYVKNSQDPEKAATFNLRPGIGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           I V  R++ I + +           NP +I+ S + +     +       D    V R  
Sbjct: 66  IDVSKRMLAIRVPNEKGELIEEALFNPIVISHSVEQAYLTSGEGCLSVDRDVPGFVPRYR 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +TV+  D N Q + +   GL A   QHE+DHLNGI+F DH++
Sbjct: 126 KVTVKGFDINGQLKTLKLRGLPAIVFQHEIDHLNGIMFYDHIN 168


>gi|251771507|gb|EES52084.1| Polypeptide deformylase [Leptospirillum ferrodiazotrophum]
          Length = 175

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV   D +LR  S P++    ++  ++ ++ + + +  G+ +AA QIGV  RL V
Sbjct: 1   MSVRPLVSHRDTVLRIASEPVDPCAPEVRQVVQDLFDTLATQKGVAMAAPQIGVAMRLFV 60

Query: 61  IDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            DL+    +  P     +    I          EGCLS P     ++R   + V     +
Sbjct: 61  FDLKRPREKGGPPTRGLLINPTIERRFGSIPVIEGCLSFPGLDLSIRRPEGVVVSGYGLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +  ++   GL A  ++HE DHL G L  D  + L
Sbjct: 121 GKKVVLEGGGLFARMVEHETDHLEGRLLPDRQNGL 155


>gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 185

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 18/173 (10%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V    P LR ++  +       +    LI  ML +      +GLAA QIGV YR+ V+
Sbjct: 1   EIVQAGTPCLREIAEEVPLSSIDTAKTQELIQEMLSICRGRG-VGLAAPQIGVPYRIFVL 59

Query: 62  DLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +  +                      V INP +   S+  + + EGCLS+  YR  V+R 
Sbjct: 60  EDTEEGMSDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRY 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             + V     +       A G  A  +QHE+DHLNG+L++D +       + K
Sbjct: 120 LEVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRMDTRTFRRVDK 172


>gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
 gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
          Length = 217

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   +     + +  LI  M   M    G+GLAA QIG+   + V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87

Query: 61  IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           I+        +P           INP           + EGCLS+  Y+A  +R   I  
Sbjct: 88  IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDIQA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +       G  A   QHE DHL G L+ID 
Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDR 184


>gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 217

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQQTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INPK     +  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDEDGKHHSEQLHGWPARIFQHETDHLSGELYIDK 184


>gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis]
 gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis]
          Length = 234

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +   P+E ++  +I  ++D M+ V+   D +G+AA QIGV  R++ ++ +
Sbjct: 49  QIGDPVLRDRAAEVPVECVDSKEIRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFR 108

Query: 65  DHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               ++ P      + ++               +     + EGC+S+  + A+V+R   +
Sbjct: 109 RGIKKELPEAMYRARQMSELPLTVFINPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAV 168

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D   +   +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 169 KLSGLDREGEPLSLELSGWNARIAQHEMDHLDGKLYTDHMDR 210


>gi|315148893|gb|EFT92909.1| peptide deformylase [Enterococcus faecalis TX4244]
          Length = 187

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML            E +    G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101
           A Q+ +  R++ + +  +                     SV        +       D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDWDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial [Macaca mulatta]
          Length = 243

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVLALELP 128

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P                F+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D N +     A G  A  +QHE+DHL G LFID +  
Sbjct: 189 QISGLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKMDS 230


>gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster]
 gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster]
          Length = 196

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ +
Sbjct: 11  QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
           +    +        + ++                     + EGC+S+  Y A+V+R   +
Sbjct: 71  EGKQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 131 RIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 171


>gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
 gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
          Length = 201

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +    + +LR  +  ++    +++D+  LID M++ M S   +G+AA Q+G   R++ ++
Sbjct: 32  IRQAGESVLREKAAAVDPTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLE 91

Query: 63  LQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +                        V INP++    +      E C SI +  A V R  
Sbjct: 92  ITKRHLSYLQAQYRNVVQRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCMAKVPRYT 151

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V  +D +       ADG L+  LQHE+DHL+G+L++D +
Sbjct: 152 TVEVSALDRHGNRINYIADGWLSRILQHEVDHLDGLLYVDKM 193


>gi|253733547|ref|ZP_04867712.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258423742|ref|ZP_05686628.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|253728601|gb|EES97330.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257845974|gb|EEV70002.1| polypeptide deformylase [Staphylococcus aureus A9635]
          Length = 162

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVVKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDMEMEGLLQ----LVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|15924205|ref|NP_371739.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926798|ref|NP_374331.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315]
 gi|57651784|ref|YP_186090.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|87161304|ref|YP_493805.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194921|ref|YP_499721.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267706|ref|YP_001246649.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393764|ref|YP_001316439.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221337|ref|YP_001332159.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979536|ref|YP_001441795.1| hypothetical protein SAHV_1205 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509387|ref|YP_001575046.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142005|ref|ZP_03566498.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253315573|ref|ZP_04838786.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006002|ref|ZP_05144603.2| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795729|ref|ZP_05644708.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|258415953|ref|ZP_05682223.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|258419700|ref|ZP_05682667.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|258444552|ref|ZP_05692881.1| formylmethionine deformylase [Staphylococcus aureus A8115]
 gi|258447615|ref|ZP_05695759.1| polypeptide deformylase [Staphylococcus aureus A6300]
 gi|258449457|ref|ZP_05697560.1| polypeptide deformylase 1 [Staphylococcus aureus A6224]
 gi|258452512|ref|ZP_05700518.1| polypeptide deformylase 1 [Staphylococcus aureus A5948]
 gi|258454836|ref|ZP_05702800.1| polypeptide deformylase 1 [Staphylococcus aureus A5937]
 gi|262048116|ref|ZP_06021003.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30]
 gi|262051848|ref|ZP_06024064.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3]
 gi|269202830|ref|YP_003282099.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282892701|ref|ZP_06300936.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|282919997|ref|ZP_06327726.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282927555|ref|ZP_06335171.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|284024139|ref|ZP_06378537.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132]
 gi|294848208|ref|ZP_06788955.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295407153|ref|ZP_06816954.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|296275236|ref|ZP_06857743.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245961|ref|ZP_06929820.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|304381222|ref|ZP_07363875.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|54036958|sp|P63922|DEFL_STAAN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|54040934|sp|P63921|DEFL_STAAM RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81694664|sp|Q5HGL7|DEFL_STAAC RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|13701015|dbj|BAB42310.1| SA1058 [Staphylococcus aureus subsp. aureus N315]
 gi|14246985|dbj|BAB57377.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57285970|gb|AAW38064.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|87127278|gb|ABD21792.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202479|gb|ABD30289.1| polypeptide deformylase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|147740775|gb|ABQ49073.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946216|gb|ABR52152.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374137|dbj|BAF67397.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721671|dbj|BAF78088.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368196|gb|ABX29167.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257789701|gb|EEV28041.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|257839289|gb|EEV63763.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|257844285|gb|EEV68667.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|257850045|gb|EEV73998.1| formylmethionine deformylase [Staphylococcus aureus A8115]
 gi|257853806|gb|EEV76765.1| polypeptide deformylase [Staphylococcus aureus A6300]
 gi|257857445|gb|EEV80343.1| polypeptide deformylase 1 [Staphylococcus aureus A6224]
 gi|257859730|gb|EEV82572.1| polypeptide deformylase 1 [Staphylococcus aureus A5948]
 gi|257863219|gb|EEV85983.1| polypeptide deformylase 1 [Staphylococcus aureus A5937]
 gi|259160249|gb|EEW45277.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3]
 gi|259163682|gb|EEW48237.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30]
 gi|262075120|gb|ACY11093.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940707|emb|CBI49088.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282590558|gb|EFB95635.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|282594713|gb|EFB99697.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282764698|gb|EFC04823.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|285816897|gb|ADC37384.1| Peptide deformylase [Staphylococcus aureus 04-02981]
 gi|294825008|gb|EFG41430.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|294968006|gb|EFG44034.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|297177125|gb|EFH36379.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|302751038|gb|ADL65215.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340205|gb|EFM06146.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829609|emb|CBX34451.1| polypeptide deformylase family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131006|gb|EFT86990.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315198452|gb|EFU28781.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140970|gb|EFW32817.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144315|gb|EFW36081.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313884|gb|AEB88297.1| Peptide deformylase-like protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724773|gb|EGG61278.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189]
 gi|329727640|gb|EGG64096.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 162

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++  +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDMEMEGLLQ----LVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
          Length = 183

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 9   QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 68

Query: 65  DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P                F+NP +         + EGC S+  + A V R   +
Sbjct: 69  EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D N +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 129 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 170


>gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
           CCE9901]
 gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
           CCE9901]
          Length = 274

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%)

Query: 4   KPLVIFPDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +V    P LR V+R   +++I+S +I  LI  ML V     G+GLAA Q+G   R+VV
Sbjct: 53  RDVVQAGAPALRDVARAVDVDEIDSTEIQELIAEMLRVCR-ARGVGLAAPQLGARRRVVV 111

Query: 61  IDL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ++                         V +NP +    D  + + EGCLS+  YRA V+R
Sbjct: 112 LEDTTEGMSDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRR 171

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  R    + +     A G  A  LQHE+DHL+G+L+ D +       +
Sbjct: 172 HLRVRCRGYGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRMESRTLRRV 223


>gi|330952315|gb|EGH52575.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 119

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 2/119 (1%)

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            Q+ V  R+VV+DL +      P VFINP+I   +D+   YQEGCLS+P +  +V R   
Sbjct: 1   TQVNVHKRVVVMDLSEDRSE--PRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQK 58

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + V+ +D + +   + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 59  VRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 117


>gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi]
 gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi]
          Length = 203

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  +      + +I ++++ M++V+   D +G+AA Q+GV  R++V++ +
Sbjct: 18  QIGDPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFR 77

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      +FINP+I   SD    + EGC+S+  Y A V R   +
Sbjct: 78  EGKREQFTPEVYEERKMSHLPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVSRYDRV 137

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  +        +   G  A   QHE+DHLNGI++ID + 
Sbjct: 138 RVTGIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRMD 178


>gi|168184095|ref|ZP_02618759.1| putative peptide deformylase [Clostridium botulinum Bf]
 gi|237794165|ref|YP_002861717.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|182672791|gb|EDT84752.1| putative peptide deformylase [Clostridium botulinum Bf]
 gi|229261785|gb|ACQ52818.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 166

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----YYFINPILEFIGDDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGGLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|303243293|ref|ZP_07329698.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302589164|gb|EFL59007.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 186

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 1   MVKKPLVI-----FP--DPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTDG-IGL 47
           M    ++      F   D  LR  SR I+K   ++        I ++ E +Y +   +GL
Sbjct: 1   MAILSVLKINKSIFGLRDISLRNPSRQIQK--EELREQWFIDFIKDLFETLYYSPTGVGL 58

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           AA Q+GV  RLV ID+      KNP   INP     +D   +  E CLS+P +   V+R 
Sbjct: 59  AAPQVGVHIRLVAIDM--DRDGKNPFPLINPTYEAVNDSIVLSNESCLSVPGFVGKVQRH 116

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I + Y D N +   +Y +G  A  +QHE+DHLNG+L+ID + 
Sbjct: 117 EKIKLTYWDVNGEEIELYVEGFKAKVIQHEIDHLNGVLYIDRID 160


>gi|217974557|ref|YP_002359308.1| peptide deformylase [Shewanella baltica OS223]
 gi|217499692|gb|ACK47885.1| peptide deformylase [Shewanella baltica OS223]
          Length = 185

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
             P+ +  + IL R +  +   ++++ +L + M   M +  G+G+AA Q+     L ++ 
Sbjct: 13  LLPIALVGEAILGRTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +    A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY + 
Sbjct: 73  SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             + Q     G +A   QHE DHL GI  ++ 
Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 198

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++      +++  ++  +++VM   D +GL+A QIGV  R++ ++  
Sbjct: 24  QVGDPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALEYP 83

Query: 65  DHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                  +   +F+NP++       +++QE C SI  + A V R   +
Sbjct: 84  EKMLEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRYLSV 143

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V  ++ N +     A G  A  LQHE+DHL+G+L+ID +  
Sbjct: 144 EVSGLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRMDS 185


>gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 226

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P LR+ +   +   S +    LI  M EVM+   G+GLAA Q+G+  ++ V++
Sbjct: 30  PIVQAGHPALRQRAAAYDGQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIPLQIAVVE 89

Query: 63  LQDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            Q     +            +  +NP+      D + + EGCLS+   +A V R   + +
Sbjct: 90  DQYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGLQAVVARPEKVLL 149

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +   +        +G  A  +QHE DHLNG+L++D 
Sbjct: 150 EFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVDR 186


>gi|81428697|ref|YP_395697.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K]
 gi|123728642|sp|Q38WP3|DEF_LACSS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78610339|emb|CAI55388.1| Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA
           deformylase) [Lactobacillus sakei subsp. sakei 23K]
          Length = 185

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K ++   +P LR +++P+   ++ +   L  +M+                   G+GLAA
Sbjct: 4   MKDIIREGNPTLREIAQPVSFPLSDEDRQLAADMMTFLENSQDPEIAAKYQLRAGVGLAA 63

Query: 50  VQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADV 104
            Q+ V  ++  V++   +        V INPKII+ S   +     +       +    V
Sbjct: 64  PQVDVSKQMSAVLVPGPEGEAPILKDVIINPKIISHSVQDAALAEGEGCLSVDREVPGYV 123

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            R   IT+RY D       I      A   QHE+DHLNGILF DH+++ 
Sbjct: 124 PRHDRITLRYQDVEGVSHKIRLKNYPAIVCQHEIDHLNGILFFDHINKE 172


>gi|323486114|ref|ZP_08091445.1| polypeptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323400681|gb|EGA93048.1| polypeptide deformylase [Clostridium symbiosum WAL-14163]
          Length = 150

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + +    D ILR+  + +++++  I  ++D+ML+ +    +G  LAA Q+G+L RLV
Sbjct: 1   MAIRQMRYNDDEILRKKCKEVKEVDDKIRVMLDDMLDTLRHTENGAALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI+      +      I               EGCLS P    +  R   +TV+ +D   
Sbjct: 61  VIEYCGELLKLVNPKIIGR------SGTQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Q  I+  +G +A C  HEL+HL+G +F+D 
Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144


>gi|311067971|ref|YP_003972894.1| peptide deformylase [Bacillus atrophaeus 1942]
 gi|310868488|gb|ADP31963.1| peptide deformylase [Bacillus atrophaeus 1942]
          Length = 184

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V    P LR V+  ++   +      +  M+E + ++             G+GLAA QI
Sbjct: 7   IVRDGHPALREVAENVQLPASDTEKKQLAEMIEFVKNSQDPVLAEQHQLRPGVGLAAPQI 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            +  R++ I  +D +         NPKII+ S + S     +            V R A 
Sbjct: 67  NINKRMIAIHAEDASGTLYSYALFNPKIISHSVEKSYLTSGEGCLSVDEAIPGYVPRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      +   I   G LA   QHE+DHLNG++F DH+ + 
Sbjct: 127 IRVKATTLEGEEIDIRLKGFLAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 191

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 7   VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           V   DP+L + +  +++ N   S I   I++M++VM +  G+GLAA QIGV  +++V++ 
Sbjct: 1   VQAGDPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLED 60

Query: 64  QDHAHRKNPMVFINPKII---------------TFSDDFSVYQEGCLSIPDYRADVKRSA 108
                          +                       + + EGCLS+  YRA V+R +
Sbjct: 61  TKELMSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHS 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V  +  + +   + A G  A  LQHE DHL G L++D + +
Sbjct: 121 EVEVTGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKMVK 164


>gi|126649799|ref|ZP_01722035.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593518|gb|EAZ87463.1| peptide deformylase [Bacillus sp. B14905]
          Length = 185

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR  +  ++  ++ +   L ++ML            E      GIGLAA Q
Sbjct: 6   DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           +  L R+  + LQD A  +   V INPKI++ S + +     +       +    V R A
Sbjct: 66  VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV++   + + + +   GL A   QHELDHLNGI+F D ++
Sbjct: 126 RITVKFKTIDGEEKKMRLKGLSAIAFQHELDHLNGIMFYDRIN 168


>gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 217

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  LLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184


>gi|317129375|ref|YP_004095657.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522]
 gi|315474323|gb|ADU30926.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522]
          Length = 193

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++    P LR+ +  +    N +   ++ NM+            E      G+G+A
Sbjct: 3   TMKDVIREGHPTLRKRAEEVNLPANEEDTAILQNMIDFLIHSQDPEIAEKYDLRPGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105
           A QI V  R++ + + DH      +   NPKII+    +      +       +    V 
Sbjct: 63  APQINVSKRMIAVRVDDHNENLIEVGLFNPKIISHSIETTHLENGEGCLSVDREVPGIVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A I V     + +   +   GL A   QHE+DHLNGI+F D + 
Sbjct: 123 RYARIKVEGTSIDGEKITLKLKGLPAIVFQHEIDHLNGIMFYDRIE 168


>gi|169826942|ref|YP_001697100.1| peptide deformylase 2 [Lysinibacillus sphaericus C3-41]
 gi|168991430|gb|ACA38970.1| Peptide deformylase 2 [Lysinibacillus sphaericus C3-41]
          Length = 185

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR  +  ++  ++ +   L ++ML            E      GIGLAA Q
Sbjct: 6   DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           +  L R+  + LQD A  +   V INPKI++ S + +     +       +    V R A
Sbjct: 66  VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV++   + + + +   GL A   QHELDHLNG++F D ++
Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGVMFYDRIN 168


>gi|308173421|ref|YP_003920126.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7]
 gi|307606285|emb|CBI42656.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7]
 gi|328553649|gb|AEB24141.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
 gi|328911506|gb|AEB63102.1| formylmethionine deformylase A [Bacillus amyloliquefaciens LL3]
          Length = 184

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V    P LR ++  ++   + +    + +M+E + ++             G+GLAA Q 
Sbjct: 7   IVRDGHPALREIAEEVQLPASDEEKQQLADMIEFVKNSQNPELAEKYELRPGVGLAAPQT 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            V  R++ +  +D           NPKI++ S + S     +            V R A 
Sbjct: 67  AVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVPRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+      +   I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 127 IRVKATTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|282916464|ref|ZP_06324226.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|283770276|ref|ZP_06343168.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|282319904|gb|EFB50252.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|283460423|gb|EFC07513.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
          Length = 162

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVARSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
 gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705]
 gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A]
 gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
 gi|39931158|sp|Q8G534|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           longum F8]
 gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 217

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  LLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184


>gi|311029756|ref|ZP_07707846.1| peptide deformylase [Bacillus sp. m3-13]
          Length = 184

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYST--------DGIGLA 48
             K ++    P LR V+  +      + +  +  +++ +                G+GLA
Sbjct: 3   TAKDIIKEGHPTLRVVASDVSLPPSQEDSITLQKMMEYLQNSQNPDISQQYNLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI V  +++ + ++D +   +     NP+I++ S + S     +       D    V 
Sbjct: 63  APQINVPKKMIAVHIRDESGTLHSYALFNPRIVSHSVEKSFLTSGEGCLSVDRDVPGLVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A +TV+      +   +   GL+A   QHE+DHLNG++F DH++
Sbjct: 123 RYARVTVKATTLQGEEIKLRLKGLVAIVFQHEIDHLNGVMFYDHIN 168


>gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii]
          Length = 270

 Score = 91.0 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++  +   + I  LI+ M+ VM     +GL+A QIGV  +++V++ +
Sbjct: 95  QVGDPVLRGKAVPVDPSDIGSNSINQLIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYK 154

Query: 65  DHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               +                  +FINP++    D      EGC SI  Y A V+R   +
Sbjct: 155 KKHMQMYSPAIIQQRGIKEFPLKIFINPQMKVLDDTKVTQLEGCESIKGYSAYVERYHAV 214

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +    + Q   ADG  A  +QHE+DHL G L+ID +  
Sbjct: 215 EITGLSPTGEMQSWKADGFPARIIQHEMDHLQGRLYIDIMDP 256


>gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 217

 Score = 91.0 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  LLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184


>gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni]
 gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni]
          Length = 173

 Score = 91.0 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 17/158 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LRR +  +      + +I   ID M+ V+   D +G+AA QIGV  R++V++  
Sbjct: 11  QIGDPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVMEFH 70

Query: 65  DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    + P                  NP++   +D    + EGC+S+  Y A V+R   +
Sbjct: 71  EGKKNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERHDRV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            V+ +        +  +G  A   QHE+DHLNGI++I+
Sbjct: 131 RVKGIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIE 168


>gi|21282827|ref|NP_645915.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483378|ref|YP_040602.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486054|ref|YP_043275.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257425268|ref|ZP_05601693.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427928|ref|ZP_05604326.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430561|ref|ZP_05606943.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433322|ref|ZP_05609680.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436164|ref|ZP_05612211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903768|ref|ZP_06311656.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905532|ref|ZP_06313387.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908508|ref|ZP_06316338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910787|ref|ZP_06318590.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913990|ref|ZP_06321777.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282918912|ref|ZP_06326647.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282924035|ref|ZP_06331711.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|283957956|ref|ZP_06375407.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501023|ref|ZP_06666874.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509982|ref|ZP_06668690.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526570|ref|ZP_06671255.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427700|ref|ZP_06820332.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297208141|ref|ZP_06924572.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297591341|ref|ZP_06949979.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912221|ref|ZP_07129664.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|38604914|sp|Q8NX19|DEFL_STAAW RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81649434|sp|Q6G9Z8|DEFL_STAAS RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81651281|sp|Q6GHM0|DEFL_STAAR RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|21204266|dbj|BAB94963.1| MW1098 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241507|emb|CAG40193.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244497|emb|CAG42926.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|257271725|gb|EEV03863.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274769|gb|EEV06256.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278689|gb|EEV09308.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281415|gb|EEV11552.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284446|gb|EEV14566.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|282314007|gb|EFB44399.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316722|gb|EFB47096.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282322058|gb|EFB52382.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282325392|gb|EFB55701.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327570|gb|EFB57853.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330824|gb|EFB60338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595386|gb|EFC00350.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|283470427|emb|CAQ49638.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ST398]
 gi|283790105|gb|EFC28922.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920642|gb|EFD97705.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096028|gb|EFE26289.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466926|gb|EFF09444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|295128058|gb|EFG57692.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887384|gb|EFH26286.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297576227|gb|EFH94943.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|298694508|gb|ADI97730.1| probable peptide deformylase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886467|gb|EFK81669.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|312438408|gb|ADQ77479.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194101|gb|EFU24494.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 162

 Score = 91.0 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia]
 gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia]
          Length = 196

 Score = 90.6 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ +
Sbjct: 11  QIGDPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70

Query: 65  DHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +        + ++               S   + + EGC+S+  Y A V+R   +
Sbjct: 71  EGKQEQFKPEIYEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVERYDKV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171


>gi|148378868|ref|YP_001253409.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|153931530|ref|YP_001383251.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           19397]
 gi|153936227|ref|YP_001386800.1| putative peptide deformylase [Clostridium botulinum A str. Hall]
 gi|148288352|emb|CAL82429.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|152927574|gb|ABS33074.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932141|gb|ABS37640.1| putative peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 166

 Score = 90.6 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSTKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----HYFINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|258438742|ref|ZP_05689895.1| formylmethionine deformylase [Staphylococcus aureus A9299]
 gi|257848001|gb|EEV71994.1| formylmethionine deformylase [Staphylococcus aureus A9299]
          Length = 162

 Score = 90.6 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++  +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVIRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
           bacterium]
          Length = 163

 Score = 90.6 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 18/161 (11%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD------------------H 66
           N     L+ NM E MY+ DGIGLAA QI    ++VV+D+ D                   
Sbjct: 2   NDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSDKE 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            + ++  +      IT       + EGCLS+P ++A+V+RS  IT+  ++   +   ++A
Sbjct: 62  TNIQHHPLCFINPKITTISGHEKHIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLHA 121

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             LLA C+QHELDHL GILF+D+LS+LK+  + +K  K+++
Sbjct: 122 SNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKVIK 162


>gi|221104975|ref|XP_002163732.1| PREDICTED: similar to peptide deformylase-like protein [Hydra
           magnipapillata]
          Length = 212

 Score = 90.6 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 21/167 (12%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +    DP+LR+V++P+     +  D   L D ++  +   +G G+AA QIGV  +++ +
Sbjct: 31  KVRQIGDPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGIAAPQIGVPLQVIAV 90

Query: 62  DLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +                             V INPKI          +EGCLS+  YRA 
Sbjct: 91  EFTGYDLKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLALKEGCLSVKGYRAM 150

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V R+  I V  ++ +   +   + G  +  +QHE+DHL G LF+D +
Sbjct: 151 VPRAKEIEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDTM 197


>gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis]
 gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis]
          Length = 203

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  S  +      + +I+ ++D M++V+   D +G+AA Q+GV  R++ ++ +
Sbjct: 18  QIGDPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFR 77

Query: 65  DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +                    NPKI    D      EGC+S+  + A V R   +
Sbjct: 78  EEKREQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYDRV 137

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  +        +   G  A   QHE+DHLNGI++ID + 
Sbjct: 138 RVTGIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRMD 178


>gi|312131008|ref|YP_003998348.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311907554|gb|ADQ17995.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 218

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M++  +    DP    IL  +S+ I   +  +  L   M   +    G+G+AA Q+GV  
Sbjct: 40  MMR--ITQTTDPDDLQILSAISQDISPDDPLLPLLAKRMHLAVKQAGGVGIAAPQVGVNR 97

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             + +   D   +       NPKI   S+   +  EGCLSIPD R +V RS  I + Y  
Sbjct: 98  NAIWVQRFDKPGQPFEFYI-NPKITWKSELLQLGAEGCLSIPDTRDNVVRSYAIQLSYSQ 156

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N  H     +G  A   QHE+DHL GILF   +         K   K
Sbjct: 157 LNGAHHTEVIEGFTAVIFQHEIDHLYGILFPQRVDEQNTQEFKKSEEK 204


>gi|89099513|ref|ZP_01172388.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89085666|gb|EAR64792.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 184

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
               ++    P LR+ +  +    +++    +  M+E + ++             GIGLA
Sbjct: 3   TVADIIRDGHPSLRKTAEEVPMPPSAEDKQTLAEMMEYVRNSQNPALAEKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QI  L R++ + + D   +       NPKI++ S + +     +        +   V 
Sbjct: 63  APQIDCLKRMIAVHVTDTDGKLYSFALFNPKIVSHSVEKAFLTSGEGCLSVDEPFPGFVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           R A IT++  D + +   +   GL A   QHE+DHLNG++F DH+++     I K
Sbjct: 123 RYARITLKAFDIDGREVKLRLRGLPAIVFQHEIDHLNGVMFYDHINKENPFEIMK 177


>gi|218507890|ref|ZP_03505768.1| peptide deformylase [Rhizobium etli Brasil 5]
          Length = 155

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R   + + +    
Sbjct: 1   PHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLR---VMVLELDRA 57

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               +++NP I   S +  ++ EG +S+P    D+ R   I  RY D + +     A+  
Sbjct: 58  DGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDITRPRAIRFRYQDVDGRMHDEAAEDF 117

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           LA C+QHE+D L+GI ++  LSRLKRD + KK  K  
Sbjct: 118 LAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 154


>gi|115757064|ref|XP_790987.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115961483|ref|XP_001180273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 186

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)

Query: 1   MVKKP---LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M   P   +    DP+LR  S P+   +    +  +LI  M+ VM  T G+GLAA QIGV
Sbjct: 1   MATPPYNHVTQVGDPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGV 60

Query: 55  LYRLVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100
             ++ V++  +   +                  VF+NP +   SD+  V  EGCLS+  +
Sbjct: 61  AQQVFVMEFTEKHMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGF 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A   R+  + +  ++   +       G  A  LQHE DHL G L+ID + 
Sbjct: 121 TAATPRAHEVEITGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRMD 171


>gi|82750819|ref|YP_416560.1| peptide deformylase 1 [Staphylococcus aureus RF122]
 gi|82656350|emb|CAI80768.1| probable peptide deformylase 1 [Staphylococcus aureus RF122]
 gi|323440990|gb|EGA98697.1| peptide deformylase [Staphylococcus aureus O11]
 gi|323442306|gb|EGA99936.1| peptide deformylase [Staphylococcus aureus O46]
          Length = 162

 Score = 90.6 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +NPKII  S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  I----DMEMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|302332819|gb|ADL23012.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 162

 Score = 90.6 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  +NPKII  S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  I----DMEMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|299534600|ref|ZP_07047932.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1]
 gi|298729973|gb|EFI70516.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1]
          Length = 185

 Score = 90.2 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR  +  ++  +  +   L ++ML            E      GIGLAA Q
Sbjct: 6   DIIREGHPTLRTKAEEVKFPLTEETKKLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108
           +  L R+  + L+D A  +   V INPKI++ S + +     +       +    V R A
Sbjct: 66  VNSLQRMFALHLKDEAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNIPGYVPRHA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV++   + + + +   GL A   QHELDHLNGI+F D ++
Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGIMFYDRIN 168


>gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta]
 gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta]
          Length = 238

 Score = 90.2 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DPILR+ +  + K    + +I  +++ M++V+   + +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               ++ P V    + ++               +     + EGC+S+  Y A+V+R   +
Sbjct: 113 GRVRKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 173 KLTGLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 237

 Score = 90.2 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  +   +    +S ++ L+  M   M +  G+GLAA Q+G+  RL V +
Sbjct: 43  PIVTAGDPVLRTTTARFDGQIDDSTLLELLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE 102

Query: 63  LQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                                  INP     +D    + EGCLSIP Y+A V R   +T+
Sbjct: 103 DPGTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCLSIPGYQAVVARPRTVTL 162

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              D           G     + HE DHL+GIL++D 
Sbjct: 163 TAHDHQGATITKDITGWAGRIIAHETDHLDGILYLDK 199


>gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 203

 Score = 90.2 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 25/175 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P+V+    +LR+ + P+         + +L+  M+ VM    G+GLAA QIGV  +
Sbjct: 1   MELPPIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQ 60

Query: 58  LVVIDLQDHAH----------------------RKNPMVFINPKIITFSDDFSVYQEGCL 95
           ++V++  +                              V             + + EGCL
Sbjct: 61  VIVLEDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCL 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           S+P Y A V+R   + V  +D + +     A G  A  LQHE+DHL G L++D +
Sbjct: 121 SVPGYMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRM 175


>gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
           20098]
 gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQQTVAYTGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP       +   + EGCLS   Y+A  KR   I  
Sbjct: 88  LEDHIRDDEDDPREIGELPFHVIINPVYAPVGTETRSFYEGCLSFDGYQAVRKRWLDIDA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D N  H      G  A   QHE DHL+G L+ID 
Sbjct: 148 EWDDENGMHHKERMHGWPARIFQHETDHLSGELYIDK 184


>gi|70726862|ref|YP_253776.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447586|dbj|BAE05170.1| formylmethionine deformylase [Staphylococcus haemolyticus JCSC1435]
          Length = 183

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  +  +   ++ +  N +  M + + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLRAKAEDVSLPLSDEDKNTLKEMRQFLINSQDDDIAKKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI V  R++ + L D  + K     +    I        Y    +       +    V
Sbjct: 63  APQINVSKRMIAVYLPDDGNGKAYDYMLVNPKIMSHSVQRAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++ +D +     +   G  A   QHE+DHLNG++F D++ 
Sbjct: 123 HRHFRVTIKALDIDGNEVKLRLKGYPAIIFQHEIDHLNGVMFYDYID 169


>gi|289551005|ref|YP_003471909.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180537|gb|ADC87782.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
          Length = 162

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+    P+L+R ++ + + +  +  L+ ++ + +Y  +   L A QIG+  ++ +
Sbjct: 1   MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++     +     INP II  SD+  +  EG +S+P    +V RS  I V+  D    
Sbjct: 61  VDMEMEGLLQ----LINPTIIKVSDEQVIDLEGSISLPGIYGEVARSQMIVVQSYDVQGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  +QH +D +NGI F +   ++
Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKI 149


>gi|89097400|ref|ZP_01170289.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89087696|gb|EAR66808.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 192

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DPILR+ +  +   +N +   +++ M+E                  G+GL+A
Sbjct: 11  MKDIVREGDPILRQKTAEVAVPLNQEDHVIMEMMMEYLKNSQDPELAYKYQLRPGVGLSA 70

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106
            QIG   R+     +D       +   NPKII+ S         +       + +  V R
Sbjct: 71  NQIGEDKRMFAAFFRDEKGEVKELRVFNPKIISHSAAMVYLPEGEGCLSVDREVKGYVPR 130

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I ++Y D   +   +   G+ +  +QHE+DHLNGI+F D +++ 
Sbjct: 131 YERIKIKYSDEKGEQVEMRLKGIASVIVQHEIDHLNGIMFYDRINKE 177


>gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703]
 gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
           L2-32]
 gi|158512525|sp|A1A2Z1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154083357|gb|EDN82402.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
           L2-32]
          Length = 218

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +   +       +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  IMPIVQAGEPVLRQQTIAYDGQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++             A        INP       +   + EGCLS   Y+A  KR   IT
Sbjct: 88  VEDHVCEGDDGDPREAAEFPFHAIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R+ D +      +  G  A   QHE DHL+G L+ID
Sbjct: 148 ARWQDEDGNKHEEHLHGWPARIFQHETDHLSGELYID 184


>gi|315640077|ref|ZP_07895202.1| peptide deformylase [Enterococcus italicus DSM 15952]
 gi|315484205|gb|EFU74676.1| peptide deformylase [Enterococcus italicus DSM 15952]
          Length = 196

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 19/165 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVM------------YSTDGIGLAAVQI 52
           ++    P LR +++ +   +      L  +M E +            +   G+GLAA Q+
Sbjct: 17  IIREGHPTLREIAKEVTFPLTEQEQQLGKDMFEFLVNSQDPIKAEELHLRGGVGLAAPQV 76

Query: 53  GVLYRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106
            V  R++ + +        P       NPKI++ S   +     +       D    V R
Sbjct: 77  NVSKRMIAVLVPSEQEDGEPEFAGVLYNPKIVSHSVQDACLGDGEGCLSVDRDVPGYVVR 136

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A +T+ Y D       I      +  +QHE+DHLNG+LF D ++
Sbjct: 137 HARVTIAYQDETGAAHKIRLKNYPSIVVQHEIDHLNGVLFYDRIN 181


>gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 221

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DPILR+ +RP +    ++++  L + M   M +  G+GLA  Q+G+   + V +
Sbjct: 27  PIVEAGDPILRQTTRPFDGQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86

Query: 63  LQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                                V +N +    + +   + EGCLSIP Y+A V R   I +
Sbjct: 87  DPGSLDPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPRSIEL 146

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             +D N         G  A  + HE DHL+GI+++D 
Sbjct: 147 TGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLDK 183


>gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia]
 gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia]
          Length = 238

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  + K    + +I  +++ M++V+   D +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
               ++ P      + ++                     + EGC+S+  Y A+V+R   +
Sbjct: 113 GRIRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 173 KLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|322805193|emb|CBZ02757.1| peptide deformylase related protein [Clostridium botulinum H04402
           065]
          Length = 166

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----HYFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|239636405|ref|ZP_04677407.1| peptide deformylase [Staphylococcus warneri L37603]
 gi|239597760|gb|EEQ80255.1| peptide deformylase [Staphylococcus warneri L37603]
          Length = 183

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAQELSFPLSNEDKETLKAMREFLINSQDDDIAKKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI V  R++ + L D  + K+    +    +        Y    +       +    V
Sbjct: 63  APQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   +T++  D +     +   G  A   QHE+DHLNGI+F DH+  
Sbjct: 123 HRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHIDD 170


>gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 214

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVV- 60
            P+V   DP+LR  + P E    + +           M    G+GLAA QIGV  RL V 
Sbjct: 24  LPIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVL 83

Query: 61  ---------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                    +            V +NP      +  + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPATVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +R  D + +       G  A  +QHE DHL+G L++D 
Sbjct: 144 LRAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDR 181


>gi|154685863|ref|YP_001421024.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
 gi|154351714|gb|ABS73793.1| DefB [Bacillus amyloliquefaciens FZB42]
          Length = 184

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 16/164 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52
           +V    P LR ++  ++   + +    + +M+E                  G+GLAA Q 
Sbjct: 7   IVRDGHPALREIAEEVQLPASDEEKQHLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQT 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
            V  R++ +  +D           NPKI++ S + S     +            V R A 
Sbjct: 67  DVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVPRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I V+ +    +   I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 127 IRVKAVTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|256842908|ref|ZP_05548396.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|293381229|ref|ZP_06627236.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|312977571|ref|ZP_07789318.1| peptide deformylase [Lactobacillus crispatus CTV-05]
 gi|256614328|gb|EEU19529.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|290922197|gb|EFD99192.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|310895310|gb|EFQ44377.1| peptide deformylase [Lactobacillus crispatus CTV-05]
          Length = 184

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +V   DP+LR+V++P+    +     L D+M+            E      G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D   +           I             +            V 
Sbjct: 64  PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|283470302|emb|CAQ49513.1| peptide deformylase [Staphylococcus aureus subsp. aureus ST398]
          Length = 183

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR+ +  +E     +    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPFTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + + D    K+    +    I        Y    +       +    V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|27467808|ref|NP_764445.1| putative polypeptide deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57866753|ref|YP_188364.1| polypeptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251810645|ref|ZP_04825118.1| possible peptide deformylase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876353|ref|ZP_06285220.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|39931130|sp|Q8CPI9|DEFL_STAES RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81674925|sp|Q5HPX6|DEFL_STAEQ RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|27315352|gb|AAO04487.1|AE016746_277 putative polypeptide deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637411|gb|AAW54199.1| polypeptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251805805|gb|EES58462.1| possible peptide deformylase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295378|gb|EFA87905.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|319401492|gb|EFV89702.1| polypeptide deformylase family protein [Staphylococcus epidermidis
           FRI909]
 gi|329730010|gb|EGG66401.1| peptide deformylase [Staphylococcus epidermidis VCU144]
 gi|329736235|gb|EGG72507.1| peptide deformylase [Staphylococcus epidermidis VCU028]
          Length = 162

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +  +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVKSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I       ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  I----DMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
              + A   +A  + H +DHLNGI F   
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145


>gi|291513863|emb|CBK63073.1| peptide deformylase [Alistipes shahii WAL 8301]
          Length = 202

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 10/156 (6%)

Query: 3   KKPLVIFPDP----ILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIG--LAAVQIG 53
              ++   +P    +LR+ + P+        D   L   ML  +      G  +AA Q+G
Sbjct: 39  IMRILTVGNPADSLVLRQKAAPVTGRMLRTDDYAVLRRRMLATVQDPQNTGVGIAAPQVG 98

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +L R++ +   D              + + ++     +  CLSIP     V R+  I +R
Sbjct: 99  ILRRMIAVQRFDKPGEPFEFYLNPEIVESSAETAPGREG-CLSIPGLAGTVVRAQRIVLR 157

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Y D     +    DG  A   QHE DHL+GIL+ D 
Sbjct: 158 YPDERFAEKTETIDGFTAVIFQHETDHLDGILYTDR 193


>gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster]
 gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster]
 gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster]
 gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct]
          Length = 238

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  + K    + +I  +++ M++V+   D +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               ++ P               +FINP +   +     + EGC+S+  Y A+V+R   +
Sbjct: 113 GRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 173 KLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|310827878|ref|YP_003960235.1| peptide deformylase [Eubacterium limosum KIST612]
 gi|308739612|gb|ADO37272.1| peptide deformylase [Eubacterium limosum KIST612]
          Length = 148

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M K PL    DP+L++  + ++ ++  I +L++ M+  +  +     LAA Q+G+L +LV
Sbjct: 1   MPKLPLHYNDDPVLKQKCQSVQVVDDSIRSLLNAMMNTLQLTPGAAALAANQVGILLQLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID   +  +      ++ +            E CLS P       R   + VR +D N 
Sbjct: 61  VIDYAGYHLKLVNPEILDTEGSR------ECMESCLSFPGRHIMTLRPRAVRVRALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
               +   G +A CL HE+DHL GI+FI+ 
Sbjct: 115 VVIYLDVSGEMAKCLCHEIDHLRGIVFIER 144


>gi|170761484|ref|YP_001786248.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408473|gb|ACA56884.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 166

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R S  I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----HYFINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|315658500|ref|ZP_07911372.1| peptide deformylase [Staphylococcus lugdunensis M23590]
 gi|315496829|gb|EFU85152.1| peptide deformylase [Staphylococcus lugdunensis M23590]
          Length = 162

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+    P+L+R ++ + + +  +  L+ ++ + +Y  +   L A QIG+  ++ +
Sbjct: 1   MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        +  +  INP II  SD+  +  EG +S+PD   +V RS  I V+  D    
Sbjct: 61  V----DMEMEGLLQLINPTIIKASDEQVIDLEGSISLPDIYGEVARSQMIVVQSYDVQGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  +QH +D +NGI F +   ++
Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKI 149


>gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
 gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
          Length = 166

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V++ DP LR  +  I   +  +  L   ML+V Y  DG+GL+A Q+GV  RL+V + 
Sbjct: 6   LSIVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNP 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +    +    VF+NP I+ F  +         S        +      ++  D N +   
Sbjct: 63  EGERGKGKEYVFVNPMIVKFGKEREAR----FSFIACVFVSRDRYRSELKAQDINGKKFG 118

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
               G  A   +HE DHL G+L+ID ++    + I +++
Sbjct: 119 TAFRGWTAGIFRHEYDHLEGVLYIDQMTPKSLNSIGQEL 157


>gi|153938041|ref|YP_001390224.1| putative peptide deformylase [Clostridium botulinum F str.
           Langeland]
 gi|152933937|gb|ABS39435.1| putative peptide deformylase [Clostridium botulinum F str.
           Langeland]
 gi|295318318|gb|ADF98695.1| putative peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 166

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R+S+ I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISKKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----HYFINPILEFIGEDTFYIWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRARDLKSFRINK 161


>gi|300770446|ref|ZP_07080325.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762922|gb|EFK59739.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 430

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPD--PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLY 56
           M     V  P+   IL+  S+ I+  +  +  L   M   +      G+G+AA Q+G+  
Sbjct: 253 MYVLQ-VTEPNDLEILKAPSQDIKYDDPLLDLLSQRMYATVNDPDHSGVGIAAPQVGINK 311

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             + +   D           NPKII  S       EGCLSIP  + DV RS  I ++Y++
Sbjct: 312 NAIWVQRFDKKDTPFEFYV-NPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVN 370

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                     +G  A   QHE+DHL GILF D L 
Sbjct: 371 KTGDIIEENIEGFTAVIFQHEVDHLYGILFTDRLE 405


>gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 14/160 (8%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V    P+LRR + P E   S   +  L+  M E M +  G+GLAA QIG+  R+ VI
Sbjct: 20  LPIVAAGVPVLRRPALPYEGQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVI 79

Query: 62  DLQDH----------AHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAF 109
           +                     V +NP           + + EGCLS+P ++A V R   
Sbjct: 80  EDPAEVSAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPER 139

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           I +R  D   +       G  A  +QHE DHL+G L++D 
Sbjct: 140 IRLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDR 179


>gi|323488852|ref|ZP_08094092.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2]
 gi|323397550|gb|EGA90356.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2]
          Length = 188

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K ++    P LR  +  ++  ++ +   L +++LE                  G+G+AA
Sbjct: 4   MKDIIREGHPTLRERAEEVKFPLSEEDRQLGEDLLEYVVNSQDDELAEKYDLRPGVGIAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106
            Q+    R+  +   D+      +V  NPKI++ S + +     +            V R
Sbjct: 64  PQVNQAKRIFALHFDDNTGENLSLVVFNPKIVSHSVEKTYLAAGEGCLSVDRAVPGYVPR 123

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A IT++ ++ N +   +   GL A   QHELDHLNG++F DH+  
Sbjct: 124 YARITIKALNINGEEIKMRLKGLPAIAFQHELDHLNGVMFFDHIDS 169


>gi|289551097|ref|YP_003472001.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180629|gb|ADC87874.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
          Length = 183

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ ++  ++ +    + +M E + ++               GLA
Sbjct: 3   TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  +++ + L D  + ++  + +    +        Y    +       +    V
Sbjct: 63  APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKNIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +TV+  D + +   +   G  A  +QHE+DHLNGI+F DH+ 
Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169


>gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 194

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+L   +  + + +   + I   I++M++VM +  G+GLAA QIG+  +++V++  
Sbjct: 3   QAGDPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLEDT 62

Query: 65  DHAHRKNPMVFINPKIITFSD---------------DFSVYQEGCLSIPDYRADVKRSAF 109
                         +  T  D                 + + EGCLS+  +RA V+R   
Sbjct: 63  KELMSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERHLE 122

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + V  +  + Q     A G  A  LQHE DHL G+L++D + +
Sbjct: 123 VEVTGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRMVK 165


>gi|302870289|ref|YP_003838926.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503435|ref|YP_004082322.1| formylmethionine deformylase [Micromonospora sp. L5]
 gi|302573148|gb|ADL49350.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315410054|gb|ADU08171.1| formylmethionine deformylase [Micromonospora sp. L5]
          Length = 187

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV 60
             + +V  P+P+L R    ++  +++++ L  +++  M  +   +GLAA Q+GV  ++  
Sbjct: 22  AVRAVVTAPEPVLSRPGPEVDPTSAEVVRLAADLVATMRVSPGCVGLAAPQVGVSAQVFA 81

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DC 117
           +D+     A   +    +    +  +  +   +EGC+S+PD   DVKR++ + V      
Sbjct: 82  VDVTGHPKAVTVHGTFVLCNARVVEASRWKAGREGCMSVPDLTGDVKRASRLVVEGALPG 141

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +   +  DG  A  LQHE+DH  G+LF+D +
Sbjct: 142 SGEPVRLVTDGFEARALQHEIDHCAGLLFLDRV 174


>gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans]
 gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans]
          Length = 239

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  + K    + +I  +++ M++V+   D +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
               ++ P      + ++                     + EGC+S+  Y A+V+R   +
Sbjct: 113 GRIRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 173 KLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018]
 gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
 gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
          Length = 217

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
              +V   +P+LR+ +   +     + +  LI  M   M    G+GLAA QIG+   + V
Sbjct: 28  VLSIVQAGEPVLRQRTVAYDGQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAV 87

Query: 61  IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P           INP           + EGCLS+  Y+A  +R   I  
Sbjct: 88  VEDHVRDDADDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWLDIQA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D + +       G  A   QHE DHL G L+ID 
Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDR 184


>gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 218

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LR+     +     + +   ++ +   M++  G+GLAA Q+GV  R+ VI
Sbjct: 24  LPIVAAGDPVLRQGIEHYDGHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIAVI 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                 +   V +NP         + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPAPVPEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARPAEVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +   D N +       G  A  +QHE DHL+G+L++D 
Sbjct: 144 LTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLDR 181


>gi|73663007|ref|YP_301788.1| peptide deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495522|dbj|BAE18843.1| formylmethionine deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 183

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++ +  N +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKDVTLPLSEEDRNTLLAMREFLINSQDDEIATKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  +++ + L D  + K+  + +    I        Y    +       +    V
Sbjct: 63  APQINISKKMIAVYLPDDGNGKSYDLMLVNPKIMSHSIQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   ITV+  D + +   +   G  A  +QHE+DH+NGI+F DH+  
Sbjct: 123 HRKNRITVKATDIDGKEVKLRLKGYPAVVVQHEIDHINGIMFYDHIDP 170


>gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 213

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 16/161 (9%)

Query: 6   LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  + P+  EKI   ++ NLI  M  +M  ++ IGLAA Q+G+ +++ VI 
Sbjct: 27  VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86

Query: 63  LQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
                                   V+INP++   + +   + E C S   Y ADV R   
Sbjct: 87  FPRPSHYFSKEEILLKGMEHVENQVWINPELKVLNHEKVTFNESCASFKGYSADVPRYKR 146

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +  +D N + + + A    A  +QHE+DHLNG+++ D +
Sbjct: 147 VLLTGIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRM 187


>gi|222104825|ref|YP_002539314.1| peptide deformylase [Escherichia coli]
 gi|8571125|gb|AAF76758.1|AF218073_7 unknown [Escherichia coli]
 gi|221589252|gb|ACM18249.1| peptide deformylase [Escherichia coli]
          Length = 150

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCL 134
              + ADGLLA C+
Sbjct: 118 PFELEADGLLAICI 131


>gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba]
 gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba]
          Length = 196

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +   +    +I  +I+ M++V+   D +G+AA Q+G+  R++V++ +
Sbjct: 11  QIGDPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70

Query: 65  DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +                    NP++   S   + + EGC+S+  + A+V+R   +
Sbjct: 71  EGKQEQFKPEVYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVERYDKV 130

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171


>gi|170755594|ref|YP_001780500.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|169120806|gb|ACA44642.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra]
          Length = 166

 Score = 88.7 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++             G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHNTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----HYFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|269959028|ref|YP_003328817.1| putative polypeptide deformylase [Anaplasma centrale str. Israel]
 gi|269848859|gb|ACZ49503.1| putative polypeptide deformylase [Anaplasma centrale str. Israel]
          Length = 195

 Score = 88.7 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63
            +L+  S P+EK++ +I  L+D M +V+ ++  +G +A+Q+GV  R+  I++        
Sbjct: 13  KVLQTKSSPVEKVDDEIFELVDRMAKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAA 72

Query: 64  --------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                          N +      +    +   +++    +       + R   + ++Y 
Sbjct: 73  QDIKVLSGYHSLSGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           D      +I A   LA C+QHELDHLNG+L
Sbjct: 133 DLMGNECVIRAYNWLARCIQHELDHLNGVL 162


>gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 217

 Score = 88.7 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR      +   S   +  LI+ M + M    G+GLA  QIG+   + V
Sbjct: 27  VLPIVEAGEPVLREQCVRYDGQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAV 86

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++                      INP      ++   + EGCLS   Y+A  KR   I 
Sbjct: 87  VEDHANGDDDGDPREIAEFPFHAIINPVYRPAGEETRSFYEGCLSFDGYQAVRKRYLDII 146

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + D + +    +  G  A   QHE DHL+G L+ID
Sbjct: 147 AHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYID 183


>gi|168178266|ref|ZP_02612930.1| putative peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182670881|gb|EDT82855.1| putative peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 166

 Score = 88.7 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAEQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKT-----HYFINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|224476206|ref|YP_002633812.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420813|emb|CAL27627.1| type II peptide deformylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 184

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +E  ++++  N I  M E + ++               G+A
Sbjct: 3   TMKDIIRDGHPTLREKAKEVEFPLSNEDRNKIQEMHEFLVNSQDDEIAKKYGLRSGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A Q+ +  R++ + L D    K+  + +    I        Y    +       D    V
Sbjct: 63  APQLNISKRMLAVHLPDDGEGKSYELMLINPKIVSYSVQEAYLPTGEGCLSVDEDIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            R   +TV+  D +     +   G +A  +QHE+DHL+GI+F DH+ + 
Sbjct: 123 HRHNRVTVKAKDIDGNDINLRLKGYIAIVVQHEIDHLDGIMFYDHIDKE 171


>gi|319649756|ref|ZP_08003909.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
 gi|317398510|gb|EFV79195.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
          Length = 183

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLA 48
             K ++    P LR+++  +    +++ + ++  M+E + ++              IGLA
Sbjct: 3   SMKDIIRDGHPTLRKIAAEVNMPPSAEEIQILKEMMEYVKNSQDPELSAKYGLRAGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKR 106
           A QI V  R++ + +  +    +  +F    I         +  +            V R
Sbjct: 63  APQINVSRRMIAVHVTYNQDLYSYALFNPKIISHSVQLSYLAEGEGCLSVDESIPGFVPR 122

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A +TV+  D       +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 123 YAKVTVKGTDLQGNEVKLKLKGLPAIVFQHEIDHLNGIMFYDHINK 168


>gi|323692973|ref|ZP_08107194.1| peptide deformylase [Clostridium symbiosum WAL-14673]
 gi|323502974|gb|EGB18815.1| peptide deformylase [Clostridium symbiosum WAL-14673]
          Length = 150

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + +    D ILR+  + +++++  I  ++D+ML+ +    +G  LA  Q+G+L RLV
Sbjct: 1   MAIRQMRYNDDEILRKRCKEVKEVDDKIRVMLDDMLDTLRHTENGAALATNQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI+      +      I               EGCLS P    +  R   +TV+ +D   
Sbjct: 61  VIEYCGELLKLVNPKIIGR------SGTQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Q  I+  +G +A C  HEL+HL+G +F+D 
Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144


>gi|90961626|ref|YP_535542.1| peptide deformylase [Lactobacillus salivarius UCC118]
 gi|227890713|ref|ZP_04008518.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|301299265|ref|ZP_07205551.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122993074|sp|Q1WU76|DEF_LACS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90820820|gb|ABD99459.1| Peptide deformylase [Lactobacillus salivarius UCC118]
 gi|227867651|gb|EEJ75072.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|300214436|gb|ADJ78852.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus
           salivarius CECT 5713]
 gi|300853109|gb|EFK80707.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 186

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52
           ++   +P LR  ++ IE  ++ +   L  +M+E              +   G+GLAA Q+
Sbjct: 7   IIRDGNPTLRARAKAIEFPLSEEDKKLAHDMMEFLENSQNPEIAKKYHLRAGVGLAAPQV 66

Query: 53  GVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVKR 106
            V  R+  +    ++D        V INP I++ S   +     +       D    V R
Sbjct: 67  DVSKRMTAVLVPGIEDDDEPIFKHVLINPTILSESVQLAALGEGEGCLSVDRDIPGYVPR 126

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I +R+ D +    +       A  +QHE+DHLNGILF DH+++ +
Sbjct: 127 HDRIKLRWYDLDGNKHVERLRDYPAIVVQHEIDHLNGILFYDHINKEQ 174


>gi|315658596|ref|ZP_07911467.1| peptide deformylase [Staphylococcus lugdunensis M23590]
 gi|315496385|gb|EFU84709.1| peptide deformylase [Staphylococcus lugdunensis M23590]
          Length = 183

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ ++  ++ +    + +M E + ++               GLA
Sbjct: 3   TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  +++ + L D  + ++  + +    +        Y    +       +    V
Sbjct: 63  APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVISYSVQYAYLPTGEGCLSVDKNIAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +TV+  D + +   +   G  A  +QHE+DHLNGI+F DH+ 
Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169


>gi|293376283|ref|ZP_06622524.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325842152|ref|ZP_08167617.1| peptide deformylase [Turicibacter sp. HGF1]
 gi|292645101|gb|EFF63170.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325489718|gb|EGC92076.1| peptide deformylase [Turicibacter sp. HGF1]
          Length = 184

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48
             K ++    P L +V+  +   ++ + + L+ +ML+                 + +GLA
Sbjct: 3   TMKDIIREGHPTLSKVASEVAIPLSKEDVQLMKDMLQFIINSQTPEVAKKYQLRESVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVK 105
           A Q+ +  R++ +  +D   +   +   NPKI+++S++ +   + +       +    V 
Sbjct: 63  APQLNLDKRIIAVHTEDEKGKLYSLALANPKIVSYSEEITYLPMGEGCLSVDREVEGFVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   ITV   +   +         ++   QHE+DHLNG LFIDH+  
Sbjct: 123 RYRRITVEGYNLKGEKIKFRLRDYVSIVFQHEIDHLNGHLFIDHIDP 169


>gi|325956526|ref|YP_004291938.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|325333091|gb|ADZ06999.1| peptide deformylase [Lactobacillus acidophilus 30SC]
          Length = 184

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D   +           I             +            V 
Sbjct: 64  PQVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDKVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|293366820|ref|ZP_06613496.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319121|gb|EFE59491.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736680|gb|EGG72946.1| peptide deformylase [Staphylococcus epidermidis VCU045]
          Length = 162

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +  +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVNSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I       ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  I----DMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
              + A   +A  + H +DHLNGI F   
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145


>gi|167044672|gb|ABZ09343.1| putative Polypeptide deformylase [uncultured marine microorganism
           HF4000_APKG7H23]
          Length = 179

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 11/156 (7%)

Query: 1   MVKKPLVIFPDPILRRV-----SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL   PD +LR       +R ++  +  +  LID M+E M+  +G+G+A+ Q+G  
Sbjct: 1   MAIRPLRYLPDQLLRTKTVSLRARDVQ--SPAVQRLIDEMIESMHHYNGVGIASNQVGSR 58

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           YR+ +I   +      P V +NP+I     +  V +  CLS+P Y+  + RS  + V  +
Sbjct: 59  YRICIIQRPEEDAV--PFVLVNPRITRREGEREVTEG-CLSLPGYQGGIVRSERVWVTAL 115

Query: 116 DCNAQHQIIYAD-GLLATCLQHELDHLNGILFIDHL 150
           D   +   +  + GLLA  L+HE DHL+G+ FIDHL
Sbjct: 116 DRQGKQVQLRGETGLLAQALEHETDHLDGVAFIDHL 151


>gi|260101766|ref|ZP_05752003.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
 gi|260084410|gb|EEW68530.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
          Length = 181

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L ++M+E                  G+GLAA
Sbjct: 1   MKDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D               I             +            V 
Sbjct: 61  PQVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++ +
Sbjct: 121 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKE 169


>gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis]
 gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis]
          Length = 238

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +        +I  +++ M++V+   + +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
               ++ P      + ++      +              + EGC+S+  + A+V+R   +
Sbjct: 113 KSLQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D +++   +   G  A   QHE+DHL+G L+ D + R
Sbjct: 173 KLSGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214


>gi|315038072|ref|YP_004031640.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|312276205|gb|ADQ58845.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
          Length = 184

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D   +           I             +            V 
Sbjct: 64  PQVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818]
          Length = 214

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 18/165 (10%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            ++    P+LR  + PI   +  +  I NL+D++   +    G GL A QIG   +L V+
Sbjct: 15  KIIEAGHPVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLFVM 74

Query: 62  DLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           ++                   R  P+  I    + +    S ++E CLSIP Y A V R 
Sbjct: 75  EVTPDMIELETNFRDIKMLDMRPVPLTAIANPRLKYGKKMSTHRESCLSIPGYSAHVTRP 134

Query: 108 AFITVRY-MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I +            +   G  A  +QHE+DHLNG L+ D + 
Sbjct: 135 VDIHLTGLCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKMD 179


>gi|15924081|ref|NP_371615.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926677|ref|NP_374210.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315]
 gi|148267584|ref|YP_001246527.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393639|ref|YP_001316314.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979414|ref|YP_001441673.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316344|ref|ZP_04839557.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005878|ref|ZP_05144479.2| peptide deformylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795178|ref|ZP_05644157.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|258407113|ref|ZP_05680262.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|258421795|ref|ZP_05684716.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|258436159|ref|ZP_05689142.1| peptide deformylase [Staphylococcus aureus A9299]
 gi|258443352|ref|ZP_05691695.1| peptide deformylase [Staphylococcus aureus A8115]
 gi|258444962|ref|ZP_05693279.1| peptide deformylase [Staphylococcus aureus A6300]
 gi|258449863|ref|ZP_05697961.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224]
 gi|258454962|ref|ZP_05702925.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937]
 gi|269202702|ref|YP_003281971.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894118|ref|ZP_06302349.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|282928613|ref|ZP_06336210.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|295405895|ref|ZP_06815704.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|296276492|ref|ZP_06858999.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246365|ref|ZP_06930209.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|56749813|sp|P68825|DEF_STAAM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749814|sp|P68826|DEF_STAAU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749815|sp|P99077|DEF_STAAN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase
 gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase
 gi|75766236|pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase
 gi|75766237|pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase
 gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus aureus]
 gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp. aureus N315]
 gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147740653|gb|ABQ48951.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946091|gb|ABR52027.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721549|dbj|BAF77966.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257789150|gb|EEV27490.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|257841268|gb|EEV65713.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|257842128|gb|EEV66556.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|257848848|gb|EEV72833.1| peptide deformylase [Staphylococcus aureus A9299]
 gi|257851442|gb|EEV75381.1| peptide deformylase [Staphylococcus aureus A8115]
 gi|257856084|gb|EEV79002.1| peptide deformylase [Staphylococcus aureus A6300]
 gi|257856783|gb|EEV79686.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224]
 gi|257862842|gb|EEV85607.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937]
 gi|262074992|gb|ACY10965.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589652|gb|EFB94738.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|282763604|gb|EFC03733.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|285816772|gb|ADC37259.1| Peptide deformylase [Staphylococcus aureus 04-02981]
 gi|294969330|gb|EFG45350.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|297176731|gb|EFH35991.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|312829485|emb|CBX34327.1| peptide deformylase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130323|gb|EFT86310.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725200|gb|EGG61689.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 183

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + + D    K+    +    I        Y    +       +    V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 221

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 4   KPLVIFPDPILRRVSRP-IEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LR  + P + +++   +  LI+ M   M    G+G+AA QIG+     V+
Sbjct: 32  LPMVEVGDPVLRAQAEPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQIGLSLAFAVV 91

Query: 62  DLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +                    V INP      D  + + EGCLS P ++A  +R   I  
Sbjct: 92  EDHTSEEYDDDPREFAEFPFHVIINPSYDPVGDKTAKFFEGCLSFPGFQAVRERYVDIMA 151

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            + D           G  A   QHE DHL+G ++ID 
Sbjct: 152 HWTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYIDK 188


>gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) [Xenopus (Silurana) tropicalis]
 gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
 gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
          Length = 239

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +   P  +I+  D   +++ M+ V+ +   +GL+A QIGV  R++ +     
Sbjct: 67  GDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQ 126

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            ++  P               +FINP++         + EGC S+  + A V R   + +
Sbjct: 127 MYQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYYAVEL 186

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + M+   +H    A G  A  +QHE+DHL+G+L+ID +  
Sbjct: 187 QGMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDP 226


>gi|149201579|ref|ZP_01878553.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144627|gb|EDM32656.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 149

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 2/149 (1%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
            + P+ +I      L + M+ VM +  G+GLAA Q+G +  L V+D      R   +   
Sbjct: 2   PAAPLPEITDQTRALWNEMIAVMEAMPGVGLAATQLGEMQALAVVDA--STARGQAVRMA 59

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP+I+  S     ++E    +P   A ++R   +TVR+++ +A+ +     GL AT +QH
Sbjct: 60  NPEILHASVQLRPHEEASPCLPGVSAMIERPRAVTVRFLNADAEVEERDFVGLWATSVQH 119

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ++DHL G ++ D L R+KRDM+ ++  K+
Sbjct: 120 QIDHLQGRMYFDRLGRVKRDMLLRRARKI 148


>gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
 gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
          Length = 238

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +        +I  +++ M++V+   + +G+AA QIGV  R++ ++ +
Sbjct: 53  QIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFK 112

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110
               ++ P      + ++      +              + EGC+S+  + A+V+R   +
Sbjct: 113 KSLQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGV 172

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D +++   +   G  A   QHE+DHL+G L+ D + R
Sbjct: 173 KLSGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214


>gi|242373312|ref|ZP_04818886.1| peptide deformylase [Staphylococcus epidermidis M23864:W1]
 gi|242349022|gb|EES40624.1| peptide deformylase [Staphylococcus epidermidis M23864:W1]
          Length = 183

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   I+ +    + +M E + ++               GLA
Sbjct: 3   TMKDIIKDGHPTLREKAKELSFPISEEDKETLRSMREFLINSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI V  R++ + L D  + K+    +    +        Y    +       +    V
Sbjct: 63  APQINVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSHSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNG++F DH+ 
Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDHID 169


>gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 179

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            L+   +  LRR+  P+  +   ++  L + M + +   DG+G+AA Q+G   RL ++ +
Sbjct: 9   ELIFLGNSALRRICEPVFDVKCPEMKRLAEAMRKQLIEQDGVGIAAPQLGANCRLFLMSM 68

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            + ++        NPK+  FS +     EGCLS+P Y   VKRS  I V+Y       + 
Sbjct: 69  -EESNVSALEAVFNPKVTFFSKEMEKDFEGCLSVPHYSGIVKRSREIQVQYSTALGMKEK 127

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152
              +G  A   QHELDHLNG+LF+D +  
Sbjct: 128 RTLEGFPARVFQHELDHLNGVLFLDKVEP 156


>gi|242242497|ref|ZP_04796942.1| possible peptide deformylase [Staphylococcus epidermidis W23144]
 gi|242234071|gb|EES36383.1| possible peptide deformylase [Staphylococcus epidermidis W23144]
          Length = 162

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL ++ +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I       ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  I----DMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
              + A   +A  + H +DHLNGI F   
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145


>gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
           aegypti]
 gi|108884464|gb|EAT48689.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
           aegypti]
          Length = 243

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +   P+E +   ++  L+ +M+ VM   D +GLAA QIG+  +++V++ +
Sbjct: 57  QIGDPVLRQTAAMVPVEAVTSPEVKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFE 116

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      V INP++   + +   + E C S+  Y  +V R A +
Sbjct: 117 DRLKKHYTNAEYKIKEMETLPLTVMINPEMKITNYEKISFPESCASVKGYSGEVARYAGV 176

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D N Q + +   G  A   QHE+DHLNG+++ D + R
Sbjct: 177 LLSGLDENGQSKEMELKGWNARIAQHEMDHLNGVVYTDVMKR 218


>gi|329769034|ref|ZP_08260456.1| peptide deformylase 2 [Gemella sanguinis M325]
 gi|328839525|gb|EGF89101.1| peptide deformylase 2 [Gemella sanguinis M325]
          Length = 184

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR+ +  +   I+ +   ++ ++LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHETLRKRAEEVKSPISDEDKEILRSLLEYVIASQDDEKAEELGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRAD 103
           A QI V  R++ + + D  + +  + +                 +  +       + +  
Sbjct: 63  APQINVSKRMIAVHIPDEENPEYTVSYALYNPKIISNSAAKCYLAGGEGCLSVEEEKKGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R + I V   D N +   +    L A C QHE+DHLNGI+F DH+++
Sbjct: 123 VPRYSKIKVIGYDENDEKVTLVLTDLPAICFQHEIDHLNGIMFYDHINK 171


>gi|21282703|ref|NP_645791.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483254|ref|YP_040478.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485929|ref|YP_043150.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651700|ref|YP_185964.1| peptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|82750701|ref|YP_416442.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|87161441|ref|YP_493689.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194790|ref|YP_499587.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221169|ref|YP_001331991.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509274|ref|YP_001574933.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140509|ref|ZP_03565002.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257425143|ref|ZP_05601569.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427806|ref|ZP_05604204.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430441|ref|ZP_05606823.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433143|ref|ZP_05609501.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436042|ref|ZP_05612089.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|258423591|ref|ZP_05686481.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|258451962|ref|ZP_05699978.1| polypeptide deformylase 2 [Staphylococcus aureus A5948]
 gi|262048678|ref|ZP_06021560.1| peptide deformylase [Staphylococcus aureus D30]
 gi|262052225|ref|ZP_06024431.1| peptide deformylase [Staphylococcus aureus 930918-3]
 gi|282903640|ref|ZP_06311528.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905409|ref|ZP_06313264.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908381|ref|ZP_06316212.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910668|ref|ZP_06318471.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913866|ref|ZP_06321653.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282916341|ref|ZP_06324103.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|282918790|ref|ZP_06326525.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282923912|ref|ZP_06331588.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282925275|ref|ZP_06332932.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|283770153|ref|ZP_06343045.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|283957835|ref|ZP_06375286.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024016|ref|ZP_06378414.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132]
 gi|293500903|ref|ZP_06666754.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509859|ref|ZP_06668568.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526445|ref|ZP_06671130.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848080|ref|ZP_06788827.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295427579|ref|ZP_06820211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|39930904|sp|Q8NX78|DEF_STAAW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56748622|sp|Q6GAC3|DEF_STAAS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56748624|sp|Q6GHZ4|DEF_STAAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71153335|sp|Q5HGZ3|DEF_STAAC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241383|emb|CAG40067.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244372|emb|CAG42800.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285886|gb|AAW37980.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|82656232|emb|CAI80645.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|87127415|gb|ABD21929.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202348|gb|ABD30158.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373969|dbj|BAF67229.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368083|gb|ABX29054.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257272119|gb|EEV04251.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274647|gb|EEV06134.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278569|gb|EEV09188.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281236|gb|EEV11373.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284324|gb|EEV14444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|257846292|gb|EEV70316.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|257860177|gb|EEV83009.1| polypeptide deformylase 2 [Staphylococcus aureus A5948]
 gi|259159896|gb|EEW44934.1| peptide deformylase [Staphylococcus aureus 930918-3]
 gi|259163134|gb|EEW47694.1| peptide deformylase [Staphylococcus aureus D30]
 gi|269940586|emb|CBI48965.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282313884|gb|EFB44276.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316600|gb|EFB46974.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282319781|gb|EFB50129.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|282321934|gb|EFB52258.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282325273|gb|EFB55582.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328046|gb|EFB58328.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330701|gb|EFB60215.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282592551|gb|EFB97561.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282595258|gb|EFC00222.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|283460300|gb|EFC07390.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|283789984|gb|EFC28801.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920517|gb|EFD97580.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095908|gb|EFE26169.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467309|gb|EFF09826.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|294824880|gb|EFG41302.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295127937|gb|EFG57571.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|298694326|gb|ADI97548.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED133]
 gi|302332701|gb|ADL22894.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750915|gb|ADL65092.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|315193760|gb|EFU24155.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196121|gb|EFU26478.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323440640|gb|EGA98350.1| peptide deformylase [Staphylococcus aureus O11]
 gi|323441667|gb|EGA99313.1| peptide deformylase [Staphylococcus aureus O46]
 gi|329313759|gb|AEB88172.1| Peptide deformylase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728776|gb|EGG65197.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193]
 gi|329730791|gb|EGG67170.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 183

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + + D    K+    +    I        Y    +       +    V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|327183352|gb|AEA31799.1| peptide deformylase [Lactobacillus amylovorus GRL 1118]
          Length = 184

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + +   +           I             +            V 
Sbjct: 64  PQVGESVQMAALLVPNDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|284117858|ref|ZP_06386753.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829473|gb|EFC33840.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 160

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%)

Query: 18  SRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + P++     +      ID+M E M + +GIGLAA Q+    +L+ +   D        V
Sbjct: 2   AEPVDPAIIPSRAYQQFIDDMFETMDAYEGIGLAAPQVSRSEQLI-VMRCDGQDAIPETV 60

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            INP+I+ +    +   EGCLS+   R  V R + I V+ +D   +     A GL   C+
Sbjct: 61  LINPRIVFYGPAQAEMWEGCLSVDGLRGKVTRPSSIRVQALDREGRSVDFEASGLFGVCI 120

Query: 135 QHELDHLNGILFIDHLSRL 153
           QHE+DHL G LF+D ++ L
Sbjct: 121 QHEMDHLIGKLFLDRMTDL 139


>gi|227877349|ref|ZP_03995420.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|256848717|ref|ZP_05554151.1| peptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|295692713|ref|YP_003601323.1| peptide deformylase [Lactobacillus crispatus ST1]
 gi|227863017|gb|EEJ70465.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|256714256|gb|EEU29243.1| peptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|295030819|emb|CBL50298.1| Peptide deformylase [Lactobacillus crispatus ST1]
          Length = 184

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L D+M+            E      G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D   +           I             +            V 
Sbjct: 64  PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|76253777|ref|NP_001028902.1| hypothetical protein LOC619248 [Danio rerio]
 gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio]
 gi|148725884|emb|CAN87858.1| novel protein (zgc:114141) [Danio rerio]
          Length = 247

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  +E       ++  +I  +++VM   + +GL+A QIGV  R++ ++  
Sbjct: 73  QVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYP 132

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                +                M+FINP++        ++QE C SI  Y A V R   +
Sbjct: 133 KKMLEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSV 192

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V  ++  A+     A G  A  LQHE+DHLNG+L+IDH+  
Sbjct: 193 EVSGLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMDS 234


>gi|312868986|ref|ZP_07729164.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
 gi|311095489|gb|EFQ53755.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
          Length = 186

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+ +  +   ++ +   L   M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRKRAAKVSFPLSDEDQELAKKMMEYLEVSQDPELCEKYKLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103
            Q+GV  ++  + +        P             +   Y      +       D    
Sbjct: 64  PQVGVSKQMAAVLVPATEEGGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           V R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++ K
Sbjct: 124 VPRHDRITLRYQDTNGEKHQVRLKNYPAIVCQHEIDHLHGMLFYDHINKQK 174


>gi|325684372|gb|EGD26541.1| peptide deformylase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 207

 Score = 87.9 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++ +   ++     L D+M+E                  G+GLAA
Sbjct: 27  MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 86

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G    +  + + D               I             +            V 
Sbjct: 87  PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVP 146

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 147 RPNKVTVHYWTADGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 194


>gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase From Staphylococcus
           Aureus At 1.45 A
 gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase From Staphylococcus
           Aureus At 1.45 A
          Length = 194

 Score = 87.9 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++               GLA
Sbjct: 14  TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 73

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + + D    K+    +    I        Y    +       +    V
Sbjct: 74  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 133

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 134 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 181


>gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
 gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
          Length = 236

 Score = 87.9 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 25/170 (14%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ ++ +      + ++  L+  M++VM     +GLAA QIG+  R++V++ +
Sbjct: 42  QVGDPVLRQKAQLVPPEAVTSPEVRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFK 101

Query: 65  DH----------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           D                             +V INP++   + +   + E C S+  + A
Sbjct: 102 DKLRDEYTSAEYKIKEMDTLPLTVGRPTFMVVLINPELKVTNYEKKSFTEACASVKGFSA 161

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +V R + + +  +D N + + +   G  A   QHE+DHL+G+++ D + R
Sbjct: 162 EVPRYSEVLLSGLDENGKSKELTLKGWNARIAQHEMDHLDGVIYTDVMDR 211


>gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 171

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 9   FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61
             DP L R+++P+ + +   +  L+ ++L+ M++ +G GLAA QIG   ++VV       
Sbjct: 1   MGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPN 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                A      V INP I    ++  +  EGCLS+P  RA V R   +     D     
Sbjct: 61  PRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGDP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                +G  A  +QHE DHL G L+   +    R
Sbjct: 121 IDRTVEGFHARVVQHECDHLWGKLYPMRVRDFSR 154


>gi|161507335|ref|YP_001577289.1| peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|172048229|sp|A8YUR0|DEF_LACH4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160348324|gb|ABX26998.1| Peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|328468535|gb|EGF39537.1| peptide deformylase [Lactobacillus helveticus MTCC 5463]
          Length = 184

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L ++M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D               I             +            V 
Sbjct: 64  PQVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++ +
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKE 172


>gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 214

 Score = 87.5 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   DP+LR  + P E    + +           M    G+GLAA QIGV  RL V+
Sbjct: 24  LPIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVL 83

Query: 62  DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +                     V +NP      +  + + EGCLS+P ++A V R A + 
Sbjct: 84  EDPATVPEEVRRVREREPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVR 143

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +R  D +         G  A  +QHE DHL+G L++D 
Sbjct: 144 LRAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDR 181


>gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis]
 gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis]
          Length = 240

 Score = 87.5 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +  +      + D   +++ ++ V+ +   +G++A Q+GV  R++ +   + 
Sbjct: 68  GDPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQ 127

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +  P               +FINP++   +     + EGC S+  + A V R   + +
Sbjct: 128 MCQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAVVPRYYAVEI 187

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++   +H    A G  A  +QHE+DHL+G+L+ID +  
Sbjct: 188 SGLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKMDP 227


>gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis]
 gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis]
          Length = 234

 Score = 87.5 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  +      + ++  ++D M+ V+   D +G+AA QIG+  R++ ++ +
Sbjct: 49  QIGDPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFR 108

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                                  V INPK+   +     + EGC+S+  Y A+V+R   +
Sbjct: 109 RSIKQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKHPEGCMSVRGYSAEVERYEGV 168

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  ++    H  +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 169 KLSGVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHMDR 210


>gi|259503065|ref|ZP_05745967.1| peptide deformylase [Lactobacillus antri DSM 16041]
 gi|259168931|gb|EEW53426.1| peptide deformylase [Lactobacillus antri DSM 16041]
          Length = 196

 Score = 87.5 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+ +  +   ++ +   L   M+E                  G+GLAA
Sbjct: 14  MKDIVRDGDPVLRKRAAKVSFPLSDEDQTLAKKMMEYLEVSQDPQLCEKYKLRAGVGLAA 73

Query: 50  VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103
            Q+GV  ++  +     ++    +   V INP I++ S  +   +  +       D    
Sbjct: 74  PQVGVSKQMAAVLVPATEEDGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 133

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 134 VPRHDRITLRYQDTNGEQHQVRLKNYPAIVCQHEIDHLHGMLFYDHINK 182


>gi|51247225|pdb|1Q1Y|A Chain A, Crystal Structures Of Peptide Deformylase From
           Staphylococcus Aureus Complexed With Actinonin
          Length = 191

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + + D    K+    +    I        Y    +       +    V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|242242396|ref|ZP_04796841.1| peptide deformylase [Staphylococcus epidermidis W23144]
 gi|242234152|gb|EES36464.1| peptide deformylase [Staphylococcus epidermidis W23144]
          Length = 183

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++               GLA
Sbjct: 3   TMKNIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI    R++ + L D  + K+    +    I        Y    +       +    V
Sbjct: 63  APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169


>gi|319401586|gb|EFV89796.1| peptide deformylase [Staphylococcus epidermidis FRI909]
          Length = 183

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI    R++ + L D  + K+    +    I        Y    +       +    V
Sbjct: 63  APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169


>gi|300811352|ref|ZP_07091849.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123463|ref|YP_004033722.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|300497716|gb|EFK32741.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280026|gb|ADQ60745.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 184

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++ +   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G    +  + + D               I             +            V 
Sbjct: 64  PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 124 RPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|253731702|ref|ZP_04865867.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733674|ref|ZP_04867839.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|297208271|ref|ZP_06924701.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297591467|ref|ZP_06950105.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912348|ref|ZP_07129791.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381351|ref|ZP_07364004.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|253724516|gb|EES93245.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728374|gb|EES97103.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|296887010|gb|EFH25913.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297576353|gb|EFH95069.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886594|gb|EFK81796.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304340334|gb|EFM06275.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438532|gb|ADQ77603.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141093|gb|EFW32940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143150|gb|EFW34940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 207

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++               GLA
Sbjct: 27  TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 86

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + + D    K+    +    I        Y    +       +    V
Sbjct: 87  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 146

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 147 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 194


>gi|227544835|ref|ZP_03974884.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|227185182|gb|EEI65253.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
          Length = 183

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +    +P+LR+ +  +   ++ +   L  +M+            E      G+GLAA
Sbjct: 1   MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAA 60

Query: 50  VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103
            Q+GV  ++  +      +        V INP I++ S  +   +  +       D    
Sbjct: 61  PQVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 121 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 169


>gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri]
 gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri]
          Length = 243

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 6/160 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +V    P LR  ++ I+     +++I  LI  M+ VM    G+GLAA Q+G+  R++V
Sbjct: 34  RDVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMR-ARGVGLAAPQLGIRKRVIV 92

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA--FITVRYMDCN 118
           ++  +     +    +  +         +       + D  A            R     
Sbjct: 93  LEDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRACAAT 152

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
               I  A G  A  LQHELDHL+G+L+ D +       +
Sbjct: 153 GNRSIYIATGWQARILQHELDHLDGVLYTDRMESRTFRRV 192


>gi|325125510|gb|ADY84840.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 184

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++ +   ++     L D+M+E              +   G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHHLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G    +  + + D               I             +            V 
Sbjct: 64  PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 124 RPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|326692674|ref|ZP_08229679.1| peptide deformylase [Leuconostoc argentinum KCTC 3773]
          Length = 192

 Score = 87.1 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +    +P+LR+V+  +   ++ +   L ++M+            E      
Sbjct: 1   MTIRFTMDKITRDGEPVLRQVAEKVPFPLSEEHAQLAEDMMTYLVISQDEEQNEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQEGC 94
           G+GLAA Q+G   ++  +        +  A         NP II+         V +   
Sbjct: 61  GVGLAAPQVGESLQMAAVLIPSQDPHERDAEPYFKGTIFNPVIISESVKRAALDVGEGCL 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               D    V R+  ITVRY +   + + +      A   QHE+DHL+G L+ DH++
Sbjct: 121 SVDEDVPGFVPRANRITVRYQNEQGETKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|104773846|ref|YP_618826.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|122983972|sp|Q1GAR4|DEF_LACDA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|103422927|emb|CAI97589.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 184

 Score = 87.1 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++ +   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G    +  + + D               I             +            V 
Sbjct: 64  PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 124 RPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|329667535|gb|AEB93483.1| peptide deformylase [Lactobacillus johnsonii DPC 6026]
          Length = 181

 Score = 87.1 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +    +P+LR+V++P+   ++ +   L D+M+            E      G+GLAA Q
Sbjct: 3   DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKII----TFSDDFSVYQEGCLSIPDYRADVKRS 107
           +G   ++  + + +               I          +  +       D    V R 
Sbjct: 63  VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 122

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + +RY   + + + I      A    HE+DHLNG LF D +++
Sbjct: 123 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 167


>gi|227893361|ref|ZP_04011166.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
 gi|227864776|gb|EEJ72197.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
          Length = 184

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++P+   ++     L  +M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAKPLTFPLSDHYKKLAKDMMEYLINSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D   +           I             +            V 
Sbjct: 64  PQVGESVQMAALLVPDDEGKIIFKETYVNPEIISESVRQACLSEGEGCLSVDKVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|313239303|emb|CBY14251.1| unnamed protein product [Oikopleura dioica]
          Length = 165

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +   DP LR +S+ +E  +  +  +++ M  V    D +GLAA QIG+  R++++ LQ+ 
Sbjct: 18  LQIGDPKLREISKKVENYDD-LGKIVEEMKSVARKYDALGLAAPQIGINQRIILLTLQNG 76

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             +      I  K           +          +  +  +     +     +      
Sbjct: 77  KEKIFVNPVIIGKSSKIVPSI---EGCLSVPALVASVPRHESIRLKAFDFGKGKEVTEDF 133

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               + CLQHE+DHLNGILF+D +   +++MI 
Sbjct: 134 KEEDSFCLQHEIDHLNGILFLDRVE--EKEMIK 164


>gi|223043863|ref|ZP_03613905.1| peptide deformylase [Staphylococcus capitis SK14]
 gi|222442767|gb|EEE48870.1| peptide deformylase [Staphylococcus capitis SK14]
          Length = 183

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++ +    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKDLSFPLSEEDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI V  R++ + L D  + K+    +    +        Y    +       +    V
Sbjct: 63  APQIDVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNG++F D++ 
Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169


>gi|194468417|ref|ZP_03074403.1| peptide deformylase [Lactobacillus reuteri 100-23]
 gi|194453270|gb|EDX42168.1| peptide deformylase [Lactobacillus reuteri 100-23]
          Length = 186

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +    +P+LR+ +  +   ++ +   L  +M+E                  G+GLAA
Sbjct: 4   MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMEYLEVSQDPELCEKYKLRAGVGLAA 63

Query: 50  VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103
            Q+GV  ++  +      +        V INP I++ S  +   +  +       D    
Sbjct: 64  PQVGVSKQMAAVLVPAPAEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 124 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|116334013|ref|YP_795540.1| peptide deformylase [Lactobacillus brevis ATCC 367]
 gi|122269303|sp|Q03QL3|DEF_LACBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116099360|gb|ABJ64509.1| peptide deformylase [Lactobacillus brevis ATCC 367]
          Length = 186

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49
            K +V   DP+LR+ +  +   ++ +   L  +++E +  +              +GLAA
Sbjct: 4   MKDIVRDGDPVLRQEAADVTFPLSEEDQQLAKDLMEYLVVSQDPEQCKKYGLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFS-----VYQEGCLSIPDYRAD 103
            Q+GV  ++  + +       K+P   +    +  S+          +       D    
Sbjct: 64  PQVGVSKKMASVLVPPVEEDGKSPFTDVIINPVIISESVQAGALTEGEGCLSVDKDVPGF 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   IT+RY D N +   +      A   QHE+DHL+G LF DH+++
Sbjct: 124 VPRHDRITLRYYDVNGEKHQVRLKNYPAIVCQHEIDHLHGTLFYDHINK 172


>gi|153955271|ref|YP_001396036.1| Def2 [Clostridium kluyveri DSM 555]
 gi|146348129|gb|EDK34665.1| Def2 [Clostridium kluyveri DSM 555]
          Length = 191

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K +V   + IL R +  +    + +    + +M+            +      G+GL+
Sbjct: 11  TMKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLS 70

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A QIG+  R+ V+   D   +++    INPKII+ S         +            V 
Sbjct: 71  ANQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVP 130

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   I V+  +   +  I+  +G  +  +QHE+DHLNGI+F + +++ 
Sbjct: 131 RYERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 178


>gi|222150958|ref|YP_002560111.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402]
 gi|254767593|sp|B9EB04|DEF_MACCJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222120080|dbj|BAH17415.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402]
          Length = 184

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 17/176 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  +  +   ++++   LID+MLE +  +               G+A
Sbjct: 3   TMKDIIRDGHPTLRAKAEEVPLPLSTEDRQLIDDMLEFLKMSQDEEQSRKYQLRSGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A Q+    R++VI   D          +    I        Y    +            V
Sbjct: 63  APQLNHKKRMLVIHFYDEKKGDYVTHQLINPKIISHSVEKSYLPTGEGCLSVDEAVPGIV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            R A ITV+    + +   +      A   QHE+DHLNG++F DH+ +     + K
Sbjct: 123 HRYARITVKAYTPDGEEVKLRLKDFSAIVAQHEIDHLNGVMFYDHIDKADPMKVQK 178


>gi|227535207|ref|ZP_03965256.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187091|gb|EEI67158.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 181

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +      +LR  ++P+   ++ +   L  +M+            E  +   G+GLAA
Sbjct: 1   MKDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVK 105
            Q+G    +  + +    +       +    I  +          +       D    V 
Sbjct: 61  PQVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVV 120

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R+  IT+ Y +   +H+ I      A   QHE+DHLNG+LF DH+++ 
Sbjct: 121 RADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 168


>gi|86140860|ref|ZP_01059419.1| putative polypeptide deformylase protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832802|gb|EAQ51251.1| putative polypeptide deformylase protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 219

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 5/161 (3%)

Query: 1   MVKKPLVIFPDPIL-RRVSRPIEKINSD--IMNLIDNMLEVMYSTDG--IGLAAVQIGVL 55
           M    +    D +L R  S  +     D  +MNLID M   +  +     G+AA Q+G+L
Sbjct: 47  MRVFKITKESDSLLLRTPSEAVTVDPKDTVLMNLIDRMYTTVRDSLSLGAGIAAPQVGIL 106

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+  +   D       ++                +              R+  I V Y 
Sbjct: 107 KRIAWVQRFDKEGFPFEVIINPVIKQYSKKKQDCPEGCLSIPGRRDTLSTRAYAILVEYD 166

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +A H+I   +   A   QHE+DHLNGIL++DHL +  +D
Sbjct: 167 KPDASHEIEMVEDFTAVVFQHEIDHLNGILYLDHLKQEIKD 207


>gi|300909945|ref|ZP_07127405.1| peptide deformylase [Lactobacillus reuteri SD2112]
 gi|300892593|gb|EFK85953.1| peptide deformylase [Lactobacillus reuteri SD2112]
          Length = 186

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +    +P+LR+ +  +   ++ +   L  +M+            E      G+GLAA
Sbjct: 4   MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAA 63

Query: 50  VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103
            Q+GV  ++  +      +        V INP I++ S  +   +  +       D    
Sbjct: 64  PQVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 124 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|228475040|ref|ZP_04059768.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|314936623|ref|ZP_07843970.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
 gi|228271025|gb|EEK12413.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|313655242|gb|EFS18987.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
          Length = 162

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    P+L + ++ I   + ++  L+ ++ + +YS +   L+A QIGV  R+ +
Sbjct: 1   MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  INPKI T S++  +  EG +++P+   +V+RS  ITV   D    
Sbjct: 61  I----DMEAEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGH 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D L+GI F +   ++
Sbjct: 117 EIELTAYDDVARMILHIIDQLDGIPFTERAIKI 149


>gi|27467707|ref|NP_764344.1| peptide deformylase [Staphylococcus epidermidis ATCC 12228]
 gi|57866596|ref|YP_188262.1| peptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251810544|ref|ZP_04825017.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876551|ref|ZP_06285416.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|32129485|sp|Q8CPN4|DEF_STAES RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81674995|sp|Q5HQ78|DEF_STAEQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637254|gb|AAW54042.1| peptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251805955|gb|EES58612.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294639|gb|EFA87168.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|329732863|gb|EGG69209.1| peptide deformylase [Staphylococcus epidermidis VCU144]
 gi|329734227|gb|EGG70543.1| peptide deformylase [Staphylococcus epidermidis VCU028]
 gi|329735535|gb|EGG71823.1| peptide deformylase [Staphylococcus epidermidis VCU045]
          Length = 183

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI    R++ + L D  + K+    +    I        Y    +       +    V
Sbjct: 63  APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169


>gi|109899738|ref|YP_662993.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109702019|gb|ABG41939.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M+   +    + ILR  ++ + + + +       +D +L  M   +G+G+AA Q+     
Sbjct: 1   MM--KIAQVGEVILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERA 58

Query: 58  LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +++I         +A    P+V INPK+I  S++     EGCLS+P  R  ++R+ ++ +
Sbjct: 59  VMIIASRPSPRYPNAPDMEPLVLINPKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEI 118

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y+  +        DG +A    HE DHL G  ++DH+ 
Sbjct: 119 EYLQRDGTPATQRLDGFVARIFLHEFDHLIGKTWLDHVE 157


>gi|219855695|ref|YP_002472817.1| hypothetical protein CKR_2352 [Clostridium kluyveri NBRC 12016]
 gi|219569419|dbj|BAH07403.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 180

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +V   + IL R +  +    + +    + +M+            +      G+GL+A
Sbjct: 1   MKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLSA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106
            QIG+  R+ V+   D   +++    INPKII+ S         +            V R
Sbjct: 61  NQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I V+  +   +  I+  +G  +  +QHE+DHLNGI+F + +++ 
Sbjct: 121 YERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 167


>gi|271969762|ref|YP_003343958.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021]
 gi|270512937|gb|ACZ91215.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021]
          Length = 174

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVID 62
           + L+  P P+L   +R ++  +  ++    ++L  M       GLAA QIG+ +RL+ +D
Sbjct: 10  RELIAAPHPVLTARARAVDPADPRVVVAAADLLATMRRARHCTGLAAPQIGLDWRLLSVD 69

Query: 63  L--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119
           +     A      + +    +  +  +   +EGCLS+P    DV R+  ITVR       
Sbjct: 70  VSLHPGARSCAGELVVANPRLVAASRWEPAREGCLSVPGLTGDVLRATRITVRGERPGTG 129

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               I AD   A C+QH+LDHL+G+LF+D ++R
Sbjct: 130 APVTIDADAFEARCIQHQLDHLDGVLFLDRVTR 162


>gi|326331194|ref|ZP_08197489.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325951015|gb|EGD43060.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 178

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61
              +V  P  +L    + ++    + + L  +++  M  +   +GLAA Q+GV  R+  +
Sbjct: 14  VLDVVRAPAHVLSVPGKDVDPAAPETVQLAADLIATMRVSPGCVGLAADQVGVSARIFCV 73

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYM-DCN 118
           D+  H   +              +     +  EGC+S+PD   DVKR++ + VR      
Sbjct: 74  DVSTHVKTRTHHGTYVLCNAEVVEASRNEKAREGCMSVPDLTGDVKRASRLKVRGQLPVT 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +   I  D   A CLQHE+DH NG+LFID +
Sbjct: 134 GETVEIVTDAFEARCLQHEIDHTNGLLFIDRV 165


>gi|42518919|ref|NP_964849.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|227889778|ref|ZP_04007583.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|268319683|ref|YP_003293339.1| peptide deformylase [Lactobacillus johnsonii FI9785]
 gi|81703847|sp|Q74JW2|DEF_LACJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|41583205|gb|AAS08815.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|227849642|gb|EEJ59728.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|262398058|emb|CAX67072.1| peptide deformylase [Lactobacillus johnsonii FI9785]
          Length = 184

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +    +P+LR+V++P+   ++ +   L D+M+            E      G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKII----TFSDDFSVYQEGCLSIPDYRADVKRS 107
           +G   ++  + + +               I          +  +       D    V R 
Sbjct: 66  VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + +RY   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|332172628|gb|AEE21882.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 183

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +    + IL ++++P+ +    +      +D +L  M + +G+G+AA Q+     +++I
Sbjct: 2   KIAQVGETILHQIAKPVAEEAIKSDAFQAFVDELLSTMQNANGVGIAAPQVFDERAVMII 61

Query: 62  -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                    +A    P+V INPK+I  + +     EGCLS+P  R  ++R++++ + Y  
Sbjct: 62  ASRPSSRYPNAPEMEPLVLINPKVIQSAQESVKDWEGCLSVPGLRGYIRRASWVEIAYQQ 121

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +         G +A    HE DHL G  ++DH+ 
Sbjct: 122 RDGSQVSTRLSGFVARIFLHEFDHLIGKTWLDHVE 156


>gi|330685497|gb|EGG97150.1| peptide deformylase [Staphylococcus epidermidis VCU121]
          Length = 162

 Score = 86.0 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PI  + + P+E  +  +   + ++ + +Y+ +G  L+A QIG+  ++ +
Sbjct: 1   MSVKKLVKSEHPIFNQPANPVEHFDDQLKQTLMDIEDSLYALEGSALSANQIGINQQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        +  +  INPKI   S++     EG +S+P+   +V+R+  I V   D N  
Sbjct: 61  V----DMEMEGLLQLINPKIKNQSEETITDLEGSVSLPNVFGEVERNKMIVVESNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + A   +A  + H +D LNGI F +   + KR +  ++M 
Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTE---KAKRILSEEEME 156


>gi|187777978|ref|ZP_02994451.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC
           15579]
 gi|187774906|gb|EDU38708.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC
           15579]
          Length = 166

 Score = 86.0 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGI-----GLAAVQIGV 54
           M  K +++  D IL R+S  I+K N      +I+++ + + S          +AA QIG 
Sbjct: 1   MPTKSILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L           FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGYKT-----HYFINPVLEFIGDDTFQLWDDCMSFPGLEVYVERYKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|314933288|ref|ZP_07840653.1| peptide deformylase [Staphylococcus caprae C87]
 gi|313653438|gb|EFS17195.1| peptide deformylase [Staphylococcus caprae C87]
          Length = 183

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K ++    P LR  ++ +   ++ +    + +M E + ++               GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKELSFPLSEEDKETLRSMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R++ + L D  + K+    +    +        Y    +       +    V
Sbjct: 63  APQIDLAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNG++F D++ 
Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169


>gi|116494793|ref|YP_806527.1| peptide deformylase [Lactobacillus casei ATCC 334]
 gi|191638306|ref|YP_001987472.1| peptide deformylase [Lactobacillus casei BL23]
 gi|239631609|ref|ZP_04674640.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066358|ref|YP_003788381.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang]
 gi|122263789|sp|Q039N7|DEF_LACC3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693032|sp|B3WE13|DEF_LACCB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116104943|gb|ABJ70085.1| peptide deformylase [Lactobacillus casei ATCC 334]
 gi|190712608|emb|CAQ66614.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus
           casei BL23]
 gi|239526074|gb|EEQ65075.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438765|gb|ADK18531.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang]
 gi|327382333|gb|AEA53809.1| Peptide deformylase [Lactobacillus casei LC2W]
 gi|327385534|gb|AEA57008.1| Peptide deformylase [Lactobacillus casei BD-II]
          Length = 184

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +      +LR  ++P+   ++ +   L  +M+            E  +   G+GLAA
Sbjct: 4   MKDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVK 105
            Q+G    +  + +    +       +    I  +          +       D    V 
Sbjct: 64  PQVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVV 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R+  IT+ Y +   +H+ I      A   QHE+DHLNG+LF DH+++ 
Sbjct: 124 RADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171


>gi|323341737|ref|ZP_08081970.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464162|gb|EFY09355.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 190

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 21/179 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52
           +V+ P+P+LR    P+   ++ +  N ++NML            E        G+AA QI
Sbjct: 9   IVLDPNPVLREKCEPVSFPLSEEDRNTLENMLQYVRDSRDPELAEKYNLQPANGIAAPQI 68

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK------- 105
           GV  ++  + +       N        +       SV Q          +  K       
Sbjct: 69  GVAKQMTALVVDLEDKHGNVKTVEYALVNPKIVSNSVKQCALSYGEGCLSIRKDYPGLVR 128

Query: 106 -RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                  + Y     Q   I A  +LA  LQHE+DHLNG+LF DH+      M  K + 
Sbjct: 129 RSQRIKVLAYDMITDQRIEIVAKDILAIVLQHEIDHLNGVLFYDHIDSKDPWMAEKGLK 187


>gi|241896030|ref|ZP_04783326.1| peptide deformylase [Weissella paramesenteroides ATCC 33313]
 gi|241870761|gb|EER74512.1| peptide deformylase [Weissella paramesenteroides ATCC 33313]
          Length = 195

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 28/178 (15%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +V   D +LR  +  +E  ++ ++     NM+E                  G+GLAA Q
Sbjct: 6   EIVRDGDKVLRERAAKVEFPLSDEVKEASKNMMEYLVVSQDEKENEKYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDL--------QDHAHRKNPMVFINPKIITFSDDFS-------VYQEGCLS 96
           +G+  +   I +        QD     +   F            S       + +     
Sbjct: 66  VGISQQFTSILIPSDDVEELQDKKTTDSDYFFKGTIYNPVITRQSVKKGALSMGEGCLSV 125

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             D    V RS  ITV++ D N   Q +  +G  A   QHE+DHL+G L+ DH+++ +
Sbjct: 126 DNDLPGYVARSYRITVKFQDENGDKQELRLEGYPAIVFQHEIDHLHGTLYYDHINKTE 183


>gi|116513853|ref|YP_812759.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122275377|sp|Q04B51|DEF_LACDB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116093168|gb|ABJ58321.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 184

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LR+V++ +   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G    +  + + D               I             +            V 
Sbjct: 64  PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 124 RPNKVTVHYWTVDGEEKAIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|227431846|ref|ZP_03913870.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352388|gb|EEJ42590.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 192

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTD 43
           M  +     +    DP+LR+ +  +   ++ +   L  +M+E                  
Sbjct: 1   MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGC 94
           G+GLAA Q+G   R+  ++I   D     +   F            SV        +   
Sbjct: 61  GVGLAAPQVGYSLRMSSILIPALDPEDTTDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               D    V R+  ITVRY D +   Q I      A   QHE+DHL+G L+ DH++
Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|293366921|ref|ZP_06613596.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318896|gb|EFE59267.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 180

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAA 49
            K ++    P LR  ++ +   ++++    +  M E + ++               GLAA
Sbjct: 1   MKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            QI    R++ + L D  + K+    +    I        Y    +       +    V 
Sbjct: 61  PQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLVH 120

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 121 RHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 166


>gi|241888581|ref|ZP_04775888.1| peptide deformylase [Gemella haemolysans ATCC 10379]
 gi|241864604|gb|EER68979.1| peptide deformylase [Gemella haemolysans ATCC 10379]
          Length = 184

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR  +  +   I+ +   ++  +LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRAD 103
           A QI V  R++ + + D    ++ + +                 +  +       D +  
Sbjct: 63  APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSATKCYLAGGEGCLSVDKDIKGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   + N +   +    L A C QHE+DHLNG++F DH+++     +  +  
Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182

Query: 164 KL 165
           KL
Sbjct: 183 KL 184


>gi|299822499|ref|ZP_07054385.1| peptide deformylase [Listeria grayi DSM 20601]
 gi|299816028|gb|EFI83266.1| peptide deformylase [Listeria grayi DSM 20601]
          Length = 182

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V    P LR+V+  +   ++ +   L   ML            E      G+GLAA Q
Sbjct: 6   DIVREGHPALRKVADEVTFPLSQEEKELGREMLTFLKNSQDEEIAEKYGLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109
           + VL R++ I ++D     +  ++          +      +       +    V R   
Sbjct: 66  LAVLKRIIAIHIEDEDRTYSYTLYNPKIRSHSVQEACLAGGEGCLSVDREVPGFVVRKER 125

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +T+   D +     +      A  +QHE+DHLNG++F DH++ 
Sbjct: 126 VTIEAFDEDGNPIKLRLKSYPAIVVQHEIDHLNGVMFYDHIND 168


>gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 173

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 7/153 (4%)

Query: 8   IFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61
              DP L R+++P+ + +   +  L+ ++L+ M++ +G GLAA QIG   ++VV      
Sbjct: 2   KMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEP 61

Query: 62  -DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A      V INP I    ++  +  EGCLS+P  RA V R   +     D    
Sbjct: 62  NPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGD 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                 DG  A  +QHE DHL G L+   +   
Sbjct: 122 PIDRTVDGFHARVVQHECDHLWGKLYPMRVRDF 154


>gi|329767966|ref|ZP_08259477.1| peptide deformylase 2 [Gemella haemolysans M341]
 gi|328838451|gb|EGF88059.1| peptide deformylase 2 [Gemella haemolysans M341]
          Length = 184

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR  +  +   I+ +   ++  +LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRAD 103
           A QI V  R++ + + D    ++ + +                 +  +       + +  
Sbjct: 63  APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSAAKCYLAGGEGCLSVDKEIKGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   + N +   +    L A C QHE+DHLNG++F DH+++     +  +  
Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182

Query: 164 KL 165
           KL
Sbjct: 183 KL 184


>gi|227509423|ref|ZP_03939472.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191135|gb|EEI71202.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 188

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +V   DP+LR+ ++ ++  +++D   L  +++E                  G+GLAA Q
Sbjct: 6   DIVRDGDPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYRAD 103
           +GV   +  + + +    +         II              +  +       D    
Sbjct: 66  VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156
           V RSA IT++Y D +     I      A   QHE+DHL+GILF DH+++    KRD
Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181


>gi|170744220|ref|YP_001772875.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168198494|gb|ACA20441.1| formylmethionine deformylase [Methylobacterium sp. 4-46]
          Length = 165

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 3/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   PL+ +PD  LRR   P    +  +     ++ E + +   IGL    +G   RL V
Sbjct: 1   MAILPLLRYPDACLRRAVPPAALPDPRVAAFAADLAETLDAHRAIGLTGPHVGASIRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L         M  +NP+++  S + + ++EG +++P    +V+R A + VRY D +  
Sbjct: 61  IRLGP---GAPLMTCVNPQVVHASPETARHREGSVAMPGVDEEVERPARVRVRYQDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+G LA CLQHE+D L+G+ + +
Sbjct: 118 AREVEAEGFLAACLQHEIDQLDGVFWTE 145


>gi|84060919|ref|YP_444131.1| hypothetical protein O2ColV76 [Escherichia coli]
 gi|3288155|emb|CAA11508.1| hypothetical protein [Escherichia coli]
 gi|76781994|gb|AAX22071.2| conserved hypothetical protein [Escherichia coli]
          Length = 149

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY  + IGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMY-AESIGLAATQVDIHQRIIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 60  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 116

Query: 121 HQIIYADGLLATCL 134
              + ADGLLA C+
Sbjct: 117 PFELEADGLLAICI 130


>gi|256846996|ref|ZP_05552442.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715660|gb|EEU30635.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 186

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49
            K +V   DP+LR+ +  +   +  D       ++E +  +              +GLAA
Sbjct: 4   MKDIVRDGDPVLRQRAAKVSFPLTDDEREFAHQLMEYLEVSQDPELCKKYGLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103
            Q+GV  ++  + +        P             +   Y      +       D    
Sbjct: 64  PQVGVSKQMASVLVPADEEGGKPQFKDVIINPVIISESVQYGVLTEGEGCLSVDKDIPGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           V R   IT++Y D + +   I      A   QHE+DHL+G+LF DH+++ 
Sbjct: 124 VPRHDRITLKYQDVDGETHQIRLKHYPAIVCQHEIDHLHGVLFYDHINKE 173


>gi|227538920|ref|ZP_03968969.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241123|gb|EEI91138.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 432

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           M    +    D  IL+  S+ I+  +  +  L   M   +      G+G+AA Q+G+   
Sbjct: 255 MYVLQVTKTNDLAILKATSQDIKYDDPLLELLSQRMYATVNDPDHSGVGIAAPQVGINKN 314

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            + +   D           NPKII  S       EGCLSIP  + DV RS  I ++Y++ 
Sbjct: 315 AIWVQRFDKKDTPFEFYV-NPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVNK 373

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                    +G  A   QHE+DHL GILF D L 
Sbjct: 374 TGDIIEENIEGFTAVIFQHEVDHLYGILFTDRLE 407


>gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase,
           putative [Tribolium castaneum]
 gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum]
          Length = 223

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP LR VS  I +      +I  LI+ M  VM + + +GL+A Q+GV  +L +++
Sbjct: 35  VVQIGDPTLRTVSDVIPRDLIKLPEIKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLVE 94

Query: 63  LQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                                    V INP+I         + E C S+  + A+V R  
Sbjct: 95  CNAKHLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTFVESCASVKGFHAEVPRYK 154

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +   D   Q   +   G  A  +QHE+DHLNG ++ D + R
Sbjct: 155 SLKLEAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDR 198


>gi|310644037|ref|YP_003948795.1| peptide deformylase 2 [Paenibacillus polymyxa SC2]
 gi|309248987|gb|ADO58554.1| Peptide deformylase 2 [Paenibacillus polymyxa SC2]
          Length = 188

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   +PILR+   P+   ++ + +  +  ML+ + ++             G+GL+A 
Sbjct: 7   KDIVREGEPILRKKVDPVCLPLSEEDLQQMQWMLDYLKNSQNEELATRYELRPGVGLSAN 66

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPDYRADVKRSA 108
           Q+G+  R+  I  +D        +F    +   T        +            V R  
Sbjct: 67  QVGLNKRMCAIYYEDGDQTVEYALFNPKLVSHSTSMIYLEQGEGCLSVDRYIPGYVPRYE 126

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I ++    +   +++   G  A  +QHE+DHL+GI+F D ++  
Sbjct: 127 KIRIKANLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 171


>gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
          Length = 249

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 28/179 (15%)

Query: 2   VKKPL-----------VIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGL 47
           +K+ +               +P+LR  +  ++        +  +I  M++VM   + +GL
Sbjct: 58  MKRKIKPPPSPPYPHVCQVGEPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGL 117

Query: 48  AAVQIGVLYRLVVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEG 93
           +A Q+GV  R++ ++  +                      +FINP++        ++QE 
Sbjct: 118 SAPQVGVPLRILALEFPERMLEDSLPAAREARGLTAVPLRIFINPQLRVLDGRTVLFQEA 177

Query: 94  CLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           C SI  + A V R   + V  ++  A+       G  A  LQHE+DHL+G+L+ID +  
Sbjct: 178 CESISGFSATVPRYLSVEVSGLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRMDS 236


>gi|116618440|ref|YP_818811.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097287|gb|ABJ62438.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 192

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTD 43
           M  +     +    DP+LR+ +  +   ++ +   L  +M+E                  
Sbjct: 1   MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGC 94
           G+GLAA Q+G   R+  ++I   D     +   F            SV        +   
Sbjct: 61  GVGLAAPQVGYSLRMSSILIPALDPEDTIDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               D    V R+  ITVRY D +   Q I      A   QHE+DHL+G L+ DH++
Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|23098865|ref|NP_692331.1| peptide deformylase [Oceanobacillus iheyensis HTE831]
 gi|32363150|sp|Q8ER96|DEF_OCEIH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22777092|dbj|BAC13366.1| formylmethionine deformylase [Oceanobacillus iheyensis HTE831]
          Length = 183

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K +V    P L R +  +E  ++ D   L+++M+            E      G+G+A
Sbjct: 3   TMKDIVREGHPSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105
           A Q+G+  +++ I  +D   +   M  +NPKII+ S + S     +            V 
Sbjct: 63  APQLGIEKQIIAIHFEDIDGKLYSMGLVNPKIISHSVEQSYLSSGEGCLSVDRPVEGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A IT++  D N Q   +   G  A   QHE+DH+NGI+F D ++
Sbjct: 123 RHARITIKATDINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRIN 168


>gi|118780782|ref|XP_310421.3| AGAP003861-PA [Anopheles gambiae str. PEST]
 gi|116131029|gb|EAA06035.3| AGAP003861-PA [Anopheles gambiae str. PEST]
          Length = 241

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  +  I +    ++++  L  ++ +VM +   +GLAA Q+G+  R  V++
Sbjct: 53  IVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVME 112

Query: 63  LQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            +D                      + +NP++   + +  ++ E C S+  YRADV R  
Sbjct: 113 FKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRYR 172

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I ++  D     Q +   G  A   QHE+DHLNGI++ D ++R
Sbjct: 173 EILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 216


>gi|227512180|ref|ZP_03942229.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
 gi|227084574|gb|EEI19886.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
          Length = 185

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +V   DP+LR+ ++ ++  +++D   L  N++E                  G+GLAA Q
Sbjct: 3   DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYRAD 103
           +GV   +  + + +    +         II              +  +       D    
Sbjct: 63  VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156
           V RSA IT++Y D +     I      A   QHE+DHL+GILF DH+++    KRD
Sbjct: 123 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 178


>gi|220702375|pdb|3CMD|A Chain A, Crystal Structure Of Peptide Deformylase From
           Vre-E.Faecium
 gi|220702376|pdb|3CMD|B Chain B, Crystal Structure Of Peptide Deformylase From
           Vre-E.Faecium
          Length = 196

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 1   MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45
           M+     ++   +P LR V++ +   ++ + ++L   MLE + ++             G+
Sbjct: 9   MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 68

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
           GLAA Q+ +  R++ + +       +                SV        +       
Sbjct: 69  GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 128

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 129 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 182


>gi|254994774|ref|ZP_05276964.1| Peptide deformylase [Anaplasma marginale str. Mississippi]
 gi|255002896|ref|ZP_05277860.1| Peptide deformylase [Anaplasma marginale str. Puerto Rico]
 gi|255004027|ref|ZP_05278828.1| Peptide deformylase [Anaplasma marginale str. Virginia]
          Length = 195

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63
           +L+  S PIEK++ +++ L+D M +V+ ++  +G +A+Q+GV  R+  I++         
Sbjct: 14  VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                      +  N +      +    +   +++    +       + R   + ++Y D
Sbjct: 74  DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGIL 145
                 +I A   LA C+QHE+DHLNG+L
Sbjct: 134 LMGNECVIRAYNWLARCIQHEMDHLNGVL 162


>gi|56416555|ref|YP_153629.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries]
 gi|222474923|ref|YP_002563338.1| Peptide deformylase [Anaplasma marginale str. Florida]
 gi|56387787|gb|AAV86374.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries]
 gi|222419059|gb|ACM49082.1| Peptide deformylase [Anaplasma marginale str. Florida]
          Length = 196

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63
           +L+  S PIEK++ +++ L+D M +V+ ++  +G +A+Q+GV  R+  I++         
Sbjct: 15  VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 74

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                      +  N +      +    +   +++    +       + R   + ++Y D
Sbjct: 75  DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 134

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGIL 145
                 +I A   LA C+QHE+DHLNG+L
Sbjct: 135 LMGNECVIRAYNWLARCIQHEMDHLNGVL 163


>gi|199598173|ref|ZP_03211595.1| peptide deformylase [Lactobacillus rhamnosus HN001]
 gi|229552108|ref|ZP_04440833.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1]
 gi|258508310|ref|YP_003171061.1| peptide deformylase [Lactobacillus rhamnosus GG]
 gi|258539523|ref|YP_003174022.1| peptide deformylase [Lactobacillus rhamnosus Lc 705]
 gi|199590934|gb|EDY99018.1| peptide deformylase [Lactobacillus rhamnosus HN001]
 gi|229314541|gb|EEN80514.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1]
 gi|257148237|emb|CAR87210.1| Peptide deformylase [Lactobacillus rhamnosus GG]
 gi|257151199|emb|CAR90171.1| Peptide deformylase [Lactobacillus rhamnosus Lc 705]
 gi|259649627|dbj|BAI41789.1| peptide deformylase [Lactobacillus rhamnosus GG]
 gi|328462751|gb|EGF34641.1| peptide deformylase [Lactobacillus rhamnosus MTCC 5462]
          Length = 184

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +      +LR  ++P+   ++ +   L  +M+            E  +   G+GLAA
Sbjct: 4   MKDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVK 105
            Q+G    +  + +            +    I  +          +       D    V 
Sbjct: 64  PQVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVV 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R+  IT+ Y +   +H+ +      A   QHE+DHLNG+LF DH+++ 
Sbjct: 124 RADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171


>gi|148543862|ref|YP_001271232.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|184153262|ref|YP_001841603.1| peptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227364768|ref|ZP_03848817.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|325682605|ref|ZP_08162122.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
 gi|167012064|sp|A5VJ71|DEF_LACRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487489|sp|B2G6P1|DEF_LACRJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148530896|gb|ABQ82895.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|183224606|dbj|BAG25123.1| N-formylmethionyl-tRNA deformylase [Lactobacillus reuteri JCM 1112]
 gi|227070227|gb|EEI08601.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|324978444|gb|EGC15394.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
          Length = 186

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +    +P+LR+ +  +   ++ +   L  +M++                  G+GLAA
Sbjct: 4   MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMKYLEVSQDPELCKKYKLRAGVGLAA 63

Query: 50  VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103
            Q+GV  ++  +      +        V INP I++ S  +   +  +       D    
Sbjct: 64  PQVGVSKQMAAVLVPAPDEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 124 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|71894044|ref|YP_278152.1| putative polypeptide deformylase [Mycoplasma synoviae 53]
          Length = 186

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55
            +V  PD ILR  S+ +E  ++ + + L + M+  +  +         G+G+AA+Q G+ 
Sbjct: 8   KIVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQ 67

Query: 56  YRLVVIDLQDHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
             +  + L  + +         NP+V    KI+T              IP+    V RS 
Sbjct: 68  KNVFYVKLTQNDNSVVFDDVLFNPIVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 127

Query: 109 FITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+      Q     +  G LA   QHELDHLNG LFID +++
Sbjct: 128 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 172


>gi|170017441|ref|YP_001728360.1| peptide deformylase [Leuconostoc citreum KM20]
 gi|169804298|gb|ACA82916.1| peptide deformylase [Leuconostoc citreum KM20]
          Length = 195

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 29/180 (16%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +    DP+LR+VS  +   ++ +   L  +M+            E      
Sbjct: 1   MTIRFTMDKITRDGDPVLRQVSTAVPFPLSEEHAQLAQDMMTYLVVSQDEEENEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQ 91
           G+GLAA Q+G   ++  I           +            NP II+        +V +
Sbjct: 61  GVGLAAPQVGYSLQMTSILIPALETHEQDEQDDKPYFKGTIFNPVIISESVKRSALNVGE 120

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  D    V R+  ITVRY D     + +      A   QHE+DHL+G L+ DH++
Sbjct: 121 GCLSVDEDVPGFVPRANRITVRYQDETGATKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 180


>gi|224476324|ref|YP_002633930.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420931|emb|CAL27745.1| putative polypeptide deformylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 162

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV      LR+ +  ++K +  +  L+ ++ + +Y T+   L+A QIGV  +  +
Sbjct: 1   MAVKQLVPANSSKLRKPAAEVKKFDDSLKKLLLDIEDTLYDTEASALSAPQIGVSLQAAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +  INP II  SD+     EG +S PD    V RS  I V+  D +  
Sbjct: 61  I----DMEAEGLLQLINPTIIRQSDETVTDLEGSISFPDVFGTVTRSQMIVVQSYDLHGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + A   +A  + H +D L GI F + +   ++ +  +++ 
Sbjct: 117 KVELTAYDDVARMILHIVDQLKGIPFTEKM---EKQLTEEELE 156


>gi|260583921|ref|ZP_05851669.1| peptide deformylase [Granulicatella elegans ATCC 700633]
 gi|260158547|gb|EEW93615.1| peptide deformylase [Granulicatella elegans ATCC 700633]
          Length = 185

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 18/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48
             K +V+   P LR+ +  I   ++ D+ +L   MLE ++++               GLA
Sbjct: 3   TMKDIVLEGHPALRKRAGKISFPLSDDLQHLAKEMLEFLHNSQDEEIAAKYELRAGVGLA 62

Query: 49  AVQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIIT--FSDDFSVYQEGCLSIPDYRAD 103
           A Q+G   +++ +     +D     + +      +            +       D    
Sbjct: 63  APQLGKEIQMIALLIPGYEDEPALLDEVWINPRILRESVKKTCLKEGEGCLSVNRDVPGV 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   ITV+Y     + ++       A  +QHE+DHLNG++F DH++
Sbjct: 123 VLRPQRITVKYFTPEGEEKVKTLTDYEAIVVQHEIDHLNGVMFYDHIN 170


>gi|144574929|gb|AAZ43441.2| putative polypeptide deformylase [Mycoplasma synoviae 53]
          Length = 189

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55
            +V  PD ILR  S+ +E  ++ + + L + M+  +  +         G+G+AA+Q G+ 
Sbjct: 11  KIVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQ 70

Query: 56  YRLVVIDLQDHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
             +  + L  + +         NP+V    KI+T              IP+    V RS 
Sbjct: 71  KNVFYVKLTQNDNSVVFDDVLFNPIVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 130

Query: 109 FITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+      Q     +  G LA   QHELDHLNG LFID +++
Sbjct: 131 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 175


>gi|227524090|ref|ZP_03954139.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
 gi|227088721|gb|EEI24033.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
          Length = 188

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +V   DP+LR+ ++ ++  +++D   L  N++E                  G+GLAA Q
Sbjct: 6   DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYRAD 103
           +GV   +  + + +    +         II              +  +       D    
Sbjct: 66  VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156
           V RSA IT++Y D +     I      A   QHE+DHL+GILF DH+++    KRD
Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181


>gi|295099934|emb|CBK89023.1| peptide deformylase [Eubacterium cylindroides T2-87]
          Length = 184

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +++  DP +R+ SR +E  +N +   L++ +LE + ++              +G+AA+Q+
Sbjct: 8   IILDTDPRIRQKSRKVELPLNQEDKELLEALLEYVRNSTDEEIAERDNLEPAVGIAAIQV 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
           GV  +L+ + + D       +   NPKII+ S   +     +        +   V R A 
Sbjct: 68  GVPKKLIAVVVPDEEGNVQEVALANPKIISESVQNAYLDNGEGCLSVKEVHEGHVFRHAR 127

Query: 110 ITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           I VR  D     +  I A+G  A  LQHE+DHL+GILF D + +
Sbjct: 128 IKVRGYDLIKDDNVTISAEGYFAIALQHEIDHLSGILFYDRIDK 171


>gi|256850954|ref|ZP_05556343.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661168|ref|ZP_05862082.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934131|ref|ZP_06339409.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|297205836|ref|ZP_06923231.1| peptide deformylase [Lactobacillus jensenii JV-V16]
 gi|256616016|gb|EEU21204.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548105|gb|EEX24081.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301745|gb|EFA94011.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|297148962|gb|EFH29260.1| peptide deformylase [Lactobacillus jensenii JV-V16]
          Length = 184

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LRRV+  +   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + +               I       V     +            V 
Sbjct: 64  PQVGEGVQMASLLVPNDKGEIIFKETFVNPKIISESVRQVCLSEGEGCLSVDKVIDGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T++Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 124 RPNKLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINK 170


>gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi]
 gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi]
          Length = 234

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
              DP+LR  +  +      + +I  ++D M+ V+   D +G+AA QIGV  R++ +   
Sbjct: 49  QIGDPVLRDRAAEVPADCVNSKEIHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFR 108

Query: 62  -----------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                        +         V INP++   +     + EGC+S+  + A+V+R   +
Sbjct: 109 RSIKKDLSDATYKRRQMSELPLTVLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGV 168

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +D    H  +   G  A   QHE++HL+G L+ DH+ R
Sbjct: 169 KLSGLDRQGVHSELELSGWNARIAQHEMEHLDGKLYTDHMDR 210


>gi|229544091|ref|ZP_04433150.1| peptide deformylase [Bacillus coagulans 36D1]
 gi|229325230|gb|EEN90906.1| peptide deformylase [Bacillus coagulans 36D1]
          Length = 193

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            +V   DPILR+V   +      +    +  ML+ + ++              +GL+A Q
Sbjct: 14  DIVREGDPILRKVLDEVNMPPTEEDKAELRCMLQFLKNSQDPEIAGKCNLRAGVGLSANQ 73

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109
           IG+  R+  + + D    K   VF    +            +            V R   
Sbjct: 74  IGLNKRMFAVYIADEDGEKAYTVFNPKLVSHSISMIYLPQGEGCLSVDRKVDGFVPRYER 133

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           I V+  D +    +I   G  A   QHE+DHLNGI+F DH+++
Sbjct: 134 IKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINK 176


>gi|226948142|ref|YP_002803233.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226841538|gb|ACO84204.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto]
          Length = 166

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54
           M  KP+++  D  L R S  I+K N      +I+++ +           G  +AA QIG 
Sbjct: 1   MSAKPILLLGDETLYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D         FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIHMHLGDKT-----HYFINPILEFIGEDTFPLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLDWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|224510906|pdb|3G6N|A Chain A, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser
 gi|224510907|pdb|3G6N|B Chain B, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser
          Length = 191

 Score = 84.4 bits (207), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 1   MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45
           M+     ++   +P LR V++ +   ++ + ++L   MLE + ++             G+
Sbjct: 4   MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 63

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
           GLAA Q+ +  R++ + +       +                SV        +       
Sbjct: 64  GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 123

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 124 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 177


>gi|325195568|emb|CCA28422.1| peptide deformylase putative [Albugo laibachii Nc14]
          Length = 98

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           MVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+GLLA 
Sbjct: 1   MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAI 60

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 61  CIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 96


>gi|262045875|ref|ZP_06018839.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|260573834|gb|EEX30390.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
          Length = 184

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K +V   D +LR+V++P+   ++     L D+M+            E      G+GLAA
Sbjct: 4   MKDIVRDGDSVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D   +           I             +            V 
Sbjct: 64  PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|88606874|ref|YP_505573.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ]
 gi|88597937|gb|ABD43407.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ]
          Length = 197

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63
            +L  VS P+E ++S    +++ M+++    D +GL+AVQ+G   R+ VID+        
Sbjct: 13  KVLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNIT 72

Query: 64  --------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                       + ++ +      +    +  ++++            ++R   + ++Y 
Sbjct: 73  EDLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D      +I     LA C+QHE+DHLNG+L  + L  +K     
Sbjct: 133 DLAGNVCVIRTFNWLARCVQHEMDHLNGVLLANMLDNIKNKSAQ 176


>gi|317495963|ref|ZP_07954325.1| polypeptide deformylase [Gemella moribillum M424]
 gi|316913867|gb|EFV35351.1| polypeptide deformylase [Gemella moribillum M424]
          Length = 184

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR  +  ++  I+ +    +  +LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHDTLRARAEEVKAPISDEDKATLRGLLEYVIASQDDEKAEKLGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRAD 103
           A QI V  R++ + + D  + +N + +        S+  +       +       + +  
Sbjct: 63  APQINVSKRMIAVHIPDDENPENTVSYALYNPKIISNSVAKCYLAGGEGCLSVDKEIQGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   + N +   +    L + C QHE+DHLNGI+F DH+++     +  +  
Sbjct: 123 VPRYSKIKVVGYNENDEKITLTLTDLPSICFQHEIDHLNGIMFYDHINKENPFDVPAEYE 182

Query: 164 KL 165
           KL
Sbjct: 183 KL 184


>gi|257870629|ref|ZP_05650282.1| peptide deformylase [Enterococcus gallinarum EG2]
 gi|257804793|gb|EEV33615.1| peptide deformylase [Enterococcus gallinarum EG2]
          Length = 187

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V++ +   ++   + L  +M+E + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVPFPLSEADIQLGKDMMEFLENSQDPVKAEELNLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADV 104
           + +  R+  + +           F +          SV +                   V
Sbjct: 66  LDISKRITAVLVPSSDPENPEPEFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R A IT+ Y D   + Q +      A  +QHE+DHLNG++F DH++
Sbjct: 126 VRHARITISYYDMQGKKQKVRLKNYAAIVVQHEIDHLNGVMFYDHIN 172


>gi|330470474|ref|YP_004408217.1| formylmethionine deformylase [Verrucosispora maris AB-18-032]
 gi|328813445|gb|AEB47617.1| formylmethionine deformylase [Verrucosispora maris AB-18-032]
          Length = 195

 Score = 84.4 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61
             P+V  P P+L R    ++    + + L  +++  M  +   +GLAA Q+GV  ++  +
Sbjct: 31  VLPVVSAPHPVLSRAGAQVDPTAEETVRLAADLVATMRVSPGCVGLAAPQVGVGAQVFAV 90

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRADVKRSAFITVRYM-DCN 118
           D+  HA                 +          C+S+PD   DVKR++ + V      +
Sbjct: 91  DVTGHAKAVTVHGTFVLCNARVVEATRWKAGREGCMSVPDLTGDVKRASRLVVEGALPGS 150

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +   +  DG  A  LQHE+DH  G+LF+D +
Sbjct: 151 GEQVRLVTDGFEARALQHEIDHCAGLLFLDRV 182


>gi|171742883|ref|ZP_02918690.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC
           27678]
 gi|171278497|gb|EDT46158.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC
           27678]
          Length = 134

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           + +L+ ++L+ +      GL+A QIGV  R    ++          V             
Sbjct: 1   MRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIGYVLNPVLEETSGE------ 54

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               EGCLS+P      +R+ +  VR +D +    ++   G++   LQHE DHL+G +++
Sbjct: 55  QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHGIMGRMLQHETDHLDGHVYL 114

Query: 148 DHLSRLKRDMITKKMSKLVQ 167
           D L + +R    + M    Q
Sbjct: 115 DRLEKEERREAMRYMRNHRQ 134


>gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
 gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
          Length = 128

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 79/127 (62%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           +  L D M E M+++DGIGLAA Q+G+  R++V+D     H K   + +NPKI   S++ 
Sbjct: 1   MSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEK 60

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
            ++ EGCLS+PD   +V R   I V + + + +++    DGL A  +QHE+DHL GILF+
Sbjct: 61  VLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFV 120

Query: 148 DHLSRLK 154
           D+ +  +
Sbjct: 121 DYFNDKE 127


>gi|308070801|ref|YP_003872406.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
 gi|305860080|gb|ADM71868.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
          Length = 193

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   +PILR    P+   ++ D +  +  ML+ + ++             G+GL+A 
Sbjct: 12  KDIVREGEPILRTKVDPVCLPLSEDDLQQMQWMLDYLKNSQNEELAGRYDLRPGVGLSAN 71

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPDYRADVKRSA 108
           Q+G+  R+  I  +D        +F    +   T        +            V R  
Sbjct: 72  QVGLNKRMCAIYYEDGDKTVEYALFNPKLVSHSTSMIYLEQGEGCLSVDRYVAGYVPRYE 131

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I ++    +   +++   G  A  +QHE+DHL+GI+F D ++  
Sbjct: 132 KIRIKATLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 176


>gi|257899443|ref|ZP_05679096.1| peptide deformylase [Enterococcus faecium Com15]
 gi|293573058|ref|ZP_06683999.1| peptide deformylase [Enterococcus faecium E980]
 gi|257837355|gb|EEV62429.1| peptide deformylase [Enterococcus faecium Com15]
 gi|291606877|gb|EFF36258.1| peptide deformylase [Enterococcus faecium E980]
          Length = 187

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + ++L   MLE + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAEEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104
           + +  R++ + +       +                SV        +       +    V
Sbjct: 66  LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173


>gi|227903714|ref|ZP_04021519.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796]
 gi|227868601|gb|EEJ76022.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796]
          Length = 184

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LRRVS  +   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D               I             +            V 
Sbjct: 64  PQVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +TV Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 124 RPDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|238855249|ref|ZP_04645568.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|260664609|ref|ZP_05865461.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932458|ref|ZP_06337883.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|313471931|ref|ZP_07812423.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|238832141|gb|EEQ24459.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|239529143|gb|EEQ68144.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|260561674|gb|EEX27646.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303407|gb|EFA95584.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 184

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LRRV+  +   ++     L D+M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + +               I       V     +            V 
Sbjct: 64  PQVGEGVQMASLLVPNDKGEIIFKETFVNPKIVSESVRQVCLSEGEGCLSVDKVIDGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T++Y     + + I   G  A    HE+DHLNG LF D + +
Sbjct: 124 RPNKLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|259046789|ref|ZP_05737190.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
 gi|259036557|gb|EEW37812.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
          Length = 186

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 18/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLA 48
             K +V+   P LR+ +  +   ++ +   L   MLE ++++              +GLA
Sbjct: 3   TMKDIVLEGHPALRKRAEKLTFPLSPEHQELAKEMLEFLHNSQNPEIAEKYGLRAGVGLA 62

Query: 49  AVQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIIT--FSDDFSVYQEGCLSIPDYRAD 103
           A Q+G   +++ +     ++     + +      +            +       +    
Sbjct: 63  APQLGKSIQMIALLVPGFEEEEAILDEVWINPRIMRESVKKACLKDGEGCLSVNREVPGI 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   ITV+Y D N    +   +   A  +QHE+DHLNG++F DH++
Sbjct: 123 VLRPERITVKYQDVNGDEFVRTLNDYEAIVVQHEIDHLNGVMFYDHIN 170


>gi|261885374|ref|ZP_06009413.1| peptide deformylase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 153

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 2/138 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  L   S  + K ++++   +D+M + M + +GIGLAA+Q+G   R+ +I
Sbjct: 1   MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +L +    ++    +      F       VYQEGCLS+P Y  DVKR+  I +++ D   
Sbjct: 61  NLINEDEVQDKNDLLEIINPKFISKDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFG 120

Query: 120 QHQIIYADGLLATCLQHE 137
             + + ADGLL+  +QHE
Sbjct: 121 NLKELEADGLLSVAIQHE 138


>gi|69248512|ref|ZP_00604761.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257878822|ref|ZP_05658475.1| peptide deformylase [Enterococcus faecium 1,230,933]
 gi|257881459|ref|ZP_05661112.1| peptide deformylase [Enterococcus faecium 1,231,502]
 gi|257885731|ref|ZP_05665384.1| peptide deformylase [Enterococcus faecium 1,231,501]
 gi|257890681|ref|ZP_05670334.1| peptide deformylase [Enterococcus faecium 1,231,410]
 gi|258615107|ref|ZP_05712877.1| peptide deformylase [Enterococcus faecium DO]
 gi|260558387|ref|ZP_05830583.1| peptide deformylase [Enterococcus faecium C68]
 gi|261207094|ref|ZP_05921783.1| peptide deformylase [Enterococcus faecium TC 6]
 gi|289565904|ref|ZP_06446344.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|293556871|ref|ZP_06675432.1| peptide deformylase [Enterococcus faecium E1039]
 gi|293563619|ref|ZP_06678063.1| peptide deformylase [Enterococcus faecium E1162]
 gi|293567826|ref|ZP_06679167.1| peptide deformylase [Enterococcus faecium E1071]
 gi|294614601|ref|ZP_06694505.1| peptide deformylase [Enterococcus faecium E1636]
 gi|294618483|ref|ZP_06698047.1| peptide deformylase [Enterococcus faecium E1679]
 gi|294621220|ref|ZP_06700405.1| peptide deformylase [Enterococcus faecium U0317]
 gi|314938849|ref|ZP_07846120.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|314943654|ref|ZP_07850408.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|314949089|ref|ZP_07852449.1| peptide deformylase [Enterococcus faecium TX0082]
 gi|314952182|ref|ZP_07855200.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|314991844|ref|ZP_07857301.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|314996555|ref|ZP_07861592.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus faecium]
 gi|68194406|gb|EAN08912.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257813050|gb|EEV41808.1| peptide deformylase [Enterococcus faecium 1,230,933]
 gi|257817117|gb|EEV44445.1| peptide deformylase [Enterococcus faecium 1,231,502]
 gi|257821587|gb|EEV48717.1| peptide deformylase [Enterococcus faecium 1,231,501]
 gi|257827041|gb|EEV53667.1| peptide deformylase [Enterococcus faecium 1,231,410]
 gi|260075561|gb|EEW63867.1| peptide deformylase [Enterococcus faecium C68]
 gi|260078722|gb|EEW66424.1| peptide deformylase [Enterococcus faecium TC 6]
 gi|289162277|gb|EFD10137.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|291589411|gb|EFF21218.1| peptide deformylase [Enterococcus faecium E1071]
 gi|291592503|gb|EFF24108.1| peptide deformylase [Enterococcus faecium E1636]
 gi|291595240|gb|EFF26569.1| peptide deformylase [Enterococcus faecium E1679]
 gi|291599216|gb|EFF30248.1| peptide deformylase [Enterococcus faecium U0317]
 gi|291600955|gb|EFF31246.1| peptide deformylase [Enterococcus faecium E1039]
 gi|291604419|gb|EFF33909.1| peptide deformylase [Enterococcus faecium E1162]
 gi|313589296|gb|EFR68141.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|313593549|gb|EFR72394.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|313595714|gb|EFR74559.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|313597691|gb|EFR76536.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|313641860|gb|EFS06440.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|313644505|gb|EFS09085.1| peptide deformylase [Enterococcus faecium TX0082]
          Length = 187

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V++ +   ++ + ++L   MLE + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104
           + +  R++ + +       +                SV        +       +    V
Sbjct: 66  LDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173


>gi|227550841|ref|ZP_03980890.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257887905|ref|ZP_05667558.1| peptide deformylase [Enterococcus faecium 1,141,733]
 gi|257893294|ref|ZP_05672947.1| peptide deformylase [Enterococcus faecium 1,231,408]
 gi|257896477|ref|ZP_05676130.1| peptide deformylase [Enterococcus faecium Com12]
 gi|293379255|ref|ZP_06625401.1| peptide deformylase [Enterococcus faecium PC4.1]
 gi|227179939|gb|EEI60911.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257823959|gb|EEV50891.1| peptide deformylase [Enterococcus faecium 1,141,733]
 gi|257829673|gb|EEV56280.1| peptide deformylase [Enterococcus faecium 1,231,408]
 gi|257833042|gb|EEV59463.1| peptide deformylase [Enterococcus faecium Com12]
 gi|292642051|gb|EFF60215.1| peptide deformylase [Enterococcus faecium PC4.1]
          Length = 187

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + ++L   MLE + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAEEVSLPLSEEDLSLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104
           + +  R++ + +       +                SV        +       +    V
Sbjct: 66  LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173


>gi|300778831|ref|ZP_07088689.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
 gi|300504341|gb|EFK35481.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
          Length = 211

 Score = 83.7 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
              L  +S   + ++ +I  L+  M E +  +  G+G+AA Q+G+  +++ +   D    
Sbjct: 48  HKTLLNISSEADPLDPNIAVLVKRMRESLLSTDGGVGIAAPQVGINRKIIWVQRFDKEGA 107

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
                  NP I+  SD  ++  EG LSIPD+R    RS  I + Y+D   Q      +G 
Sbjct: 108 PLEYFI-NPVIVWRSDLQNLGPEGDLSIPDFRDQFYRSKVIQLEYVDLKGQKYSEIVEGF 166

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A   QHE+DHL GIL  D   + K D   K
Sbjct: 167 TAVIFQHEIDHLFGILISDKKEKEKNDSYKK 197


>gi|322411042|gb|EFY01950.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 204

 Score = 83.7 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++   +P LR V++ +   ++ + + L + M++ +  +              +GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           I V  R++ +            P    + + + ++     +          +        
Sbjct: 78  IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D ++ 
Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190


>gi|332044807|gb|EGI81000.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 215

 Score = 83.7 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 14  LRRVSRPIEKINSD--IMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHR 69
           LR  S  ++  ++D  +   I  +   +  +    +G+AA Q+GVL  ++ +   D    
Sbjct: 66  LRSKSAYVKPDSTDVVLNTFIKRLYATVRDSISLGVGIAAPQVGVLKNVIWVQRFDKDEF 125

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +      I    +  +  +              RS  + + Y   N +H I      
Sbjct: 126 PFEVYLNPKIISYSQEKQTRKEGCLSIPNRTDVLNNRSKIVKIEYDKINGEHIIETITDF 185

Query: 130 LATCLQHELDHLNGILFIDHLSRL 153
            A   QHE+DHLNGIL++DHL + 
Sbjct: 186 TAIIFQHEIDHLNGILYLDHLEKE 209


>gi|227529038|ref|ZP_03959087.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
 gi|227351050|gb|EEJ41341.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
          Length = 190

 Score = 83.7 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLID------------NMLEVMYSTDGIGLAA 49
            K +V   DP+LR+ +  +   ++ +                   + +      G+GLAA
Sbjct: 7   MKDIVRDGDPVLRKRAAKVTFPLSEEDQEFAKRAMEYLEVSQDPELCKKYKLRAGVGLAA 66

Query: 50  VQIGVLYRLVVID----LQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRA 102
            Q+G+  ++  +      +D        V INP I++ S  +   +  +       D   
Sbjct: 67  PQVGISKQMAAVLVPSLNEDDDQPSFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPG 126

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V R   IT+RY D   +   +      A   QHE+DHL+G+LF DH++
Sbjct: 127 YVPRHDRITLRYQDVKGETHQLRLKNYPAIVCQHEIDHLHGVLFYDHIN 175


>gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase
          Length = 184

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLI------------DNMLEVMYSTDGIGLA 48
             K ++    P LR+ +  +E  +  +    +            + + +      G+GLA
Sbjct: 3   TXKDIIRDGHPTLRQKAAELELPLTKEEKETLIAXREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104
           A QI +  R + + + D    K+    +    I        Y    +       +    V
Sbjct: 63  APQINISKRXIAVLIPDDGSGKSYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG+ F DH+ +
Sbjct: 123 HRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDK 170


>gi|251781679|ref|YP_002995981.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390308|dbj|BAH80767.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 204

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++   +P LR V++ +   ++ + + L + M++ +  +              +GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           I V  R++ +            P    + + + ++     +          +        
Sbjct: 78  IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D ++ 
Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190


>gi|323126471|gb|ADX23768.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 204

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++   +P LR V++ +   ++ + + L + M++ +  +              +GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           I V  R++ +            P    + + + ++     +          +        
Sbjct: 78  IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D ++ 
Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190


>gi|313683120|ref|YP_004060858.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994]
 gi|313155980|gb|ADR34658.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994]
          Length = 273

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K L+ +PD  +R +S  I K + ++  L++NM + M   +   ++A+QI + Y  +++
Sbjct: 1   MIKELITYPDERIRYISADIRKYDDELFELLENMRDTMEHHELNAISAIQIAIPYSAILL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              ++         IN ++I+      + +        + A +KR   I V Y + N + 
Sbjct: 61  KEGENILE-----LINARLISTEGVEEIDEVSPYFPKGFSAKIKRYGKIKVVYENRNGEL 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + + A+G L+  LQ ++D L G   +D L + +R    +
Sbjct: 116 RHLDAEGELSQRLQRQIDFLFGGTLLDKLDKKERQKAEE 154


>gi|58337138|ref|YP_193723.1| peptide deformylase [Lactobacillus acidophilus NCFM]
 gi|58254455|gb|AAV42692.1| polypeptide deformylase Pdf [Lactobacillus acidophilus NCFM]
          Length = 191

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   DP+LRRVS  +   ++     L D+M+E                  G+GLAA
Sbjct: 11  MKDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 70

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D               I             +            V 
Sbjct: 71  PQVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 130

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +TV Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 131 RPDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 177


>gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968]
 gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968]
          Length = 219

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 2   VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++  +V    P    +L+  ++ +   ++    +LI  M   +    G+GLAA Q+    
Sbjct: 19  MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 78

Query: 57  RLVVIDLQDH---------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           R++ I + +          +     ++                 EGC S+      V R 
Sbjct: 79  RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 138

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I V Y D   Q      +G  +  LQHE+DHLNG L ID L+ 
Sbjct: 139 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP 183


>gi|254457085|ref|ZP_05070513.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
 gi|207085877|gb|EDZ63161.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
          Length = 278

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P        +   N +I+++I ++ + + +     LAA QIG +Y ++VI
Sbjct: 1   MVRDIITYPTPPSVEYGTDVRVFNEEIISIIQDLKDTIEANSLEALAAFQIGAMYNIIVI 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              D +       F+      I    +     E     P   A+V+R   +++ Y D N 
Sbjct: 61  KKGDMSFVAGDDGFLELINPRIISCSEKISTVEKTAYFPGLSANVERHNNVSIIYEDKNF 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +   + A G  A  LQ ++D+  G  FI+ LS+ ++ +  KK+ 
Sbjct: 121 KQHNLKATGGEAILLQRKIDYTFGSSFINKLSKDEKKLFEKKLE 164


>gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 222

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 2   VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++  +V    P    +L+  ++ +   ++    +LI  M   +    G+GLAA Q+    
Sbjct: 22  MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 81

Query: 57  RLVVIDLQDH---------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           R++ I + +          +     ++                 EGC S+      V R 
Sbjct: 82  RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 141

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I V Y D   Q      +G  +  LQHE+DHLNG L ID L+ 
Sbjct: 142 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP 186


>gi|229823199|ref|ZP_04449268.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271]
 gi|229787365|gb|EEP23479.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271]
          Length = 185

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++    P LR+ +  +E  +  ++      M E + ++              +GLAA Q
Sbjct: 3   DIIEEGHPTLRQAAEAVEFPLTDELKATALAMHEFLVNSQNPEIAEKYGLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQ-------EGCLSIPDYRA 102
           I +  ++  + +   D    +   +             SV +              +   
Sbjct: 63  INLPKQIFAVHIMSYDEEGNEAEPLLSEILFNPKIISHSVQEVALRDGEGCLSVNREVPG 122

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V R   I +RY D   +   +      A  +QHELDHL GI+F DH++
Sbjct: 123 LVPRPRRIRLRYQDMEGKEHELRLRDYEAIVVQHELDHLKGIMFYDHIN 171


>gi|116629817|ref|YP_814989.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|282851676|ref|ZP_06261041.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311110541|ref|ZP_07711938.1| peptide deformylase [Lactobacillus gasseri MV-22]
 gi|122273245|sp|Q042S1|DEF_LACGA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116095399|gb|ABJ60551.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|282557644|gb|EFB63241.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311065695|gb|EFQ46035.1| peptide deformylase [Lactobacillus gasseri MV-22]
          Length = 184

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +    +P+LR+V++P+   +  +   L D M+            E      G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + +               I             +       D    V R 
Sbjct: 66  VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + + Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|262199337|ref|YP_003270546.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365]
 gi|262082684|gb|ACY18653.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365]
          Length = 171

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 11/158 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55
           M  + ++   +P L + S+ +E   +    LI ++ +        +  G G+AA QIGV 
Sbjct: 1   MPARTILQLGNPDLWQSSQRVESPAAA-QALIQDLADTLAAFREKNGFGRGIAAPQIGVH 59

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ +++            INP+++  S++  V  + C S+P     V R+A + V + 
Sbjct: 60  QRLIFVNVPGGFSGP----LINPQVVWSSEEQMVLWDDCFSLPGLMVRVARAAQVRVSFQ 115

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH-LSR 152
           + + + + I AD  L+  LQHE+DHL+GIL +   +S 
Sbjct: 116 NQHGEARSIEADRALSELLQHEIDHLDGILAVQRAISP 153


>gi|257866651|ref|ZP_05646304.1| peptide deformylase [Enterococcus casseliflavus EC30]
 gi|257872832|ref|ZP_05652485.1| peptide deformylase [Enterococcus casseliflavus EC10]
 gi|257876255|ref|ZP_05655908.1| peptide deformylase [Enterococcus casseliflavus EC20]
 gi|257800609|gb|EEV29637.1| peptide deformylase [Enterococcus casseliflavus EC30]
 gi|257806996|gb|EEV35818.1| peptide deformylase [Enterococcus casseliflavus EC10]
 gi|257810421|gb|EEV39241.1| peptide deformylase [Enterococcus casseliflavus EC20]
          Length = 187

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L   M+            E +    G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADV 104
           + +  R+  + +      K    F +          SV +                   V
Sbjct: 66  LDISKRITAVLVPSSDPEKTEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R A IT+ Y D N + + +      A  +QHE+DHLNG++F DH++
Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVVQHEIDHLNGVMFYDHIN 172


>gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b]
 gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b]
          Length = 179

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   D  LR  S  +     ++ + L+D M             E      G+G+A
Sbjct: 3   TMKDVIREGDERLRARSTEVPIPPTAEDLALLDEMETFLVNSQDPEMSEKYELRGGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRADVKR 106
           A Q+GV  R   + LQ+        +F         +   +   +         + +V R
Sbjct: 63  APQLGVNRRFFTVLLQEEEETFKLSIFNPKITSHSVEQTFLNGGEGCLSVDRVVKGNVPR 122

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              IT+   D + +   +   G+ A   QHELDHL+GI+F D ++
Sbjct: 123 FRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFYDRIN 167


>gi|300361479|ref|ZP_07057656.1| peptide deformylase [Lactobacillus gasseri JV-V03]
 gi|300354098|gb|EFJ69969.1| peptide deformylase [Lactobacillus gasseri JV-V03]
          Length = 184

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +    +P+LR+V++P+   +  +   L D M+            E      G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKII----TFSDDFSVYQEGCLSIPDYRADVKRS 107
           +G   ++  + + +               I          +  +       D    V R 
Sbjct: 66  VGKSIQMAALLVPNDKGEIIFKEVFVNPKILSESVRKACLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + + Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|111225848|ref|YP_716642.1| putative polypeptide deformylase [Frankia alni ACN14a]
 gi|111153380|emb|CAJ65136.1| hypothetical protein; putative Polypeptide deformylase [Frankia
           alni ACN14a]
          Length = 550

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 13/161 (8%)

Query: 1   MVKKPLVIFPDPILRRVSR----PIEKINSD--IMNLIDNMLEVMYST---DGIGLAAVQ 51
           M    +V   DP L + +R    P+E  ++   +  L   M  V        G+G+AA Q
Sbjct: 373 MAAAGIVQVGDPSLHQPARSFELPVEAEDARRVVAELSSAMERVSALHTFGKGMGIAAPQ 432

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IG+     ++   D          +NP++I    +     EGCLS  D R  V RS  + 
Sbjct: 433 IGINRAAAIVRSADGDILT----LLNPRVIESVPESDEQYEGCLSFFDVRGIVPRSLELH 488

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V + D + +  I      LA  + HE+DHL+G L+ D +  
Sbjct: 489 VEHTDTSGRRHITVYRQGLARLVAHEIDHLHGRLYTDRMRP 529


>gi|116490852|ref|YP_810396.1| peptide deformylase [Oenococcus oeni PSU-1]
 gi|290890300|ref|ZP_06553379.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429]
 gi|116091577|gb|ABJ56731.1| peptide deformylase [Oenococcus oeni PSU-1]
 gi|290480086|gb|EFD88731.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429]
          Length = 185

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +    +P+LR  ++P+   ++ +I  L   MLE              +   G+GLA  Q
Sbjct: 3   DITRDGNPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 62

Query: 52  IGVLYRL----VVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRAD 103
           +    ++    +     +   +      +    IT            +       D    
Sbjct: 63  VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALETGEGCLSKDEDTPGI 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           V R+  ITV Y D N +H  I      A   QHE+DHL GI++ DH++ L
Sbjct: 123 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 172


>gi|146319598|ref|YP_001199310.1| peptide deformylase [Streptococcus suis 05ZYH33]
 gi|146321796|ref|YP_001201507.1| peptide deformylase [Streptococcus suis 98HAH33]
 gi|253752596|ref|YP_003025737.1| polypeptide deformylase [Streptococcus suis SC84]
 gi|253754422|ref|YP_003027563.1| polypeptide deformylase [Streptococcus suis P1/7]
 gi|253756356|ref|YP_003029496.1| polypeptide deformylase [Streptococcus suis BM407]
 gi|158514139|sp|A4VXS1|DEF_STRSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514157|sp|A4W418|DEF_STRS2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145690404|gb|ABP90910.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
 gi|145692602|gb|ABP93107.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
 gi|251816885|emb|CAZ52534.1| polypeptide deformylase [Streptococcus suis SC84]
 gi|251818820|emb|CAZ56662.1| polypeptide deformylase [Streptococcus suis BM407]
 gi|251820668|emb|CAR47430.1| polypeptide deformylase [Streptococcus suis P1/7]
 gi|292559212|gb|ADE32213.1| Formylmethionine deformylase [Streptococcus suis GZ1]
 gi|319759011|gb|ADV70953.1| peptide deformylase [Streptococcus suis JS14]
          Length = 204

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR+V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDD-----------FSVYQEGCLSIPD 99
           I V  R++ +          NP            +                +       +
Sbjct: 78  IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVLYNPKIVAHSVQEAAMEGGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +  V R A +TV YMD N +   I   G  A  +QHE+DHLNG++F D +   
Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPE 191


>gi|78776817|ref|YP_393132.1| formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497357|gb|ABB43897.1| Formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 5/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K +V +P P   + +  +   N +I +LI+++ + + +     LAA QIG  + +VV+
Sbjct: 20  MIKEIVTYPTPPSVQYATDVRVFNEEIESLIEDLKDTIKANSLEALAAFQIGSYFNIVVV 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       + +    I          E     P+  A+V R   I++ Y D   Q 
Sbjct: 80  AQDGG-----EFLELINPRIINPHGRVTTIEKTAYFPNLSAEVTRYETISLVYQDRELQQ 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             + ADG  +  LQ ++D+  G  F++ L+++++ +  KK+ 
Sbjct: 135 HSLKADGAFSILLQRKVDYTFGSTFLNKLNKVEKKLFQKKLE 176


>gi|163790334|ref|ZP_02184766.1| peptide deformylase [Carnobacterium sp. AT7]
 gi|159874405|gb|EDP68477.1| peptide deformylase [Carnobacterium sp. AT7]
          Length = 187

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   I+S+   L ++ML            E      G+GLAA Q
Sbjct: 6   DIIKEGHPTLRMVAKELTLPISSEEKQLGEDMLQFLKNSQDPEIAEKYSLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104
           + +  R++ + +       +  +     +       SV        +       +    V
Sbjct: 66  LDISKRMIAVHIPGIEEGTDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R + IT+ Y D   +   I      A  +QHE+DH+NGI+F DH++
Sbjct: 126 PRHSRITLTYFDLAGEAHKIRLKNYQAIVIQHEIDHINGIMFYDHIN 172


>gi|238853448|ref|ZP_04643827.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|238834020|gb|EEQ26278.1| peptide deformylase [Lactobacillus gasseri 202-4]
          Length = 184

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +    +P+LR+V+RP+   +  +   L D M+            E      G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVARPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + +               I             +       D    V R 
Sbjct: 66  VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + + Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|330833559|ref|YP_004402384.1| polypeptide deformylase [Streptococcus suis ST3]
 gi|329307782|gb|AEB82198.1| polypeptide deformylase [Streptococcus suis ST3]
          Length = 204

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR+V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------ 100
           I V  R++ +     + ++                      SV +               
Sbjct: 78  IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +  V R A +TV YMD N +   I   G  A  +QHE+DHLNGI+F D +   
Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGIMFYDRIDPE 191


>gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 230

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              P+V    P+LR ++RP +    ++++  L+  +   M +  G+GLAA QIG+   L 
Sbjct: 26  AVAPIVQAGHPVLRAMARPYDGQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALA 85

Query: 60  VIDLQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           V++                     V +NP      D+   + EGCLS+  Y+A V R   
Sbjct: 86  VVEDPGTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQRA 145

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + +  +D           G  A  +QHE DHL+G L++D 
Sbjct: 146 VHLTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLDR 185


>gi|323466783|gb|ADX70470.1| Peptide deformylase [Lactobacillus helveticus H10]
          Length = 184

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 17/169 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +V   D +LR+V++P+   ++     L ++M+E                  G+GLAA
Sbjct: 4   MKDIVRDGDLVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+G   ++  + + D               I             +            V 
Sbjct: 64  PQVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++ +
Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKE 172


>gi|295425141|ref|ZP_06817846.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
 gi|295065200|gb|EFG56103.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
          Length = 200

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K +    +P+LR+V++P+   ++     L  +M+E                  G+GLAA
Sbjct: 20  MKDITRDGNPVLRKVAQPLTFPLSDHYKQLAKDMMEYLINSQDPKIAEKHQLRAGVGLAA 79

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105
            Q+    ++  + + D               I       V     +       +    V 
Sbjct: 80  PQVDESVQMASLLVPDDKGNILFKETFVNPEIISESVRKVCLSEGEGCLSVDKEIDGYVP 139

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 140 RPDKLTIHYFTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 186


>gi|239636306|ref|ZP_04677308.1| polypeptide deformylase [Staphylococcus warneri L37603]
 gi|239597661|gb|EEQ80156.1| polypeptide deformylase [Staphylococcus warneri L37603]
          Length = 162

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PI  + +  ++  +  +   + ++ + +Y+ +G  L+A QIG+  ++ +
Sbjct: 1   MSVKKLVKSEHPIFNQPANSVKHFDDQLKQTLIDVEDSLYALEGSALSANQIGINQQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++           INPKI   S++     EG +S+P+   +V+RS  I V   D N  
Sbjct: 61  VDMEMEGLL----QLINPKIKKQSEETITDLEGSVSLPNVFGEVERSKMIVVESNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + A   +A  + H +D LNGI F +   + KR +  ++M 
Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTE---KAKRILSEEEME 156


>gi|223933744|ref|ZP_03625717.1| peptide deformylase [Streptococcus suis 89/1591]
 gi|223897586|gb|EEF63974.1| peptide deformylase [Streptococcus suis 89/1591]
          Length = 204

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR+V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------ 100
           I V  R++ +     + ++                      SV +               
Sbjct: 78  IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +  V R A +TV YMD N +   I   G  A  +QHE+DHLNG++F D +   
Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPE 191


>gi|331701103|ref|YP_004398062.1| peptide deformylase [Lactobacillus buchneri NRRL B-30929]
 gi|329128446|gb|AEB72999.1| Peptide deformylase [Lactobacillus buchneri NRRL B-30929]
          Length = 188

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 21/171 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49
            K +V   DP+LR+ ++ ++  ++ +   L  +++E +  +              +GLAA
Sbjct: 4   MKDIVRDGDPVLRKQAQKVKFPLSKEDKQLAHDLMEYLEVSQDPEQCEKLGLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYR 101
            Q+GV   +  + +      +         II              +  +       D  
Sbjct: 64  PQVGVSEMMASVLVPSEDEDEKDEPVFKDVIINPVIVSNSVQRGALTEGEGCLSVDKDIP 123

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             V R+A IT++Y D + +   +      A   QHE+DHL+G LF DH+++
Sbjct: 124 GYVPRAARITLKYQDVDGKEHKVRLKNYPAIVCQHEIDHLHGTLFYDHINK 174


>gi|323340641|ref|ZP_08080893.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
 gi|323091764|gb|EFZ34384.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
          Length = 198

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            ++    P LR  +  I   ++ + + L  +++E                  G+GLAA Q
Sbjct: 20  DIIREGHPTLRARAEKIAFPLSDEDLKLAHDLMEFLENSQDEKIAKKYKLRAGVGLAAPQ 79

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKR 106
           +    R+  + + D   +      +       S+   +      +       +    V R
Sbjct: 80  VDASKRITAVLVPDEEGKPPFFKHVLVNPTILSESVQMAALSEGEGCLSVDREVPGYVPR 139

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I +R+ D +    +       A  +QHE+DHLNGI+F DH++
Sbjct: 140 HEKIKLRWYDLDGNEHVERLRDYTAIVVQHEIDHLNGIMFYDHIN 184


>gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis]
          Length = 247

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 6   LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DPILR     I   E     I ++ D +L V+   D +G++A QIG    +  + 
Sbjct: 41  VVQIGDPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVG 100

Query: 63  LQDHAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
                 +                 P V INP+I       S ++EGC S+  + A V R 
Sbjct: 101 FTKSQIKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARY 160

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + ++  + + +     A    A  +QHE+DHL+G LFID
Sbjct: 161 RKVLLKGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201


>gi|83941565|ref|ZP_00954027.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847385|gb|EAP85260.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 131

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M++ M +  G+GLAA QIGV  ++ V+D      R   +   NP +I  S   + Y+E  
Sbjct: 1   MIDTMDAMPGVGLAAPQIGVSLQVAVVDA--SQARDKRIRLANPVVIDASAIMNEYEEAS 58

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++P   A ++R   + V+Y+D           GL AT +QH++DHL G +F+D+LS+ +
Sbjct: 59  PNLPGISAKIRRPRGVKVQYLDEQGARVTRDFVGLEATSVQHQIDHLAGKMFVDNLSKTR 118

Query: 155 RDMITKKMSKLV 166
           RDM+ +K  K  
Sbjct: 119 RDMLLRKARKYK 130


>gi|328957239|ref|YP_004374625.1| peptide deformylase [Carnobacterium sp. 17-4]
 gi|328673563|gb|AEB29609.1| peptide deformylase [Carnobacterium sp. 17-4]
          Length = 187

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   I+ +   L ++ML            E      G+GLAA Q
Sbjct: 6   DIIREGHPTLRMVAKELTLPISEEEKQLGNDMLQFLKNSQDPEIAEKYNLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104
           + +  RL+ + +       +  +     +       SV        +       +    V
Sbjct: 66  LDISKRLIAVHIPGIEEGIDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            R + IT+ Y D   +          A  +QHE+DH+NGI+F DH+++ 
Sbjct: 126 PRHSRITLTYFDLEGELHKTRLKNYPAIVIQHEIDHINGIMFYDHINKE 174


>gi|118586207|ref|ZP_01543674.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163]
 gi|118433357|gb|EAV40056.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163]
          Length = 197

 Score = 81.0 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +    +P+LR  ++P+   ++ +I  L   MLE              +   G+GLA  Q
Sbjct: 15  DITRDGNPVLRAKAQPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 74

Query: 52  IGVLYRL----VVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRAD 103
           +    ++    +     +   +      +    IT            +       D    
Sbjct: 75  VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALEAGEGCLSKDEDTPGI 134

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           V R+  ITV Y D N +H  I      A   QHE+DHL GI++ DH++ L
Sbjct: 135 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 184


>gi|300121292|emb|CBK21672.2| unnamed protein product [Blastocystis hominis]
          Length = 283

 Score = 81.0 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 19/181 (10%)

Query: 9   FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
             + +LR+  R I+     ++ +   N +      +  G++A Q+    R+ VI      
Sbjct: 16  LGEKVLRQKCRLIKDPTSDEMQDFAMNAMFTCIRNNAFGVSAPQLYRPIRMFVIRDYSTV 75

Query: 65  --------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                   +       M + NP+I + S       E CLS P   A V R   I + Y+D
Sbjct: 76  PDPSQLSAEQHMSLPLMPYFNPRIESRSRKLMGEFESCLSDPWNVAFVARPHTIGISYID 135

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID-------HLSRLKRDMITKKMSKLVQLR 169
              ++Q     G  A   QHE DHL G    D       ++S+ +         K+  L 
Sbjct: 136 GFGKYQEKEISGWEAQVFQHEYDHLEGKTMADMCTQKGLYMSKERYKRCEAYWKKVENLP 195

Query: 170 D 170
           D
Sbjct: 196 D 196


>gi|225867820|ref|YP_002743768.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus]
 gi|259645185|sp|C0MFA6|DEF_STRS7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225701096|emb|CAW97934.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus]
          Length = 204

 Score = 80.6 bits (197), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 25/175 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +              +GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99
           I V  R++ +          NP            +                +        
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               V R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++  K
Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKK 192


>gi|294155360|ref|YP_003559744.1| peptide deformylase [Mycoplasma crocodyli MP145]
 gi|291600027|gb|ADE19523.1| peptide deformylase [Mycoplasma crocodyli MP145]
          Length = 183

 Score = 80.6 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 18/170 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQ 51
           M +  LV  P  +LR  S+ +   +  + + L + M+        E      G+G+AAVQ
Sbjct: 1   MYEVKLVKLPKKVLREKSKDVPIPLLPEDVELAEKMIYHIDDSQKEGSKFRAGVGVAAVQ 60

Query: 52  IGVLYRLVVIDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            G+L  +  + ++D             NP +    + +T   D         S P     
Sbjct: 61  YGILKNVFYVHVRDFDKDIEIFRDVLFNPKIISKSETLTALSDGEGCLSVSESWPGQSGL 120

Query: 104 VKRSAFITVRYM-DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V RSA I V        +       G +A   QHELDHL G LFID + +
Sbjct: 121 VHRSARIVVEAYSYMQKKVVEFDVFGYVAIVFQHELDHLEGKLFIDRIDK 170


>gi|259500700|ref|ZP_05743602.1| peptide deformylase [Lactobacillus iners DSM 13335]
 gi|312871379|ref|ZP_07731474.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a]
 gi|259168084|gb|EEW52579.1| peptide deformylase [Lactobacillus iners DSM 13335]
 gi|311093032|gb|EFQ51381.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a]
          Length = 181

 Score = 80.6 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q
Sbjct: 3   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + D               I             +       D +  V R+
Sbjct: 63  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 122

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 123 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 167


>gi|57238913|ref|YP_180049.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58578845|ref|YP_197057.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58616903|ref|YP_196102.1| peptide deformylase 1 [Ehrlichia ruminantium str. Gardel]
 gi|57160992|emb|CAH57898.1| putative peptide deformylase 2 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416515|emb|CAI27628.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Gardel]
 gi|58417471|emb|CAI26675.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 194

 Score = 80.2 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 16/157 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63
           L  +S PIEKI+ D++ L D+M++VM ++  +GL+AVQ+G   R+ VI++          
Sbjct: 15  LHAISHPIEKIDQDVIALADDMMKVMENSKTVGLSAVQLGSHKRMFVINMFSGLFDMTQD 74

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                     H KN +      +   ++   +++    +      ++ R   +  RY D 
Sbjct: 75  IKVLSGHHSLHGKNMVCINPEILSFSAETVDLFEGCSSAKSYGLINITRPRHMDFRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                II   G L+ C+QHE+DHLNGIL  + +  +K
Sbjct: 135 FGNKCIIRVYGWLSRCIQHEMDHLNGILLANVVDNIK 171


>gi|325567244|ref|ZP_08143911.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
 gi|325158677|gb|EGC70823.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
          Length = 187

 Score = 80.2 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L   M+            E +    G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADV 104
           + +  R+  + +      K    F +          SV +                   V
Sbjct: 66  LDISKRITAVLVPSSDPEKAEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R A IT+ Y D N + + +      A  +QHE+DHLNG++F +H++
Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVIQHEIDHLNGVMFYNHIN 172


>gi|116492920|ref|YP_804655.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
 gi|122265616|sp|Q03F09|DEF_PEDPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116103070|gb|ABJ68213.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
          Length = 184

 Score = 80.2 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 19/171 (11%)

Query: 2   VKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIG 46
           + K   +    +P+LR+ +  +   ++   + + D M+E              +   G+G
Sbjct: 1   MIKMNDITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPAIAEKYHLRAGVG 60

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRA 102
           LAA QIG+  ++  + +    +  +    +   +I             +       D   
Sbjct: 61  LAAPQIGLSIQMASVLVPGPDNTIDLEETLVNPVIVSQSVQIAALEEGEGCLSVDKDVPG 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            V R   ITVRY   + + + I      A   QHE+DHL G LF DH+++ 
Sbjct: 121 YVPRHDRITVRYQTLDGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINKE 171


>gi|309807903|ref|ZP_07701833.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168852|gb|EFO70940.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a]
          Length = 184

 Score = 80.2 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + D               I             +       D +  V R+
Sbjct: 66  VGESVQVAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|225871270|ref|YP_002747217.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047]
 gi|254767601|sp|C0M9E1|DEF_STRE4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225700674|emb|CAW95260.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047]
          Length = 204

 Score = 80.2 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +              +GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99
           I V  R++ +          NP            +                +        
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 224

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 11  DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61
           D  +R  ++ +     + D+ ++     +     +  GLAA QIG+   +++        
Sbjct: 47  DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEDNCAGLAAPQIGISKCIIIFAVHEDAE 106

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                 D        ++INP       D     EGC S+ +    V R   I     D N
Sbjct: 107 LKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDIN 166

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 167 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214


>gi|169404549|pdb|2OS3|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 205

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 17  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 76

Query: 52  IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99
           I V  R++ +                     V  NPKI++ S      S  +        
Sbjct: 77  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 136

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 137 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 188


>gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 224

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 11  DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61
           D  +R  ++ +     + D+ ++     +     +  GLAA QIG+   +++        
Sbjct: 47  DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 106

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                 D        ++INP       D     EGC S+ +    V R   I     D N
Sbjct: 107 LKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDIN 166

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 167 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214


>gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5]
 gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 224

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 11  DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61
           D  +R  ++ +     + D+ N+     +     +  GLAA QIG+   +++        
Sbjct: 47  DKTIRIKAQTLNFPLSSEDLRNISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 106

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                 D        ++INP       D     E C S+ +    V R   I     D N
Sbjct: 107 LKKWHPDLKDTIPKTIWINPSYKPIGIDKHEDYEECFSVENATGPVARFKKIHYHAYDIN 166

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 167 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214


>gi|329921309|ref|ZP_08277747.1| peptide deformylase [Lactobacillus iners SPIN 1401G]
 gi|328934601|gb|EGG31105.1| peptide deformylase [Lactobacillus iners SPIN 1401G]
          Length = 184

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKQLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + D               I             +       D +  V R+
Sbjct: 66  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|195978856|ref|YP_002124100.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689838|sp|B4U576|DEF_STREM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|195975561|gb|ACG63087.1| peptide deformylase Pdf [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +              +GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99
           I V  R++ +          NP            +                +        
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|309803948|ref|ZP_07698031.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d]
 gi|308163950|gb|EFO66214.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d]
          Length = 184

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + D               I             +       D +  V R+
Sbjct: 66  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQRQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|319745793|gb|EFV98087.1| peptide deformylase [Streptococcus agalactiae ATCC 13813]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51
            ++   +P LR+V+  +    S+   ++               M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     + A    P    + + + ++     +          +       +
Sbjct: 78  LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +T+ Y D   +   +   G  +  +QHE+DH++GI+F D ++
Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189


>gi|19746868|ref|NP_608004.1| peptide deformylase [Streptococcus pyogenes MGAS8232]
 gi|25452912|sp|Q8NZB7|DEF_STRP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|19749109|gb|AAL98503.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99
           I V  R++ +                     V  NPKI++ S      S  +        
Sbjct: 78  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NGILF D ++
Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGILFYDRIN 189


>gi|325688984|gb|EGD30992.1| peptide deformylase [Streptococcus sanguinis SK115]
          Length = 210

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     D      P    + + + ++     +          +      
Sbjct: 82  PQLNISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|324992462|gb|EGC24383.1| peptide deformylase [Streptococcus sanguinis SK405]
 gi|327472415|gb|EGF17846.1| peptide deformylase [Streptococcus sanguinis SK408]
 gi|327488768|gb|EGF20567.1| peptide deformylase [Streptococcus sanguinis SK1058]
          Length = 210

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     +      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|309807220|ref|ZP_07701192.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b]
 gi|308166358|gb|EFO68565.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b]
          Length = 184

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52
           +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q+
Sbjct: 7   IVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQV 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSA 108
           G   ++  + + D               I             +       D +  V R+ 
Sbjct: 67  GESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAY 126

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 127 KLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|302191390|ref|ZP_07267644.1| peptide deformylase [Lactobacillus iners AB-1]
 gi|309809281|ref|ZP_07703150.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D]
 gi|312872368|ref|ZP_07732438.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873953|ref|ZP_07733989.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d]
 gi|312875523|ref|ZP_07735526.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b]
 gi|315653465|ref|ZP_07906386.1| peptide deformylase [Lactobacillus iners ATCC 55195]
 gi|325911485|ref|ZP_08173896.1| peptide deformylase [Lactobacillus iners UPII 143-D]
 gi|325912854|ref|ZP_08175232.1| peptide deformylase [Lactobacillus iners UPII 60-B]
 gi|308170394|gb|EFO72418.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089034|gb|EFQ47475.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b]
 gi|311090502|gb|EFQ48910.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d]
 gi|311092191|gb|EFQ50565.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1]
 gi|315489156|gb|EFU78797.1| peptide deformylase [Lactobacillus iners ATCC 55195]
 gi|325476685|gb|EGC79840.1| peptide deformylase [Lactobacillus iners UPII 143-D]
 gi|325477847|gb|EGC80981.1| peptide deformylase [Lactobacillus iners UPII 60-B]
          Length = 184

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107
           +G   ++  + + D               I             +       D +  V R+
Sbjct: 66  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|22538033|ref|NP_688884.1| peptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|25011922|ref|NP_736317.1| peptide deformylase [Streptococcus agalactiae NEM316]
 gi|76788216|ref|YP_330458.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76797863|ref|ZP_00780126.1| peptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77405647|ref|ZP_00782735.1| polypeptide deformylase [Streptococcus agalactiae H36B]
 gi|77408421|ref|ZP_00785160.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77411534|ref|ZP_00787877.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|77414207|ref|ZP_00790370.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|39930892|sp|Q8DXF6|DEF_STRA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39930894|sp|Q8E378|DEF_STRA3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123601213|sp|Q3JZ45|DEF_STRA1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563273|gb|ABA45857.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76586766|gb|EAO63261.1| peptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77159733|gb|EAO70881.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|77162388|gb|EAO73356.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|77172944|gb|EAO76074.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77175720|gb|EAO78501.1| polypeptide deformylase [Streptococcus agalactiae H36B]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51
            ++   +P LR+V+  +    S+   ++               M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     + A    P    + + + ++     +          +       +
Sbjct: 78  LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +T+ Y D   +   +   G  +  +QHE+DH++GI+F D ++
Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189


>gi|56808716|ref|ZP_00366436.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes
           M49 591]
 gi|209560096|ref|YP_002286568.1| peptide deformylase [Streptococcus pyogenes NZ131]
 gi|238058214|sp|B5XIL1|DEF_STRPZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209541297|gb|ACI61873.1| Peptide deformylase [Streptococcus pyogenes NZ131]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQNPVMAEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99
           I V  R++ +                     V  NPKI++ S      S  +        
Sbjct: 78  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|270291431|ref|ZP_06197653.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|304385144|ref|ZP_07367490.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
 gi|270280277|gb|EFA26113.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|304329338|gb|EFL96558.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
          Length = 184

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 2   VKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIG 46
           + K   +    +P+LR+ +  +   ++   + + D M+E              +   G+G
Sbjct: 1   MIKMNDITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVG 60

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRA 102
           LAA QIG+  ++  + +            +   +I             +       +   
Sbjct: 61  LAAPQIGLSIQMASVLVPGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPG 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R   IT+RY +   + + I      A   QHE+DHL G LF DH+++
Sbjct: 121 YVPRYDRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170


>gi|15829160|ref|NP_326520.1| polypeptide deformylase 2 (PDF 2) (formylmethionine deformylase 2)
           [Mycoplasma pulmonis UAB CTIP]
 gi|23396551|sp|Q98PN3|DEF_MYCPU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (FORMYLMETHIONINE DEFORMYLASE 2)
           [Mycoplasma pulmonis]
          Length = 198

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 31/185 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV--------MYSTDGIGLAAVQ 51
           M K  +V  P  +LR+ S+ +   +N   + L + M+               G+G+AAVQ
Sbjct: 4   MFKVEIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGPNTKFRPGVGVAAVQ 63

Query: 52  IGVLYRLVVIDLQDHAH---------------------RKNPMVFINPKIITFSDDFSVY 90
            G+L  +  + + + +                        NP V      +         
Sbjct: 64  YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD-GLLATCLQHELDHLNGILFIDH 149
                S P+    V+R   I V+      + ++I+   G +A   QHELDHLNG+LFID 
Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183

Query: 150 LSRLK 154
           +   +
Sbjct: 184 IDPKR 188


>gi|327460694|gb|EGF07029.1| peptide deformylase [Streptococcus sanguinis SK1]
          Length = 210

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     +      P    + + + ++     +          +      
Sbjct: 82  SQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|73666812|ref|YP_302828.1| formylmethionine deformylase [Ehrlichia canis str. Jake]
 gi|72393953|gb|AAZ68230.1| Formylmethionine deformylase [Ehrlichia canis str. Jake]
          Length = 194

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63
           L  +S PIEKI+ +I+ L ++M++VM  +  +GL+AVQ+G   R+  I++          
Sbjct: 15  LHAISHPIEKIDQEIIALANDMMKVMEDSKTVGLSAVQLGNHSRMFTINMFSGLFDVTQD 74

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                     H KN +      +   ++   +++    +      ++ R   +  RY D 
Sbjct: 75  IKVLSGHHSLHGKNMVCINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDFRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                ++   G L+ C+QHELDHLNGIL  + +  +K
Sbjct: 135 LGNKCVVRVYGWLSRCIQHELDHLNGILLANVVDNIK 171


>gi|325686575|gb|EGD28601.1| peptide deformylase [Streptococcus sanguinis SK72]
          Length = 210

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  R++ +     D      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|312863990|ref|ZP_07724226.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|322517594|ref|ZP_08070462.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
 gi|311100403|gb|EFQ58610.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|322123759|gb|EFX95337.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
          Length = 204

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M++ + ++             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     + A    P    + + I ++     +          +       D
Sbjct: 78  LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y +   + Q +   G  +  +QHE+DH NGI+F D +++
Sbjct: 138 VPGYVVRHARVTVEYYNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190


>gi|125718849|ref|YP_001035982.1| peptide deformylase [Streptococcus sanguinis SK36]
 gi|125498766|gb|ABN45432.1| Peptide deformylase, putative [Streptococcus sanguinis SK36]
 gi|324996009|gb|EGC27920.1| peptide deformylase [Streptococcus sanguinis SK678]
          Length = 210

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     D      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|328770364|gb|EGF80406.1| hypothetical protein BATDEDRAFT_88570 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 198

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59
            ++    P LR  +  +   +      + ++ +M  V  S     +GLAA QI    +L+
Sbjct: 17  EVLKAGHPFLRTKAEAVSLNDINTPAFLKIVKSMNAVFDSPLHSVLGLAAAQISHPVQLI 76

Query: 60  VIDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEG----CLSIPDYRADVKRS 107
              + D    K             +NP +       S   +     C SIP+Y   V+R+
Sbjct: 77  AYQITDTQLIKEKNLPGPVARTFIVNPVMTILDKLPSAKWKAEYEFCESIPNYSGLVRRA 136

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V     +     + A G+LA  +QHE+DH+ GILFID + R
Sbjct: 137 DHVHVTGFGLDGNSITVNAKGILARIIQHEMDHMEGILFIDKMER 181


>gi|313889599|ref|ZP_07823243.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122026|gb|EFR45121.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 204

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 27/176 (15%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGL 47
           M    ++   +P LR+ ++ +   ++ + + L + M+            E +    G+GL
Sbjct: 16  MA--DIIREGNPTLRQKAQEVALPLSDEDIILGEKMMQFLKHSQDPVMAEKLDLRGGVGL 73

Query: 48  AAVQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCL 95
           AA Q+ +  R++ +     + +    P    + + + ++     +          +    
Sbjct: 74  AAPQLDISKRVIAVLVPNMEDSEGNPPKEAYSLQEVMYNPKIVAHSVQDAALAEGEGCLS 133

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                   V R + +TV Y + + + Q I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 134 VDRLIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDHINGIMFYDRIN 189


>gi|15675756|ref|NP_269930.1| peptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21911220|ref|NP_665488.1| peptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28896598|ref|NP_802948.1| peptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50915023|ref|YP_060995.1| peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71904319|ref|YP_281122.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71911482|ref|YP_283032.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94989300|ref|YP_597401.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94991246|ref|YP_599346.1| peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|94993189|ref|YP_601288.1| peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94995159|ref|YP_603257.1| peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|139474444|ref|YP_001129160.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|306826604|ref|ZP_07459909.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
 gi|56748620|sp|Q5X9V1|DEF_STRP6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749812|sp|P68772|DEF_STRP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62901513|sp|P68771|DEF_STRP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122986892|sp|Q1J9R7|DEF_STRPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123257906|sp|Q1JEV7|DEF_STRPD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123258119|sp|Q1JJW6|DEF_STRPC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123382136|sp|Q1J4M3|DEF_STRPF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123761380|sp|Q48R93|DEF_STRPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512785|sp|A2RGI0|DEF_STRPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13622977|gb|AAK34651.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21905433|gb|AAM80291.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50904097|gb|AAT87812.1| Peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71803414|gb|AAX72767.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71854264|gb|AAZ52287.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94542808|gb|ABF32857.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94544754|gb|ABF34802.1| Peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|94546697|gb|ABF36744.1| Peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94548667|gb|ABF38713.1| Peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|134272691|emb|CAM30962.1| polypeptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|304431182|gb|EFM34186.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
          Length = 204

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99
           I V  R++ +                     V  NPKI++ S      S  +        
Sbjct: 78  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|47459452|ref|YP_016314.1| formylmethionine deformylase [Mycoplasma mobile 163K]
 gi|47458782|gb|AAT28103.1| formylmethionine deformylase [Mycoplasma mobile 163K]
          Length = 184

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQIGVL 55
            L+  P+ ILR+ S  I   ++ + + L   M+  + ++         G+G+AAVQ G+L
Sbjct: 7   KLIELPNKILRQKSLDINLPLSHEDIELAKKMIYHIKNSQSKNTIFRPGVGVAAVQYGIL 66

Query: 56  YRLVVIDLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            ++  + + D  +         NP V                       P+    VKRS 
Sbjct: 67  KQMFYVYITDEDNKVVFEDLMINPKVLAKSTSKIALRTGEGCLSVNEEHPNQEGYVKRSK 126

Query: 109 FITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            I V+      + +     +G  A   QHELDHLNG LFIDH+ +     I K + 
Sbjct: 127 RIVVKGYSYFKKEEVTHDLNGYPAIVFQHELDHLNGKLFIDHIDKENNWFIEKDLE 182


>gi|322374579|ref|ZP_08049093.1| peptide deformylase [Streptococcus sp. C300]
 gi|321280079|gb|EFX57118.1| peptide deformylase [Streptococcus sp. C300]
          Length = 203

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRVIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188


>gi|228476502|ref|ZP_04061192.1| peptide deformylase [Streptococcus salivarius SK126]
 gi|228251923|gb|EEK10969.1| peptide deformylase [Streptococcus salivarius SK126]
          Length = 204

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M++ + ++             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     + A    P    + + I ++     +          +       D
Sbjct: 78  LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y +   + Q +   G  +  +QHE+DH NGI+F D +++
Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190


>gi|55820249|ref|YP_138691.1| peptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55822139|ref|YP_140580.1| peptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|116627103|ref|YP_819722.1| peptide deformylase [Streptococcus thermophilus LMD-9]
 gi|81676625|sp|Q5M1R9|DEF_STRT1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81676774|sp|Q5M6B0|DEF_STRT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122268294|sp|Q03MP6|DEF_STRTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|55736234|gb|AAV59876.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55738124|gb|AAV61765.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|116100380|gb|ABJ65526.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus
           LMD-9]
 gi|312277572|gb|ADQ62229.1| Peptide deformylase [Streptococcus thermophilus ND03]
          Length = 204

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M++ + ++             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------ 100
           + +  R++ +     +       K                 SV +    +          
Sbjct: 78  LDISKRIIAVLVPNPEDAKGNPPKEAYSLQEIMYNPKVVAHSVQEAALGNGEGCLSVDRD 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +T+ Y +   + + I   G  +  +QHE+DH NGI+F D +++
Sbjct: 138 VPGYVVRHARVTIEYFNKEGEKKRIKLRGYDSIVVQHEIDHTNGIMFYDRINK 190


>gi|327462775|gb|EGF09097.1| peptide deformylase [Streptococcus sanguinis SK1057]
          Length = 210

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     D      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|66806299|ref|XP_636872.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4]
 gi|60465273|gb|EAL63366.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4]
          Length = 243

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 55/204 (26%)

Query: 4   KPLVIFPDPILRRVSRPI--EKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           K +V   + +LR  + P   E++N    +  L++ M + M    G G+AA QIGV  +L 
Sbjct: 8   KNIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLF 67

Query: 60  VIDLQDHAHRKNPMV--------------------------------------------- 74
           +++L        P                                               
Sbjct: 68  LLELPSQEGLNCPNFPLTAFFNPKIKLIDQDVTKPSRRTITDFKKFLHGSEKLLNLSQYK 127

Query: 75  ------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                       I   ++     E CLS+P+  A V+RS    + ++D   + +II ADG
Sbjct: 128 TKFQTEESTLPTIPTENNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADG 187

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           +LA C QHE DHL G +FID + +
Sbjct: 188 ILAACFQHEYDHLLGKIFIDRIDK 211


>gi|322373777|ref|ZP_08048312.1| peptide deformylase [Streptococcus sp. C150]
 gi|321277149|gb|EFX54219.1| peptide deformylase [Streptococcus sp. C150]
          Length = 204

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M++ + ++             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPIIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     + A    P    + + I ++     +          +       D
Sbjct: 78  LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGEGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y +   + + I   G  +  +QHE+DH NGI+F DH+++
Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKKRIKFRGYNSIVVQHEIDHTNGIMFYDHINK 190


>gi|23396567|sp|Q92JI7|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
          Length = 202

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 11  DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61
           D  +R  ++ +     + D+ ++     +     +  GLAA QIG+   +++        
Sbjct: 25  DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 84

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                 D        ++INP       D     EGC S+ +    V R   I     D N
Sbjct: 85  LKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDIN 144

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 145 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 192


>gi|306832702|ref|ZP_07465839.1| peptide deformylase [Streptococcus bovis ATCC 700338]
 gi|304425158|gb|EFM28287.1| peptide deformylase [Streptococcus bovis ATCC 700338]
          Length = 204

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 26/182 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           + +  R++ +     + +D    K+                SV        +        
Sbjct: 78  LDISKRIIAVLVPNPEDKDGNPPKDAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +TV Y D N +   I   G  +  +QHE+DH NGI+F D +   K     
Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRID-EKNPFAI 196

Query: 160 KK 161
           KK
Sbjct: 197 KK 198


>gi|307702174|ref|ZP_07639134.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307624187|gb|EFO03164.1| peptide deformylase [Streptococcus oralis ATCC 35037]
          Length = 203

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188


>gi|229821583|ref|YP_002883109.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 217

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 3   KKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V    P+LR  +     E        L++ M   M +  G+GLAA QIG+   + V
Sbjct: 18  VLPIVSAGAPVLRAPAARYGGELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIAV 77

Query: 61  IDLQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           I+                     V +NP       +   + EGCLS+P Y A   R   +
Sbjct: 78  IEDPGVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWRRV 137

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +   D           G  A  +QHE+DHL G L++D
Sbjct: 138 RLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLD 175


>gi|322388152|ref|ZP_08061756.1| peptide deformylase [Streptococcus infantis ATCC 700779]
 gi|321140824|gb|EFX36325.1| peptide deformylase [Streptococcus infantis ATCC 700779]
          Length = 203

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + +     M E +    G+GLAA
Sbjct: 16  MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
            Q+ +  R++ +      ++    +                 SV        +       
Sbjct: 76  PQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDR 135

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                V R A +TV Y D + +   I   G  +  +QHE+DHLNG++F D ++
Sbjct: 136 TVPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGVMFYDRIN 188


>gi|309798501|ref|ZP_07692783.1| peptide deformylase [Streptococcus infantis SK1302]
 gi|308117873|gb|EFO55267.1| peptide deformylase [Streptococcus infantis SK1302]
          Length = 203

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + +     M E +    G+GLAA
Sbjct: 16  MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
            Q+ +  R++ +      ++    +                 SV        +       
Sbjct: 76  PQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDR 135

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 136 AVPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188


>gi|193216926|ref|YP_002000168.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1]
 gi|193002249|gb|ACF07464.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1]
          Length = 185

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQIGVLY 56
           L+  P+  LR+ S  I   +  +  +LI  M+        +       +G+AAVQ G+L 
Sbjct: 9   LIELPNKTLRQKSNDITLPLTKEDEDLIQKMIFHVDDSQEKETKFRPAVGVAAVQYGILK 68

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRAD----VKRSA 108
            +  I L+D  +       +    +    +        +       +         + + 
Sbjct: 69  NVFYILLKDENNEVLFKDALINPQMVAHSEHKLALDEGEGCLSVNQNDPGQAGYVPRYAR 128

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            +   Y     + +     G LA   QHE DHL G LFIDHL++ +
Sbjct: 129 VVMKAYSYYEKKEKTYDVSGYLAIIFQHEYDHLFGKLFIDHLNKKE 174


>gi|46446175|ref|YP_007540.1| putative peptide deformylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399816|emb|CAF23265.1| putative Peptide deformylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 156

 Score = 78.7 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINP 78
           I+  +  LI +M+E M++  GIGLAA Q+     L V  +               VFINP
Sbjct: 4   IDDALKQLIYDMVETMHTMKGIGLAAPQVHHSISLFVTCVPVKNKNGLWESGKDRVFINP 63

Query: 79  KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138
           +I++ S++   + EGCLSIP+   +V R A ITV+ +D           GL AT   HE 
Sbjct: 64  QILSMSEETQTFSEGCLSIPNLHMNVTRPAKITVQAVDLEGNLFEEIFTGLQATNFMHEY 123

Query: 139 DHLNGILFIDHLSRLKRDMITK 160
           DHLNGIL ID+ S  +R  + +
Sbjct: 124 DHLNGILIIDYYSLEERKSLEQ 145


>gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5]
          Length = 229

 Score = 78.7 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 5/144 (3%)

Query: 14  LRRVSRPI--EKINSDIMNLIDN-MLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           LRR + P+  E++ S+   L+   ML  +     +G+G+AA Q+GV  RL+ +   D   
Sbjct: 84  LRRKAAPLGAEELRSEYFRLLKQGMLLTVRDPADEGVGIAAPQVGVSRRLIAVQRFDKPG 143

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                      +   +   +  +            ++    +     +   +      +G
Sbjct: 144 EPFECYVNPEIVGRSAARTAGREGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDTVEG 203

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
             A   QHE+DHL+G+LFID + R
Sbjct: 204 FTAVIFQHEIDHLDGVLFIDRMQR 227


>gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis]
 gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis]
          Length = 192

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 24/185 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +    DP+LR  +  ++     + D   ++D +++VM S DG G+AA QIGV  +++ +
Sbjct: 10  KIRQVGDPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAM 69

Query: 62  DLQDHAHRKNPMV-------------------FINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +      +K                       FINPK+   +     ++E CLS+  + A
Sbjct: 70  EYTGKHMKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHSA 129

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            V R + + V  +D NA      A G  A  LQHE+DHL G L++D  S L +  +    
Sbjct: 130 VVPRMSEVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVD--SMLYKTFMNNNW 187

Query: 163 SKLVQ 167
            K  +
Sbjct: 188 QKYAK 192


>gi|284033559|ref|YP_003383490.1| formylmethionine deformylase [Kribbella flavida DSM 17836]
 gi|283812852|gb|ADB34691.1| formylmethionine deformylase [Kribbella flavida DSM 17836]
          Length = 162

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV--IDL 63
           V  P P+L      ++ ++  ++ L  +++  M  +   +GLAA Q+GV  ++    +  
Sbjct: 2   VRAPHPVLATEGAEVDPLDPVMLALAADLVATMRISPGCVGLAAPQVGVAAQMFALDVTG 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                  + +  +   ++  +      +EGC+S+PD   DVKR+  +TV  +       +
Sbjct: 62  HPKTRTCHGVFVLCNAVVVEATRKEKAREGCMSVPDLTGDVKRATRLTVTGVLPGTTDVV 121

Query: 124 IYADGLL-ATCLQHELDHLNGILFIDHL 150
                   A  +QHE+DH NG LF+D +
Sbjct: 122 TLTTDAFEARAVQHEIDHCNGSLFLDRV 149


>gi|324989743|gb|EGC21686.1| peptide deformylase [Streptococcus sanguinis SK353]
 gi|327468374|gb|EGF13859.1| peptide deformylase [Streptococcus sanguinis SK330]
          Length = 210

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     +      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|300173110|ref|YP_003772276.1| peptide deformylase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887489|emb|CBL91457.1| Peptide deformylase [Leuconostoc gasicomitatum LMG 18811]
          Length = 192

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +      +LR+ +  +   ++ +   L  +M+            E      
Sbjct: 1   MTIRFTMDKITRDGASVLRKTAASVPFPLSEEHAQLAKDMMTYLVISQDESQNEQYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQEGC 94
           G+GLAA Q+    R+  I        +            NP II+         V +   
Sbjct: 61  GVGLAAPQVNYSLRMASILVPSLDPHESDETPYFKGTIFNPTIISESIKRGALDVGEGCL 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               D    V R+  ITVRY D     +II      A   QHE+DHL+G L+ DH+ 
Sbjct: 121 SVDKDVPGFVPRADRITVRYQDETGATKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177


>gi|301103913|ref|XP_002901042.1| peptide deformylase, putative [Phytophthora infestans T30-4]
 gi|262101380|gb|EEY59432.1| peptide deformylase, putative [Phytophthora infestans T30-4]
          Length = 210

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    LV   +  LRRVS+ +  +    +  L++++ + +    G+G+AA Q+    R+ 
Sbjct: 1   MT---LVFLGNSALRRVSKSVADVRAPAVRRLLEDLDKEVRLEAGVGIAAPQLAHNLRMF 57

Query: 60  VID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++       +D   +      +NPKI+  S       EGCLS+P Y+  ++R+  I V+Y
Sbjct: 58  LMIKDMPENEDDLSKLEYQEVLNPKIVAMSKSSKRDFEGCLSVPGYQGIIERAEEIRVQY 117

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D   +          A   QHELDHLNG++++D L 
Sbjct: 118 QDAEGRKIQETLTDFPARIFQHELDHLNGVMYLDRLE 154


>gi|162448037|ref|YP_001621169.1| peptide deformylase [Acholeplasma laidlawii PG-8A]
 gi|161986144|gb|ABX81793.1| peptide deformylase [Acholeplasma laidlawii PG-8A]
          Length = 192

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 21/168 (12%)

Query: 6   LVIFPDPILRRVSRPI----EKINSDI-MNLI--------DNMLEVMYSTDGIGLAAVQI 52
           ++    P L   S+P+     + + D+  +LI        D M++       +GLAA QI
Sbjct: 4   IIREGHPSLTTPSKPVLLPLSQKDIDLGKSLIEYVKNSQDDAMVKKHRLRPSVGLAAPQI 63

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109
             L R+  + ++D        V INP+I+  + + +     +              R   
Sbjct: 64  NELKRMFAMHVEDMDGTLYSYVMINPEIVGHTHEETYLPGGEGCLSVDRATSGLTPRYYG 123

Query: 110 ITVRYMDCNA-----QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           I VR    +      +   +  +G  A   QHE DHL+GI+F   L  
Sbjct: 124 IMVRGYHLDFESLTAKPIELTLEGYPAIVFQHEYDHLDGIMFTSKLYP 171


>gi|296877265|ref|ZP_06901305.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|312867979|ref|ZP_07728183.1| peptide deformylase [Streptococcus parasanguinis F0405]
 gi|296431785|gb|EFH17592.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|311096383|gb|EFQ54623.1| peptide deformylase [Streptococcus parasanguinis F0405]
          Length = 204

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           + +  R++ +     +  D    K                 SV        +       +
Sbjct: 78  LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y   + + + I   G  +  +QHE+DH NGI+F D ++ 
Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINP 190


>gi|323350520|ref|ZP_08086182.1| peptide deformylase [Streptococcus sanguinis VMC66]
 gi|322123202|gb|EFX94887.1| peptide deformylase [Streptococcus sanguinis VMC66]
          Length = 210

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     +      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRLIAVLVPNPEDEEGSPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
 gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
          Length = 179

 Score = 78.3 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE----KINSDIMNLI---------DNMLEVMYSTDGIGLAAVQ 51
            +V    P L   S  +     + + + M L+         D + E      GIGLAA Q
Sbjct: 6   EIVREDVPSLHERSVDVTFPLSEEDKETMRLMMEYLANSQDDELAEKYDLRSGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAF 109
           IGV  R+  I LQD        ++    +         +  +       +    V R   
Sbjct: 66  IGVNKRMFAIRLQDGDDILEFGIYNPKIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYMR 125

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           IT+  +D N     +   GL A   QHE DHL+GI+F D +   +
Sbjct: 126 ITLSGIDHNGNPVKLRLKGLKAVVCQHEYDHLDGIMFYDRIDPKE 170


>gi|322390858|ref|ZP_08064367.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
 gi|321142443|gb|EFX37912.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
          Length = 204

 Score = 78.3 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPIMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           + +  R++ +     +  D    K                 SV        +       +
Sbjct: 78  LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y   + + + I   G  +  +QHE+DH NGI+F D ++ 
Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINP 190


>gi|288904432|ref|YP_003429653.1| polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|306830465|ref|ZP_07463635.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977428|ref|YP_004287144.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731157|emb|CBI12705.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|304427490|gb|EFM30592.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177356|emb|CBZ47400.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 204

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           + +  R++ +     + +D    K                 SV        +        
Sbjct: 78  LDISKRIIAVLVPNPEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +TV Y D N +   I   G  +  +QHE+DH NGI+F D + 
Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRID 189


>gi|293365121|ref|ZP_06611838.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|291316571|gb|EFE57007.1| peptide deformylase [Streptococcus oralis ATCC 35037]
          Length = 208

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 193


>gi|126641011|ref|YP_001083995.1| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978]
          Length = 122

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 5/122 (4%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSV 89
           M   M   +G+G+AA Q+ +  R++++          A   N +V +NP+I+ FS +  +
Sbjct: 1   MHATMLERNGVGIAAPQVYISKRIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCL 60

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +EGCLS+PD R  V+R+  + V+Y+    +       G  A  +QHE+DHLNGILF++ 
Sbjct: 61  GEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER 120

Query: 150 LS 151
           +S
Sbjct: 121 IS 122


>gi|157825792|ref|YP_001493512.1| polypeptide deformylase [Rickettsia akari str. Hartford]
 gi|157799750|gb|ABV75004.1| Polypeptide deformylase [Rickettsia akari str. Hartford]
          Length = 129

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            +G+L R+ +++L ++     P+V INP+I  FS+    + E  LS P   A + RS  I
Sbjct: 1   MVGILKRIAIVELHENNKSS-PIVLINPEITYFSEAKQTFIECSLSFPGIEASITRSKVI 59

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            V+Y+D +   Q + A+G LAT +QH++D+LNG  F+D+LS+LKRDM+ KKM K ++L
Sbjct: 60  KVKYLDYDGNKQELDAEGFLATVIQHKIDYLNGKTFLDYLSKLKRDMLLKKMLKHIKL 117


>gi|320547748|ref|ZP_08042032.1| peptide deformylase [Streptococcus equinus ATCC 9812]
 gi|320447508|gb|EFW88267.1| peptide deformylase [Streptococcus equinus ATCC 9812]
          Length = 204

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR+V   +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVCDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + V  R++ +     +      P    + + + ++     +          +        
Sbjct: 78  LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +TV Y + N +   +   G  +  +QHE+DH NGI+F D + 
Sbjct: 138 VEGYVVRHSRVTVEYFNKNGEKHRVKLKGYNSIVVQHEIDHTNGIMFYDRID 189


>gi|283768843|ref|ZP_06341754.1| peptide deformylase [Bulleidia extructa W1219]
 gi|283104629|gb|EFC06002.1| peptide deformylase [Bulleidia extructa W1219]
          Length = 188

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 23/176 (13%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52
           +V   +PI+R  S+ ++  ++ +  +L+ +ML+                   +G++A+Q+
Sbjct: 8   IVKDNNPIIRTKSKEVKLPLSEEDASLLRDMLKYVQDSTDEEKAKKYNLRPAVGISAIQV 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVK 105
           G+  R++ + + D     NP+ +            S         +     + D+   V 
Sbjct: 68  GIPKRMMAVVVDDIDKNGNPIHYEYMLANAKIVSESAQPAYLSSGEGCLSVVQDHPGYVI 127

Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           R A +TV   D      + I A G LA  LQHELDH +G LF D +   K++ + K
Sbjct: 128 RKARVTVEAYDLITDSMVSIRARGYLAIVLQHELDHFDGHLFYDRID--KKNPLKK 181


>gi|68171495|ref|ZP_00544878.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657592|ref|YP_507728.1| putative polypeptide deformylase [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999078|gb|EAM85746.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599049|gb|ABD44518.1| putative polypeptide deformylase [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 194

 Score = 77.9 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 16/157 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63
           L  +S PIEKI+ +I+ L ++M++VM  +  +GL+AVQ+G   R+ +I++          
Sbjct: 15  LHAISHPIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQD 74

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                     H KN +      +   ++   +++    +      ++ R   + +RY D 
Sbjct: 75  IKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                I+   G L+ C+QHELDHLNGIL  + +  +K
Sbjct: 135 LGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIK 171


>gi|15903353|ref|NP_358903.1| peptide deformylase [Streptococcus pneumoniae R6]
 gi|116516110|ref|YP_816751.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|148984798|ref|ZP_01818051.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|148992660|ref|ZP_01822328.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|148997485|ref|ZP_01825090.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|149002851|ref|ZP_01827777.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|149019400|ref|ZP_01834762.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168483932|ref|ZP_02708884.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|168489617|ref|ZP_02713816.1| peptide deformylase [Streptococcus pneumoniae SP195]
 gi|168493357|ref|ZP_02717500.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|168575913|ref|ZP_02721828.1| peptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|169833382|ref|YP_001694872.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|182684413|ref|YP_001836160.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|221232181|ref|YP_002511334.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854897|ref|YP_002736409.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|225859217|ref|YP_002740727.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|237651106|ref|ZP_04525358.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974]
 gi|237821019|ref|ZP_04596864.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254384|ref|ZP_07340491.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|303259052|ref|ZP_07345031.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|303261732|ref|ZP_07347679.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264405|ref|ZP_07350325.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|303267527|ref|ZP_07353375.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|303269331|ref|ZP_07355104.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|307068106|ref|YP_003877072.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|39930890|sp|Q8DP79|DEF_STRR6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122278363|sp|Q04JP7|DEF_STRP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688366|sp|B1ICN7|DEF_STRPI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691170|sp|B2IQS1|DEF_STRPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767602|sp|C1C851|DEF_STRP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767603|sp|B8ZL02|DEF_STRPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767605|sp|C1CF38|DEF_STRZJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15458954|gb|AAL00114.1| Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase
           [Streptococcus pneumoniae R6]
 gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus pneumoniae]
 gi|116076686|gb|ABJ54406.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|147756540|gb|EDK63581.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|147759145|gb|EDK66139.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|147922820|gb|EDK73936.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|147928677|gb|EDK79691.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|147931270|gb|EDK82249.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168995884|gb|ACA36496.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|172042804|gb|EDT50850.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|182629747|gb|ACB90695.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|183571999|gb|EDT92527.1| peptide deformylase [Streptococcus pneumoniae SP195]
 gi|183576731|gb|EDT97259.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|183578335|gb|EDT98863.1| peptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|220674642|emb|CAR69211.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225721908|gb|ACO17762.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|225722966|gb|ACO18819.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|301800306|emb|CBW32932.1| polypeptide deformylase [Streptococcus pneumoniae OXC141]
 gi|301802184|emb|CBW34930.1| polypeptide deformylase [Streptococcus pneumoniae INV200]
 gi|302598631|gb|EFL65670.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|302637312|gb|EFL67800.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|302639995|gb|EFL70451.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|302641161|gb|EFL71535.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|302642928|gb|EFL73227.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|302646217|gb|EFL76444.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|306409643|gb|ADM85070.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|332073763|gb|EGI84242.1| peptide deformylase [Streptococcus pneumoniae GA17570]
 gi|332073793|gb|EGI84271.1| peptide deformylase [Streptococcus pneumoniae GA41301]
          Length = 203

 Score = 77.9 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|315612890|ref|ZP_07887801.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
 gi|315315000|gb|EFU63041.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
          Length = 208

 Score = 77.9 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 143 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 193


>gi|307706823|ref|ZP_07643628.1| peptide deformylase [Streptococcus mitis SK321]
 gi|307617908|gb|EFN97070.1| peptide deformylase [Streptococcus mitis SK321]
          Length = 203

 Score = 77.9 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 24/173 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA
Sbjct: 16  MKDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
            Q+ +  R++ +     +++    +                 SV        +       
Sbjct: 76  PQLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDR 135

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +    V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 136 NVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|325697445|gb|EGD39331.1| peptide deformylase [Streptococcus sanguinis SK160]
          Length = 210

 Score = 77.9 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAA 49
            K ++   +P LR ++  +   ++   + L + M++ +  +             G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  RL+ +     D      P    + + + ++     +          +      
Sbjct: 82  PQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|218283087|ref|ZP_03489182.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989]
 gi|218216156|gb|EEC89694.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989]
          Length = 186

 Score = 77.9 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +++  D  +R  S P+   ++++   L+  ML+ + ++              +G+A
Sbjct: 7   TSKDIILDTDERIRMQSEPVSLPLSNEDKELLQAMLDYVRNSQDDEIAKAEGLQPAVGIA 66

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--FSDDFSVYQEGCLSIPDYRADVKR 106
           AVQ+GVL +++ + +          +     I     +      +       ++   V R
Sbjct: 67  AVQVGVLKQMIAVVIPYEDGVDEVALVNPKIISESVQNAYLDNGEGCLSVKGEHPGHVFR 126

Query: 107 SAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A I VR  D    ++  I A+G  A CLQHE+DHL+G LF DH+ 
Sbjct: 127 HARIKVRGYDLIQDKNVTISAEGYFAICLQHEIDHLSGTLFYDHID 172


>gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens]
          Length = 225

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 2/144 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +V +P P LR  +  +   +      +   M ++MY+  G+GLAA Q+GV  RL+V +  
Sbjct: 54  IVAYPHPALRARNGDLAPGDLAAAAPLAARMFDLMYAAGGVGLAAPQVGVNARLMVFNPS 113

Query: 65  -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A   + +   NP+I+  S +  V  EGCLS P     V R A++ V  +D   +   
Sbjct: 114 GDAARTGDEVALANPRIVAASAELEVGDEGCLSFPGMGGPVARHAWVEVAGLDLEGRAIS 173

Query: 124 IYADGLLATCLQHELDHLNGILFI 147
               G  A   QHE DHL+G++++
Sbjct: 174 RAYAGWDARVFQHEYDHLDGVVYV 197


>gi|307702002|ref|ZP_07639010.1| peptide deformylase [Streptococcus mitis NCTC 12261]
 gi|307616647|gb|EFN95836.1| peptide deformylase [Streptococcus mitis NCTC 12261]
          Length = 203

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 24/173 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA
Sbjct: 16  MKDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
            Q+ +  R++ +     +++    +                 SV        +       
Sbjct: 76  PQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDR 135

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +    V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 136 NVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|270293023|ref|ZP_06199234.1| peptide deformylase [Streptococcus sp. M143]
 gi|270279002|gb|EFA24848.1| peptide deformylase [Streptococcus sp. M143]
          Length = 203

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +         
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRVV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188


>gi|331266683|ref|YP_004326313.1| peptide deformylase [Streptococcus oralis Uo5]
 gi|326683355|emb|CBZ00973.1| peptide deformylase [Streptococcus oralis Uo5]
          Length = 203

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRVIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188


>gi|300768287|ref|ZP_07078192.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494351|gb|EFK29514.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 186

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 19/168 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49
            + ++   +  LR  ++ ++  ++     L ++M+E + ++              +GLAA
Sbjct: 4   MRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQNPELAKKYGLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103
            Q+ V  ++  + +        P+                       +       D    
Sbjct: 64  PQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   IT+RY +   + + I      A   QHE+DHL+GILF DH++
Sbjct: 124 VIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|171778809|ref|ZP_02919871.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282455|gb|EDT47879.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 204

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR++   +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRKICDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + V  R++ +     +      P    + + + ++     +          +        
Sbjct: 78  LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +TV Y D N +   I   G  +  +QHE+DH NGI+F D ++
Sbjct: 138 VEGYVVRHSRVTVEYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIN 189


>gi|328944870|gb|EGG39030.1| peptide deformylase [Streptococcus sanguinis SK1087]
          Length = 210

 Score = 77.5 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA
Sbjct: 22  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81

Query: 50  VQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSI 97
            Q+ +  RL+ +     + ++    K                 SV        +      
Sbjct: 82  PQLDISKRLIAVLVPNPEDEEGNPTKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195


>gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104]
 gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104]
          Length = 177

 Score = 77.5 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 26  SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV-------FINP 78
           +D++ LI +M + M +  G+GLAA QIGV  R+ V D  D                    
Sbjct: 11  ADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVVVNPVLETS 70

Query: 79  KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138
           +I     D     EGCLS+P       R+++  V  +D +     I   GL A  LQHE 
Sbjct: 71  EIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLFARMLQHET 130

Query: 139 DHLNGILFIDHL 150
            HL+G L++D L
Sbjct: 131 GHLDGFLYLDRL 142


>gi|226199013|ref|ZP_03794576.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|225929113|gb|EEH25137.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
          Length = 131

 Score = 77.5 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNA 119
           D   
Sbjct: 121 DQYG 124


>gi|308180961|ref|YP_003925089.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046452|gb|ADN98995.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 186

 Score = 77.5 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49
            + ++   +  LR  ++ +   ++     L ++M+E + ++              +GLAA
Sbjct: 4   MRDIIREGNHTLRAEAKQVNFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103
            Q+ V  ++  + +        P+                       +       D    
Sbjct: 64  PQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   IT+RY +   + + I      A   QHE+DHL+GILF DH++
Sbjct: 124 VIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|306825519|ref|ZP_07458859.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432457|gb|EFM35433.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 208

 Score = 77.5 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + N     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +         
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRVV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 193


>gi|28378768|ref|NP_785660.1| peptide deformylase [Lactobacillus plantarum WCFS1]
 gi|254556973|ref|YP_003063390.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|38257321|sp|Q88VB2|DEF_LACPL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28271605|emb|CAD64511.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1]
 gi|254045900|gb|ACT62693.1| peptide deformylase [Lactobacillus plantarum JDM1]
          Length = 186

 Score = 77.5 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 19/168 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49
            + ++   +  LR  ++ ++  ++     L ++M+E + ++              +GLAA
Sbjct: 4   MRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAA 63

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103
            Q+ V  ++  + +        P+                       +       D    
Sbjct: 64  PQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGY 123

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   IT+RY +   + + I      A   QHE+DHL+GILF DH++
Sbjct: 124 VIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|269114884|ref|YP_003302647.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis]
 gi|268322509|emb|CAX37244.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis
           ATCC 23114]
          Length = 185

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV--------MYSTDGIGLAAVQIGVL 55
            LV  P+ +LR  S+ +E  + ++   LI  M+                +G+AAVQ G+L
Sbjct: 8   KLVQLPEKVLRNKSKNVELPLTAEDDLLIQKMIFHVDDSQTPQTKFRPAVGVAAVQYGIL 67

Query: 56  YRLVVIDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
             +  + ++D  +         NP++  +        +         S       V R +
Sbjct: 68  KNIFYVMVKDDQNNYIFRDALINPIMLSHSNHKISLQEGEGCLSVKESDAGQEGFVYRYS 127

Query: 109 FITVRYMDCNAQHQII-YADGLLATCLQHELDHLNGILFIDHLSRLK 154
            + ++      + + I    G  A  LQHE DHL G LFID +++ +
Sbjct: 128 RVVIKAYSYFEKKEKIYDVSGYPAIVLQHEYDHLQGKLFIDRINKNQ 174


>gi|75766232|pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
           485345
 gi|75766238|pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668
          Length = 203

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|163751756|ref|ZP_02158973.1| peptide deformylase [Shewanella benthica KT99]
 gi|161328320|gb|EDP99480.1| peptide deformylase [Shewanella benthica KT99]
          Length = 114

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +EGCLSIP YRA V RS  +TV+ +D   +   I  D  LA  LQHE+DHL GI+F DHL
Sbjct: 39  EEGCLSIPGYRAKVARSEQVTVKALDRTGKPFDIETDTFLAIVLQHEIDHLQGIVFTDHL 98

Query: 151 SRLKRDMITKKMSKLV 166
           S+LK+ +  KK+ K  
Sbjct: 99  SKLKQQIALKKVKKYA 114


>gi|289645164|ref|ZP_06477181.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca
           glomerata]
 gi|289505026|gb|EFD26107.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca
           glomerata]
          Length = 529

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 13/161 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQ 51
           M    +V     IL + +RP +             ++ + I+ +  +     G+G+AA Q
Sbjct: 351 MAAVGIVQQGAEILSKPARPFDLPAEAEDARRVVAELSSAIERVSALHTFGKGMGIAAPQ 410

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+     ++   D          +NP +I  S +     EGCLS  D R  V R   + 
Sbjct: 411 VGINRAAAIVRTVDGDTIT----LLNPTVIEASPETDEQYEGCLSFFDVRGLVPRPLTLH 466

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V + D +   +II  +  LA  + HE+DHL+G L+ D +  
Sbjct: 467 VEHADIDGTRRIIAFEKGLARLVAHEIDHLDGHLYTDKMRP 507


>gi|157150181|ref|YP_001449640.1| peptide deformylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083079|sp|A8AV30|DEF_STRGC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157074975|gb|ABV09658.1| polypeptide deformylase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 204

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            + ++   +P LR V+  +          +   +M  + N     M E +    G+GLAA
Sbjct: 16  MRDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  R++ +     +  +  +P      K + ++     +          +      
Sbjct: 76  PQLDISRRIIAVLLPNPEDENGNSPQEAYALKEVMYNPKIVAHSVQDAALADGEGCLSVD 135

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D    V R A +TV Y D N +   +   G  A  +QHE+DH+NGI+F D ++
Sbjct: 136 RDVPGYVVRHARVTVDYFDKNGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRIN 189


>gi|289168210|ref|YP_003446479.1| peptide deformylase [Streptococcus mitis B6]
 gi|307704979|ref|ZP_07641866.1| peptide deformylase [Streptococcus mitis SK597]
 gi|322376907|ref|ZP_08051400.1| peptide deformylase [Streptococcus sp. M334]
 gi|288907777|emb|CBJ22617.1| peptide deformylase [Streptococcus mitis B6]
 gi|307621430|gb|EFO00480.1| peptide deformylase [Streptococcus mitis SK597]
 gi|321282714|gb|EFX59721.1| peptide deformylase [Streptococcus sp. M334]
          Length = 203

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b]
          Length = 200

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 13/164 (7%)

Query: 2   VKKPLVI----FPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           +   ++         +L+  +  I+  +N +  +LI+ M + +Y+  G+GLAA Q+    
Sbjct: 1   MALEIITIEKTENHHMLKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAK 60

Query: 57  RLVVIDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +++ + + + A             ++                 EGC S+      V R  
Sbjct: 61  QIIAVYIPEEAQLLRDNAKIFPMHILINPSYEPLPHTRIISDFEGCYSVSSKAGKVPRYD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I ++Y D          +G  A  LQHE+DHLNG+L  D L+ 
Sbjct: 121 EIRLKYYDEEGNAHQQIENGFYARVLQHEIDHLNGVLITDRLTP 164


>gi|75766239|pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
           505684
          Length = 203

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|221120519|ref|XP_002163626.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 196

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            L    DP+LR+V+R +        D  +LI  M+ +M S  G G+AA Q+GV  +++ I
Sbjct: 22  KLRQNGDPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAI 81

Query: 62  DLQDH------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +  +H                         +FINPK+   + + + ++EGCLSI      
Sbjct: 82  EFTEHDLEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTRFEEGCLSILGTVGV 141

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           V+R   + + +++    + ++  DG LA  +QHE+ HL G L +D
Sbjct: 142 VQRYREVQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186


>gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From
           Streptococcus Pneumoniae
          Length = 215

 Score = 77.1 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 30  DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 89

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 90  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGXLSVDRNV 149

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 150 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 200


>gi|307709244|ref|ZP_07645702.1| peptide deformylase [Streptococcus mitis SK564]
 gi|307619827|gb|EFN98945.1| peptide deformylase [Streptococcus mitis SK564]
          Length = 203

 Score = 76.7 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|319946246|ref|ZP_08020486.1| peptide deformylase [Streptococcus australis ATCC 700641]
 gi|319747628|gb|EFV99881.1| peptide deformylase [Streptococcus australis ATCC 700641]
          Length = 204

 Score = 76.7 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR ++  +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGHPTLRAIAEEVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     +      P    + + + ++     +          +       +
Sbjct: 78  LDISKRIIAVLVPNPEDEEGNPPKEAYSIQEVMYNPKIVSHSVQDAALGDGEGCLSVDRN 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  +  +QHE+DH+NG++F D ++ 
Sbjct: 138 VPGYVVRHARVTVDYYDKTGEKHRIKLKGYNSIVVQHEIDHINGVMFYDRINP 190


>gi|60117243|gb|AAX14403.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           mojavensis]
          Length = 134

 Score = 76.7 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 8/133 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIY 125
           +Y D + + Q + 
Sbjct: 121 KYKDLDNEEQTLK 133


>gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
 gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
          Length = 229

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-------D 65
           L+  +  I+  +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + +        D
Sbjct: 46  LKTRAENIQFPLNREDQDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 105

Query: 66  HAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +A      + INP          +   EGC S+      V R   I ++Y D        
Sbjct: 106 NAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 165

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
             +G  A  LQHE+DHLNG+L  D L+ 
Sbjct: 166 IENGFYARVLQHEIDHLNGVLITDRLTP 193


>gi|302870584|ref|YP_003839221.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315506821|ref|YP_004085708.1| transcriptional regulator, xre family [Micromonospora sp. L5]
 gi|302573443|gb|ADL49645.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315413440|gb|ADU11557.1| transcriptional regulator, XRE family [Micromonospora sp. L5]
          Length = 510

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSD---------IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           +V   D +LR+ +R  +    +         +  ++  + E+   + G+GLAA Q+G+ +
Sbjct: 338 IVQRGDDLLRQRARQFDLPADEQHARQVIDRLAAMLVRLDELHPFSKGVGLAAPQLGIGW 397

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              ++   D     +P+V +NP+++  + +     EGCLS  D+R  V R   I V +  
Sbjct: 398 SAALVRPAD--RAADPVVLLNPRVVDAATETDEQYEGCLSFFDHRGLVPRPLRIDVEHAL 455

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 456 WDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 491


>gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 237

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 13/164 (7%)

Query: 2   VKKPLVI----FPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           +   ++         +L+  +  I+  ++ +  +LI+ M + +Y+  G+GLAA Q+    
Sbjct: 38  MSLEIITIEKIENHHMLKTRAENIQFPLSREDKDLIEAMKKKLYALGGVGLAAPQVNSAK 97

Query: 57  RLVVIDLQ-------DHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSA 108
           +++ + +        D+A      + INP          +   EGC S+      V R  
Sbjct: 98  QIIAVYIPEEAQLLRDNAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYD 157

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I ++Y D          +G  A  LQHE+DHLNG+L  D L+ 
Sbjct: 158 EIQLKYYDEEGNVHQQIENGFYARVLQHEIDHLNGVLITDRLTP 201


>gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5]
 gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 232

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 11  DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61
           D  +R  ++ +     + D+ ++     +     +  GLAA QIG+   +++        
Sbjct: 55  DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 114

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                 D        ++INP       D     EGC S+ +    V R   I     D N
Sbjct: 115 LKKWRPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENAIGPVARFKKIHYHAYDIN 174

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A+G LA  +QHE+DHLNG +F+D+++  ++ M  ++  ++ +
Sbjct: 175 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-QKIMTKEEYLEMRK 222


>gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 200

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68
           L+  +  I+  +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A     
Sbjct: 17  LKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 76

Query: 69  ----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   ++                 EGC S+      V R   I ++Y D        
Sbjct: 77  NAKIFPMHILINPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 136

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
             +G  A  LQHE+DHLNG+L  D L+ 
Sbjct: 137 IENGFYARVLQHEIDHLNGVLITDRLTP 164


>gi|300854965|ref|YP_003779949.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300435080|gb|ADK14847.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 160

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55
           + K +++  +  L + S P+EK +   I   + ++ +           G  +AA QIGV 
Sbjct: 1   MIKEILLLGNDALYKKSLPVEKEDMDSIKETVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P+VFINP +   + +     + C+S P+    VKR    ++ Y 
Sbjct: 61  KRLIYMYIDK------PIVFINPVLKFDNKEMMDVMDDCMSFPNLLVKVKRYKECSIIYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D N   + +   G L+  +QHE DHL+GIL        K   I  K
Sbjct: 115 DINFADKTLKFKGDLSELIQHEYDHLDGILATMRAIDNKSFYIKSK 160


>gi|37626151|gb|AAQ96527.1| hypothetical protein [Vibrio phage VP16T]
          Length = 137

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++    P L  ++  +     D+ +L+ +M   M +  GIGLA  Q+GVL R++V+   
Sbjct: 2   KILKDDAPELHAIAAEVPH-GEDVKDLVLDMTAAMTAAGGIGLAGNQVGVLKRIIVLRC- 59

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                      INP I   +D      EGCLS P      KR   + V   D + Q   I
Sbjct: 60  ----PTFKGCVINPIITRHTDGHVYSPEGCLSYPGKTVAKKRRNKVVVEGYDMDWQPITI 115

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A GL A CLQHE+DHLNG+  
Sbjct: 116 AAKGLTAFCLQHEIDHLNGVTI 137


>gi|301794480|emb|CBW36919.1| polypeptide deformylase [Streptococcus pneumoniae INV104]
          Length = 203

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEGIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|311745501|ref|ZP_07719286.1| peptide deformylase [Algoriphagus sp. PR1]
 gi|126578054|gb|EAZ82274.1| peptide deformylase [Algoriphagus sp. PR1]
          Length = 161

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
               ++   DP L  V  P+     E++      L + M ++  +   G G+AA Q+G++
Sbjct: 3   TIHDILKLGDPRLYEVCDPVLKSELEQVPIWTQQLHEAMEDIRKAYGFGRGIAAPQLGIM 62

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+  ++L        P + +NP++   S++     + C+S P     V+R   +T+ Y 
Sbjct: 63  KRMFYLNLDK------PYIILNPELKNPSEEMFELWDDCMSFPKLLVKVRRHQSLTLSYR 116

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D N   Q     G  +  +QHE DHL+G+L        K     +
Sbjct: 117 DQNWTLQEWKVSGENSELIQHEYDHLDGVLCTMRAIDQKSFRWKE 161


>gi|315222331|ref|ZP_07864237.1| peptide deformylase [Streptococcus anginosus F0211]
 gi|315188664|gb|EFU22373.1| peptide deformylase [Streptococcus anginosus F0211]
          Length = 204

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +          +   ++  + N     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +            P      + + ++     +          +       +
Sbjct: 78  LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKVVAHSVQDAALAEGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D   +   I   G  +  +QHE+DH NGI+F D ++
Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIN 189


>gi|326803937|ref|YP_004321755.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650536|gb|AEA00719.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 192

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAAVQ 51
            +    +P+L R +  I   +N        +M+E +Y++               GLAA Q
Sbjct: 6   DITRDGNPVLHREADTITFPLNEAQKQAAHDMMEYLYNSQDEEKGPELGLRAGVGLAAPQ 65

Query: 52  IGVLYRLVV--IDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRA 102
           +G+  +++   +   +       ++     +       SV        +       D   
Sbjct: 66  VGIGEKMIALLVPNIEDPDSDEEIILEGVMVNPKIISHSVEKVCLREGEGCLSVDDDVSG 125

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R A IT+ Y D    H      G  A  LQHE+DHL+G L+ + +++
Sbjct: 126 YVPRYARITITYDDLEGNHFKKRFKGYPAIVLQHEIDHLDGHLYYERINK 175


>gi|222152449|ref|YP_002561624.1| peptide deformylase [Streptococcus uberis 0140J]
 gi|254767604|sp|B9DTD6|DEF_STRU0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222113260|emb|CAR40782.1| polypeptide deformylase [Streptococcus uberis 0140J]
          Length = 204

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR+ +  +   ++ + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRKEASEVSLPLSDEDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +     + +    P    + + I ++     +          +        
Sbjct: 78  LDISKRIIAVLVPNMEDSEGNPPKEAYSLQEIMYNPKIVAHSVQEAALADGEGCLSVDRL 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R + +TV Y D       I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 138 VEGYVVRHSRVTVDYYDKKGDKHRIKLKGYNAIVVQHEIDHINGIMFYDRINS 190


>gi|306829233|ref|ZP_07462423.1| peptide deformylase [Streptococcus mitis ATCC 6249]
 gi|304428319|gb|EFM31409.1| peptide deformylase [Streptococcus mitis ATCC 6249]
          Length = 208

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQNAALGEGEGCLSVDRNV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 193


>gi|262281961|ref|ZP_06059730.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA]
 gi|262262415|gb|EEY81112.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA]
          Length = 204

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49
            K ++   +P LR V+  +          +   +M  + N     M E +    G+GLAA
Sbjct: 16  MKDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVID-LQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSI 97
            Q+ +  R++ +          NP            +                +      
Sbjct: 76  PQLDISRRIIAVLLPNPEDENGNPPQDAYALKEVMYNPKIVAHSVQDAALADGEGCLSVD 135

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D    V R A +TV Y D + +   +   G  A  +QHE+DH+NGI+F D ++
Sbjct: 136 RDVPGYVVRHARVTVDYFDKDGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRIN 189


>gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 224

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 26  SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH----------AHRKNPMVF 75
            D+ ++     +     +  GLAA QI +   +++  + ++                 ++
Sbjct: 64  EDLRDVSILEKKYDQEENCAGLAAPQISISKCIIIFAVHENEELKKWRPNLKDTMPKTIW 123

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           INP       D     EGC S+ +    V R   I     D N       A+G LA  +Q
Sbjct: 124 INPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQ 183

Query: 136 HELDHLNGILFIDHLSRLK---RDMITKKMSKLVQLRD 170
           HE+DHLNG +F+D+ +  K   ++   +K  K ++  +
Sbjct: 184 HEIDHLNGKVFLDYAAPKKIMTKEKYLEKRKKAMEQEN 221


>gi|73662866|ref|YP_301647.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495381|dbj|BAE18702.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 162

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +    + K + ++  L+ ++ + MY  +   + A QIGV  ++ +
Sbjct: 1   MTIKQLVTSKHPILNKSIPDVTKFDENLEQLLLDLEDTMYDVEASAICAPQIGVAQKVAM 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I           +  INP+II+ SD      EG +SIP+   +V+RS  I V+  D    
Sbjct: 61  I----DMEMDGLLQLINPQIISESDTKVTDLEGSISIPNVYGEVERSKMIVVKSNDKKGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DH  G LF + + + 
Sbjct: 117 EVEMTAYDDIARMILHMIDHFEGRLFTERVEKF 149


>gi|312865443|ref|ZP_07725670.1| peptide deformylase [Streptococcus downei F0415]
 gi|311098961|gb|EFQ57178.1| peptide deformylase [Streptococcus downei F0415]
          Length = 204

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +E  ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLREVAKDVELPLSDEDIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           + +  R++ +     + ++      P               SV        +       +
Sbjct: 78  LDISKRIIAVLVPNPEDKEGNPPAQPYSMQEVMYNPRIVSHSVQDAALADGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +TV Y+D N   Q I   G  +  +QHE+DH NGI+F DH++
Sbjct: 138 VPGYVVRHSRVTVEYVDKNGDKQKIKLRGYNSMVVQHEIDHTNGIMFYDHIN 189


>gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305]
 gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305]
          Length = 234

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 27/173 (15%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   +P+LR  + P + ++ +  ++L+   M + M +  G+GLA  QIG+   + V+
Sbjct: 29  LPIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV 88

Query: 62  DLQ-------------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLS 96
           +                                    + INP      D+ + + EGCLS
Sbjct: 89  EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLS 148

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              Y+A  KR   I   + D              A   QHE DHL+G ++ID 
Sbjct: 149 FDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDK 201


>gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105]
 gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105]
          Length = 244

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 27/173 (15%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V   +P+LR  + P + ++ +  ++L+   M + M +  G+GLA  QIG+   + V+
Sbjct: 39  LPIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV 98

Query: 62  DLQ-------------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLS 96
           +                                    + INP      D+ + + EGCLS
Sbjct: 99  EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLS 158

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              Y+A  KR   I   + D              A   QHE DHL+G ++ID 
Sbjct: 159 FDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDK 211


>gi|86742919|ref|YP_483319.1| formylmethionine deformylase [Frankia sp. CcI3]
 gi|86569781|gb|ABD13590.1| formylmethionine deformylase [Frankia sp. CcI3]
          Length = 549

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQ 51
           M    +V   + ILR+ +RP    N          ++ + ++ +  +     G+G+AA Q
Sbjct: 372 MAAVGIVQEGEAILRQPARPFALPNEAEDARRVVAELSSALERVSALHTFGKGLGIAAPQ 431

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+     ++              +NP +I  S +     EGCLS  D R  V R   + 
Sbjct: 432 VGINRAAAIVRTAGGDTLT----LLNPSVIETSRETDEQYEGCLSFFDVRGLVPRPLELH 487

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V + D +    I      LA  + HE+DHL+G L+ D +
Sbjct: 488 VEHTDIDGNRHITVYRQGLARLVAHEIDHLHGQLYTDRM 526


>gi|153952996|ref|YP_001393761.1| Def1 [Clostridium kluyveri DSM 555]
 gi|219853653|ref|YP_002470775.1| hypothetical protein CKR_0310 [Clostridium kluyveri NBRC 12016]
 gi|146345877|gb|EDK32413.1| Def1 [Clostridium kluyveri DSM 555]
 gi|219567377|dbj|BAH05361.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 161

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTD-GIGLAAVQIGVL 55
           + K +++  +  L R S P+E+ + D++      L D +++     + G  +AA QIGV 
Sbjct: 1   MIKEILLLGNYDLYRKSSPVEEKDIDLIKQTISNLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + + +      P++FINP +   + +     + C+S PD    VKR    TV Y 
Sbjct: 61  KRLIYMYIDE------PLIFINPILTFPNKEMMEVMDDCMSFPDLLVKVKRFKNCTVTYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           D N +   I  +G L+  +QHE DHL+GIL        K
Sbjct: 115 DMNFKENSIKFEGDLSELIQHEYDHLDGILATMRAIDSK 153


>gi|15901306|ref|NP_345910.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|111657373|ref|ZP_01408130.1| hypothetical protein SpneT_02001427 [Streptococcus pneumoniae
           TIGR4]
 gi|148990264|ref|ZP_01821475.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|149007273|ref|ZP_01830931.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|149011684|ref|ZP_01832880.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|168486151|ref|ZP_02710659.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00]
 gi|168491354|ref|ZP_02715497.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|225857082|ref|YP_002738593.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225860775|ref|YP_002742284.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230951|ref|ZP_06964632.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254975|ref|ZP_06978561.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502590|ref|YP_003724530.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126974|ref|YP_003879005.1| peptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|17432945|sp|Q9F2F0|DEF_STRPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767606|sp|C1CLF5|DEF_STRZP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767607|sp|C1CQR2|DEF_STRZT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus pneumoniae]
 gi|14972945|gb|AAK75550.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus pneumoniae]
 gi|147761077|gb|EDK68045.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147764115|gb|EDK71047.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|147924403|gb|EDK75493.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|183570800|gb|EDT91328.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00]
 gi|183574326|gb|EDT94854.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|225726126|gb|ACO21978.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225727795|gb|ACO23646.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238185|gb|ADI69316.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|306484036|gb|ADM90905.1| peptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|327389641|gb|EGE87986.1| peptide deformylase [Streptococcus pneumoniae GA04375]
 gi|332074778|gb|EGI85252.1| peptide deformylase [Streptococcus pneumoniae GA17545]
          Length = 203

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|148377446|ref|YP_001256322.1| formylmethionine deformylase [Mycoplasma agalactiae PG2]
 gi|148291492|emb|CAL58878.1| Formylmethionine deformylase [Mycoplasma agalactiae PG2]
          Length = 187

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 22/173 (12%)

Query: 1   MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAA 49
           M      LV  P  +LR+ S  +   + S+ + L   M+  +  +         G+G+AA
Sbjct: 1   MSVYNVDLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRA 102
           VQ G+L R+  I++ +        V  +          S         +       +   
Sbjct: 61  VQYGILKRVFYINITEDMVDDKKQVLRDVFFNPTIIAMSNSKIALSQGEGCLSVGRNIPN 120

Query: 103 DV----KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                 +    +   Y     + +     G  A   QHELDHL G LFID + 
Sbjct: 121 QSGLVYRHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173


>gi|160913556|ref|ZP_02076247.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991]
 gi|158434108|gb|EDP12397.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991]
          Length = 185

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++   D ++R+ S  +E  +N++   L+ +ML+ +  +              +G+AA+
Sbjct: 6   KDIIQDSDTVIRKKSVNVELPLNAEDKQLLMDMLQYVRDSQDNELAEQNGLRPAVGIAAI 65

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD----VKR 106
           Q+G+  +++ + + D           N +I++ S   S  + G   +   +       + 
Sbjct: 66  QLGIPKKMLAVVVPDEEGNSQEFALANARIVSESVQLSYLKNGEGCLSVEKEHQGLVPRH 125

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +      Y     +   I A   LA  LQHE+DH +G LF D ++
Sbjct: 126 ARITVKAYDLLQNKEITIKASDYLAIVLQHEIDHFSGTLFYDRIN 170


>gi|307720000|ref|YP_003891140.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978093|gb|ADN08128.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 269

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 2   VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K ++ +P  P L      +   N ++ +LI ++ + + + +   L+A QIG  Y ++V
Sbjct: 1   MVKEIIKYPTTPSL-EFGANVRHFNQELFDLIKDLKDTIEANNLDALSAFQIGSPYAVIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    +     +    I   +      E     P   A  KR   I + Y D +A 
Sbjct: 60  IKKDDGEFLE-----LINPRIIKREGTITPVESTAYFPGLSAKTKRYEKIKLMYEDRDAN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q + A+G LA  +Q +LD++ G  F   L   +R ++  K+ 
Sbjct: 115 QQFLEAEGDLAVTIQRKLDYVFGSNFRVRLDDNERKLLDSKLE 157


>gi|325695505|gb|EGD37405.1| peptide deformylase [Streptococcus sanguinis SK150]
          Length = 220

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAA 49
            K ++   +P LR ++  +   ++   + L + M++ +  +             G+GLAA
Sbjct: 32  MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAA 91

Query: 50  VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97
            Q+ +  R++ +     D      P    + + + ++     +          +      
Sbjct: 92  PQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 151

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++
Sbjct: 152 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 205


>gi|313901227|ref|ZP_07834715.1| peptide deformylase [Clostridium sp. HGF2]
 gi|312954185|gb|EFR35865.1| peptide deformylase [Clostridium sp. HGF2]
          Length = 184

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   D I+R  S P+   + ++   L+ +ML            E       +G+AA+Q
Sbjct: 7   DIVKDTDAIVRTKSEPVTLPLGAEDEALLQDMLTYVRSSQDAEIAEKENLRPAVGIAAIQ 66

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109
           +GV  R++ + + +        +     +            +       ++   V R+A 
Sbjct: 67  LGVPKRMLAVVVPNEEGIDEYALVNPRIVSESVQRAYLKNGEGCLSVENEHEGIVPRAAR 126

Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           ITVR  D    Q   I A   LA  LQHE+DH +G LF D +++
Sbjct: 127 ITVRGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170


>gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44]
 gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44]
          Length = 124

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 4/118 (3%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E M   DG+GLAA Q+GV  ++ V+D+ D       +  INP I+    +    +  C
Sbjct: 1   MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTG---KIELINPVILEKRGEQVGPEG-C 56

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           LS P    +V+R+ +I VR  +   +  ++ AD  LA  +QHE+DHL+G+LF   ++R
Sbjct: 57  LSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVTR 114


>gi|329115956|ref|ZP_08244673.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
 gi|326906361|gb|EGE53275.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
          Length = 204

 Score = 75.6 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR  +  +          +   +M  + N     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAHAEEVSLPLSDQDLILGEKMMQFLKNSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + V  R++ +     + A    P    + K + ++     +          +        
Sbjct: 78  LDVSKRIIAVLVPNMEDAEGNPPKEAFSIKEVMYNPKIVSHSVQDAALADGEGCLSVDRL 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 138 IEGYVVRHARVTVEYFDKEGEKHRIKLKGYNAIVVQHEIDHINGIMFYDRINS 190


>gi|145596781|ref|YP_001161078.1| formylmethionine deformylase [Salinispora tropica CNB-440]
 gi|145306118|gb|ABP56700.1| formylmethionine deformylase [Salinispora tropica CNB-440]
          Length = 187

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61
            +P+V  P  +L R  R ++      + L  +++  M  +   +GLAA QIGV  R+  +
Sbjct: 23  VRPVVSAPAAVLSRAGRDVDPTAEQTVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DCN 118
           D+     A   +    +   ++  +  +   +EGC+S+PD   DVKR+  + V       
Sbjct: 83  DVTGHPKASTGHGAFVLCNAVVVEASRWKAGREGCMSVPDLTGDVKRAGRLVVEGDLPGT 142

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +   +  D   A  LQHE+DH  G+LF+D +
Sbjct: 143 GKTVRLVTDAFEARALQHEIDHCAGLLFLDRV 174


>gi|293364031|ref|ZP_06610767.1| peptide deformylase [Mycoplasma alligatoris A21JP2]
 gi|292552521|gb|EFF41295.1| peptide deformylase [Mycoplasma alligatoris A21JP2]
          Length = 183

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQ 51
           M    LV  P  +LR+ S  +   +  + ++L + M+        E      G+G+AAVQ
Sbjct: 1   MFDVKLVKLPKKVLRQKSVNVSIPLIQEDIDLAEKMIYHIDDSQKENSKFRPGVGVAAVQ 60

Query: 52  IGVLYRLVVIDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            G+L  +  + ++D  +          NP +    +  T   +           P     
Sbjct: 61  YGILKNVFYVHVRDSVNNKEIFRDVLFNPKIISRSETKTALSEGEGCLSVHEDWPGQEGF 120

Query: 104 VKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R A + V       +        G +A   QHELDHL G LFID +++
Sbjct: 121 VHRDARVIVEAYSYFQKKVVTFDVFGYVAIVFQHELDHLQGNLFIDRINK 170


>gi|322386945|ref|ZP_08060569.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
 gi|321269227|gb|EFX52163.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
          Length = 210

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 24  DIIREGNPTLRAVAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 83

Query: 52  IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           + +  R++ +     + ++    K                 SV        +       +
Sbjct: 84  LDISKRIIAVLVPNLEDEEGNPPKEAYSLAQVMYNPKVVAHSVQDAALADGEGCLSVDRE 143

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D + Q   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 144 VPGYVVRHARVTVDYFDKDGQKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 195


>gi|323454882|gb|EGB10751.1| hypothetical protein AURANDRAFT_22058 [Aureococcus anophagefferens]
          Length = 175

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + L     P LR  ++P+ +       +  ++ ++++ M   +G G+A  QIG  +R+
Sbjct: 20  AVRALPPLGTPCLREQAKPVPEAMFGTPALDAIVADLVDTMRDANGAGIAGPQIGEGWRI 79

Query: 59  VVI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            V+          +  +    VF+NP++    +      EGCLSIP  R  V R++ +  
Sbjct: 80  FVVEGSGANPRYPYKPKLPLTVFVNPELEVVDEAPMEIFEGCLSIPGVRGRVARASKVRC 139

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
                +     + A G  A  LQHE DHL+GILF D
Sbjct: 140 AARRPDGSSFSVLAAGHAAGTLQHEQDHLDGILFPD 175


>gi|319939890|ref|ZP_08014245.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
 gi|319810901|gb|EFW07220.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
          Length = 204

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V++ +   +    + L + ML+ + ++             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPATAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99
           + +  R++ +            P      + + ++     +          +       +
Sbjct: 78  LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKIVAHSVQDAALAEGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D   +   I   G  +  +QHE+DH NGI+F D ++
Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIN 189


>gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex]
          Length = 234

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR  S  +   E  +  I N++  +  VM     IG++A QIG+  R+++I++ 
Sbjct: 49  QLGDPTLRLKSSEVVLDELSSERIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIP 108

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      VFINP +       +++ E C S+    A V R   +
Sbjct: 109 DSLVEKFGPETCKTREIVPTPFKVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAV 168

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V+  + +       A G  A  +QHE+DHL+G ++ D +  
Sbjct: 169 HVKGYEYDGSPTEWDATGWAARIVQHEMDHLDGQIYTDIMES 210


>gi|313884730|ref|ZP_07818486.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620098|gb|EFR31531.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 188

 Score = 74.8 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K  V   DPIL R +  +   ++++   L  +M             E      G+GLA
Sbjct: 3   TMKDFVPEDDPILHREAAEVSFPLSAEDRQLALDMRQFLINSQNDEVAEKYDLRAGVGLA 62

Query: 49  AVQIGVLYRLVVID--LQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99
           A Q+G   ++  +     D  +    ++     I       SV        +       +
Sbjct: 63  APQLGYDKKIFCVYLEAYDEENDSTEVMMDEIVINPRIIKHSVKKAALKDGEGCLSVNRE 122

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R   +T+RY + +     I      A   QHE DHL GI+F +H+S 
Sbjct: 123 VPGLVPRPKRVTLRYYNLDGDELEIKLTDYEAMVFQHEFDHLKGIMFYEHISD 175


>gi|291320109|ref|YP_003515367.1| formylmethionine deformylase [Mycoplasma agalactiae]
 gi|290752438|emb|CBH40409.1| Formylmethionine deformylase [Mycoplasma agalactiae]
          Length = 187

 Score = 74.8 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 22/173 (12%)

Query: 1   MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAA 49
           M      LV  P  +LR+ S  +   + S+ + L   M+  +  +         G+G+AA
Sbjct: 1   MSVYNVDLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRA 102
           VQ G+L R+  I++ +        +  +          S         +       +   
Sbjct: 61  VQYGILKRVFYINITEDMVDDKSQILRDVFFNPTIIAMSNSKIALSQGEGCLSVRRNIPN 120

Query: 103 DV----KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                 +    +   Y     + +     G  A   QHELDHL G LFID + 
Sbjct: 121 QSGLVYRHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173


>gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta]
          Length = 239

 Score = 74.8 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  IE      +D   +I  ++ VM + D  GL+  QIG+ +++  I+  
Sbjct: 52  QVGDPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECT 111

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                +     +FINP++           E C SI  Y A V R+  +
Sbjct: 112 EKTMKGVEESVRKAHEMNVVPMTIFINPELKVIDYTPITLYEECASIQGYSAAVPRAYEV 171

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  ++ +A+     A G  A   QHE DHL G L+I+ + 
Sbjct: 172 EITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKMD 212


>gi|328868869|gb|EGG17247.1| hypothetical protein DFA_08237 [Dictyostelium fasciculatum]
          Length = 201

 Score = 74.4 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 19/169 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK----INSDIMNLIDNMLEV---------------MYS 41
           M+ K ++   + +L++V++P  K        +  L+D M +V                Y 
Sbjct: 1   MISKNILKIGNSLLKQVAQPWTKEELKDTKRVEKLLDLMDDVLIPSLQSAQPIKRNSNYQ 60

Query: 42  TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
               G    + G+      +       R      +       +++     E CLS+P Y 
Sbjct: 61  ITSGGPVFGKTGIAGSSKNLFNLTKYKRSMQTPLVTTPKKITANNTIDVWESCLSVPSYY 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             V R+    + + D     + I ADGL++ CLQHE DHL G +F + L
Sbjct: 121 GRVTRARKCIINFWDITGTPRSIEADGLISACLQHENDHLLGRVFFERL 169


>gi|330470685|ref|YP_004408428.1| XRE family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813656|gb|AEB47828.1| XRE family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 504

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++     +LR+ +RP +         ++   + + +  + E+     G+G+AA Q+ +  
Sbjct: 332 ILQRGADLLRQPARPFDLPREARAAREVIDRLTDALARLDELHPFAKGVGIAAPQLEIGR 391

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              VI   D      P+V +NP+++  + D     EGCLS  D+R  V R   + V +  
Sbjct: 392 AAAVIRPPD--RTAEPLVLLNPRVVDAAPDTDEQYEGCLSFFDHRGLVPRPLRLDVEHAQ 449

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +  I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 450 LDGRRVITSFEFGMARLVAHEIDHLEGRLYVDRMAP 485


>gi|223984418|ref|ZP_03634556.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM
           12042]
 gi|223963613|gb|EEF67987.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM
           12042]
          Length = 185

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 21/168 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52
           +V   D  LR  S P+   ++    N +  +L            E       +G+AA+QI
Sbjct: 4   IVKDSDAHLRDKSAPVSLPLSEADKNTLMELLTYVRESTDPELAEAKNLRPAVGIAAIQI 63

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVK 105
           G+  +L+ + + +     NP+ +            SV        +     + D+   V 
Sbjct: 64  GIPKQLLAVVVDEEDKNGNPIHYEYALANAKIVSQSVQNAYLKTGEGCLSVLDDHPGYVI 123

Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           RSA I V+  D    +     A G +A  LQHE+DH +GILF D ++ 
Sbjct: 124 RSARIKVKGYDMLQDREVTFRASGYVAIVLQHEIDHFSGILFYDRINP 171


>gi|194396894|ref|YP_002038089.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|238690834|sp|B5E5U9|DEF_STRP4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194356561|gb|ACF55009.1| peptide deformylase [Streptococcus pneumoniae G54]
          Length = 203

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 24/171 (14%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEKVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100
           + +  R++ +     +++    +                 SV        +       + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEXCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188


>gi|294669089|ref|ZP_06734175.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
          29315]
 gi|291309081|gb|EFE50324.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
          29315]
          Length = 76

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++ +PD  L  V++P+EKI+  I  LI +M + MY   GIGLAA Q+ V  R+VV
Sbjct: 1  MALLNILQYPDDRLHTVAKPVEKIDERIKTLITDMFDTMYEARGIGLAATQVDVHERVVV 60

Query: 61 IDLQDH 66
          +DL + 
Sbjct: 61 MDLSEE 66


>gi|313678726|ref|YP_004056466.1| peptide deformylase [Mycoplasma bovis PG45]
 gi|312950135|gb|ADR24730.1| peptide deformylase [Mycoplasma bovis PG45]
          Length = 186

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQIGVL 55
            LV  P  +LR+ S  +   ++++ + L + M+        E      G+G+AAVQ GVL
Sbjct: 7   ELVKLPKKVLRQKSVNVPIPLSNEDIELAEKMIYHIDDSQKEGSKFQAGVGVAAVQYGVL 66

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-----------RADV 104
            R+  I++ +           +          S  +                     A  
Sbjct: 67  KRVFYINVTEDMVDDKKYALRDVFFNPVVIAKSESKIALSQGEGCLSVGRNIKNQSGAVY 126

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    +   Y     + +        A   QHELDHL+G LFID +  
Sbjct: 127 RHKRIVIEAYSYFEKKVKRYDLKDYPAIVAQHELDHLDGKLFIDRIDP 174


>gi|316983220|pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus
           Mutans Ua159
          Length = 238

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   +N D + L + ML            E M    G+GLAA Q
Sbjct: 52  DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 111

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99
           + +  R++ +          NP            +                +        
Sbjct: 112 LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSVDRV 171

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++
Sbjct: 172 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRIN 223


>gi|152991786|ref|YP_001357507.1| hypothetical protein SUN_0190 [Sulfurovum sp. NBC37-1]
 gi|151423647|dbj|BAF71150.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 273

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+PD  +   S  +   N  + +++++M + M + D   +AA+QI   Y +++I
Sbjct: 1   MVQKLVIYPDDRMNCTSTDVRSFNQTLWDVLEDMRDTMLAHDIKAMAAMQIAYPYNIILI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +               I  ++D    +E  +  PD    + R   I + Y D N Q 
Sbjct: 61  KEGEE------YHEYINPRIIKNEDLFDSEESSIHYPDVTVTIPRYGKIKLVYEDRNGQV 114

Query: 122 QIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                +   LA  LQ ++D   G   +D + +  R+ I 
Sbjct: 115 HYEDIEDRELAATLQRKIDITFGGNILDKVDKNTREKIL 153


>gi|328675640|gb|AEB28315.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 204

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           + +L +  +P+ +I S +I N+I  M E M   +GIGLAA QIG  Y++ +I        
Sbjct: 16  NQVLYQKCKPVSEIKSVEIQNIITEMYEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 74

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              D       +              S +     ++ + R  +     I     + + + 
Sbjct: 75  YPFDFGSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
            I   D + A   QHE +HL G +++D
Sbjct: 135 IIGKLDSIAAVIFQHEFNHLLGSVYVD 161


>gi|24378660|ref|NP_720615.1| peptide deformylase [Streptococcus mutans UA159]
 gi|39930891|sp|Q8DWC2|DEF_STRMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide deformylase [Streptococcus mutans UA159]
          Length = 204

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   +N D + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99
           + +  R++ +          NP            +                +        
Sbjct: 78  LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++
Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRIN 189


>gi|89255883|ref|YP_513245.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314370|ref|YP_763093.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|254367244|ref|ZP_04983272.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290953373|ref|ZP_06557994.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313377|ref|ZP_06803985.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143714|emb|CAJ78913.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115129269|gb|ABI82456.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253062|gb|EBA52156.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
          Length = 211

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 1   MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47
           M+   +         + + D    +L +  +P+  I N++I N+I  M E M   +GIGL
Sbjct: 1   MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGL 59

Query: 48  AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           AA QIG  Y++ +I                   +              S +     ++ +
Sbjct: 60  AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R  +     I     + + +      D + A   QHE +HL G +++D
Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168


>gi|156501866|ref|YP_001427931.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009647|ref|ZP_02274578.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368721|ref|ZP_04984734.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|156252469|gb|ABU60975.1| polypeptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121642|gb|EDO65812.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 210

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I        
Sbjct: 22  NKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +              S +     ++ + R  +     I     + + + 
Sbjct: 81  YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
                D + A   QHE +HL G +++D
Sbjct: 141 ITGKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|169827255|ref|YP_001697413.1| peptide deformylase [Lysinibacillus sphaericus C3-41]
 gi|168991743|gb|ACA39283.1| Peptide deformylase [Lysinibacillus sphaericus C3-41]
          Length = 192

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQIGVLYRLVV 60
           LR+ ++ +   +  +  +++ +ML+                  G GL+A QIGV  R+  
Sbjct: 23  LRKQTQDVAIPVPLEDRHILFSMLQYLKNSQDPILTKKYKLRPGSGLSANQIGVDKRMFA 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMDCN 118
           +  +DH  +   M      +    +   + +              V R   I V+    +
Sbjct: 83  VLFEDHDQKPEMMFINPKVMSHSLNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYTID 142

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            Q  I+   G  +  +QHE+DHLNGI+F D +++
Sbjct: 143 GQEFILSLKGYESIVVQHEIDHLNGIMFYDRINK 176


>gi|322392208|ref|ZP_08065669.1| peptide deformylase [Streptococcus peroris ATCC 700780]
 gi|321144743|gb|EFX40143.1| peptide deformylase [Streptococcus peroris ATCC 700780]
          Length = 203

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49
            K ++   +P LR ++  +   ++   + L + ML            E M    G+GLAA
Sbjct: 16  MKDIIREGNPTLRALAEEVSFPLSDQEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAA 75

Query: 50  VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98
            Q+ +  R++ +     +++                      SV        +       
Sbjct: 76  PQLDISKRIIAVLVPNIVEEGETPTEAYSMQAVMYNPKIVSHSVQDAALAEGEGCLSVDR 135

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +    V R A +TV Y D + +   I   G  +  +QHE+DH NG++F D ++
Sbjct: 136 EVPGYVIRHARVTVEYFDKDGEKHRIKLKGYNSIVVQHEIDHTNGVMFYDRIN 188


>gi|241667120|ref|ZP_04754698.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254875674|ref|ZP_05248384.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841695|gb|EET20109.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 201

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ----- 64
           + +L +  +P+  I +S+I N+I  M E M   +GIGLAA QIG  +++ +I+       
Sbjct: 13  NQVLYQKCKPVTDIQSSEIQNIIAEMREKMQG-NGIGLAANQIGYPHQIFMIEFDSSNAR 71

Query: 65  ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +       +                +     ++   R  +     I     + + + 
Sbjct: 72  YPLNFDSVPFQVFINPKITKASEKRVGFWHGCLSALGGKRGKLATYKEIEYEAYNQHGKK 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
                D + A   QHE +HL G +++D
Sbjct: 132 ITGKLDSIAAVIFQHEFNHLLGSVYVD 158


>gi|54113563|gb|AAV29415.1| NT02FT1681 [synthetic construct]
          Length = 211

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 1   MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47
           M+   +         + + D    +L +  +P+  I N++I N+I  M E M   +GIGL
Sbjct: 1   MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGL 59

Query: 48  AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           AA QIG  Y++ +I                   +              S +     ++ +
Sbjct: 60  AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R  +     I     + + +      D + A   QHE +HL G +++D
Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168


>gi|255027127|ref|ZP_05299113.1| peptide deformylase [Listeria monocytogenes FSL J2-003]
          Length = 131

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 43  DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPD 99
            G+G+AA Q+ V  R + I + D   R    V  NPKI + S   +     +       +
Sbjct: 5   GGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDRE 64

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
               V RS  +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 65  VPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 118


>gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis
           mellifera]
          Length = 328

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 16/152 (10%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD---- 85
            ++D++ E++   D +GLAA QIG+ ++L V+++ + +             IT       
Sbjct: 172 QILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYF 231

Query: 86  ----------DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
                     +  V+ E C SI  Y A+V R   + +  ++   +   + A+G LA  + 
Sbjct: 232 INPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARIIH 291

Query: 136 HELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           HE+DHL G L+ D +     +    K  K+ +
Sbjct: 292 HEMDHLKGHLYTDRMFPFSFN--YGKWEKIDK 321


>gi|134302514|ref|YP_001122484.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|254370075|ref|ZP_04986081.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874370|ref|ZP_05247080.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|134050291|gb|ABO47362.1| polypeptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568319|gb|EDN33973.1| hypothetical protein FTBG_01170 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840369|gb|EET18805.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158706|gb|ADA78097.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 210

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I        
Sbjct: 22  NKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +              S +     ++ + R  +     I     + + + 
Sbjct: 81  YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
                D + A   QHE +HL G +++D
Sbjct: 141 ITGKLDSIAAIIFQHEFNHLLGSVYVD 167


>gi|56707552|ref|YP_169448.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670023|ref|YP_666580.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456620|ref|ZP_03665093.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604044|emb|CAG45036.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320356|emb|CAL08419.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 211

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 1   MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47
           M+   +         + + D    +L +  +P+  I N++I N+I  M E M   +GIGL
Sbjct: 1   MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGL 59

Query: 48  AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           AA QIG  Y++ +I                   +              S +     ++ +
Sbjct: 60  AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R  +     I     + + +      D + A   QHE +HL G +++D
Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168


>gi|290579649|ref|YP_003484041.1| putative polypeptide deformylase [Streptococcus mutans NN2025]
 gi|254996548|dbj|BAH87149.1| putative polypeptide deformylase [Streptococcus mutans NN2025]
          Length = 204

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   ++ D + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRAVAQDVTFPLSEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77

Query: 52  IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99
           + +  R++ +          NP            +                +        
Sbjct: 78  LDISKRIIAVLIPNPEDEDGNPPKEAYALKEIMYNPRIIAHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++
Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRIN 189


>gi|159040050|ref|YP_001539303.1| XRE family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918885|gb|ABW00313.1| transcriptional regulator, XRE family [Salinispora arenicola
           CNS-205]
          Length = 506

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++     +LR+ +RP +          +   +   +  + E+   + G+G+AA Q+G+  
Sbjct: 334 ILQHGADLLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGR 393

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              V+   D      P+V +NP+++  + D     EGCLS  D R  V R   I V +  
Sbjct: 394 AAAVVRPPD--LSGEPVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTH 451

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 452 IDGSRVITSYEYGMARLVAHEIDHLEGRLYVDRMAP 487


>gi|254373927|ref|ZP_04989409.1| polypeptide deformylase [Francisella novicida GA99-3548]
 gi|151571647|gb|EDN37301.1| polypeptide deformylase [Francisella novicida GA99-3548]
          Length = 210

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I        
Sbjct: 22  NKVLYQKCKPVADIQSAEIQNIITEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +              S +     ++ + R  +     I     + + + 
Sbjct: 81  YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
                D + A   QHE +HL G +++D
Sbjct: 141 ITAKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|307299459|ref|ZP_07579259.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914858|gb|EFN45245.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 183

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTD-GIGLAAVQIGV 54
           M+   +++  +P+LR  S P+    S      I+ L   + E       G G++A QIG+
Sbjct: 1   MMTCEVLLLGNPLLRETSSPVSDFRSQETIGQIVMLKQALDEFRKENGFGRGISAPQIGI 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L R+V ++       +   V  NP+I+  S       + C+S P     ++RS  + V Y
Sbjct: 61  LKRIVALN-----LGQGSFVIANPRIVDRSRATFTMWDDCMSFPHLLIRLERSLSVDVVY 115

Query: 115 MDCNAQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            D               +  LQHE+DHL+GIL IDH    K  +   +     + R+
Sbjct: 116 EDERGIEYEWKGVDQARSELLQHEIDHLDGILAIDHALDAKSIIYRSEYE---RNRE 169


>gi|219130004|ref|XP_002185165.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217403344|gb|EEC43297.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 160

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 8   IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +PDPILRR ++P++        +      +     S   +GLAA Q GV  R+V +  +
Sbjct: 3   RWPDPILRRPAQPVDAHWFGTGTLQKACALLRATSVSEKAVGLAAQQCGVDARIVYLQPE 62

Query: 65  DHAHRKNPMVFINP--------------KIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +     N   F                 +     D  S  +   +  P + A V R +++
Sbjct: 63  ERHPLINRRSFQRTAELSEITMINPQIVERSPELDVHSWREHCLVLPPTFDATVLRDSWV 122

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           T+ + D + +   +   G +A  +QHELDH  GIL  D
Sbjct: 123 TIVFRDIHGRPHSVRLRGEMARAVQHELDHDRGILITD 160


>gi|213618841|ref|ZP_03372667.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-2068]
          Length = 103

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 49/70 (70%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1  MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61 IDLQDHAHRK 70
          ID+ ++   +
Sbjct: 61 IDVSENRDER 70


>gi|328676563|gb|AEB27433.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 204

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I        
Sbjct: 16  NKVLYQKCKPVADIQSAEIQNIITEMHEKMQC-NGIGLAANQIGYPYQIFMIEFDSSNAR 74

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +              S +     ++ + R  +     I     + + + 
Sbjct: 75  YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
            I   + + A   QHE +HL G +++D
Sbjct: 135 IIGKLESIAAVIFQHEFNHLLGSVYVD 161


>gi|293400829|ref|ZP_06644974.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305855|gb|EFE47099.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 185

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52
           +V   DPI+R  S  +   ++ +   L+ +ML            E       +G+AA+Q+
Sbjct: 8   IVKDSDPIVREKSVTVPIPMHEEDKELLMDMLQYVRDSQDSELAEKQNLRPAVGIAAIQL 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD----VKRSA 108
           G+  +++ + +             NPKII+ S   +  + G   +           + + 
Sbjct: 68  GIPKKMLAVVVPKDEEEDYEFALANPKIISESIQKAYLKNGEGCLSVEEEHEGIVPRAAR 127

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                +     +  +I A G LA  LQHE+DH NG LF DH++
Sbjct: 128 IKVKGFDLLRNEEIVISASGYLAIVLQHEMDHFNGTLFYDHIN 170


>gi|253581454|ref|ZP_04858679.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725]
 gi|251836524|gb|EES65059.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725]
          Length = 161

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55
           +KK +++  +  L ++S P++K    +I  ++ N+ +           G  +AA QIGV 
Sbjct: 1   MKKEILLLGNEELYQISEPLKKDEIENIKFIVQNLHDTLLDFREKYHAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P++FINP +    D+     + C+S P+    VKR     ++Y+
Sbjct: 61  KRLLYMFIDK------PVIFINPVLEFPDDEMMEVLDDCMSFPNLLVKVKRYKRCRIKYL 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D + + Q +  +G LA  LQHE DHL+GIL        K  +I K
Sbjct: 115 DMDWKEQEMSLEGDLAELLQHEYDHLDGILATMRAIDNKSFVIKK 159


>gi|307721460|ref|YP_003892600.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306979553|gb|ADN09588.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 272

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P+    +  +   +  +  LI+++ + +   +   L+A QIG  Y +V++
Sbjct: 1   MVRTIIQYPTPLSVEYATDVRIFDETLFALIEDLKDTINENNLDALSAYQIGSYYNVVIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       + +    +       +  E     PD  A+++R   I+V Y D N   
Sbjct: 61  K-----DDSGEFIEMINPRLISHSGTIITDEQTAYYPDKSAEIQRYDKISVVYQDRNGND 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + + A G  +  +Q ++D+  G  F+  +S
Sbjct: 116 KSMQASGEFSIRIQRKIDYTFGATFVQKMS 145


>gi|319776853|ref|YP_004136504.1| peptide deformylase [Mycoplasma fermentans M64]
 gi|318037928|gb|ADV34127.1| Peptide deformylase [Mycoplasma fermentans M64]
          Length = 189

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIG 53
            LV  P+ ILR+ S+ ++  ++ +   L   M+  +  +           G+G+AA+Q G
Sbjct: 6   KLVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYG 65

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL----------SIPDYRAD 103
           +  R+  I++ +       +      +I      +   E  L          +I +    
Sbjct: 66  IPKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGY 125

Query: 104 VKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   I +        + +        A   QHE DHL G LFID +++
Sbjct: 126 VYRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINK 175


>gi|254372465|ref|ZP_04987954.1| hypothetical protein FTCG_00025 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570192|gb|EDN35846.1| hypothetical protein FTCG_00025 [Francisella novicida GA99-3549]
          Length = 210

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I        
Sbjct: 22  NKVLYQKCKPVADIQSAEIQNIIIEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +              S +     ++ + R  +     I     + + + 
Sbjct: 81  YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
                D + A   QHE +HL G +++D
Sbjct: 141 ITGKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|257468433|ref|ZP_05632527.1| hypothetical protein FulcA4_03769 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062699|ref|ZP_07927184.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|313688375|gb|EFS25210.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185]
          Length = 159

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55
           +K+ +++  +  L ++S P++    + + +++ ++ +           G  +AA QIGV 
Sbjct: 1   MKREILLLGNEELYQISEPVKPDEIETLKSVVQDLHDTLMDFREKYHAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P+VFINP +    ++     + C+S P+    V R     ++Y+
Sbjct: 61  KRLLYMFIDK------PVVFINPVLEFPDNEMMEVLDDCMSFPNLLVKVMRHKRCRIKYL 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D + + Q++  +G L+  LQHE DHL+GIL        K  +I K
Sbjct: 115 DMDWKEQVMSLEGDLSELLQHEFDHLDGILATMRAIDNKSLVIKK 159


>gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior]
          Length = 240

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  IE      +D   +I +++ VM +    G++  QIG+ +++  I+  
Sbjct: 52  QVGDPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYGISGPQIGLPWQIFAIECT 111

Query: 65  DH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                +     +FINP++           EGC SI  Y A V R+  +
Sbjct: 112 EEIMEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYEGCESIRGYSAAVPRAYEV 171

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ++ ++ +A+     A G  A   QHE DHL G L+I+ + 
Sbjct: 172 EIKALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKMD 212


>gi|213428282|ref|ZP_03361032.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
          Length = 115

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 49/70 (70%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1  MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61 IDLQDHAHRK 70
          ID+ ++   +
Sbjct: 61 IDVSENRDER 70


>gi|308189670|ref|YP_003922601.1| peptide deformylase [Mycoplasma fermentans JER]
 gi|307624412|gb|ADN68717.1| peptide deformylase [Mycoplasma fermentans JER]
          Length = 189

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIG 53
            LV  P+ ILR+ S+ ++  ++ +   L   M+  +  +           G+G+AA+Q G
Sbjct: 6   KLVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYG 65

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL----------SIPDYRAD 103
           +  R+  I++ +       +      +I          E  L          +I +    
Sbjct: 66  IPKRMFYININNETINGAKIEDFRDVLINPKVLAISEYEVSLPGEGCLSVGDNIKNQEGY 125

Query: 104 VKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   I +        + +        A   QHE DHL G LFID +++
Sbjct: 126 VYRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINK 175


>gi|159026645|emb|CAO86579.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 181

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +PIL++ +  I+ + +SD  NLID+++  + +  G+G+AA Q+    RL
Sbjct: 13  MTQVLTITQLGNPILQQKAPEIDNLLDSDCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 72

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++          A   +P   INP+I+  S++     EGCLS+P++R  V R  +I V 
Sbjct: 73  FIVASGPNPRYPDAPIMSPTAMINPRILQVSEEMVKGWEGCLSVPNWRGFVPRHQWIEVS 132

Query: 114 YMDCNAQHQIIYADGLLATC 133
           Y   N +         +A  
Sbjct: 133 YYGRNGREIRQIFRDFVARI 152


>gi|158320246|ref|YP_001512753.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158140445|gb|ABW18757.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 164

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-----SDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
           + + ++   +P L   S  + + +       + +L D +++       G  +AA QIG+ 
Sbjct: 1   MVREILKLGNPQLYETSEEVVEADIAFLSEWVQDLHDTLMDYRERYGAGRAVAAPQIGIK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ +          P +FINP +    D+     + C+S P     V+R     + Y 
Sbjct: 61  KRLLYMF------TDQPYIFINPVMSFPEDEKYTLLDDCMSFPGLIVKVERYKRAEISYF 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +   Q +Y  G L+  LQHE DHL GIL        K  +  ++M +
Sbjct: 115 DKDFNPQKMYLKGDLSELLQHEYDHLEGILATMRAVDNK-SLYLEQMKR 162


>gi|118497100|ref|YP_898150.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|208778893|ref|ZP_03246239.1| polypeptide deformylase [Francisella novicida FTG]
 gi|118423006|gb|ABK89396.1| peptide deformylase [Francisella novicida U112]
 gi|208744693|gb|EDZ90991.1| polypeptide deformylase [Francisella novicida FTG]
          Length = 211

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 1   MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47
           M+   +         + + D    +L +  +P+  I +++I N+I  M E M   +GIGL
Sbjct: 1   MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQSAEIQNIIIEMHEKMQG-NGIGL 59

Query: 48  AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           AA QIG  Y++ +I                   +              S +     ++ +
Sbjct: 60  AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R  +     I     + + +      D + A   QHE +HL G +++D
Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168


>gi|330686209|gb|EGG97823.1| peptide deformylase [Staphylococcus epidermidis VCU121]
          Length = 164

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-- 90
           D++ +      G+GLAA QI V  R++ + L D  + K+    +    +        Y  
Sbjct: 28  DDIAKKYGLRSGVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLP 87

Query: 91  --QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             +       +    V R   +T++  D +     +   G  A   QHE+DHLNGI+F D
Sbjct: 88  TGEGCLSVDENIPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYD 147

Query: 149 HLSR 152
           H+  
Sbjct: 148 HIDD 151


>gi|302340674|ref|YP_003805880.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301637859|gb|ADK83286.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 175

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 6   LVIFPDPILRRVSRPI-----EKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           +++  DP LR+ +         ++  +   L   +         G  +AA QIG+  R++
Sbjct: 5   ILLLGDPRLRKKATTASLPADTQLRREDERLQKALEAFRAEKGFGRAIAAPQIGISKRVI 64

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L             NP I + S++  +  + C+S PD    V+R   I++ Y D   
Sbjct: 65  ALHLDGKTFS-----IFNPVITSHSEETFLLWDDCMSFPDLLVKVRRYTSISIVYQDALG 119

Query: 120 -QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            +H+    D  L+  LQHE+DHL+GIL ID     K
Sbjct: 120 REHRWEKPDRSLSELLQHEIDHLDGILAIDRAIDRK 155


>gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 250

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 1/125 (0%)

Query: 42  TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
            DG+GLAA Q+GV  RL+V +        N  + +NP+I+       + +EGCLS P   
Sbjct: 96  DDGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIY 155

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            DV+RS  I V+ +D   Q   +       A   QHE DHL G+LF D +     + +  
Sbjct: 156 GDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRP 215

Query: 161 KMSKL 165
           ++  L
Sbjct: 216 ELVAL 220


>gi|213026865|ref|ZP_03341312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 98

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 49/70 (70%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1  MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61 IDLQDHAHRK 70
          ID+ ++   +
Sbjct: 61 IDVSENRDER 70


>gi|299538334|ref|ZP_07051617.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
 gi|298725921|gb|EFI66513.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
          Length = 191

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQIGVLYRLV 59
           ILR+ ++ +   + +   N +  ML+                  G GL+A QIGV  R+ 
Sbjct: 22  ILRKQTQEVPIPVTTVDRNTLLAMLQYLKNSQNPTLAKKYKLRPGSGLSANQIGVNKRMF 81

Query: 60  VIDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            +   D      NP +  +   + +  +    +            V R   I V+  D +
Sbjct: 82  AVLFDDQEMMLINPKIISHSLNMIYLPEG---EGCLSVNRPVPGFVPRYERIKVKAYDID 138

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
               I+   G  A  +QHE+DHLNGI+F D +++ 
Sbjct: 139 GHESIVQLQGYGAIVVQHEIDHLNGIMFYDRINKE 173


>gi|329576776|gb|EGG58269.1| peptide deformylase [Enterococcus faecalis TX1467]
          Length = 131

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E M + DGIGLAA QIG   ++ VI++ + + R      INP II         +  C
Sbjct: 1   MYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELINPVIIEKKGTSIDVEG-C 56

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           LSIP+    V+R+  +TVRY D   +   + A G LA   QHE+DHLNG LFID +
Sbjct: 57  LSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGELFIDKM 112


>gi|15596319|ref|NP_249813.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|9947041|gb|AAG04511.1|AE004542_7 probable peptide deformylase [Pseudomonas aeruginosa PAO1]
          Length = 147

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+           A    P + +NP++    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLL 130
            +D         + G +
Sbjct: 121 GLDPQDSRSTAASKGSM 137


>gi|284006808|emb|CBA72075.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 219

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMV---------FINPKIITFSDDFSVYQEGCLS 96
           GLAA Q+G  +++V+I +   A  K   V                  +       EGC S
Sbjct: 86  GLAAPQVGYPFKIVIIQIPPEAKEKRKDVYDTLSPTILINPVYTPILNAGQIKDWEGCFS 145

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           IP+   +V R   I         +    +A G LA  +QHE+DHLNG L+ID+L    R 
Sbjct: 146 IPNKMGEVYRYNEIYYEAYTLEGKKISAHAKGFLARLIQHEIDHLNGKLYIDYLCDDCRF 205

Query: 157 MITKKMSKLVQLRD 170
           + T +   ++++ +
Sbjct: 206 VSTTEALNIMKIEE 219


>gi|213425785|ref|ZP_03358535.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213618713|ref|ZP_03372539.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 53

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 1   NPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 49


>gi|238809638|dbj|BAH69428.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 195

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIG 53
            LV  P+ ILR+ S+ ++  ++ +   L   M+  +  +           G+G+AA+Q G
Sbjct: 12  KLVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL----------SIPDYRAD 103
           +  R+  I++ +       +      +I      +   E  L          +I +    
Sbjct: 72  IPKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGY 131

Query: 104 VKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R   I +        + +        A   QHE DHL G LFID +++
Sbjct: 132 VYRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINK 181


>gi|294660577|ref|NP_853423.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)]
 gi|298286800|sp|Q7NAK8|DEF_MYCGA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|284812240|gb|AAP56991.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)]
 gi|284930920|gb|ADC30859.1| peptide deformylase [Mycoplasma gallisepticum str. R(high)]
          Length = 196

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML           E      GIG+AA Q+G
Sbjct: 12  LVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  S + +     +       D    V RS  +
Sbjct: 72  LNQRFFYVHFTDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131

Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D    +   I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176


>gi|294669088|ref|ZP_06734174.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309080|gb|EFE50323.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 91

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           +IT  +  + Y+EGCLS+P     V R+  +TV  +D   +   + ADGLLA C+QHELD
Sbjct: 1   MITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALDEKGEKFTLEADGLLAICIQHELD 60

Query: 140 HLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           HL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 61  HLMGIVFVEHLSQLKQGRIKTKLKKRQK 88


>gi|225405389|ref|ZP_03760578.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme
           DSM 15981]
 gi|225043091|gb|EEG53337.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme
           DSM 15981]
          Length = 160

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 14/167 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDG-----IGLAAVQIGVL 55
           + K +++  +P L  +S  + E+  +++  L  ++ + M            +AA QIGV 
Sbjct: 1   MIKEILLLGNPALYEISEAVREEELTEMAALERDLHDTMMEFRRIYKAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++ +++ +      P++ INP +     +     + C+S P     V R     + Y 
Sbjct: 61  KRVLYMNVGE------PVLLINPVLEFPDGEMMEVMDDCMSFPGLLVKVDRYRRCRIHYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D N Q + +  +G L+  LQHE DHL+GIL              +KM
Sbjct: 115 DRNWQDEEMELEGDLSELLQHEYDHLDGILATMRAKDS--RAFYRKM 159


>gi|167626562|ref|YP_001677062.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596563|gb|ABZ86561.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 201

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +S+  N+I  M E M   +GIGLAA QIG  Y++ +I+      R
Sbjct: 13  NEVLYQRCKPVNDIQSSETQNIIAEMYEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 71

Query: 70  K--------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +              S +     ++ + R  +     I     + + + 
Sbjct: 72  YPLSFDSVPFQVFINPKITKASEKRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGKK 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
                D + A   QHE +HL G +++D
Sbjct: 132 ITGKLDSIAAVIFQHEFNHLLGSVYVD 158


>gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304]
 gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304]
          Length = 230

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 33/174 (18%)

Query: 4   KPLVIFPDPILRRVS-------RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
            P+V   +P+LR  +       +P       +  L   M   M +  G+GLA  QIG+  
Sbjct: 29  LPIVQMGEPVLRLKTVAYCGQLKP-----KTLEQLKKVMRRTMLNAPGVGLAGPQIGLGL 83

Query: 57  RLVVIDLQ---------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95
            L V++                                + INP      D  + + EGCL
Sbjct: 84  SLAVVEDHIRDLSDDEQAEADEAAASADPRGIADFPFHIIINPWYEPMDDASASFFEGCL 143

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           S   Y+A  KR   I   + D +A           A   QHE DHL G ++ID 
Sbjct: 144 SFDGYQAVRKRWLNIKAHWFDEDAVEHEAELHQWPARIFQHETDHLKGEVYIDK 197


>gi|126650157|ref|ZP_01722390.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593329|gb|EAZ87291.1| peptide deformylase [Bacillus sp. B14905]
          Length = 192

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQIGVLYRLVV 60
           LR+ ++ +   +  +  +++ +ML+ + ++               GL+A QIGV  R+  
Sbjct: 23  LRKQTQDVAIPVPLEDRHILLSMLQYLKNSQDPILIKKYKLRSGSGLSANQIGVDKRMFA 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMDCN 118
           +  ++H  +   M      +    +   + +              V R   I V+  + +
Sbjct: 83  VLFENHDQKHEMMFINPKVMSHSFNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYNID 142

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            Q  I+   G  +  +QHE+DHLNGI+F D +++
Sbjct: 143 GQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176


>gi|284931676|gb|ADC31614.1| peptide deformylase [Mycoplasma gallisepticum str. F]
          Length = 196

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML           E      GIG+AA Q+G
Sbjct: 12  LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  S + +     +       D    V RS  +
Sbjct: 72  LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131

Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D    +   I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176


>gi|224065146|ref|XP_002190853.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 131

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 14/118 (11%)

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGC 94
           A Q+GV  R+   +       + P        I                        EGC
Sbjct: 1   APQLGVPLRVFAAEKPPARCARYPPALRQAHRIEPFPLRVLVNPALRILDSRLVTGPEGC 60

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            SI  + A V R   + V  +D         A G  A  +QHE+DHL+GIL+ID +  
Sbjct: 61  ASIHGFSAYVPRHWAVHVSGVDELGVPVSWEASGWAARIIQHEMDHLDGILYIDRMEP 118


>gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
 gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
          Length = 188

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   +PILR  +  ++  N    +   +++ +++VM     +GL+A Q+GV  +++ ++
Sbjct: 12  VVPVGNPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVE 71

Query: 63  LQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                    P               +FINPK+        V+ EGC S+P ++A+V R  
Sbjct: 72  CTRKQLDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYY 131

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +  +D           G  A  LQHE++HL G L+ID +  
Sbjct: 132 GVNITGLDREGMPVAWQVTGWPARILQHEVEHLRGDLYIDIMDS 175


>gi|260221950|emb|CBA31026.1| hypothetical protein Csp_C26490 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 397

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M   P++ +PD  L  V++P+ +++  I  L  +MLE MY   GIGLAA QI V  R++V
Sbjct: 29 MALLPILCYPDTRLHTVAKPVSQVDDRIRTLTADMLETMYDAKGIGLAATQIDVHERVIV 88

Query: 61 IDLQDHAHRKN 71
          ID+ +   +  
Sbjct: 89 IDVSEDRDQPM 99


>gi|254456880|ref|ZP_05070308.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
 gi|207085672|gb|EDZ62956.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
          Length = 267

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 6/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K +  +P          +   N ++  LI ++ + +       LAA QIG    ++V+
Sbjct: 1   MVKEITKYPTKPSLEFGANVRFFNDELFALIQDLKDTIEVNSLDALAAFQIGSPLSVIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         +    +   +      E     P   A  KR   IT+ Y D +A  
Sbjct: 61  KKGGEFLE------LINPRVLKREGSVEPVETTAYFPGMSAKTKRYEKITLMYEDRDATQ 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + + ADG LA  LQ ++D+  G  F   L + ++ +   K+ 
Sbjct: 115 KFLEADGELAITLQRKVDYTFGSHFRFRLDKDEQKLFDSKLE 156


>gi|68068927|ref|XP_676374.1| formylmethionine deformylase [Plasmodium berghei strain ANKA]
 gi|56496040|emb|CAH95054.1| formylmethionine deformylase, putative [Plasmodium berghei]
          Length = 122

 Score = 70.6 bits (171), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +VI+P+PILR+ S  +   + ++ NLI  M + MY + GIGL+A Q+ +  R++V + 
Sbjct: 60  LKIVIYPNPILRQKSEEVIYFDDNLKNLIRRMFKTMYESKGIGLSAPQVNINKRIIVWNA 119

Query: 64  QDH 66
              
Sbjct: 120 LYE 122


>gi|320527454|ref|ZP_08028635.1| peptide deformylase [Solobacterium moorei F0204]
 gi|320132167|gb|EFW24716.1| peptide deformylase [Solobacterium moorei F0204]
          Length = 195

 Score = 70.6 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 21/170 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           ++   +P++R  S  +   ++ +   L+ +ML+ +  +              +G++A+Q+
Sbjct: 15  IIKDTNPLIREKSELVSLPLSKEDETLLRDMLQYVKDSTDEEKATKLNLRPAVGISAIQV 74

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVK 105
           G+  R+  +   +     N + +    +       SV        +       ++R  V 
Sbjct: 75  GIKKRMCAVAFDETDKDGNMVKYEFMLVNPKIVSRSVQPAYLESGEGCLSVENEHRGYVV 134

Query: 106 RSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R+A +T+R  D    Q   I A G +A  LQHELDH++GILF DH+++ +
Sbjct: 135 RNARVTIRAFDLVQNQDVEIRARGYIAIVLQHELDHMDGILFYDHINKKE 184


>gi|38049247|gb|AAR10418.1| putative peptide deformylase [Enterococcus faecium]
          Length = 160

 Score = 70.6 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 34  NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---Y 90
           ++ +      G+GL+A QIG+  R+ V  L D   +K+    INPKII+ S         
Sbjct: 25  DLSKKYKLRAGVGLSANQIGLNKRMFVAYLTDEKGKKHEYTLINPKIISHSVSMIYLSPS 84

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +       D +  V R   I V+  +   +  ++   G  +  +QHE+DHLNGI+F + +
Sbjct: 85  EGCLSVDRDIKGFVPRYERIKVKGFNLEGEEIVLKLKGYSSIVIQHEIDHLNGIMFYERI 144

Query: 151 SRL 153
           ++ 
Sbjct: 145 NKE 147


>gi|184155075|ref|YP_001843415.1| peptide deformylase [Lactobacillus fermentum IFO 3956]
 gi|260663619|ref|ZP_05864508.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
 gi|238692958|sp|B2GBA3|DEF_LACF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|183226419|dbj|BAG26935.1| formylmethionine deformylase [Lactobacillus fermentum IFO 3956]
 gi|260551845|gb|EEX24960.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
          Length = 189

 Score = 70.2 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAAVQIGVLYRLV 59
           +LR  +  +   +  +   L  +++E +  +               GLAA Q+ V  ++ 
Sbjct: 16  VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNVSKQMA 75

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVKRSAFITV 112
            + +       +  +F +  I       SV        +       D    V R   IT+
Sbjct: 76  AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +Y D   +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175


>gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus]
          Length = 238

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  IE       D   +I +++ +M S D  G++  QIG+ +++  I+  
Sbjct: 51  QIGDPVLRGHAMKIEPEVIKLEDFQKVITHLINIMRSYDACGMSGPQIGLPWQIFAIEHT 110

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               +                  +FINP++        +  EGC S+  Y A V R+  I
Sbjct: 111 MEHMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGYSAAVPRAYEI 170

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  ++ +A+       G  A   QHE DHL G L+ID + 
Sbjct: 171 EITALNASAEQFTWRGRGWSARIAQHEYDHLQGELYIDKMD 211


>gi|295103440|emb|CBL00984.1| N-formylmethionyl-tRNA deformylase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 136

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P++   DP  L + S P    ++ +  +L++ +    ++   +G+AA  IGVL R++
Sbjct: 1   MIQPIMH--DPLFLAQKSAPATPEDAPVARDLLETL--TAHADGCVGMAANMIGVLKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ +D               +          E      +     KR   I V+Y   + 
Sbjct: 57  AVEAEDGYLVLF-------NPVILKKSGQYEAEEGCLSLEGVRKTKRWQSIKVQYQTMDG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I    G  A  +QHE+DH +GIL 
Sbjct: 110 KPRIKTFTGWTAQIIQHEIDHCDGILI 136


>gi|255523790|ref|ZP_05390755.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|255512493|gb|EET88768.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
          Length = 165

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 13/169 (7%)

Query: 2   VKKPLVIFPDPILRRVS-----RPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
           + K +++  +  L + S       ++ I   +++L D +++     + G  +AA QIGV 
Sbjct: 1   MLKEILLLGNDALYKKSLLVQKEELDSIKGTVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P+VFINP +   + +     + C+S P+    V R    TV Y 
Sbjct: 61  KRLIYMYIDK------PIVFINPILKFDNKEIMEVMDDCMSFPNLLVKVNRYKECTVMYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +   + I  +G L+  +QHE DHL+GIL        K     KK SK
Sbjct: 115 DIDFIDRTIKFEGNLSELIQHEYDHLDGILATMRAIDNK-SFYLKKQSK 162


>gi|227514799|ref|ZP_03944848.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
 gi|227086847|gb|EEI22159.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
          Length = 189

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAAVQIGVLYRLV 59
           +LR  +  +   +  +   L  +++E +  +               GLAA Q+ +  ++ 
Sbjct: 16  VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNISKQMA 75

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVKRSAFITV 112
            + +       +  +F +  I       SV        +       D    V R   IT+
Sbjct: 76  AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +Y D   +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175


>gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma gallisepticum]
 gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma gallisepticum]
          Length = 204

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML           E      GIG+AA Q+G
Sbjct: 20  LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 79

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  S + +     +       D    V RS  +
Sbjct: 80  LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 139

Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D    +   I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 140 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 184


>gi|238061746|ref|ZP_04606455.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237883557|gb|EEP72385.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 509

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           +V     +LR+ SR  +         ++   + + +  + E+   + G+G+AA Q+G+ +
Sbjct: 337 IVQRGADLLRQPSRQFDLPAEAGVAREVVDRLGSALVRLDELHPFSKGVGIAATQLGLAW 396

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              V+   D      P+V +NP+++  S D     EGCLS  D+R  V RS  I V +  
Sbjct: 397 AAAVVRPPD--RAAEPVVLLNPRVVDSSPDTDEQYEGCLSFFDHRGLVPRSLRIDVEHAQ 454

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 455 WDGGRLITSFEFAMARLVAHEIDHLEGRLYVDRMTP 490


>gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106]
 gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106]
          Length = 143

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/125 (40%), Positives = 72/125 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ I +++ D   LI  ML+ MYS DGIGLAA Q+GV  +L+VID + 
Sbjct: 19  IHYLGDRVLRQSAKRISRVDDDTRRLIREMLQTMYSADGIGLAAPQVGVQKQLIVIDCEP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P++ INP I   S + S +QEGCLSIP    DV R   I V + D   + + I 
Sbjct: 79  DNAATPPLILINPTIKKSSQEISPFQEGCLSIPGVYMDVTRPEVIEVSFKDETGRPRTIR 138

Query: 126 ADGLL 130
           A+ LL
Sbjct: 139 ANELL 143


>gi|88606748|ref|YP_505874.1| peptide deformylase, truncation [Anaplasma phagocytophilum HZ]
 gi|88597811|gb|ABD43281.1| peptide deformylase, truncated [Anaplasma phagocytophilum HZ]
          Length = 91

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 55/75 (73%)

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +EGCLS+P+ R  V R   + ++Y D + + +I+ A GLL+ CLQHE+DHLNG +FI H
Sbjct: 10  MEEGCLSVPNQRELVVRPERVVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFIKH 69

Query: 150 LSRLKRDMITKKMSK 164
           +S+LKRD++ +KM K
Sbjct: 70  ISKLKRDLVMQKMRK 84


>gi|290476474|ref|YP_003469379.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175812|emb|CBJ82615.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 62

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + V  +D + +  ++ ++  L+  +QHE+DHLNGI+FID+LS LKR M  KK+ K +  +
Sbjct: 1   MKVEALDRHGKAMVVESEDFLSIVMQHEIDHLNGIVFIDYLSPLKRQMALKKVKKFLSNK 60


>gi|13637693|sp|Q48661|DEF_LACLA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 196

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V+  +   ++ + + L + ML+ ++++             G+GLAA Q
Sbjct: 6   DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----------------QEGCL 95
           +G+L +++ + + +          I PK      +                    +    
Sbjct: 66  LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 125

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    V R A +TV Y +   + + I      A C+QHE+DH NG++F DH++
Sbjct: 126 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 181


>gi|116511359|ref|YP_808575.1| peptide deformylase [Lactococcus lactis subsp. cremoris SK11]
 gi|125623399|ref|YP_001031882.1| peptide deformylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|806487|gb|AAC41454.1| ORF211 [Lactococcus lactis subsp. cremoris]
 gi|116107013|gb|ABJ72153.1| N-formylmethionyl-tRNA deformylase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|124492207|emb|CAL97136.1| putative membrane protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070146|gb|ADJ59546.1| peptide deformylase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 211

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V+  +   ++ + + L + ML+ ++++             G+GLAA Q
Sbjct: 21  DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----------------QEGCL 95
           +G+L +++ + + +          I PK      +                    +    
Sbjct: 81  LGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    V R A +TV Y +   + + I      A C+QHE+DH NG++F DH++
Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196


>gi|160943037|ref|ZP_02090275.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445731|gb|EDP22734.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii
           M21/2]
          Length = 136

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P++   DP  L + S P    ++ +  +L+D +    ++   +G+AA  IGV  R++
Sbjct: 1   MIQPIMH--DPLFLAQKSAPATPEDAPVARDLLDTL--TAHADGCVGMAANMIGVRKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ +D               +          E      +     KR   I V+Y   + 
Sbjct: 57  AVEAEDGYLVLF-------NPVILKKSGQYEAEEGCLSLEGVRKTKRWQSIKVQYQTMDG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I    G  A  +QHE+DH +GIL 
Sbjct: 110 KLRIKTFTGWTAQIIQHEIDHCDGILI 136


>gi|159040197|ref|YP_001539450.1| formylmethionine deformylase [Salinispora arenicola CNS-205]
 gi|157919032|gb|ABW00460.1| formylmethionine deformylase [Salinispora arenicola CNS-205]
          Length = 187

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61
            + ++  P  +L R    ++    + + L  +++  M  +   +GLAA QIGV  R+  +
Sbjct: 23  VRQVLSAPATVLSRAGGDVDPTAEETVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82

Query: 62  DLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DCN 118
           D+  HA          +   ++  +  + V +EGC+S+PD   DVKR+  + V       
Sbjct: 83  DVTGHAKAAIVHGAFVLCNAVVVAASRWKVGREGCMSVPDLTGDVKRAGQLVVEGELPAT 142

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +   +  +   A  LQHE+DH  G+LF+D +
Sbjct: 143 GKAVRLVTNAFEARALQHEIDHCAGLLFLDRV 174


>gi|15672542|ref|NP_266716.1| peptide deformylase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491026|ref|YP_003353006.1| peptide deformylase [Lactococcus lactis subsp. lactis KF147]
 gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase [Lactococcus lactis subsp. lactis Il1403]
 gi|281374784|gb|ADA64304.1| Peptide deformylase [Lactococcus lactis subsp. lactis KF147]
 gi|326406061|gb|ADZ63132.1| peptide deformylase [Lactococcus lactis subsp. lactis CV56]
          Length = 211

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V+  +   ++ + + L + ML+ ++++             G+GLAA Q
Sbjct: 21  DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----------------QEGCL 95
           +G+L +++ + + +          I PK      +                    +    
Sbjct: 81  LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    V R A +TV Y +   + + I      A C+QHE+DH NG++F DH++
Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196


>gi|145596629|ref|YP_001160926.1| formylmethionine deformylase [Salinispora tropica CNB-440]
 gi|145305966|gb|ABP56548.1| formylmethionine deformylase [Salinispora tropica CNB-440]
          Length = 506

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNML-------EVMYSTDGIGLAAVQ 51
           M    ++     +LR+ +RP +    +      +D +        E+   + G+G+AA Q
Sbjct: 329 MRSLGILQHDADLLRQPTRPFDLPREEEVAQQAVDRLTAALVRLDELHPFSKGVGVAAPQ 388

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+     V+   D      P+V +NP+++  + D     EGCLS  D R  V R   I 
Sbjct: 389 LGIGRAAAVVRPPD--RGGEPVVLLNPRVVDAAPDSDEQYEGCLSFFDQRGLVPRPLRID 446

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V +   +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 447 VEHTHLDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 487


>gi|156303056|ref|XP_001617464.1| hypothetical protein NEMVEDRAFT_v1g78625 [Nematostella vectensis]
 gi|156193964|gb|EDO25364.1| predicted protein [Nematostella vectensis]
          Length = 135

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
          +  P+  + +P+LR+VS  I K   ++   I +M E MY   G+GLAA Q+G+  RL VI
Sbjct: 9  MILPIYGYGEPVLRKVSEEITKEYPNLKETIADMFETMYQAYGLGLAAPQVGLPIRLFVI 68

Query: 62 DLQD 65
          D + 
Sbjct: 69 DTEP 72


>gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864]
          Length = 196

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + L+   +  LR  SR +      +S    LID M+  M  T+G+G+AAVQ+G    +  
Sbjct: 19  RGLLAIGEDSLRLPSRQVSLDELRSSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIAC 78

Query: 61  IDLQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           I+                         V +NP+++  S D     EGCLS+P  +A V R
Sbjct: 79  IEFTAKHLAEATPEMAATHKMEAVPLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFR 138

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + +  +D N   Q +   G  A    HE+DHL G LF D + R
Sbjct: 139 PRHVAIDCLDRNGAPQTLKLSGWSARIAMHEVDHLKGELFTDKMER 184


>gi|118386952|ref|XP_001026593.1| polypeptide deformylase family protein [Tetrahymena thermophila]
 gi|89308360|gb|EAS06348.1| polypeptide deformylase family protein [Tetrahymena thermophila
           SB210]
          Length = 318

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----------IDL 63
           L     P++     + + I N+      +  + LAA QIG+  R +V          + +
Sbjct: 92  LESKCLPVQGFTQTLKSEILNLKYHAEVSGRVNLAANQIGIPKRFIVLAKPDYLYKRVWV 151

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D+   ++    +NP+I+          E     P  R    R   I V+Y++   +   
Sbjct: 152 NDNLDIQHLHALVNPRILDKDKFMEYDWEQTACFPTVRFRRLRYHHILVQYLNEQMEQVE 211

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  +G  +   Q  LDHLNGI+  D +  +
Sbjct: 212 VEMNGWESRLFQQSLDHLNGIIPFDEVKNM 241


>gi|70934701|ref|XP_738539.1| formylmethionine deformylase [Plasmodium chabaudi chabaudi]
 gi|56514841|emb|CAH86596.1| formylmethionine deformylase, putative [Plasmodium chabaudi
          chabaudi]
          Length = 132

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 40/78 (51%)

Query: 4  KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            +V++P+P+LR+ S  +   + ++ +L+  M + MY + GIGL+A Q+ +  R++V + 
Sbjct: 18 LKIVMYPNPVLRQKSEEVLYFDDNLKDLVRRMFKTMYESKGIGLSAPQVNISKRIIVWNA 77

Query: 64 QDHAHRKNPMVFINPKII 81
                +          I
Sbjct: 78 LYEKRDEKNERVFINPSI 95


>gi|237757000|ref|ZP_04585457.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690843|gb|EEP59994.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 121

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           AA Q+    R +++D     H+ N +    + ++   I  ++   +++EGC+S+PDY  +
Sbjct: 1   AAPQVNNPIRAIIVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEIIFREGCMSVPDYTGN 60

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR  +I V   D N        +G  A  +QHE+DHL G +FI+ +   K D+  +K+ 
Sbjct: 61  VKRFYYIKVEAQDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVY 119

Query: 164 K 164
           K
Sbjct: 120 K 120


>gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB]
 gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB]
          Length = 189

 Score = 67.9 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 13  ILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ILR  SR +      +    I  L+D  LE     D +GLAA QIG+  R+V+   +   
Sbjct: 23  ILRTPSRDLPIPLSREARDQIQTLVDAFLE---RDDALGLAAPQIGINRRIVIFRNKGFD 79

Query: 68  HRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       + INP+I     +     EGCLS P  + +V R   + VR  D +   
Sbjct: 80  EEGWSKKEKDYDLLINPRITQTRGELVKGAEGCLSCPSIQVEVNRFPEVKVRAFDRHGNR 139

Query: 122 QIIYADGLLATCLQHELDHLNGILFID-----HLSRLKRDMITK 160
                   LA   QHELDHL G L +D     +  R K+    +
Sbjct: 140 ISKRYADFLARVAQHELDHLEGKLIVDCEGPVYFPREKKAFFER 183


>gi|145531163|ref|XP_001451350.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419001|emb|CAK83953.1| unnamed protein product [Paramecium tetraurelia]
          Length = 219

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 15/169 (8%)

Query: 6   LVIFPDP---ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           ++   D     + + ++PI+ ++  +  +I  +       + + L+  QIG  Y++ V+ 
Sbjct: 20  ILRIGDKDYQKITQQTQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFVVL 79

Query: 62  -------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                     ++    + M  INP+ +  S    V  E C S P     V+R   I  ++
Sbjct: 80  KHMKKNQWCYNNLSSSDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEYQF 139

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++   +       G  A  +QHE+DHL GI     L    + ++  K  
Sbjct: 140 INEKFKLIKQTLSGFEARVVQHEMDHLEGIT----LDSPDKMLLESKRE 184


>gi|302024517|ref|ZP_07249728.1| peptide deformylase [Streptococcus suis 05HAS68]
          Length = 155

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSV 89
           M E M    G+GLAA QI V  R++ +     + ++                      SV
Sbjct: 12  MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 71

Query: 90  YQEGCLSIPDY-------RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            +                +  V R A +TV YMD N +   I   G  A  +QHE+DHLN
Sbjct: 72  QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 131

Query: 143 GILFIDHLSRL 153
           GI+F D +   
Sbjct: 132 GIMFYDRIDPE 142


>gi|239625206|ref|ZP_04668237.1| Def1 [Clostridiales bacterium 1_7_47_FAA]
 gi|239519436|gb|EEQ59302.1| Def1 [Clostridiales bacterium 1_7_47FAA]
          Length = 160

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 13/167 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55
           ++K +++   P L  V   + +     +  + +++ +           G  +AA QIGV 
Sbjct: 1   MEKTILLLGHPDLYEVCSEVTEEELPWMAEVKEDLKDTLLAFRKRYGVGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++        H   P++FINP++     +     + C+S PD    V+R     + Y 
Sbjct: 61  KRVIY------RHLDTPVLFINPRLEFPDKEEMEVMDDCMSFPDLLVRVRRYKRCIIHYR 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +   +  +G +A  +QHE DHL+GIL         R  + K+ 
Sbjct: 115 DEQWKECSLAFEGDMAELIQHEYDHLDGILATMRAID-DRAFVMKEY 160


>gi|169334954|ref|ZP_02862147.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257692|gb|EDS71658.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM
           17244]
          Length = 158

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55
           + K +++  +P L +VS+ +++    +  N+  ++ + + +       G  +AA QIG+ 
Sbjct: 1   MIKEILLLGNPNLYKVSKEVKEEEIQLLKNIEIDLHDTLMNYRKVHGAGRAIAAPQIGIE 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++ +++       NP +           +     + C+S P+    V+R     + Y 
Sbjct: 61  KRILYMNIDKPILIVNPKLTFPD------SEKIQVMDDCMSFPNLTVKVERYKNCILNYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           D N     +     L+  +QHE DHL+GIL    
Sbjct: 115 DRNFSDCKMILKDDLSELIQHEYDHLDGILATMR 148


>gi|169350936|ref|ZP_02867874.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552]
 gi|169291998|gb|EDS74131.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552]
          Length = 189

 Score = 67.5 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 22/173 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48
             K ++   +  +R VS+ +   ++ D  +L+  M E                   +G+A
Sbjct: 3   TMKDIIDDSNKKIREVSKEVPLPLSDDDRDLLFKMHEFLVNSQDPELSKKYDLRPAVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFIN--------PKIITFSDDFSVYQEGCLSIPDY 100
           A+Q+G+  R+  I + D+  + N +   +              +      +       + 
Sbjct: 63  AIQLGIPKRMCAIHVLDYDSKGNVVKANDYALVNPKIVSYTQKNSFLRDGEGCLSVNKEV 122

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  V R A +TV   D    Q   I A G L+ CLQHELDH  G LF D +++
Sbjct: 123 QGYVPRHAKVTVEGYDLLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175


>gi|194323397|ref|ZP_03057174.1| polypeptide deformylase [Francisella tularensis subsp. novicida
           FTE]
 gi|194322252|gb|EDX19733.1| polypeptide deformylase [Francisella tularensis subsp. novicida
           FTE]
          Length = 186

 Score = 67.1 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 16  RVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--------DLQDH 66
           +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I             
Sbjct: 3   QKCKPVADIQSAEIQNIIIEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNARYPFSF 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                 +              S +     ++ + R  +     I     + + +      
Sbjct: 62  DSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEKITGKL 121

Query: 127 DGLLATCLQHELDHLNGILFID 148
           D + A   QHE +HL G +++D
Sbjct: 122 DSIAAVIFQHEFNHLLGSVYVD 143


>gi|307329049|ref|ZP_07608216.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885244|gb|EFN16263.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 500

 Score = 67.1 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 15/159 (9%)

Query: 3   KKPL--VIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQ 51
            + +  V   DPIL + +RP    +          ++++  +    V     G+G+AA Q
Sbjct: 322 MRDIGMVQEGDPILTKTARPFALPDEAEDARRVVAELISAAERAATVHVFGKGMGVAAPQ 381

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IG+     ++   +          +NP+I+  S +     EGCLS  D R  V R   I+
Sbjct: 382 IGIDRAAAIVRTPEGETLT----LLNPRIVEESPEADEQYEGCLSFFDVRGKVPRPLAIS 437

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V + D + Q +I   +  +A  + HE+DHL+G+L+   +
Sbjct: 438 VEHQDIDGQQRITIFERGMARLVAHEVDHLHGLLYRARM 476


>gi|70726701|ref|YP_253615.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447425|dbj|BAE05009.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 162

 Score = 67.1 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV    P+L + ++PI+  ++ + +L+ ++ + +Y+ +   L A QIG+  ++ +
Sbjct: 1   MAIQKLVQSTHPVLTKQAQPIKAYDATLKDLLLDLEDTLYAEEASALCAPQIGISKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I        +  +   NPKI + S+D  +  EG +++P    +V+RS  IT+   D    
Sbjct: 61  I----DMEVEGLLQLFNPKIKSESNDKIIDLEGSVNLPGIYGEVERSKMITIEANDLEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F      L
Sbjct: 117 TIELTAYDDVARMILHIVDQMNGIPFTKRAQHL 149


>gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group]
 gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group]
          Length = 155

 Score = 67.1 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV--------------FINPKI 80
           M+ VM    G+GLAA QIGV  +++V++         P                 INPK+
Sbjct: 1   MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
            T S   +++ EGCLS+  YRA V+R   + V  +D N +   + A G  A  LQHE DH
Sbjct: 61  KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120

Query: 141 LNGILFIDHLSR 152
           L G L++D +  
Sbjct: 121 LEGTLYVDTMVP 132


>gi|319937459|ref|ZP_08011864.1| peptide deformylase [Coprobacillus sp. 29_1]
 gi|319807299|gb|EFW03908.1| peptide deformylase [Coprobacillus sp. 29_1]
          Length = 189

 Score = 66.7 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 22/173 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLI------------DNMLEVMYSTDGIGLAA 49
            K ++    P++R +S+P+E  I  +   L+            + M E  +    +G+AA
Sbjct: 4   MKDIIDDHHPLIREISQPVEMPICQEDEQLLLDMHEFLVNSQDEEMSEKYHLRPAVGIAA 63

Query: 50  VQIGVLYRLVVID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           VQ+GVL R+  I             A     +                 +       D  
Sbjct: 64  VQVGVLKRMCAIHVLSYDDDGNISKADDYALVNPKIVSYTEKGSYLKDGEGCLSVNDDVE 123

Query: 102 ADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R A +TV+  D    ++  I A G L+ CLQHELDH +G LF D +++ 
Sbjct: 124 GLVPRHAKVTVKGYDVLTHKNVTIVARGYLSICLQHELDHFDGKLFYDRINKE 176


>gi|289178283|gb|ADC85529.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 188

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 7/147 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++ +V      L R S P +  +     +  ++ E    +  + +G+AA  IG   R+ 
Sbjct: 47  MQRTIVTD-TSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRV- 104

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP+I     ++   +       +      R   I V Y     
Sbjct: 105 -IAFVDEGLGSAITVMFNPQITAADGEYDACEGCLSLHGERH--TPRFRRIEVDYTTRKG 161

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NG+L 
Sbjct: 162 RARHATFTDWTAQIIQHEIDHCNGVLI 188


>gi|225550917|ref|ZP_03771866.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225380071|gb|EEH02433.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 198

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G       I   D A   + ++      K  +     +  +       D    V R+  +
Sbjct: 81  GWNKCATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|171920111|ref|ZP_02690482.2| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508474|ref|ZP_02689332.2| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701869|ref|ZP_02553797.2| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902473|gb|EDT48762.1| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675891|gb|EDT87796.1| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701174|gb|EDU19456.1| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 198

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P P+LR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPVLREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G   R   I   D A   + ++      K  +     +  +       D    V R+  +
Sbjct: 81  GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|183602062|ref|ZP_02963431.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682971|ref|YP_002469354.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190548|ref|YP_002967942.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195954|ref|YP_002969509.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218947|gb|EDT89589.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620621|gb|ACL28778.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248940|gb|ACS45880.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250508|gb|ACS47447.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793535|gb|ADG33070.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 142

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 7/147 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++ +V      L R S P +  +     +  ++ E    +  + +G+AA  IG   R+ 
Sbjct: 1   MQRTIVTD-TSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRV- 58

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP+I     ++   +       +      R   I V Y     
Sbjct: 59  -IAFVDEGLGSAITVMFNPQITAADGEYDACEGCLSLHGERH--TPRFRRIEVDYTTRKG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NG+L 
Sbjct: 116 RARHATFTDWTAQIIQHEIDHCNGVLI 142


>gi|309775748|ref|ZP_07670744.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916511|gb|EFP62255.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 184

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            +V   D I+R  S  ++  + ++   L+ +ML            E       +G+AA+Q
Sbjct: 7   DIVKDTDAIVRTKSEVVKLPLTAEDEALLMDMLSYVRDSQDAELAEANNLRPAVGIAAIQ 66

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109
           +GV  R++ + + +        +     I            +       ++   V R+A 
Sbjct: 67  LGVAKRMLAVVVPNDEDIDEYALVNPRIISESVQRAYLKNGEGCLSVEKEHEGIVPRAAR 126

Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           ITV+  D    Q   I A   LA  LQHE+DH +G LF D +++
Sbjct: 127 ITVKGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170


>gi|13358028|ref|NP_078302.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762059|ref|YP_001752550.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|23396555|sp|Q9PQ25|DEF_UREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083081|sp|B1AJA6|DEF_UREP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] - Ureaplasma urealyticum
 gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827636|gb|ACA32898.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 198

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G   R   I   D A   + ++      K  +     +  +       D    V R+  +
Sbjct: 81  GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|284036700|ref|YP_003386630.1| formylmethionine deformylase [Spirosoma linguale DSM 74]
 gi|283815993|gb|ADB37831.1| formylmethionine deformylase [Spirosoma linguale DSM 74]
          Length = 168

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 13/152 (8%)

Query: 5   PLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRL 58
            L++  DP L +   P+ +     +   + +L + M E+      G G+AA Q+G++ RL
Sbjct: 6   DLLLLGDPRLYQTCEPVLESELPLVPDWVADLHNVMEEIRAKYQFGRGIAAPQLGIMKRL 65

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +      +   P V INP+++  SD+     + C+S P+    V+R   +T+ Y D +
Sbjct: 66  IYL------NVDRPQVIINPELVAVSDETDELWDDCMSFPNLLVRVRRHKKLTLTYRDEH 119

Query: 119 AQHQIIYADGL-LATCLQHELDHLNGILFIDH 149
            Q          ++  +QHE DHLNG L    
Sbjct: 120 WQTHTWDVTDWRISELIQHEYDHLNGFLCTMR 151


>gi|194466630|ref|ZP_03072617.1| formylmethionine deformylase [Lactobacillus reuteri 100-23]
 gi|194453666|gb|EDX42563.1| formylmethionine deformylase [Lactobacillus reuteri 100-23]
          Length = 136

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + KP++     +L + + P  K +   + L +++++   ++  + +G+AA  IGV    +
Sbjct: 1   MIKPIIKD-HQLLGKKAIPTTKAD---LPLANDLIDTLNVHQAECVGMAANMIGVNKNAI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  +             NP+II  S  +   +             KR   ITV + + + 
Sbjct: 57  IARIGPFNVV-----MFNPQIIAKSHPYQTAEGCLSLSGTRP--TKRYKQITVNFRNQSW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q Q +      A  +QHE+DH NGI+ 
Sbjct: 110 QMQTLELTDFAAEIVQHEIDHCNGIII 136


>gi|185179123|ref|ZP_02555609.2| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024050|ref|ZP_02569693.2| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518296|ref|ZP_02556113.2| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195867564|ref|ZP_03079567.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225551606|ref|ZP_03772552.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184208960|gb|EDU06003.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019083|gb|EDU57123.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998245|gb|EDU67342.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660808|gb|EDX54062.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225379421|gb|EEH01786.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 198

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G   R   I   D A   + ++      K  +     +  +       D    V R+  +
Sbjct: 81  GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|224541764|ref|ZP_03682303.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525368|gb|EEF94473.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM
           15897]
          Length = 186

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQIGVLYR 57
           +P++R  S+ +   ++ +  + +  M             E      G+G+AA+QIG+  R
Sbjct: 9   NPLIREKSKEVTLPLSDEDRHTLMEMYQYLVDSQDEEKAEKYDLRPGVGIAAIQIGIPKR 68

Query: 58  LVVIDLQ--DHAHRKNPMVFINPKIITFSDDFS------VYQEGCLSIPDYRADVKRSAF 109
           +  I +   D                               +       D    V RSA 
Sbjct: 69  MCAIYIPAVDEEGNIVKCDQWALVNPRIVASTVKVAYLKNGEGCLSVPEDQPGIVPRSAK 128

Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +TV+  D    Q   I A G  A CLQHELDH  GIL+ DH ++ 
Sbjct: 129 VTVKGYDALTDQEVTIVARGFTAICLQHELDHFEGILYYDHFNKE 173


>gi|325279635|ref|YP_004252177.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324311444|gb|ADY31997.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 220

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 14  LRRVSRPIE--KINSDIMNLID-NMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           LR+ +  +   +I +++  ++   ML  +      G+G+AA Q+G+  RL+ +   D   
Sbjct: 50  LRQQAIELTPGEIRTELFQVLKQRMLATVNDSADPGVGIAAPQVGISRRLIAVQRYDKPG 109

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-------------- 114
                      I++ S++ S+ +EGCLS+PD   +V RS  I VRY              
Sbjct: 110 APFEFYINPG-IVSASEEQSLGKEGCLSVPDVVGEVWRSNEIVVRYIPELTSIKRMLSRE 168

Query: 115 -------------MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                             +       G  A   QHE+DHLNGILF D + + 
Sbjct: 169 KTDSTFKFEVKVEYRNTWEPVCDTIRGFTAVIFQHEIDHLNGILFTDKMIKE 220


>gi|209554459|ref|YP_002284908.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|209541960|gb|ACI60189.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 198

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G   R   I   D A   + ++      K  +     +  +       D    V R+  +
Sbjct: 81  GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|330798798|ref|XP_003287437.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum]
 gi|325082584|gb|EGC36062.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum]
          Length = 238

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 51/199 (25%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++   + +L++ +     K  SD+  L   ID M +      G G+AA QIG+  +L + 
Sbjct: 10  ILKVGNTVLKQKALAWTAKEMSDVKYLESVIDRMTK-EMGNVGTGIAAPQIGINKQLFLF 68

Query: 62  DLQDHAHRKNPMVFI--------------------------------------------- 76
           +        +   F                                              
Sbjct: 69  EFDSQGLPVHCPNFPLTAFFNPKVEIIEEDVYMPPPGFSITTNKKILNLKRYKKSLQTFE 128

Query: 77  -NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
            +  +   S++     E CLS+P+  A +KR+    + ++D   + ++I A+G++A C Q
Sbjct: 129 RSVPLKQTSNNTMEMYESCLSVPNIFAKIKRAKRCIITFLDITGKERVIDAEGIIAACFQ 188

Query: 136 HELDHLNGILFIDHLSRLK 154
           HE DHL G L +D L   K
Sbjct: 189 HEYDHLLGRLLVDRLDPKK 207


>gi|256847494|ref|ZP_05552940.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716158|gb|EEU31133.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 136

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + KP++   + IL +VS P +  +   + +  ++L+    +    +GLAA  IG+  R++
Sbjct: 1   MIKPIIHDQN-ILTKVSTPAQLSD---VKIAQDLLDTLQAHQESCVGLAANMIGIHKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I +            +NP+II     +   +              R   ITV++MD   
Sbjct: 57  AITIGPARVA-----MLNPEIINHQQPYQTEEGCLSLNGQRA--TTRYQTITVQFMDIQG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q I  +G  A   QHE+DH NGIL 
Sbjct: 110 HRQQITLNGFPAQIAQHEIDHCNGILI 136


>gi|223985568|ref|ZP_03635622.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM
           12042]
 gi|223962475|gb|EEF66933.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM
           12042]
          Length = 141

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + + +V   DPIL   SRP  +  ++ + +  ++ +    ++    G+AA  IG   R++
Sbjct: 5   MIREIVT--DPILL--SRPSREATAEDLAVAADLKDTLIAHADHCAGMAANMIGQSVRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + + D      P+V INP+II         +EGCLS+P  R   +R   + +RY D  +
Sbjct: 61  AVFVAD-----QPLVLINPQIIKAEGRKYTAEEGCLSLPGTR-RAQRFEKLQLRYQDEQS 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHELDH  GIL 
Sbjct: 115 RIKQRTFSGFTAQVIQHELDHCEGILI 141


>gi|209554070|ref|YP_002284901.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|209541571|gb|ACI59800.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 198

 Score = 65.6 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P P+LR V++ I+  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G   R   I   D     + ++      K  +     +  +       D    V R   +
Sbjct: 81  GWNKRATYIHFDDGNEEYHYLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|312870530|ref|ZP_07730648.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
 gi|311093927|gb|EFQ52253.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
          Length = 136

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP+    + ILR+VS+P  K +  +   + + L    +   +G+AA  IGV  R+++ 
Sbjct: 1   MIKPINRDVN-ILRQVSQPASKADLPVAQDLRDTL-TANADRCVGMAANMIGVTKRIIIA 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            L         +V  NP+I+  S  + V +              R   I VR+ +   + 
Sbjct: 59  SLGP-----LQVVMFNPQIVAKSGPYQVQEGCLSLSGQRS--TTRFQKIRVRFTNEQWEQ 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           Q +      A  +QHE DH NGIL 
Sbjct: 112 QELTFTAFPAEIIQHEFDHCNGILI 136


>gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group]
 gi|255673494|dbj|BAH91208.1| Os01g0636600 [Oryza sativa Japonica Group]
          Length = 198

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 58/101 (57%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V + 
Sbjct: 82  LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 141

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
                    +V +NP +   S    VY+E CLS P   A+V
Sbjct: 142 AGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANV 182


>gi|107025411|ref|YP_622922.1| aminotransferase, class IV [Burkholderia cenocepacia AU 1054]
 gi|105894785|gb|ABF77949.1| branched chain amino acid: 2-keto-4-methylthiobutyrate
           aminotransferase [Burkholderia cenocepacia AU 1054]
          Length = 496

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDG-----IGLAAVQIGV 54
           M  + ++      LR V+RP++ +    +      +   + +          +AA QIG+
Sbjct: 1   MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ +          P V +NP+I+  SD      + C+  PD    V+R A ++VRY
Sbjct: 60  GQRMIALA-----LDGWPDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114

Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151
              + +     A    ++  +QHE+DHL+G L  D  +
Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDRAT 152


>gi|171920852|ref|ZP_02932018.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178960|ref|ZP_02964717.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024017|ref|ZP_02996776.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518292|ref|ZP_03003815.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524344|ref|ZP_03004376.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867842|ref|ZP_03079842.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273805|ref|ZP_03206339.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225550531|ref|ZP_03771480.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551646|ref|ZP_03772592.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903056|gb|EDT49345.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209237|gb|EDU06280.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019044|gb|EDU57084.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998001|gb|EDU67098.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659819|gb|EDX53199.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660539|gb|EDX53796.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249560|gb|EDY74342.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225379461|gb|EEH01826.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379685|gb|EEH02047.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 198

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P P+LR V++ I+  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           G   R   I   D     + ++      K  +     +  +       D    V R   +
Sbjct: 81  GWNKRATYIHFDDGNEEHHYLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEKV 140

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 141 HVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|167756524|ref|ZP_02428651.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402]
 gi|167702699|gb|EDS17278.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402]
          Length = 189

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 22/174 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48
             K ++   +  +R VS+ +   I ++   L+  M E                   +G+A
Sbjct: 3   TMKDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSV---YQEGCLSIPDY 100
           A+Q+G+  R+  I + D     N         +NPKII+ ++  S     +       + 
Sbjct: 63  AIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEV 122

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  V R A +TV+  D    Q   I A G L+ CLQHELDH  G LF D +++ 
Sbjct: 123 QGYVPRYAKVTVKGYDVLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 176


>gi|154505120|ref|ZP_02041858.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149]
 gi|153794599|gb|EDN77019.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMY-----STDGIGLAAVQIGVL 55
           +++ +++  +P L  +S  +++   + + ++  +M + +         G  +AA QIGV 
Sbjct: 1   MERDILLLGNPRLYEISEEVKREELEELRSVFTDMFDCIRGIRRDYGFGRAIAAPQIGVQ 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ I          P V INP++    ++     + C+S P+    V+R     + Y+
Sbjct: 61  KRLICI------LTDQPYVIINPRLEFVGNEMMELMDDCMSFPNLLVRVRRYRRCILHYL 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D N + Q +Y +  ++  +QHE DHL+GIL        K  +I +
Sbjct: 115 DENWKEQEMYLEDDMSELIQHEYDHLDGILATMRAIDNKSFVIKQ 159


>gi|315931998|gb|EFV10951.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 327]
          Length = 74

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 46/74 (62%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
          + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1  MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62 DLQDHAHRKNPMVF 75
          ++ D    +   + 
Sbjct: 61 NIFDENDEQKKKIC 74


>gi|260584847|ref|ZP_05852592.1| peptide deformylase [Granulicatella elegans ATCC 700633]
 gi|260157504|gb|EEW92575.1| peptide deformylase [Granulicatella elegans ATCC 700633]
          Length = 137

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           +KK ++   DP  L + + P   I      +I ++ + +       +GLAA  IG    +
Sbjct: 1   MKKEIMK--DPFFLSQKAIPANPITD--KQVIVDLQDTLRANRDRCVGLAANMIGSHKAI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++              +NP I   S  +   +              R   I VRY D  
Sbjct: 57  IIVAAGPFDIV-----MVNPVITKKSQPYQTEEGCLSHTGMKS--TTRYQKIEVRYQDAT 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +          A  +QHE+DHL GIL 
Sbjct: 110 GKTHTGTFTEFTAQVIQHEIDHLQGILI 137


>gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 141

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84
           M     +GL+A Q+GV  +++V++  D                      V +NP +    
Sbjct: 1   MRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLD 60

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                + EGC S+  + A V R   + +  +D   +  +  A G  A  +QHE+DHL+G 
Sbjct: 61  SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGC 120

Query: 145 LFIDHLSR 152
           LFID +  
Sbjct: 121 LFIDKMDS 128


>gi|170737315|ref|YP_001778575.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3]
 gi|169819503|gb|ACA94085.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3]
          Length = 496

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDG-----IGLAAVQIGV 54
           M  + ++      LR V+RP++ +    +      +   + +          +AA QIG+
Sbjct: 1   MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ +          P V +NP+I+  SD      + C+  PD    V+R A ++VRY
Sbjct: 60  GQRMIALA-----LDGWPDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114

Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDH 149
              + +     A    ++  +QHE+DHL+G L  D 
Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDR 150


>gi|324017857|gb|EGB87076.1| conserved domain protein [Escherichia coli MS 117-3]
          Length = 48

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 1   EADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 45


>gi|257063393|ref|YP_003143065.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
 gi|256791046|gb|ACV21716.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
          Length = 140

 Score = 64.4 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 11/147 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60
           + + +V   D IL   S+P ++  ++   +++++++ + S     GLAA QIG   R+VV
Sbjct: 1   MIREIVTD-DEIL---SKPCDEGTAEDAAIVEDLIDTLKSLETAAGLAANQIGETKRIVV 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                      P    NP I    +  +V +E       Y    + +          N Q
Sbjct: 57  YLDMKDN----PHAMFNPVIKMALNPSTVAEECLSHEGQYVTVKRFAKINVAYQELINGQ 112

Query: 121 --HQIIYADGLLATCLQHELDHLNGIL 145
              +    +G  A  +QH +DH NG L
Sbjct: 113 LVDRKRKFEGWTAQVIQHLVDHCNGKL 139


>gi|310287644|ref|YP_003938902.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|311064553|ref|YP_003971278.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313140433|ref|ZP_07802626.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251580|gb|ADO53328.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|310866872|gb|ADP36241.1| Fms Peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313132943|gb|EFR50560.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 141

 Score = 64.4 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P +  N +      ++ + + +   + +G+AA  IGV  R++V   +++     
Sbjct: 12  LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVFQDKENNRNAI 71

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
                NP+II  SD F   +       D      R   ITV Y   + +      DG  A
Sbjct: 72  ---MFNPRIIAGSDPFDTAEGCLS--LDGERPTTRYQSITVTYQARSGREYTTAFDGFTA 126

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH+NGI+ 
Sbjct: 127 QIIQHEIDHVNGIII 141


>gi|224283284|ref|ZP_03646606.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 136

 Score = 64.4 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P +  N +      ++ + + +   + +G+AA  IGV  R++V   +++     
Sbjct: 7   LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVFQDKENNRNAI 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
                NP+II  SD F   +       D      R   ITV Y   + +      DG  A
Sbjct: 67  ---MFNPRIIAGSDPFDTAEGCLS--LDGERPTTRYQSITVTYQARSGREYTTAFDGFTA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH+NGI+ 
Sbjct: 122 QIIQHEIDHVNGIII 136


>gi|153880447|ref|ZP_02004994.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS]
 gi|152063089|gb|EDN65006.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS]
          Length = 47

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           +  +G+LA C+QHE+DHLNG LF+D+LS LKR 
Sbjct: 1   MTTEGVLAVCIQHEIDHLNGKLFVDYLSSLKRQ 33


>gi|237733122|ref|ZP_04563603.1| polypeptide deformylase [Mollicutes bacterium D7]
 gi|229383804|gb|EEO33895.1| polypeptide deformylase [Coprobacillus sp. D7]
          Length = 186

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49
            K ++   +  +R VS+ +   I ++   L+  M E                   +G+AA
Sbjct: 1   MKDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSV---YQEGCLSIPDYR 101
           +Q+G+  R+  I + D     N         +NPKII+ ++  S     +       + +
Sbjct: 61  IQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEVQ 120

Query: 102 ADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R A +TV+  D    Q   I A G L+ CLQHELDH  G LF D +++ 
Sbjct: 121 GYVPRYAKVTVKGYDILTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 173


>gi|148544448|ref|YP_001271818.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|184153812|ref|YP_001842153.1| peptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227363124|ref|ZP_03847259.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|325682770|ref|ZP_08162286.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
 gi|148531482|gb|ABQ83481.1| formylmethionine deformylase [Lactobacillus reuteri DSM 20016]
 gi|183225156|dbj|BAG25673.1| polypeptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227071842|gb|EEI10130.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|324977120|gb|EGC14071.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
          Length = 136

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP++     +L + + P  K +  +   + + L   +  + +G+AA  IGV    ++ 
Sbjct: 1   MIKPIIKD-QQLLAKKATPTTKADLPLATDLSDTLNA-HQAECVGMAANMIGVNKNAIIA 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +             NP+I+  S  +   +             KR   ITV++ + + Q 
Sbjct: 59  RIGPFNVV-----MFNPQIVAKSHPYQTTEGCLSLSGTRP--TKRYKQITVKFRNQSWQV 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           Q +      A  +QHE+DH NGI+ 
Sbjct: 112 QTLELADFAAEIIQHEIDHCNGIII 136


>gi|315931997|gb|EFV10950.1| polypeptide deformylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 102

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 50/82 (60%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            INP+II   ++     EGCLS+PD+  +VKR   I ++Y D   + + + A G LA  +
Sbjct: 4   IINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAI 63

Query: 135 QHELDHLNGILFIDHLSRLKRD 156
           QHE DHLNG LFI+ +S  KR 
Sbjct: 64  QHENDHLNGHLFIEKISFAKRQ 85


>gi|319957487|ref|YP_004168750.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511]
 gi|319419891|gb|ADV47001.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511]
          Length = 283

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K LV++PD  +      +    +  +  L++++ E M +     L A+Q+   + ++V
Sbjct: 1   MVKELVVYPDDRILS-CVDVRDFRDESLPRLLNDIEETMEAHGLNALTAMQVAHPFNIIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I  +D ++       INP+I+     F   +      PD    V R   I + Y D N Q
Sbjct: 60  IKKEDGSY----WELINPRILKKEGRFEHQE-STSYYPDIELTVPRYEKINLIYEDRNGQ 114

Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I  +   LA  +Q ++D L G   +D + +  R+ +   ++ 
Sbjct: 115 PHSIKIEDRELAALIQQQMDFLAGGTPLDRVDKNYREKVLTALAN 159


>gi|238923534|ref|YP_002937050.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238875209|gb|ACR74916.1| peptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 136

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K +V   DP  L + S    + +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVKKIVK--DPLFLAQKSVDATEPD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+              +   +IT        +EGCLS+   R    R   I V Y+D +
Sbjct: 56  IVVAAGPFQFA------MINPVITKKSGAYQTEEGCLSLEGVR-PCTRYQEIEVDYLDQS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NGI+ 
Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCNGIVI 136


>gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca]
          Length = 141

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 14/128 (10%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84
           M     +GL+A Q+GV  +++ ++  +                      VF+NP +    
Sbjct: 1   MRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLD 60

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                + EGC S+  + A V R   + +  +D   +  +  A G  A  +QHE+DHL G 
Sbjct: 61  SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGC 120

Query: 145 LFIDHLSR 152
           LFID +  
Sbjct: 121 LFIDKMDS 128


>gi|299116829|emb|CBN74941.1| chloroplast peptide deformylase (Partial) [Ectocarpus siliculosus]
          Length = 209

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P P LR  +  IE  + D+  L  +M ++MY+  G+GLAA Q+GV  RL+V + + 
Sbjct: 95  ILKYPHPALRAENDEIEVFDDDVKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEG 154

Query: 66  HAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
            A    +  + +NPKI+         +EGCLS P       
Sbjct: 155 DAKNWLDEAILVNPKIVASGKGRITAEEGCLSFPGMEGKKD 195


>gi|119025798|ref|YP_909643.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703]
 gi|118765382|dbj|BAF39561.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703]
          Length = 106

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
             ++  +       EGCLS+P      +R+ +  VR +D + +  ++   G++   LQHE
Sbjct: 17  NPVLEEASGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKPVVLEGHGIMGRMLQHE 76

Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DHL+G +++D L + +R    + M    +
Sbjct: 77  TDHLDGHVYLDRLEKEERREAMRYMRTHRK 106


>gi|23008036|ref|ZP_00049646.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 145

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%)

Query: 29  MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
             +  ++L+ + +   +GL A  IG   RLVVI LQ          +++P ++  S + +
Sbjct: 3   RAVSADVLDTLGAVSAMGLTAPHIGRPERLVVIRLQPDEPHAT---YVDPVVVWASAERA 59

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            + EG +S+P     V+R A + VRY D + +     A+GL A CLQHE+D L+GI +ID
Sbjct: 60  SHPEGSVSMPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQLDGIFWID 119

Query: 149 HLSRLKRDMITKKMSKLVQLR 169
            L+RL+RD + K+ +KL   +
Sbjct: 120 RLTRLRRDRVLKRFAKLKAQQ 140


>gi|221108715|ref|XP_002169101.1| PREDICTED: similar to CG31373 CG31373-PA, partial [Hydra
           magnipapillata]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 54/99 (54%)

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +       +  D +      VFIN +II    D   Y+EGCLSIP  RADV R  F+T+R
Sbjct: 17  INEGAETEEDIDPSLIDFKKVFINAEIIEEDGDEWAYEEGCLSIPGVRADVYRPEFVTIR 76

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y D +        +GL A  +QHE DH++GILF DHL+ 
Sbjct: 77  YFDTDWVEHTETYEGLAARIIQHEYDHIDGILFTDHLTS 115


>gi|238922278|ref|YP_002935792.1| hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750]
 gi|238873950|gb|ACR73658.1| Hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + K +V   DP  L + S    + +     ++ ++L+         +G+AA  IGV   +
Sbjct: 1   MVKKIVK--DPFFLAQKSVDATESD---KQVVTDLLDTLIANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+          P  F     +  +       E      +      R   I V Y+D N
Sbjct: 56  IVV-------AAGPFQFPMINPVITNKSGEYQTEEGCLSLEGVRPCTRYQDIEVDYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NG++ 
Sbjct: 109 FKKQHRKYSGWTAQIIQHEIDHCNGVVI 136


>gi|160935285|ref|ZP_02082667.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441643|gb|EDP19343.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC
           BAA-613]
          Length = 173

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVLYR 57
           + +++  +P L   S+ ++ +    +  + +++ +           G  +AA QIGV  R
Sbjct: 16  RTILLLGNPELYEASQEVKIEELHQMEQVREDLKDTLLAFRARYGVGRAIAAPQIGVKKR 75

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++        H   P++FINP++     +     + C+S PD    VKR     + Y D 
Sbjct: 76  VIY------RHLDTPVLFINPRLTFPEQEMIDVLDDCMSFPDLLVRVKRYKRCIIYYKDL 129

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145
                 +   G ++  +QHE DHL+GIL
Sbjct: 130 EWNDCSMELKGDMSELIQHEYDHLDGIL 157


>gi|197301435|ref|ZP_03166515.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC
           29176]
 gi|197299473|gb|EDY33993.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC
           29176]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59
           + + ++     I  R ++P  + + +I   + ++L+ + +   I   +AA  IG+   ++
Sbjct: 1   MVRNIIK-GKKIFGRKAKPATEADQEI---VTDLLDTLRANREICVGMAANMIGINKSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + +            +   +IT        +EGCLS+   R    R   I V Y+D N 
Sbjct: 57  AVAVGPFQFA------MINPVITKMSGEYKTEEGCLSLEGTR-LCTRYEEIEVDYLDSNF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q       G  A  +QHE+DH  GI+ 
Sbjct: 110 QFCHGKYSGWTAQIIQHEIDHCKGIVI 136


>gi|81429108|ref|YP_396108.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610750|emb|CAI55801.1| Formylmethionine deformylase (formyl-L-methionyl
           peptideamidohydrolase) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLV 59
           + KP++      L +V+ P    ++ +   I ++++ +   +   +G+AA  IGV  R++
Sbjct: 1   MIKPIMHD-TEFLSQVALPATTADTAV---ITDLIDTLQANTDRCVGMAANMIGVNKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +        P++ +NPKII  S+ +   +     +       KR   I V Y D   
Sbjct: 57  IVQM-----GILPVIMVNPKIIRHSNPYQTEEGCLSLVGQRS--TKRYETIEVSYQDRQF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q     G +A  +QHE+DH  GIL 
Sbjct: 110 KAQQQAFSGWVAQIIQHEIDHCEGILI 136


>gi|1361510|pir||G64211 formylmethionine deformylase homolog - Mycoplasma genitalium
          Length = 226

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 16  RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63
           + +  +   I+  I   I  M+  + ++            GIG+AA QIG   +L  I L
Sbjct: 53  KPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHL 112

Query: 64  QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQ 120
            D    K  ++     I    +       +        ++  V RS +IT++  D    +
Sbjct: 113 NDLNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKK 172

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I A GL   CLQHE DHL G  F   ++ L
Sbjct: 173 EITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 205


>gi|227543949|ref|ZP_03973998.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|300909699|ref|ZP_07127160.1| peptide deformylase [Lactobacillus reuteri SD2112]
 gi|227186065|gb|EEI66136.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|300893564|gb|EFK86923.1| peptide deformylase [Lactobacillus reuteri SD2112]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + KP++   D  L   ++         + L +++++    +  + +G+AA  IGV    +
Sbjct: 1   MIKPIIK--DQQLL--AKKATLTTKADLPLANDLIDTLNAHQAECVGMAANMIGVNKNAI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  +             NP+I+  S  +   +             KR   ITV++ + + 
Sbjct: 57  IARIGPFNVL-----MFNPQIVAKSHPYQTTEGCLSLSGTRP--TKRYKQITVKFRNQSW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q Q +      A  +QHE+DH NGI+ 
Sbjct: 110 QVQTLELTDFAAEIIQHEIDHCNGIII 136


>gi|290476476|ref|YP_003469381.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175814|emb|CBJ82617.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 96

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
          M    ++  PD  LR+    +  ++ +I  LID+ML+ MY   +GIGLAA Q+G    ++
Sbjct: 1  MAILNILTIPDERLRQKCIDVTHVD-EIQTLIDDMLDTMYDTDNGIGLAAPQVGRKEAVL 59

Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95
          +ID+  +  R  PMV +NPKI+         +    
Sbjct: 60 IIDISPN--RDQPMVLVNPKIVEKERRVVNQEGCLS 93


>gi|307069643|ref|YP_003878120.1| peptide deformylase [Candidatus Zinderia insecticola CARI]
 gi|306482903|gb|ADM89774.1| peptide deformylase [Candidatus Zinderia insecticola CARI]
          Length = 144

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 85/142 (59%), Gaps = 2/142 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+  L ++S+ I KIN+ I NLI  M E+MY+  GIGL+A+   +  +  +  +  
Sbjct: 4   IINYPNKNLFKISKKIYKINNKIKNLIFYMSEIMYNLLGIGLSAI--QINKKKKIFIIDI 61

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             ++    +FIN KI+  S     ++EGCLS P    ++KRS +I + +++   + +I  
Sbjct: 62  SKNKNKLKIFINSKILYLSKKKIYFKEGCLSFPGIYKNIKRSIYIKIIFINIKGKFKIYK 121

Query: 126 ADGLLATCLQHELDHLNGILFI 147
           +  + + C+QHE++H+NG +F+
Sbjct: 122 SKNIFSICIQHEIEHINGKIFL 143


>gi|307691872|ref|ZP_07634109.1| formylmethionine deformylase [Ruminococcaceae bacterium D16]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + +    D   L + + P    +  I     ++LE    +    +G+AA  IGV  R+
Sbjct: 1   MIRDICK--DETFLAQKAEPATPDDLPI---AADLLETLEHHKAGCVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +  D +        MV  NP+II  S  +   +          A  KR   I VR+ +  
Sbjct: 56  IAFDNEGTY-----MVMFNPEIIKQSGPYEAEEGCLSLTGTRPA--KRWKSIKVRWQNEK 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q ++    G  A  +QHE+DH  GI+ 
Sbjct: 109 FQERLKTFTGWTAQIIQHEIDHCEGIII 136


>gi|266624674|ref|ZP_06117609.1| peptide deformylase [Clostridium hathewayi DSM 13479]
 gi|288863453|gb|EFC95751.1| peptide deformylase [Clostridium hathewayi DSM 13479]
          Length = 121

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G+GLAA Q+GVL ++VVID++D          +   +IT +       EGCLS+P     
Sbjct: 1   GVGLAAPQVGVLKQIVVIDVEDGNQ-----YVLINPVITETSGSQTGSEGCLSVPGKSGV 55

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   + V+  DC      +  +GLLA  + HE DHL+G LF+D + 
Sbjct: 56  VTRPDHVKVKAFDCEMNEFELIGEGLLARAICHECDHLSGDLFVDKVE 103


>gi|157825208|ref|YP_001492928.1| polypeptide deformylase [Rickettsia akari str. Hartford]
 gi|157799166|gb|ABV74420.1| Polypeptide deformylase [Rickettsia akari str. Hartford]
          Length = 100

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 42/98 (42%)

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               ++INP       D     EG  S+ +    V R   I     D N        +G 
Sbjct: 1   MPKTIWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCHAYDINGHQIQGITEGF 60

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LA  +QHE+DHLNG +F+D+++  K     K + K  +
Sbjct: 61  LARVIQHEIDHLNGKVFLDYVAPEKIMTKEKYLEKRKK 98


>gi|323704619|ref|ZP_08116197.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum
          LX-11]
 gi|323536081|gb|EGB25854.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum
          LX-11]
          Length = 117

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M  + +    DPIL + ++ +EKI+  I+ ++++M E MY+ DG+GLAA QIG+L RLVV
Sbjct: 1  MALRYIREIGDPILYKKAKQVEKIDEHILMILEDMAETMYNADGVGLAANQIGILRRLVV 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana]
          Length = 200

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P P+LR  +  +   +  +  L   M  +MY++ G+GLAA Q+G+  RL+V + + 
Sbjct: 86  ILEYPHPLLRAPNSEVVSFDDSLRKLTREMFAIMYASRGVGLAAPQLGINKRLMVFNPEG 145

Query: 66  HAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +  + +V  NP+I+         +EGCLS P + ADV R+ +I V +     
Sbjct: 146 KKEKWMSEVVLCNPRIVERGAGKETDEEGCLSFPGFTADVDRAGWIQVEFQTGRG 200


>gi|299116828|emb|CBN74940.1| dubious peptide deformylase [Ectocarpus siliculosus]
          Length = 97

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            V+R  ++ V  ++   +          A   QHE DHL+G ++IDHLS  +R+ +   +
Sbjct: 25  QVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHLDGTVYIDHLSPPEREKVQPVL 84

Query: 163 SKLV 166
            KLV
Sbjct: 85  DKLV 88


>gi|313885254|ref|ZP_07819006.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619945|gb|EFR31382.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 136

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K +V   +  L + ++P  K +  ++  + + L+       +G+AA  IG+   ++++
Sbjct: 1   MIKEIVTD-NFFLSQKAKPATKEDQAVIQDLKDTLKAHRHH-CVGMAANMIGINKAIIIV 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +            +NP+I + +  +   +             +R   I V+Y+D +   
Sbjct: 59  AMGPLDLV-----MVNPEITSQAKPYQTQEGCLSHTGQKP--TQRYQEIQVQYLDEHFHP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           +     G LA  +QHE+DHL GIL 
Sbjct: 112 KNRRFQGPLAQVIQHEMDHLAGILI 136


>gi|2507258|sp|P47352|DEF_MYCGE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 216

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 16  RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63
           + +  +   I+  I   I  M+  + ++            GIG+AA QIG   +L  I L
Sbjct: 43  KPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHL 102

Query: 64  QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQ 120
            D    K  ++     I    +       +        ++  V RS +IT++  D    +
Sbjct: 103 NDLNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKK 162

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I A GL   CLQHE DHL G  F   ++ L
Sbjct: 163 EITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 195


>gi|167950137|ref|ZP_02537211.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 80

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQ 51
          M    ++  PDP L++ S  +E+ +  +   ID++ E   +    +G+AA Q
Sbjct: 1  MAILEILKLPDPRLKQPSELVEQFDDALRAFIDDLEETRVNGPAAVGIAAPQ 52


>gi|312868505|ref|ZP_07728705.1| peptide deformylase [Streptococcus parasanguinis F0405]
 gi|311096250|gb|EFQ54494.1| peptide deformylase [Streptococcus parasanguinis F0405]
          Length = 185

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           +KK +V     +L   + S        +   L  ++ + + +   + +GLAA  IGV  R
Sbjct: 50  MKKNIVK---DVLFLGQKSEEAT---PEDRTLALDLQDTLNAHLLECVGLAANMIGVKKR 103

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            ++I +             NP ++     +   +     +        R   I+V Y D 
Sbjct: 104 AIIIRMGSENLV-----LFNPVLLEKKKPYQTEEGCLSLVGSRP--TTRYEEISVAYRDV 156

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + + I+  G  A   QHE+DHL GI+ 
Sbjct: 157 NWKAKTIHLSGFPAQICQHEMDHLEGIII 185


>gi|227509076|ref|ZP_03939125.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191463|gb|EEI71530.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 136

 Score = 62.1 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+    +P  L + ++P    +S    +I ++L+ + +     +G+AA  IGV  R+
Sbjct: 1   MIKPINH--NPLTLSQRAQPATSADS---QIITDLLDTLRANTQICVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +        P+  +NP+I+  S  F+  +       + +    R   ITV Y+D N
Sbjct: 56  IVVQM-----GMLPVALVNPEIVEKSVPFATKEGCLS--LEGQRSTTRYKEITVTYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH  GIL 
Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136


>gi|152990073|ref|YP_001355795.1| hypothetical protein NIS_0324 [Nitratiruptor sp. SB155-2]
 gi|151421934|dbj|BAF69438.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 266

 Score = 62.1 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++ +PD  L ++S  I    +  I  +++ + + +   +   LAA+QIG   R++
Sbjct: 1   MA--KILTYPDHTLLQISGLIRDFKDPKINEIVEEIKKTIEENNLQALAAIQIGEPLRII 58

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+  +D  +       I  K   +       +    S+P+    V+R   I V Y D   
Sbjct: 59  VLKKKDGTYEVMINPTIYGKEGQYFASTESDE----SLPNIEVTVQRYPVIKVMYEDLQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +   A    A  LQ ++D + G    D LS
Sbjct: 115 NQKFYTAKDDEAVLLQRKIDMVFGGYLFDKLS 146


>gi|37626213|gb|AAQ96588.1| hypothetical protein [Vibrio phage VP16C]
          Length = 137

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L  ++  +     D+  L+D M   M +  GIGLA  Q+GVL R++V+        K   
Sbjct: 11  LHAIAADVPH-GEDVTGLVDAMTAAMTAAGGIGLAGNQLGVLKRVIVVR-----APKFKG 64

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
             +NP I   +      +EGCLS P    D KR   ITV   D + Q   + A GL A C
Sbjct: 65  CIVNPVITRHTSGHVNSREGCLSFPGKTVDKKRHNKITVEGFDAHWQPIKVEAKGLTAFC 124

Query: 134 LQHELDHLNGILF 146
           +QHE+DHLNG+  
Sbjct: 125 IQHEIDHLNGVTI 137


>gi|289677569|ref|ZP_06498459.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 47

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL 47
          M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGL
Sbjct: 1  MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGL 47


>gi|239940680|ref|ZP_04692617.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
 gi|239987159|ref|ZP_04707823.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 11379]
 gi|291444118|ref|ZP_06583508.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291347065|gb|EFE73969.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 189

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 6   LVIFPDPILRRVSR---------PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           +V     IL   +R           E++  ++   +D + +V     G+GLAA QIG+  
Sbjct: 15  VVQQGAAILTERARAFDLPAERDEAERVVDELFAAMDRIGQVHPFAKGMGLAAPQIGISR 74

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              V+     A     +V +NP+I    ++   + EGCLS  D R  V R   ITV    
Sbjct: 75  AAAVVQPPGDAPS---IVLLNPRITVCCNESDEHYEGCLSFFDVRGPVPRPLTITVETTT 131

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + +      +  LA  + HE+DHL G+L+   ++
Sbjct: 132 QSGETVTTAYERGLARLIHHEIDHLGGLLYTARMN 166


>gi|149378482|ref|ZP_01896166.1| peptide deformylase [Marinobacter algicola DG893]
 gi|149357233|gb|EDM45771.1| peptide deformylase [Marinobacter algicola DG893]
          Length = 43

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44
          +   ++ +PDP LR +++P++++  +   LID+M E MY   G
Sbjct: 1  MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPG 43


>gi|108885085|ref|NP_072768.2| peptide deformylase [Mycoplasma genitalium G37]
 gi|255660128|ref|ZP_05405537.1| peptide deformylase [Mycoplasma genitalium G37]
 gi|84626150|gb|AAC71324.2| peptide deformylase [Mycoplasma genitalium G37]
 gi|166078861|gb|ABY79479.1| peptide deformylase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 193

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 16  RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63
           + +  +   I+  I   I  M+  + ++            GIG+AA QIG   +L  I L
Sbjct: 20  KPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHL 79

Query: 64  QDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQ 120
            D    K  ++     I    +       +        ++  V RS +IT++  D    +
Sbjct: 80  NDLNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKK 139

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I A GL   CLQHE DHL G  F   ++ L
Sbjct: 140 EITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 172


>gi|153206215|ref|ZP_01945478.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177']
 gi|165919286|ref|ZP_02219372.1| peptide deformylase [Coxiella burnetii RSA 334]
 gi|120577345|gb|EAX33969.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917009|gb|EDR35613.1| peptide deformylase [Coxiella burnetii RSA 334]
          Length = 209

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVIDLQ-----D 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R+++++        
Sbjct: 13  VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 73  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +  Y     +   QHE+DHL G +++D   
Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164


>gi|167947582|ref|ZP_02534656.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +      +G  A  LQHE+DHL+GILF+D L   + D+  +K+
Sbjct: 1   DPYGEPLEFDMEGYEARALQHEVDHLDGILFVDRLVSRRTDLFQRKV 47


>gi|260663513|ref|ZP_05864403.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552054|gb|EEX25107.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
          Length = 136

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +  P+      +L++ +RP    +     L + ++     +    IG+AA  IG    ++
Sbjct: 1   MIYPI-NHDQQVLQQPARPATNAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L            +NP+++  +  +   +              R   ITV Y D   
Sbjct: 57  AVSLGPVNVA-----MLNPRLVKKAHPYQTKEGCLSLTGTRS--TTRFERITVAYQDLTG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q +   GL A  +QHE DHL GIL 
Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136


>gi|161830302|ref|YP_001597698.1| peptide deformylase [Coxiella burnetii RSA 331]
 gi|161762169|gb|ABX77811.1| peptide deformylase [Coxiella burnetii RSA 331]
          Length = 209

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNM-LEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           +L +V+  +E  +       I+ M +         G AA Q+G+  R+++++        
Sbjct: 13  VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 73  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +  Y     +   QHE+DHL G +++D   
Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164


>gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri]
 gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri]
          Length = 175

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 59/100 (59%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P P LR  + PIE  ++++  L   M ++MY T G GLAA Q+GV YR++V +   
Sbjct: 71  IAKYPAPCLRAKNAPIETFDANLEQLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 130

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
              +   +V  NPKI+ +S +   ++EGCLS P   ADV+
Sbjct: 131 EPGKGREVVLCNPKIVKYSKEKDFFEEGCLSFPKMYADVE 170


>gi|145491449|ref|XP_001431724.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398829|emb|CAK64326.1| unnamed protein product [Paramecium tetraurelia]
          Length = 180

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD------GIGLAAVQIGVLYRL 58
            ++     ILR+         +   + +  M++ +   +       + LAA Q+G   RL
Sbjct: 13  KVLPISHEILRKKIFEHYNFTNKEEDTLSTMIDTLRLYNKLHSIEALALAAPQVGWEKRL 72

Query: 59  VVIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            V    +          +K  +      I   +D     +      P+  A V RS  IT
Sbjct: 73  FVCADLELQQRKKAKYIQKVDVYLNPEIIKKSNDLIVSKENCLSIPPNQIACVMRSNKIT 132

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           ++Y +      ++ A+GL A   QHE+DHL+GI  ++  + +
Sbjct: 133 MKYYNLLGIEMVVEAEGLQACIYQHEIDHLDGINALEKATSI 174


>gi|227515637|ref|ZP_03945686.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
 gi|227086067|gb|EEI21379.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
          Length = 136

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +  P+      +L++ +RP    +     L + ++     +    IG+AA  IG    ++
Sbjct: 1   MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L            +NP+++  +  +   +              R   ITV Y D   
Sbjct: 57  AVSLGPVNVA-----MLNPRLVKKAHPYQTKEGCLSLTGTRS--TTRFERITVAYQDLTG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q +   GL A  +QHE DHL GIL 
Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136


>gi|209363680|ref|YP_001423542.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|212217854|ref|YP_002304641.1| peptide deformylase [Coxiella burnetii CbuK_Q154]
 gi|207081613|gb|ABS76532.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|212012116|gb|ACJ19496.1| peptide deformylase [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVIDLQ-----D 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R+++++        
Sbjct: 17  VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 77  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 136

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +  Y     +   QHE+DHL G +++D   
Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168


>gi|261338163|ref|ZP_05966047.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270276799|gb|EFA22653.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 152

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + +RP +  N + + +  ++ + + +     +G+AA  IG    + +I   D      
Sbjct: 22  LAKPARPADPSNPEDLQIAQDLKDTLRAHSDGCVGMAANMIGEP--VAIIVFVDDEMGGG 79

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
               +NP+I T    +   +       D    V R+ +I V Y +   + +    +G  A
Sbjct: 80  ITTMLNPRITTAQQYYETAEGCLS--LDGERAVTRAQYIEVDYDNTKGKPRHARFEGFTA 137

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  G + 
Sbjct: 138 QIIQHEVDHCLGKII 152


>gi|28379384|ref|NP_786276.1| peptide deformylase [Lactobacillus plantarum WCFS1]
 gi|254557520|ref|YP_003063937.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|308181597|ref|YP_003925725.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272223|emb|CAD65131.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1]
 gi|254046447|gb|ACT63240.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|308047088|gb|ADN99631.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 136

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + +P+V  P  +    S P +        ++ ++L+    ++ + +G+AA  IGV  +++
Sbjct: 1   MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+ L   A        INPKII     +   +              R   ITV+Y D + 
Sbjct: 57  VVQLGPFAIA-----MINPKIIDHHGTYETKEGCLS--LPGERPTSRYHQITVKYKDQHF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q    +   A  +QHELDH  G L 
Sbjct: 110 KPQQQRFNDFTAQIIQHELDHCAGKLI 136


>gi|302672051|ref|YP_003832011.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316]
 gi|302396524|gb|ADL35429.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316]
          Length = 136

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + K +V   DP  L++ S P  + +     +I ++L+ + +       +AA  IGV  R+
Sbjct: 1   MVKQIVK--DPFFLQQKSEPATEAD---KQVIQDLLDTLRANQDRCVGMAANMIGVKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +        P  F                E      +      R   I V Y+D +
Sbjct: 56  IVVAMG-------PFHFAMVNPEITKKSGEYQTEESCLSLEGVRPCTRYKEIEVDYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q        A  +QHE+DH  GIL 
Sbjct: 109 FKPQHGKYKDFTAQIIQHEIDHFEGILI 136


>gi|148972164|ref|ZP_01811404.1| peptide deformylase [Leptolyngbya valderiana BDU 20041]
 gi|148872760|gb|EDL71126.1| peptide deformylase [Leptolyngbya valderiana BDU 20041]
          Length = 118

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 48/89 (53%)

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             HA    P   +NP+I+  SDD  +  EGCLS+P  R  V R   I V Y+D + + Q 
Sbjct: 10  YPHAPMLEPTAMVNPRILHCSDDRVLGWEGCLSVPGRRGWVPRYREIEVEYLDRSGRLQR 69

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152
                 +A   QHE DHLNG++F+D + +
Sbjct: 70  RVLKDFVARIFQHEFDHLNGLVFLDRVEK 98


>gi|157873892|ref|XP_001685446.1| polypeptide deformylase-like protein [Leishmania major strain
           Friedlin]
 gi|68128518|emb|CAJ08650.1| putative polypeptide deformylase-like protein [Leishmania major
           strain Friedlin]
          Length = 271

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 12/155 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI------NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
             + +  +P    R ++RP+  +      +   M+ + ++ ++      +  +A +    
Sbjct: 49  ALRRVACYPH---RSMTRPVMPVPTSQILSPVFMSSLMDLNQLATGLHCLSFSAPKAHWD 105

Query: 56  YRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +++I            V                    E C+S     A V R   IT 
Sbjct: 106 AAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRITC 165

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              D +  H++   DG+ A CL HELDHL G    
Sbjct: 166 SGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|212211904|ref|YP_002302840.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
 gi|212010314|gb|ACJ17695.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
          Length = 213

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVIDLQ-----D 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R+++++        
Sbjct: 17  VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 77  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHMELTAWLYHSDTEALS 136

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +  Y     +   QHE+DHL G +++D   
Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168


>gi|182419964|ref|ZP_02951200.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237665638|ref|ZP_04525626.1| polypeptide deformylase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376215|gb|EDT73800.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237658585|gb|EEP56137.1| polypeptide deformylase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 137

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59
           + + +V   D  L + +    K +   + +ID+M++   +   I   LA+ QIG   R++
Sbjct: 1   MVREIVKDNDK-LTQKAVEATKKD---LYIIDDMIDTAKANRDICVGLASNQIGENVRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V  + D          +NPKIIT S      +E CLS    +    R + I V Y D N 
Sbjct: 57  VALMGDEFIP-----LVNPKIITHSVATYEDEEACLSHEGTK-KATRYSSIEVEYRDRNF 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G +A  +QHE+DH  GIL 
Sbjct: 111 KKRKNIFKGFVAQIIQHEMDHCEGILI 137


>gi|118096630|ref|XP_001232975.1| PREDICTED: similar to Component of oligomeric golgi complex 8
           [Gallus gallus]
          Length = 677

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            SI  + A V R     V  +D N       A G  A  +QHE+DHL+G+LFID +  
Sbjct: 607 ASIRGFAAGVPRRGAGHVSGVDENGDPVSWEATGWAARIVQHEMDHLDGVLFIDRMDS 664


>gi|184155771|ref|YP_001844111.1| peptide deformylase [Lactobacillus fermentum IFO 3956]
 gi|183227115|dbj|BAG27631.1| polypeptide deformylase [Lactobacillus fermentum IFO 3956]
          Length = 136

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +  P+      +L++ +RP    +     L + ++     +    IG+AA  IG    ++
Sbjct: 1   MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L            +NP+++  +  +   +              R   ITV Y D   
Sbjct: 57  AVSLGPVNVA-----MLNPRLVKKAHPYQTKEGCLSLTGTRS--TTRFERITVAYQDLTG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             + +   GL A  +QHE DHL GIL 
Sbjct: 110 AQKELELTGLAAQAVQHECDHLRGILI 136


>gi|291542377|emb|CBL15487.1| N-formylmethionyl-tRNA deformylase [Ruminococcus bromii L2-63]
          Length = 136

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           + + +V   DP  L+R S    + +   +    ++L+ +       +G+AA  IGV  R+
Sbjct: 1   MVREIVH--DPMFLQRKSEDATQAD---LQTAQDLLDTLRANFDRCVGMAANMIGVAKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + I+              NP+II+   +F   +       D      R   I V+Y + N
Sbjct: 56  IAINDNGKYLV-----MFNPEIISKFGEFETEEGCLS--LDGERKTVRYKTIKVKYFNEN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +          A  +QHE+DH NGIL 
Sbjct: 109 FKQIKRSFSDFTAQIIQHEIDHCNGILI 136


>gi|319946366|ref|ZP_08020604.1| peptide deformylase [Streptococcus australis ATCC 700641]
 gi|319747519|gb|EFV99774.1| peptide deformylase [Streptococcus australis ATCC 700641]
          Length = 148

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYR 57
           M++K ++   DP  L ++S    K +   + L  ++ + + +       +AA  IGV  R
Sbjct: 12  MMEKAIMK--DPFFLSQISEEATKED---LYLAQDLQDTLRAHQDSCVGMAANMIGVRKR 66

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++I          P+V  NP ++     +   +         +    R   I V Y D 
Sbjct: 67  VIIIQF-----GLMPLVLFNPVLVKKEGVYETEEGCLSLAGSRK--TSRFEKIQVSYRDM 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q+I  +G  A   QHELDHL GIL 
Sbjct: 120 NWKPQLISLEGFAAQICQHELDHLEGILI 148


>gi|261367618|ref|ZP_05980501.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
 gi|282570406|gb|EFB75941.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
          Length = 136

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + +    D I L + + P    +  +     ++LE    +    +G+AA  IGV  R+
Sbjct: 1   MIREICK--DVIFLAQKAEPATPEDLPV---AADLLETLEYHKDGCVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +  D +            NP+I+  S  +   +            VKR   I V++ +  
Sbjct: 56  IAFDNEGKYQV-----MFNPEILRRSGPYEAEEGCLSLTGVRP--VKRWKTIKVQWQNEK 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q +I    G  A  +QHE+DH  GI+ 
Sbjct: 109 FQQRIKNFTGWTAEIIQHEIDHCEGIII 136


>gi|225376046|ref|ZP_03753267.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM
           16841]
 gi|225212066|gb|EEG94420.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM
           16841]
          Length = 136

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K +    DP  L + S    + +     +I ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MIKKITR--DPMFLAQKSVDATEAD---KQVISDLLDTLRANLDHCVGMAANMIGVSKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+              +   +IT        +EGCLS+   R    R   I V Y+D N
Sbjct: 56  IVVAAGPFQFA------MINPVITKKMGTFQTEEGCLSMDGVR-PCTRYKEIEVDYLDTN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NGI+ 
Sbjct: 109 FKKQHGKYTGWTAQIIQHEIDHCNGIVI 136


>gi|154500866|ref|ZP_02038904.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC
           29799]
 gi|150270366|gb|EDM97692.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC
           29799]
          Length = 136

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + + +    +  L + + P    +   + +  ++LE    +    +G+AA  IGV  R++
Sbjct: 1   MIRDICKD-ETFLAQKAEPATPDD---IQIAADLLETLEHHKDGCVGMAANMIGVNKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D +        MV  NP+I+  S  +   +             KR   I VR+ + + 
Sbjct: 57  AFDNEGTY-----MVMFNPEIVKKSGPYDAEEGCLS--LTGIRPAKRWQSIKVRWQNEHF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q ++    G  A  +QHELDH  GI+ 
Sbjct: 110 QERLKAFTGWTAQIIQHELDHCEGIII 136


>gi|116335077|ref|YP_802572.1| peptide deformylase [Candidatus Carsonella ruddii PV]
 gi|116235358|dbj|BAF35206.1| peptide deformylase [Candidatus Carsonella ruddii PV]
          Length = 154

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 82/146 (56%), Gaps = 3/146 (2%)

Query: 5   PLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++ F D  +R   + ++   N +I+ +I  M+ +MY  +GIG+++ QI     +  I  
Sbjct: 3   KILNFKDKRIRLFFKNVKVSFNYNILYIIKQMIILMYKNNGIGISSNQINCFKNI--IIC 60

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             +  +K P++ INPKI+  + + ++  EGCLSI ++   V R   + ++Y +   + + 
Sbjct: 61  DVNFKKKKPLIMINPKILINNKNHTLGMEGCLSIKNFLISVLRFDKVYIKYFNIYNKKKK 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDH 149
              +G+ + C+QHE+DHLN  L +D+
Sbjct: 121 KIFNGIKSRCIQHEIDHLNSKLILDY 146


>gi|167757205|ref|ZP_02429332.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402]
 gi|237735710|ref|ZP_04566191.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703380|gb|EDS17959.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402]
 gi|229381455|gb|EEO31546.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 137

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + + +V   D   L + S P  K +  +   + ++L+ + +     +G+AA  IG+   +
Sbjct: 1   MIREIVS--DQFRLSQKSLPATKEDLPV---VQDLLDTIIAHATGCVGMAANMIGINKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++++   +         +NP+II         +EGCLS    +   KR   I V Y D +
Sbjct: 56  IIVNDDGNYLV-----MLNPEIIKTMGRLYETEEGCLSHIGVK-KTKRYEKIKVAYYDVD 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +I       A  +QHE+DH NGIL 
Sbjct: 110 FKKKIKTFSNYTAQIIQHEIDHCNGILI 137


>gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 121

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 44/80 (55%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            V INPK+   S   + + EGCLS+  YRA V+R   + V  +D N +   + A G  A 
Sbjct: 19  WVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQAR 78

Query: 133 CLQHELDHLNGILFIDHLSR 152
            LQHE DHL G L++D +  
Sbjct: 79  ILQHECDHLEGTLYVDKMVP 98


>gi|268320251|ref|YP_003293907.1| polypeptide deformylase [Lactobacillus johnsonii FI9785]
 gi|262398626|emb|CAX67640.1| polypeptide deformylase [Lactobacillus johnsonii FI9785]
          Length = 137

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP+V   D + L+  S P  K +      + + L +       GLAA  IGV  R++
Sbjct: 1   MAVKPIVH--DELSLKFKSLPATKQDLGAATDLKDTL-LANKDRAAGLAANMIGVQKRII 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + +        P+V +NP I+  +D +  Y+       +     +R   ITV+Y + N 
Sbjct: 58  ALFVGP-----LPIVMLNPIIVAQNDKYLAYEGCLSLTGERP--TERYKNITVKYQNENL 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NGIL 
Sbjct: 111 ETRQQSFSDFTAEVIQHEIDHCNGILI 137


>gi|42560770|ref|NP_975221.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492266|emb|CAE76863.1| Peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320698|gb|ADK69341.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 200

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     +     
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNYHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|213027380|ref|ZP_03341827.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 44

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +LA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 1   MLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 40


>gi|207108487|ref|ZP_03242649.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 77

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 45/77 (58%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1  MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61 IDLQDHAHRKNPMVFIN 77
          I+L      ++    + 
Sbjct: 61 INLPQEDGVQHKEDCLE 77


>gi|257064918|ref|YP_003144590.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
 gi|256792571|gb|ACV23241.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
          Length = 136

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P+V   + + LR  S P    +  +  +L+D +    +S + +G+AA  IGV  R++
Sbjct: 1   MIRPVVK--NELALRAPSSPATVADRSVGQDLMDTLR--FHSHECVGMAANMIGVAKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D              NP+I   S+ +   +          A   R   I V + D   
Sbjct: 57  VFDDAGTHRL-----MYNPEITAKSEPYQTEEGCLSLTGRRPA--TRYRRIEVTFRDERF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             +    +G  A  +QHE+DH NGI+ 
Sbjct: 110 ASRTEAFEGWTAQIIQHEIDHCNGIVI 136


>gi|83319871|ref|YP_424193.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283757|gb|ABC01689.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 200

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     +     
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  GIL+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGILYYDHINK 186


>gi|227891784|ref|ZP_04009589.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|227866443|gb|EEJ73864.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
          Length = 136

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +      IL + S P  K +  I  +L+D +    +    +G+AA  IG    ++ 
Sbjct: 1   MIRDI-NHDVKILSKKSTPTSKNDIAIVQDLVDTL--TYHRDHCVGMAANMIGKNKCIIA 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                       +  INP I   S  +S  +       +      R   I V Y++ + Q
Sbjct: 58  CQFGP-----LIVAMINPVITKKSQKYSTSEGCLSLTGERE--TTRFNKIEVSYLNQSFQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
                 +G  A  +QHE+DH NGIL 
Sbjct: 111 KVHATFEGFNAQIIQHEIDHCNGILI 136


>gi|169838490|ref|ZP_02871678.1| hypothetical protein cdivTM_15541 [candidate division TM7
           single-cell isolate TM7a]
          Length = 118

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 41  RTDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 84


>gi|29655164|ref|NP_820856.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|39931092|sp|Q83AK6|DEF2_COXBU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29542436|gb|AAO91370.1| peptide deformylase [Coxiella burnetii RSA 493]
          Length = 209

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLVVIDLQ-----D 65
           +L +V+  +E  +       I+ M     S  G    A  Q+G+  R+++++        
Sbjct: 13  VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAVPQVGLSERIILVEQHLFDTTM 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 73  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +  Y     +   QHE+DHL G +++D   
Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164


>gi|260221951|emb|CBA31028.1| hypothetical protein Csp_C26500 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 48

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 1   MEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKAKRE 45


>gi|326927579|ref|XP_003209969.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like,
           partial [Meleagris gallopavo]
          Length = 600

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           N       A G  A  +QHE+DHL+G+LFID +  
Sbjct: 553 NGDPVSWEATGWAARIVQHEMDHLDGVLFIDRMDS 587


>gi|227524969|ref|ZP_03955018.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
 gi|227087881|gb|EEI23193.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
          Length = 136

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+    +P  L + ++P    ++    +I ++L+ +++     +G+AA  IGV  R+
Sbjct: 1   MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +     R  P+  +NP+I+  S  F+  +       + +    R   ITV Y+D N
Sbjct: 56  IVVQM-----RMLPVALVNPEIVEKSVPFATKEGCLS--LEGQRSTTRYKEITVTYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH  GIL 
Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136


>gi|331703218|ref|YP_004399905.1| peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801773|emb|CBW53926.1| Peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 200

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     +     
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|154484915|ref|ZP_02027363.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC
           27560]
 gi|149733868|gb|EDM49987.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC
           27560]
          Length = 136

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59
           + K +V     I  R ++P  K +     ++ ++++ +     I   +AA  IGV   ++
Sbjct: 1   MVKKIVK-GKQIFARKAQPATKAD---KQVVTDLMDTLRENREICVGMAANMIGVNKSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+                  +IT        +EGCLS+   R +  R   I V Y++ N 
Sbjct: 57  VVAAGPFQFAMV------NPVITKKSGEYTTEEGCLSLDGVR-NCIRYKEIEVDYLNENF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH NG++ 
Sbjct: 110 EPKHGKFSGYTAQIIQHEVDHCNGVVI 136


>gi|322494221|emb|CBZ29518.1| putative polypeptide deformylase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 271

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 12/155 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI------NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
             + +  +P    R ++RP+  +      +   M+ + ++ ++      +  +A +    
Sbjct: 49  ALRRVACYPH---RSMTRPVMPVPMSQILSPVFMSSLMDLNQLATDLHCLSFSAPKAHWD 105

Query: 56  YRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +++I            V                    E C+S     A V R   IT 
Sbjct: 106 AAVILIKGNPDEKEYEVWVNPLVPGYDDRDAVAPMYGMWENCISCGTATAWVVRPQRITC 165

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              D +  H++   DG+ A CL HELDHL G    
Sbjct: 166 SGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|290977842|ref|XP_002671646.1| predicted protein [Naegleria gruberi]
 gi|284085216|gb|EFC38902.1| predicted protein [Naegleria gruberi]
          Length = 297

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 40/84 (47%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
           +I+PKI+  S +     EGCLS  +    + RS  I V Y++     Q    DG  A   
Sbjct: 193 YIDPKIVDKSVEMEREVEGCLSFKNEYLFLMRSKEIEVEYINMFGVKQRKTLDGFSARVF 252

Query: 135 QHELDHLNGILFIDHLSRLKRDMI 158
           QHE DHL GI   D +   K+D  
Sbjct: 253 QHEFDHLEGINMFDRVVDKKKDRY 276


>gi|256384123|gb|ACU78693.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384955|gb|ACU79524.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455689|gb|ADH21924.1| peptide deformylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 200

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     +     
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|330952314|gb|EGH52574.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 45

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44
          M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   G
Sbjct: 1  MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPG 44


>gi|94502278|ref|ZP_01308760.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451171|gb|EAT14114.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 117

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
           FINP II       + +EGCLSIP+   ++KR   I + Y D N +    + +GLL+  +
Sbjct: 2   FINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQHFNGLLSIII 61

Query: 135 QHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168
           QHE DH+ G LFID++  LK  +I K         K+ KL +L
Sbjct: 62  QHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 104


>gi|291457332|ref|ZP_06596722.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291381167|gb|EFE88685.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 139

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +++P++      LR  S P E  +   M  + + LE    +  +G+AA  IGV  R+  I
Sbjct: 1   MQRPIMTS-RSFLRTPSEPAEPSDEAAMQDLVDTLEANR-SRCVGMAANMIGVGKRI--I 56

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              D        V +NP I      F   +       + R    R   I V Y D   + 
Sbjct: 57  AFVDEDLGGRVTVMLNPVITASDGAFDTQEGCLSLAGERR--TLRYRRIEVDYEDRRFRA 114

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           +     G  A  +QHE+DH NGI+ 
Sbjct: 115 RHATFTGWTAQIIQHEVDHCNGIII 139


>gi|300768769|ref|ZP_07078665.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300493726|gb|EFK28898.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 141

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + +P+V  P  +    S P +        ++ ++L+    ++ + +G+AA  IGV  +++
Sbjct: 6   MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 61

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+ L   A        INPKII     +   +              R   ITV+Y D + 
Sbjct: 62  VVQLGPFAIA-----MINPKIIDHHGTYETKEGCLS--LPGERPTSRYHQITVKYKDQHF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q    +   A  +QHELDH  G L 
Sbjct: 115 KPQQQRFNDFTAQIIQHELDHCAGKLI 141


>gi|322501785|emb|CBZ36867.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 271

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + +  +P   + R   P+     ++   M+ + ++ ++      +  +A +      +
Sbjct: 49  ALRRVACYPHRSMTRPVMPVPASQILSPVFMSSLMDLNQLATDLHCLSFSAPKAHWDAAV 108

Query: 59  VVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++I            V                    E C+S     A V R   +T    
Sbjct: 109 ILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGY 168

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           D +  H++   DG+ A CL HELDHL G    
Sbjct: 169 DEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|227511983|ref|ZP_03942032.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
 gi|227084791|gb|EEI20103.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+    +P  L + ++P    ++    +I ++L+ +++     +G+AA  IGV  R+
Sbjct: 1   MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +        P+  +NP+I+  S  F+  +       + +    R   ITV Y+D N
Sbjct: 56  IVVQM-----GMLPVALVNPEIVEKSVPFATKEGCLS--LEGQRSTTRYKEITVTYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH  GIL 
Sbjct: 109 LRSHRQGFSDWIAQIIQHEVDHCEGILI 136


>gi|146096471|ref|XP_001467816.1| polypeptide deformylase-like protein [Leishmania infantum JPCM5]
 gi|134072182|emb|CAM70883.1| putative polypeptide deformylase-like protein [Leishmania infantum
           JPCM5]
          Length = 271

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + +  +P   + R   P+     ++   M+ + ++ ++      +  +A +      +
Sbjct: 49  ALRRVACYPHRSMTRPVMPVPASQILSPVFMSSLMDLNQLATDLHCLSFSAPKAHWDAAV 108

Query: 59  VVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++I            V                    E C+S     A V R   +T    
Sbjct: 109 ILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGY 168

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           D +  H++   DG+ A CL HELDHL G    
Sbjct: 169 DEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|301301079|ref|ZP_07207239.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851349|gb|EFK79073.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + + +      IL + S P  K +   + ++ ++++    +    +G+AA  IG    ++
Sbjct: 1   MIRDI-NHDVKILSKKSTPASKND---IAIVQDLVDTLNYHRDHCVGMAANMIGKNKCII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                        +  INP I   S  +S  +       +      R   I V Y++ + 
Sbjct: 57  ACQFGP-----LIVAMINPVITKKSQKYSTSEGCLSLTGERE--TTRFNKIKVSYLNQSF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q      +G  A  +QHE+DH NGIL 
Sbjct: 110 QKVHATFEGFNAQIIQHEIDHCNGILI 136


>gi|166030770|ref|ZP_02233599.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC
           27755]
 gi|166029352|gb|EDR48109.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC
           27755]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           + + +V     +L   + S P  + +     +  ++L+    +    +G+AA  IGV  R
Sbjct: 1   MVREVV---HDVLFLGQKSEPATQAD---KQVAIDLLDTLKAHEEGCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ +++         +   NP+I+  S  +   +     I        R   I + Y D 
Sbjct: 55  IIAVNM-----GFMNVAMFNPRIVKKSGSYQTEEGCLSLIGVRP--CTRYQEIELEYQDM 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q     G +A  +QHE+DH NGI+ 
Sbjct: 108 NWKKQRQKYTGWIAQIIQHEVDHCNGIII 136


>gi|313665134|ref|YP_004047005.1| peptide deformylase [Mycoplasma leachii PG50]
 gi|312949522|gb|ADR24118.1| peptide deformylase [Mycoplasma leachii PG50]
          Length = 200

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     +     
Sbjct: 70  YLRPAVGLAAPQIGVNKDIFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|313900498|ref|ZP_07833991.1| peptide deformylase [Clostridium sp. HGF2]
 gi|312954560|gb|EFR36235.1| peptide deformylase [Clostridium sp. HGF2]
          Length = 137

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           + K +V   D  L   SR  E    D +  + ++ +    ++   +G+AA  IGVL R++
Sbjct: 1   MIKEIVK--DTFLL--SRRCEAATLDDLQTVQDLQDTLQAHADHCVGMAANMIGVLKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V               +NP II   D     +EGCL     +    R   I V YMDC  
Sbjct: 57  VFQDGGSYVS-----MLNPVIIKTGDKRYTAEEGCLCHSTQK-KALRYEKIKVSYMDCCG 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I   +G  A  +QHELDH +GIL 
Sbjct: 111 KKKIKTYEGFCAQIIQHELDHCDGILI 137


>gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus]
          Length = 126

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 39/96 (40%)

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R                V +NP +         + EGC S+  + A V R   + +  +D
Sbjct: 18  RSCTTHELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLD 77

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +  A G  A  +QHE+DHL G LFID +  
Sbjct: 78  PRGEQVVWPASGWTARIIQHEMDHLQGCLFIDKMDS 113


>gi|50365386|ref|YP_053811.1| polypeptide deformylase [Mesoplasma florum L1]
 gi|50363942|gb|AAT75927.1| polypeptide deformylase [Mesoplasma florum L1]
          Length = 200

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 12  PILRRVSRPIEKI-----NSDI--MNLIDNMLEVM-----------YSTDGIGLAAVQIG 53
            ++R VS  +  +     + ++    LID ++              Y    +GLAA QIG
Sbjct: 25  EVIRSVSTKVADVNNLSKDEELTMKKLIDFVVASQDEEFNYEGKEDYLRPAVGLAAPQIG 84

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFI 110
           V   +  I      ++      IN + +  S         +       D    V RS  I
Sbjct: 85  VNKDMFYIRFNLPNNQIEEYAMINTEYLAKSSRMAALEEGEGCLSVDEDKHGIVPRSWII 144

Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +V+  D    +   +      +   QHE+DH  G L+ DH++
Sbjct: 145 SVKGFDWLKKEWVELKLKDYRSIVFQHEMDHNIGNLYYDHIN 186


>gi|289676938|ref|ZP_06497828.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 100

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 33/85 (38%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            INP I           EGCLS+P  R  V R   I     D   Q     A G  A  +
Sbjct: 3   LINPLITPLGSTLEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHARVV 62

Query: 135 QHELDHLNGILFIDHLSRLKRDMIT 159
           QHE DHL G L+   ++   +    
Sbjct: 63  QHECDHLIGRLYPSRITDFSKFGFM 87


>gi|257790516|ref|YP_003181122.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
 gi|257474413|gb|ACV54733.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
          Length = 136

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   +  +L+R S P  + +  I   + + LE    +  +G+AA  IG L R++V
Sbjct: 1   MIRPIMR--NELVLQRASAPATEADLPIAQDLLDTLEAHRHS-CVGMAANMIGELKRIIV 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP+II+ +  +   +          A   R   I V Y D   +
Sbjct: 58  FDDGGSHVA-----MLNPEIISCAGTYEAEEGCLSLSGTRSA--TRYRTIKVSYQDLAMK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            ++    G  A  +QHE+DH NG+L 
Sbjct: 111 PRVKTFTGFTAQIIQHEIDHCNGVLI 136


>gi|284048313|ref|YP_003398652.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731]
 gi|283952534|gb|ADB47337.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731]
          Length = 136

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + ++   D   L++ S P   ++  +     ++LE    +  + +G+AA  IGV   +
Sbjct: 1   MIREIMR--DEYFLQQKSLPASPLDKPV---AIDLLETLKAHRDECVGMAANMIGVAKCI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V++          MV  NP II     +   +       + +    R   I V + D +
Sbjct: 56  IVVN-----LGLMDMVMFNPTIIKQEGPYETSEGCLSLSGERK--TTRYRKIQVEFQDMD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q +   G  A  +QHE+DHL GIL 
Sbjct: 109 FKKQTLEFTGFPAQIIQHEVDHLAGILI 136


>gi|238925751|ref|YP_002939268.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238877427|gb|ACR77134.1| peptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 136

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K ++   DP  L + S    + +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVKKIMR--DPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+          P  F     +      +   E      D      R   I V Y+D N
Sbjct: 56  IVV-------AAGPFQFAMINPVITGKSGAFQTEEGCLSLDGVRPCTRYKEIEVDYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +     G  A  +QHE+DH NG++ 
Sbjct: 109 FKKKHGKYTGWTAQIIQHEVDHCNGVVI 136


>gi|13507984|ref|NP_109933.1| peptide deformylase [Mycoplasma pneumoniae M129]
 gi|2499923|sp|P75527|DEF_MYCPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1674288|gb|AAB96235.1| polypeptide deformylase [Mycoplasma pneumoniae M129]
          Length = 216

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 16  RVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++P++  ++   ++ I  M+           E      GIG+AA QIG   ++  I L
Sbjct: 43  EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 102

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119
            D    ++  + INPKII  S + S     +        ++  V R  +IT+   D    
Sbjct: 103 MDG-GVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 161

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   I A GL   CLQHE DHL G  +   ++ L
Sbjct: 162 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPL 195


>gi|302519737|ref|ZP_07272079.1| formylmethionine deformylase [Streptomyces sp. SPB78]
 gi|302428632|gb|EFL00448.1| formylmethionine deformylase [Streptomyces sp. SPB78]
          Length = 403

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 18/162 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLA 48
           M +  +++   P L   + P+ + +             +I  ++D +L       G+GL+
Sbjct: 229 MGELGVLLEGAPEL---AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLS 285

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           A QIGV     ++     A        +NP++I  S + +   E C   P  R    R  
Sbjct: 286 APQIGVPRAAALVQPPWGAPAVT---LLNPRVIAGSRETAEEYESCPGRPGPRTPTSRPN 342

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ITVR                LA  + HE+DHL G+L    L
Sbjct: 343 EITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLHPPRL 384


>gi|301633662|gb|ADK87216.1| peptide deformylase [Mycoplasma pneumoniae FH]
          Length = 193

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 16  RVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++P++  ++   ++ I  M+           E      GIG+AA QIG   ++  I L
Sbjct: 20  EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 79

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119
            D    ++  + INPKII  S + S     +        ++  V R  +IT+   D    
Sbjct: 80  MDG-GVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 138

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   I A GL   CLQHE DHL G  +   ++ L
Sbjct: 139 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPL 172


>gi|323353371|ref|ZP_08087904.1| peptide deformylase [Streptococcus sanguinis VMC66]
 gi|322121317|gb|EFX93080.1| peptide deformylase [Streptococcus sanguinis VMC66]
          Length = 136

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR+ S   E+ + + + L  ++ + +     + IGLAA  +GV  R+++           
Sbjct: 12  LRQPS---EQASREDLYLAQDLQDTLQANRENCIGLAANMVGVRKRVIIFLY-----GLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP + + S  +   +             +R   ITV Y+D N Q Q +   GL A
Sbjct: 64  PVVMFNPVLRSKSGPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|291551092|emb|CBL27354.1| N-formylmethionyl-tRNA deformylase [Ruminococcus torques L2-14]
          Length = 136

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYR 57
           + KP++     I  L + S    + +     +  ++L+ +       +G+AA  IGV  R
Sbjct: 1   MIKPIMR---DIFFLNQKSELATEAD---KQVAIDLLDTLKANEAGCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ +++             NPKI+  +  +   +       D     +R   I V Y D 
Sbjct: 55  IIAVNMGSFNIA-----MFNPKIVKRTGAYETEEGCLS--LDGVRSCRRYQEIEVEYQDM 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G  A  +QHE+DH +GIL 
Sbjct: 108 NFKKKREKYSGWTAQIIQHEIDHCDGILI 136


>gi|224542289|ref|ZP_03682828.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524831|gb|EEF93936.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM
           15897]
          Length = 137

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K +V   +  L +V+    K +  I   + + L+  +  + +G+A   IG    +++ 
Sbjct: 1   MIKEIVKD-NFFLSQVAEKATKEDLYIGTDLKDTLQA-HLHECVGMAGNMIGYNKAVIIF 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +        V  NP+II  S ++   +EGCLS    +  VKR   I V Y D + + 
Sbjct: 59  LEDEKM-----HVMYNPEIIKTSGNYHECEEGCLSHVGQK-SVKRYETIKVSYFDESFKK 112

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           +I    G  A  +QHE DHL GIL 
Sbjct: 113 KIKTYTGFTAQIIQHECDHLKGILI 137


>gi|239621599|ref|ZP_04664630.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515474|gb|EEQ55341.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 141

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++ ++    P L + S   E   +D+  +  ++ +    +    +G+AA  IGV  R+ 
Sbjct: 1   MQREIMTS-IPFLSQPSVEAENTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGVPKRI- 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP I      +   +       +      R   I V Y D   
Sbjct: 58  -IAFVDEDLGGRITVMFNPHITAQDGAYDASEGCLSLNGERH--TLRYQRIEVTYEDRRF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH +G++ 
Sbjct: 115 RERHATFTGFTAQIIQHEIDHCDGVII 141


>gi|322386870|ref|ZP_08060494.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
 gi|321269152|gb|EFX52088.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
          Length = 136

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           ++K +V   DP  L++ S P  K++   + L  ++ +    +    +GLAA  IG   R+
Sbjct: 1   MQKSIVK--DPFFLQQKSVPATKVD---LFLAQDLQDTLLAHRESCVGLAANMIGSQKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++           PMV  NP +I  S  +   +              R   ITV Y+D N
Sbjct: 56  IIFMY-----VMLPMVMFNPVLIQKSGPYETEEGCLSLAGSRP--TIRYQKITVEYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              + I  +   A   QHELDHL GIL 
Sbjct: 109 WLKKTITLEDFPAQICQHELDHLEGILI 136


>gi|322372342|ref|ZP_08046878.1| peptide deformylase [Streptococcus sp. C150]
 gi|321277384|gb|EFX54453.1| peptide deformylase [Streptococcus sp. C150]
          Length = 136

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP+V   D   L + S    K +  +   + + LE  Y    +G+AA  IGV  R+++
Sbjct: 1   MIKPIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLE-FYKDACVGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP +++ S  F   +       +     +R   I V Y+D    
Sbjct: 58  VNI-----GFVNLVMFNPVLVSKSSLFQTEESCLS--LEGSRPTRRYESIEVAYLDEQWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   G+LA  +QHELDHL GI+ 
Sbjct: 111 PKQLSFSGMLAQIIQHELDHLEGIII 136


>gi|293365837|ref|ZP_06612542.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307703294|ref|ZP_07640239.1| polypeptide deformylase family protein [Streptococcus oralis ATCC
           35037]
 gi|322375601|ref|ZP_08050113.1| peptide deformylase [Streptococcus sp. C300]
 gi|291315661|gb|EFE56109.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307623160|gb|EFO02152.1| polypeptide deformylase family protein [Streptococcus oralis ATCC
           35037]
 gi|321279309|gb|EFX56350.1| peptide deformylase [Streptococcus sp. C300]
          Length = 136

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           ++K +V   D   L +VS+P  + +   + L  ++ +         +GLAA  IGV  R+
Sbjct: 1   MEKKIVR--DVLFLSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +         PMV  NP ++++   +   +              R   ITV Y D  
Sbjct: 56  IIFN-----LGLVPMVMFNPVLLSYIGPYETEEGCLSLTGVRS--TTRYETITVSYRDSK 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q Q I   G  A   QHELDHL G + 
Sbjct: 109 WQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|291524049|emb|CBK89636.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629]
 gi|291527891|emb|CBK93477.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale M104/1]
          Length = 136

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K ++   DP  L + S    + +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVKKIMR--DPLFLAQKSVDATEDD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+          P  F     +      +   E      D      R   I V Y+D N
Sbjct: 56  IVV-------AAGPFQFAMINPVITGKSGAFQTEEGCLSLDGVRPCTRYKEIEVDYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +     G  A  +QHE+DH NG++ 
Sbjct: 109 FKKKHGKYTGWTAQIIQHEVDHCNGVVI 136


>gi|26554017|ref|NP_757951.1| peptide deformylase [Mycoplasma penetrans HF-2]
 gi|32363151|sp|Q8EVJ8|DEF_MYCPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma penetrans HF-2]
          Length = 186

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 15/161 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53
           +V   +P++ +    +   +  +  ++I  ML           +      GIG+AA+Q+G
Sbjct: 12  IVYDNNPVMHKPIEDVVFPLTKEDEHVISQMLSYVDASYEGEADKYDIRAGIGIAAIQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFIT 111
              +++ I L D       ++     I   +        +       D++    R + + 
Sbjct: 72  CPKKIIYIHLDDKNGEHKYLMANPKIIKESTSKMYLKNGEGCLSVKKDHKGLSIRKSIVW 131

Query: 112 VRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V+ +D    +   + A  LLA C QHE+DH N   + + ++
Sbjct: 132 VKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRIN 172


>gi|218283358|ref|ZP_03489392.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989]
 gi|218215912|gb|EEC89450.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989]
          Length = 145

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP++   +  L   S P  K+++ +   + + L+  YS   +G+AA  IGV   +++ 
Sbjct: 10  MIKPIMKD-EAFLAIKSAPATKMDTQVAQDLKDTLQA-YSDQCVGMAANMIGVSKNIIIF 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            ++         + +    IT        +EGCLS+   R +  R   ITV Y D + + 
Sbjct: 68  AIEPAQ------IVMYNPKITKKSRPYKVKEGCLSLEGER-NTTRYENITVEYQDESFKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
                 G +A  +QHE+DH NGI+ 
Sbjct: 121 CKQSYSGFVAQIIQHEIDHCNGIII 145


>gi|255018922|ref|ZP_05291048.1| peptide deformylase [Listeria monocytogenes FSL F2-515]
          Length = 65

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V RS  +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 1   GYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 52


>gi|270292421|ref|ZP_06198632.1| peptide deformylase [Streptococcus sp. M143]
 gi|306824859|ref|ZP_07458203.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|270278400|gb|EFA24246.1| peptide deformylase [Streptococcus sp. M143]
 gi|304433070|gb|EFM36042.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 136

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           ++K +V   D   L +VS+P  + +   + L  ++ +         +GLAA  IGV  R+
Sbjct: 1   MEKKIVR--DVLFLSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +         PMV  NP ++++   +   +              R   ITV Y D  
Sbjct: 56  IIFN-----LGLVPMVMFNPILLSYKGPYETEEGCLSLTGVRT--TTRYETITVSYRDSK 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q Q I   G  A   QHELDHL G + 
Sbjct: 109 WQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|313895677|ref|ZP_07829233.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975803|gb|EFR41262.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 137

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + +P+V   D   L + S    K +   +++ +++L+ + S     +GLAA  IG   R+
Sbjct: 1   MVRPIVK--DAMFLGQPSEEAVKSD---LSIANDLLDTLKSHVGHCVGLAANMIGEKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + + +            +N +I+  S +    +EGCLS+P  R  ++ +    V Y D  
Sbjct: 56  IAVCIGKSHLV-----MLNAEIVKSSTEQYETEEGCLSLPGQRKTMRHTWIE-VTYRDIK 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NGIL 
Sbjct: 110 FRKQKNKFSGFTAQIIQHEIDHCNGILI 137


>gi|318060496|ref|ZP_07979219.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 426

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLA 48
           M +  +++   P L   + P+ + +             +I  ++D +L       G+GL+
Sbjct: 262 MGELGVLLEGAPEL---AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLS 318

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           A QIGV     ++     A        +NP++I  S + +   E C           R  
Sbjct: 319 APQIGVPRAAALVQPPWGAPAVT---LLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPN 375

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ITVR                LA  + HE+DHL G+L   HL
Sbjct: 376 EITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLHPPHL 417


>gi|317488618|ref|ZP_07947161.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325831659|ref|ZP_08164876.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|316912270|gb|EFV33836.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325486530|gb|EGC88979.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 139

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60
           + K LV   + IL +V  P    ++    + D+++E          LAA QIG    ++ 
Sbjct: 1   MIKELVKD-EAILSQVCTPATTDDA---QVADDLVETLTSMDGAACLAANQIGATTCIIA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-CLSIPDYRADVKRSAFITVRYMDCNA 119
               D      P V  NP+++     F   +    L          R        +D   
Sbjct: 57  YLDDDDQ----PHVMYNPRLLQALGAFKAVEGCLSLEADSKVTRFDRIKVGYSELVDGEL 112

Query: 120 QHQIIYADGLLATCLQHELDHLNGIL 145
           + +    +G  A  +QH +DH  G L
Sbjct: 113 KPRKKDFNGWTAQIIQHGIDHCKGKL 138


>gi|149411900|ref|XP_001510213.1| PREDICTED: similar to bromodomain adjacent to zinc finger domain,
           1A [Ornithorhynchus anatinus]
          Length = 200

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I    A   R   +   ++D N +  +  A G  A  +QHE+DHL G L+ID +  
Sbjct: 131 GIKYGDAGRARRTDVPGHWLDENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKMDS 187


>gi|42519881|ref|NP_965811.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|41584171|gb|AAS09777.1| polypeptide deformylase [Lactobacillus johnsonii NCC 533]
          Length = 137

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   D + L+  S P  K +      + + L +       GLAA  IGV  R++
Sbjct: 1   MAVKPIIH--DELSLKFKSLPATKQDLGAATDLKDTL-LSNKDRAAGLAANMIGVQKRII 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + +        P+V +NP I+   D +  Y+       +     +R   ITV+Y + N 
Sbjct: 58  ALFVGP-----LPIVMLNPIIVAQDDKYLAYEGCLSLTGERP--TERYKTITVKYQNENL 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NGIL 
Sbjct: 111 ETRQQSFSDFTAEVIQHEVDHCNGILI 137


>gi|71654685|ref|XP_815957.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70881052|gb|EAN94106.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 9   FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +P   L R +  ++K         + + ++ ++      I  +A +      +V+I    
Sbjct: 45  YPHRSLTRPALRLDKTQVNTPLFQSQLLSLKKMASDLRCISFSAPKGHWDATVVLIKGHP 104

Query: 66  HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                   V     +    T         E C+S     A V R   +T    D     +
Sbjct: 105 DEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQCVTCSGWDEYGNEK 164

Query: 123 IIYADGLLATCLQHELDHLNGILFI 147
               DG+ A CL HELDHL+G   +
Sbjct: 165 TELLDGMRARCLMHELDHLHGKTIL 189


>gi|293375957|ref|ZP_06622217.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325841958|ref|ZP_08167535.1| peptide deformylase [Turicibacter sp. HGF1]
 gi|292645394|gb|EFF63444.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325489791|gb|EGC92146.1| peptide deformylase [Turicibacter sp. HGF1]
          Length = 136

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59
           + +P++   +  L + S P  K +  +   ++++++ + +     +G+AA  IG+  R++
Sbjct: 1   MIRPIMKD-EKFLAQKSVPATKADLAV---VEDLIDTLRANLERCVGMAANMIGIKKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V  + +       +  INP I+     +   +     +        R   I V Y+D   
Sbjct: 57  VFAIGE-----IIVPMINPVIVKKEKSYVTEESCLSLVGFRE--TTRYETIEVEYLDKQF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q     G +A  +QHE+DH NGI+ 
Sbjct: 110 NKQKGTFTGFVAQIIQHEIDHCNGIII 136


>gi|329668141|gb|AEB94089.1| polypeptide deformylase [Lactobacillus johnsonii DPC 6026]
          Length = 137

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   D + L+  S P  K +      + + L +       GLAA  IGV  R++
Sbjct: 1   MAVKPIIH--DELSLKFKSLPATKQDLGAATDLKDTL-LANKDKAAGLAANMIGVQKRII 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + +        P+V +NP I+   D +  Y+       +     +R   ITV+Y + N 
Sbjct: 58  ALFVGP-----LPIVMLNPIIVAQDDKYLAYEGCLSLTGERP--TERYKNITVKYQNENL 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NGIL 
Sbjct: 111 ETRQQSFSDFTAEVIQHEVDHCNGILI 137


>gi|297205664|ref|ZP_06923060.1| peptide deformylase [Lactobacillus jensenii JV-V16]
 gi|297150242|gb|EFH30539.1| peptide deformylase [Lactobacillus jensenii JV-V16]
          Length = 136

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K ++   D   L+R S P  K +  I   + + L+       +G+AA  IG   R+++
Sbjct: 1   MIKEIIK--DEMFLKRKSLPATKADLSIGRDLRDTLQANKER-CVGMAANMIGYSKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++             NP I+   + + V +              R   + V + D   +
Sbjct: 58  VNIGFFDVV-----MFNPVILERKNPYQVSEGCLSLSGSRN--TLRFKEVKVAFFDEKWE 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
           +Q +   G  A   QHE+DHL GIL 
Sbjct: 111 NQELTLTGFAAEICQHEMDHLEGILI 136


>gi|116630410|ref|YP_819563.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|238852749|ref|ZP_04643155.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|282850746|ref|ZP_06260121.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311111595|ref|ZP_07712992.1| peptide deformylase [Lactobacillus gasseri MV-22]
 gi|116095992|gb|ABJ61144.1| N-formylmethionyl-tRNA deformylase [Lactobacillus gasseri ATCC
           33323]
 gi|238834599|gb|EEQ26830.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|282558154|gb|EFB63741.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311066749|gb|EFQ47089.1| peptide deformylase [Lactobacillus gasseri MV-22]
          Length = 137

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYR 57
           M  KP++   D + L+  S  + K +   +   +++ + + + +G   GLAA  IGV  R
Sbjct: 1   MSVKPIIH--DELSLKFKSTLVTKQD---LAAAEDLKDTLIANNGKAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+  +D +  Y+       +     +R   ITV+Y + 
Sbjct: 56  IIALFVGP-----LPIVMLNPIIVKKADKYLAYEGCLS--LEGERPTERYKKITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +       +A  +QHE+DH NGIL 
Sbjct: 109 NFETRQQAFSDFVAEVIQHEVDHCNGILI 137


>gi|169350971|ref|ZP_02867909.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552]
 gi|169292033|gb|EDS74166.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552]
          Length = 136

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 15/147 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           + K +V   D   L + S      + + + +++++L+ +       +G+AA  IG   ++
Sbjct: 1   MIKKIVK--DKLFLSQKS---SLASKEDLYIVEDLLDTIKANKDKCVGMAANMIGYNKQI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VI+  D          INP I   +  +   +          A   R   ITV Y+D N
Sbjct: 56  IVIENNDEYLV-----MINPSITKTTGKYETNEGCLCHETLMPAL--RYHKITVEYLDLN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145
            + +        A  +QHE+DH NGIL
Sbjct: 109 FKKKTRTFKDYSAQIIQHEIDHCNGIL 135


>gi|331083476|ref|ZP_08332588.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404169|gb|EGG83717.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + KP++     I  L + S P  K +  +   + + L        +G+AA  IGV   ++
Sbjct: 1   MVKPIMK---DIFFLGQKSEPATKADLQVGKDLMDTLAANR-EGCVGMAANMIGVKKSVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++         +V  NP ++     +   +         +    R   I V Y+D N 
Sbjct: 57  IVNM-----GFVDVVMFNPVLVRKESPYETEEGCLSLTGVRK--TTRYQMIEVEYLDMNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q +  DG  A   QHELDHL GIL 
Sbjct: 110 KKQKLKLDGWTAQICQHELDHLEGILI 136


>gi|259503598|ref|ZP_05746500.1| peptide deformylase [Lactobacillus antri DSM 16041]
 gi|259168422|gb|EEW52917.1| peptide deformylase [Lactobacillus antri DSM 16041]
          Length = 136

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L +VS+   + +  I   + + L        +G+AA  IGV  R+++  L        P+
Sbjct: 12  LSQVSQLASRADLPIAQDLKDTLAAN-GDHCVGMAANMIGVPKRVIIASLGP-----FPV 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP II  S  +   +              R   ITVR+ +     Q +  D   A  
Sbjct: 66  VMFNPVIIAKSGPYQTQEGCLSLAGQRS--TTRFQKITVRFTNEQWTQQELSLDAFPAEI 123

Query: 134 LQHELDHLNGILF 146
           +QHE+DH NGIL 
Sbjct: 124 VQHEIDHCNGILI 136


>gi|317488626|ref|ZP_07947169.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325831636|ref|ZP_08164853.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|316912278|gb|EFV33844.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325486507|gb|EGC88956.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 136

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + +P++   +  +L++ S    + +  I     ++L+    +    +G+AA  IG + R+
Sbjct: 1   MIRPIMR--NELVLQQPSTAATEADLPIAQ---DLLDTLAAHRHSCVGMAANMIGEVKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +  D +           +NP+I++ +  +   +          A   R   I V Y D  
Sbjct: 56  IAFDNEGAYLA-----MLNPEIVSRAGAYETEEGCLSLAGTRPA--TRYRTIKVSYQDLA 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + ++    G  A  +QHE+DH NG+L 
Sbjct: 109 MKPRVKTFTGFTAQIIQHEIDHCNGVLI 136


>gi|323341211|ref|ZP_08081458.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
 gi|323091405|gb|EFZ34030.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
          Length = 136

 Score = 57.1 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 2   VKKPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + KP+       IL + S      +   +    ++++ + +       +AA  IG+  R+
Sbjct: 1   MIKPINKDVG--ILSKKS---TTASKKDLQTASDLIDTLKAHQNSCVGMAANMIGINKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +            P++ INP+I      ++  +          A  KR   I V Y+D N
Sbjct: 56  IACFFGP-----FPVLMINPEITRKFGPYTAEEGCLSLEGKRVA--KRFKHIEVTYLDEN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              Q    D   A  +QHE+DH NGIL 
Sbjct: 109 FAKQRQKLDDFNAQIVQHEIDHCNGILI 136


>gi|222151046|ref|YP_002560200.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402]
 gi|222120169|dbj|BAH17504.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402]
          Length = 136

 Score = 57.1 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 4/131 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K L+   + +L R  + + + ++ +  LI ++ + ++  +G+G+AA QIGV  ++ ++
Sbjct: 1   MIKQLIEEQNSLLHREVKDVTQFDASLKALIKDLEDTLFHHNGVGIAAPQIGVDLKVALV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +  +NPKI+++S++     EGCLSIP     V RS  I +   D +   
Sbjct: 61  ----DMEADGILQLVNPKIVSYSEETESDVEGCLSIPGVFGLVDRSIEIVIEANDLDGNK 116

Query: 122 QIIYADGLLAT 132
             + A   +A 
Sbjct: 117 IEMTAYDDIAR 127


>gi|309776085|ref|ZP_07671076.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916036|gb|EFP61785.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 137

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 16/149 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNL--IDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           + + +V   DP L          ++ + +L  + ++L+    ++   +G+AA  IGVL R
Sbjct: 1   MIRDIVK--DPFLLS----CRSEDATLRDLQTMQDLLDTLQAHADHCVGMAANMIGVLKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++     +       + +NP II   +     +EGCL     +  V R   I V ++D 
Sbjct: 55  IIIFQDGGNYV-----IMLNPVIIKTGNKRYTTEEGCLCHDTKK-KVTRYEKIKVFFIDA 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +I   +G  A  +QHELDH +GIL 
Sbjct: 109 NGRKKIKTYEGFCAQIIQHELDHCDGILI 137


>gi|259048010|ref|ZP_05738411.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
 gi|259035349|gb|EEW36604.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
          Length = 137

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           ++K ++   DP  L + S   +        ++ ++ + +       +G+AA  IGV   +
Sbjct: 1   MQKNIMK--DPLFLSQKSSVADP--KADAQVVRDLQDTLRANRDRCVGMAANMIGVKKNI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++ +            +NP+I      +   +         +    R   I V Y D +
Sbjct: 57  IIVAIGPMDLV-----MLNPRITKKQGPYETEEGCLSHTGTKK--TTRYQTIEVAYTDPS 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +          A  +QHE+DHL GIL 
Sbjct: 110 GKKHTGTFTDFTAQVIQHEIDHLEGILI 137


>gi|212716409|ref|ZP_03324537.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660662|gb|EEB21237.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM
           16992]
          Length = 141

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++ ++    P L + S        + + +  ++ +    +    +G+AA  IGV  R+ 
Sbjct: 1   MQREIMTS-IPFLSQPSAE-ALNTPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRI- 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP I      +   +       + R    R   I V Y D   
Sbjct: 58  -IAFVDEDFGGRIFVMFNPTITAKDGAYDTSEGCLSLKGERR--TVRFQRIEVSYADRKF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH  GI+ 
Sbjct: 115 RERHATFTGFTAQIIQHEIDHCEGIII 141


>gi|322388290|ref|ZP_08061894.1| peptide deformylase [Streptococcus infantis ATCC 700779]
 gi|321140962|gb|EFX36463.1| peptide deformylase [Streptococcus infantis ATCC 700779]
          Length = 136

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LPLAKDLQDTLLANRESCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ ++        PMV  NP + +F   +   +              R   ITV Y D 
Sbjct: 55  VIIFNI-----GMIPMVMFNPVLQSFEGSYETEEGCLSLTGVRP--TTRYEKITVSYRDI 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           + Q Q I   G  A   QHELDHL GI+ 
Sbjct: 108 HWQEQTITLTGFPAQICQHELDHLEGIII 136


>gi|319938534|ref|ZP_08012927.1| peptide deformylase [Coprobacillus sp. 29_1]
 gi|319806298|gb|EFW02974.1| peptide deformylase [Coprobacillus sp. 29_1]
          Length = 137

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + +V   D  IL + S      +   M ++ ++ +    +    +G+AA  IG   R+
Sbjct: 1   MIRDIVT--DQFILSQKSVEATLDD---MAIVQDLRDTLVAHEDHCVGMAANMIGYHKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++   +        +     + T    +  ++     I +    VKR   I V Y D +
Sbjct: 56  IIVKNNNDHLV----MINPIILKTSGRYYDTHEGCLSHIGEKA--VKRYEKIKVEYKDIH 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +I   +G +A  +QHE+DH  GIL 
Sbjct: 110 FKVKIKTFEGYVAQIIQHEIDHCQGILI 137


>gi|291531177|emb|CBK96762.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum 70/3]
          Length = 136

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P  + +       +++LE     S   +G+AA  IGVL  ++ I+         
Sbjct: 12  LSQKSAPATEND---RQTGEDLLETLIANSERCVGMAANMIGVLKNIIAINDNGDYLL-- 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
                NP+II     +   +       D     KR   I VRY+D N + +I   +G  A
Sbjct: 67  ---MYNPEIIKSDGAYETEEGCLS--LDGVRKTKRYKKIKVRYLDRNFKIKIKTYEGFTA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DHL+GI+ 
Sbjct: 122 QIIQHEVDHLSGIII 136


>gi|226322583|ref|ZP_03798101.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758]
 gi|225209077|gb|EEG91431.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758]
          Length = 136

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 17/149 (11%)

Query: 2   VKKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           + KP++   F    LR+ +    K +  +     ++L+    +    +G+AA  IGV   
Sbjct: 1   MVKPIMRDLF---FLRQKAEKATKGDFPV---AIDLLDTLKAHEDGCVGMAANMIGVNKA 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ +++         +   NPKI+  +  +   +       D      R   I V Y D 
Sbjct: 55  IIAVNM-----GFMNVAMFNPKIVKRNGKYETEEGCLS--LDGVRKCVRYQEIKVEYEDI 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q     G  A  +QHE DHLNGI+ 
Sbjct: 108 NFKRQRQKYSGWTAQIIQHECDHLNGIII 136


>gi|238855159|ref|ZP_04645481.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|260665536|ref|ZP_05866382.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932572|ref|ZP_06337994.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|313473142|ref|ZP_07813626.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|238832240|gb|EEQ24555.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|239528614|gb|EEQ67615.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|260560657|gb|EEX26635.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303320|gb|EFA95500.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 136

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L+R S P  K +  I   + + L+       +G+AA  IG   R+++
Sbjct: 1   MIKEIVK--DEMFLKRKSLPATKADLPIGQDLRDTLQANKER-CVGMAANMIGYSKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  N  I+   D + V +              R   + V ++D   +
Sbjct: 58  VNI-----GFLNVVMFNSVILERKDPYQVSEGCLSLSGSRN--TLRFKEVKVAFLDEKWE 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
           +Q +   G  A   QHE+DHL GIL 
Sbjct: 111 NQELTLTGFAAEICQHEMDHLEGILI 136


>gi|256852171|ref|ZP_05557557.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661796|ref|ZP_05862707.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|282933528|ref|ZP_06338899.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|256615217|gb|EEU20408.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547543|gb|EEX23522.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|281302342|gb|EFA94573.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 136

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K ++   D   L+R S P  K +  I   + + L+       +G+AA  IG   R+++
Sbjct: 1   MIKEIIK--DEMFLKRKSLPATKADLSIGRDLRDTLQANKER-CVGMAANMIGYSKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++             NP I+   + + V +              R   + V + D   +
Sbjct: 58  VNIGFFDVV-----MFNPVILERKNPYQVSEGCLSLSGSRN--TLRFKEVKVAFFDEKWE 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   G  A   QHE+DHL GIL 
Sbjct: 111 KQELTLTGFAAEICQHEMDHLEGILI 136


>gi|104773326|ref|YP_618306.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422407|emb|CAI96944.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 143

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NP I+  S  +   +              R   IT
Sbjct: 56  IGVNKAIIAVN-----AGFLPIVMLNPTIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|302766599|ref|XP_002966720.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii]
 gi|300166140|gb|EFJ32747.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii]
          Length = 277

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 36/139 (25%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V++ DP LR  +  I   +  +  L   ML+V Y  DG+GL+A Q+GV  RL+V + 
Sbjct: 142 LSIVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNP 198

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +    +                                          ++  D N +   
Sbjct: 199 EGERGKGKED---------------------------------RYRSELKAQDINGKKFG 225

Query: 124 IYADGLLATCLQHELDHLN 142
               G  A   +HE DHL 
Sbjct: 226 TAFRGWTAGIFRHEYDHLE 244


>gi|260589802|ref|ZP_05855715.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|331083229|ref|ZP_08332345.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539843|gb|EEX20412.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|330404618|gb|EGG84158.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + K +V     I  L + S P  K +  I   +++ L        +G+AA  IGV   ++
Sbjct: 1   MVKSIVK---DIFFLAQKSEPATKEDLHIGQDLEDTLAANRER-CVGMAANMIGVKKNII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +I++         ++  NP I+     +   +          A   R   I V Y D N 
Sbjct: 57  IINM-----GFVDVLMFNPVIVKKDTPYETEEGCLSLEGVRPAV--RFQNIEVEYYDKNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q     G  A   QHE+DHL+GI+ 
Sbjct: 110 KKQRQKLTGWTAQICQHEIDHLDGIII 136


>gi|213691471|ref|YP_002322057.1| formylmethionine deformylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522932|gb|ACJ51679.1| formylmethionine deformylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457544|dbj|BAJ68165.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 139

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++P++      LR  S  +     +   +I+++++      +  +G+AA  IGV  R+ 
Sbjct: 1   MQRPIMTS-RSFLRTPSE-VAGPGDE--QVIEDLVDTLEANRSRCVGMAANMIGVGKRI- 55

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP I      F   +       + R    R   I V Y D   
Sbjct: 56  -IVFVDEDLGGRITVMFNPVITASDGAFDAQEGCLSLTGERR--TLRYRRIEVNYEDRRF 112

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH NGI+ 
Sbjct: 113 RARHATFAGWTAQIIQHEVDHCNGIII 139


>gi|116334552|ref|YP_796079.1| peptide deformylase [Lactobacillus brevis ATCC 367]
 gi|116099899|gb|ABJ65048.1| N-formylmethionyl-tRNA deformylase [Lactobacillus brevis ATCC 367]
          Length = 136

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLV 59
           + K +V   +  L + S+P    +      I ++++ +     + +G+AA  IGV  R++
Sbjct: 1   MIKSVVHD-EARLVQRSQPATPADG---QTITDLIDTLRANQENCVGMAANMIGVNRRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+        P+  INP+I   +  +   +       +      R   I V +++ N 
Sbjct: 57  VVDM-----GILPVAMINPEITKMAGPYDTQEGCLSLSGERPTH--RFKTIDVTFLNQNF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q Q     G +A  +QHE++H NGIL 
Sbjct: 110 QKQRQTFTGFVAQIIQHEVEHCNGILI 136


>gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula]
          Length = 241

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 7   VIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           V   DP+L   ++ ++    ++  +  +ID+M+ VM    G+GLAA QIGV  R++V++ 
Sbjct: 82  VKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLED 141

Query: 64  QDHAHRKNP 72
            +      P
Sbjct: 142 TEEFISYAP 150


>gi|309798745|ref|ZP_07693009.1| polypeptide deformylase [Streptococcus infantis SK1302]
 gi|308117562|gb|EFO54974.1| polypeptide deformylase [Streptococcus infantis SK1302]
          Length = 136

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++K +V   D I L +VS+P  + +  +   + + LE       +GLAA  IGV  R+++
Sbjct: 1   MEKKIVR--DMIFLSQVSQPASQEDLPLAKDLQDTLEANR-ETCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++        PMV  NP + +F   +   +              R   ITV Y D + +
Sbjct: 58  FNI-----GMIPMVMFNPVLKSFEGPYETEEGCLSLTGVRP--TTRYEKITVSYRDIHWK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|225350925|ref|ZP_03741948.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158381|gb|EEG71623.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 141

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++ ++    P L + S        + + +  ++ +    +    +G+AA  IGV  R+ 
Sbjct: 1   MQREIMTS-IPFLSQPSAE-ALNTPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRI- 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP I      +   +       + R    R   I V Y D   
Sbjct: 58  -IAFVDEDFGDRIFVMFNPTITAKDGAYDASEGCLSLKGERR--TVRFQRIEVSYADRKF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH  GI+ 
Sbjct: 115 RERHATFTGFTAQIIQHEIDHCEGIII 141


>gi|296875884|ref|ZP_06899945.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433125|gb|EFH18911.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           +KK +V     +L   + S        +   L  ++ + + +   + +GLAA  IGV  R
Sbjct: 1   MKKNIVK---DVLFLGQKSEEAT---PEDRTLALDLQDTLNAHLLECVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            ++I +             NP ++     +   +     +        R   I+V Y D 
Sbjct: 55  AIIIRMGSENLV-----LFNPVLLEKKKPYQTEEGCLSLVGSRP--TTRYEEISVAYRDV 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + + I+  G  A   QHE+DHL GI+ 
Sbjct: 108 NWKAKKIHLSGFPAQICQHEMDHLEGIII 136


>gi|325289165|ref|YP_004265346.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964566|gb|ADY55345.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + + ++   D   LR  S P    +  +   + ++L+ + +  G    LAA  IGV  R+
Sbjct: 1   MVQAIIK--DEAFLRIPSAPAAAEDLSV---VQDLLDTLSANAGCCVGLAANMIGVAKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +  +           +NP+I+  S+ +   +         +A  +R   I V+Y D  
Sbjct: 56  IAVTAEGGYLV-----MLNPEIVKQSEPYETEEACLSLAGTRKA--RRCKNIRVQYQDTA 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q ++    G  A  +QHE+DH NGIL 
Sbjct: 109 LQTRLQNFKGFTAQIIQHEIDHCNGILI 136


>gi|317482099|ref|ZP_07941123.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916458|gb|EFV37856.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 139

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++P++      LR  S   E        +I+++++      +  +G+AA  IGV  R+ 
Sbjct: 1   MQRPIMTS-RSFLRTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI- 55

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V +NP I      F   +       + R    R   I V Y D   
Sbjct: 56  -IVFVDEDLGGRITVMLNPVITASDGAFDTQEGCLSLTGERR--TLRYRRIEVNYEDRRF 112

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH NGI+ 
Sbjct: 113 RARHATFTGWTAQIIQHEVDHCNGIII 139


>gi|195978210|ref|YP_002123454.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974915|gb|ACG62441.1| peptide deformylase Def [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L++ ++P  K +  I   + + L   Y    +GLAA  IG   R+++
Sbjct: 1   MIKKIVK--DTFFLQQKAQPATKKDLWIGQDLQDTLA-YYRDSCLGLAANMIGENKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +          V         +   +   E        +   KR   I V Y+D +  
Sbjct: 58  VSMGFVDLVMFNPVLT-------AKRGAFEAEESCLSLTGQRRTKRYQEIKVDYLDTHWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHELDHL GIL 
Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGILI 136


>gi|307708362|ref|ZP_07644829.1| peptide deformylase [Streptococcus mitis NCTC 12261]
 gi|307615808|gb|EFN95014.1| peptide deformylase [Streptococcus mitis NCTC 12261]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++    +   +             KR   I V Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSSEGVYETEEGCLSLTGVRP--TKRYEIIRVAYCDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|154486846|ref|ZP_02028253.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis
           L2-32]
 gi|154084709|gb|EDN83754.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis
           L2-32]
          Length = 141

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++ ++    P L + S   E    + + +  ++ +    +    +G+AA  IGV  R+ 
Sbjct: 1   MQREIMTS-IPFLSQPSAAAEN-TEEDLAVAQDLKDTLDAHRNGCVGMAANMIGVPKRI- 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V  NP I      F   +              R   I V YMD   
Sbjct: 58  -IAFVDEDFGGRIFVMFNPHITAEDGAFDTAEGCLS--LQGERRTVRYQRIEVDYMDRKF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH +G++ 
Sbjct: 115 RERHAAFTGFTAQIIQHEIDHCDGVII 141


>gi|148988601|ref|ZP_01820034.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|148990374|ref|ZP_01821546.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|149021827|ref|ZP_01835834.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168493454|ref|ZP_02717597.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|147924329|gb|EDK75421.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|147925802|gb|EDK76877.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|147930063|gb|EDK81050.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|183576408|gb|EDT96936.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR     + Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETTRLAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|329116594|ref|ZP_08245311.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
 gi|326906999|gb|EGE53913.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   DP  L   ++   K +  I   + + L   +    IGLAA  IG    +++
Sbjct: 1   MLRTIVK--DPLFLSEKAQVATKEDLWIGKDLQDTL-TYHRDRCIGLAANMIGEKKAVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP+II  SD +   +             KR   ITVRY+D N +
Sbjct: 58  ISM-----GFVDLVMFNPQIIKQSDVYQTEESCLSLTGSKP--TKRFETITVRYLDMNWR 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHE+DHL G L 
Sbjct: 111 EKNLTLTGLPAQICQHEMDHLEGKLI 136


>gi|116513303|ref|YP_812209.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092618|gb|ABJ57771.1| N-formylmethionyl-tRNA deformylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 143

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAVSD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NPKI+  S  +   +              R   IT
Sbjct: 56  IGVNKAIIAVN-----AGFLPIVMLNPKIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|315613522|ref|ZP_07888429.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
 gi|315314213|gb|EFU62258.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           ++K +V   D   L +VS+P  + +   + L  ++ +         +GLAA  IGV  R+
Sbjct: 1   MEKKIVR--DVLFLSQVSKPASQED---IYLARDLQDTLLANRETCVGLAANMIGVQKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +         PMV  NP +++    +   +              R   ITV Y D  
Sbjct: 56  IIFN-----LGLVPMVMFNPILLSNKGPYETEEGCLSLTGVRP--TTRYETITVSYRDSK 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q   I   G  A   QHELDHL G + 
Sbjct: 109 WQELTITLTGFPAQICQHELDHLEGRII 136


>gi|9957264|gb|AAG09295.1|AF177768_1 ORF260 [Trypanosoma brucei]
 gi|261335512|emb|CBH18506.1| polypeptide deformylase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 260

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 9   FPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +P   L R +  +E          + + N+ ++      I  +A +      +V+I    
Sbjct: 45  YPHRSLTRPALRLERHQVNTPLFHSQLLNLNKMATDLQCISFSAPKGHWDAAIVLIKGHP 104

Query: 66  HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +                            E C+S     A V R   IT   +D     +
Sbjct: 105 NEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSITCSGLDEYGNEK 164

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
               DG+ A CL HELDHL+G   +D
Sbjct: 165 TEVLDGMRARCLMHELDHLSGKTILD 190


>gi|325124924|gb|ADY84254.1| Polypeptide deformylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 143

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NPKI+  S  +   +              R   IT
Sbjct: 56  IGVNKAIIAVN-----AGFLPIVMLNPKIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|149007536|ref|ZP_01831171.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|149007898|ref|ZP_01831485.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147760625|gb|EDK67599.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147760895|gb|EDK67865.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|332074306|gb|EGI84783.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR     + Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETTRLAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|296454738|ref|YP_003661881.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184169|gb|ADH01051.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 134

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 14  LRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           LR  S      +   I +L+D +      +  +G+AA  IGV  R+  I   D       
Sbjct: 7   LRTPSEAAGPGDEATIQDLVDTLEA--NRSRCVGMAANMIGVSKRI--IVFVDEDLGGRI 62

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            V +NP I      F   +       + R    R   I V Y D   + +     G  A 
Sbjct: 63  TVMLNPVITASDGAFDTQEGCLSLTGERR--TLRCRRIEVNYEDRRFRARHATFTGWTAQ 120

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH NGI+ 
Sbjct: 121 IIQHEVDHCNGIII 134


>gi|23466247|ref|NP_696850.1| peptide deformylase [Bifidobacterium longum NCC2705]
 gi|189440729|ref|YP_001955810.1| peptide deformylase [Bifidobacterium longum DJO10A]
 gi|322689813|ref|YP_004209547.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691751|ref|YP_004221321.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326994|gb|AAN25486.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189429164|gb|ACD99312.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|320456607|dbj|BAJ67229.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461149|dbj|BAJ71769.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 139

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 10/147 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++P++      LR  S   E        +I+++++      +  +G+AA  IGV  R+ 
Sbjct: 1   MQRPIMTS-RSFLRTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI- 55

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        V +NP I      F   +       + R    R   +        A
Sbjct: 56  -IVFVDEDLGGRITVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYENRRFRA 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +H      G  A  +QHE+DH NGI+ 
Sbjct: 115 RHATFA--GWTAQIIQHEVDHCNGIII 139


>gi|300362713|ref|ZP_07058888.1| peptide deformylase [Lactobacillus gasseri JV-V03]
 gi|300353141|gb|EFJ69014.1| peptide deformylase [Lactobacillus gasseri JV-V03]
          Length = 137

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYR 57
           M  KP++   D + L+  S          +    ++ + + + +G   GLAA  IGV  R
Sbjct: 1   MSVKPIIH--DELSLKFKS---TLATKQDLTTAKDLKDTLLANNGKAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+  +D +  Y+       +     +R   ITV+Y + 
Sbjct: 56  IIALFVGP-----LPIVMLNPIIVKKTDKYLAYEGCLS--LEGERPTERYKKITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +       +A  +QHE+DH NGIL 
Sbjct: 109 NFETRQQDFSDFVAEVIQHEVDHCNGILI 137


>gi|167751759|ref|ZP_02423886.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702]
 gi|167655567|gb|EDR99696.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702]
 gi|291557962|emb|CBL35079.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum V10Sc8a]
          Length = 136

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P  + +       +++LE     S   +G+AA  IG+L  ++ I+         
Sbjct: 12  LSQKSAPATEND---RQTGEDLLETLIANSEHCVGMAANMIGILKNIIAINDNGDYLL-- 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
                NP+II     +   +       D     KR   I VRY+D N + +I   +G  A
Sbjct: 67  ---MYNPEIIKSDGAYETEEGCLS--LDGLRKTKRYKKIKVRYLDRNFKIKIKTYEGFTA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE DHL+GI+ 
Sbjct: 122 QIIQHETDHLSGIII 136


>gi|313890594|ref|ZP_07824222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121111|gb|EFR44222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 136

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   DP  L+++S+   K +  I   + + L   +    +GLAA  IG   R+++
Sbjct: 1   MIRQIVK--DPFFLQQISKQATKEDLPIGKDLQDTL-SFHREHCLGLAANMIGESKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         ++  NPK++  ++ +   +       + +   +R   ITV Y+D N +
Sbjct: 58  ISM-----GFVDILMFNPKLVKKTNPYVTEESCLSLSGNQK--TQRYQKITVEYLDLNWR 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +  +GL A   QHELDHL+GIL 
Sbjct: 111 KKSLSLNGLAAQICQHELDHLDGILI 136


>gi|229826625|ref|ZP_04452694.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC
           49176]
 gi|229789495|gb|EEP25609.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC
           49176]
          Length = 138

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + LV   D   LR  S P+ K +   M +++++ +    Y+ + +G++A  IG+   +
Sbjct: 1   MVRELVK--DQFFLRLKSEPVTKDD---MAVVEDLKDTLKAYADECVGMSANMIGINKAV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + I  ++          +NPKII  S  +   +       + +A   R   IT+ Y D +
Sbjct: 56  IAIQPENSDVMTV---MLNPKIIKKSGAYETEEGCMCLEGERKAV--RHRNITLEYFDED 110

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +  I    G +A  ++HE DHL GI+ 
Sbjct: 111 FKKHIKLYSGYIAEIIEHECDHLEGIII 138


>gi|257790523|ref|YP_003181129.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
 gi|257474420|gb|ACV54740.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
          Length = 139

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60
           + K LV   +  L +V  P     ++   + D+++E          LAA QIG    ++ 
Sbjct: 1   MIKELVKD-EATLSQVCTPAT---AEDAQVADDLVETLTSMDGAACLAANQIGATTCIIA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-CLSIPDYRADVKRSAFITVRYMDCNA 119
               D      P V  NP+++     F   +    L          R        +D   
Sbjct: 57  YLDDDDQ----PHVMYNPRLLQALGAFKAVEGCLSLEADSKVTRFDRIKVGYSELVDGEL 112

Query: 120 QHQIIYADGLLATCLQHELDHLNGIL 145
           + +    +G  A  +QH +DH  G L
Sbjct: 113 KPRKKDFNGWTAQIIQHGIDHCKGKL 138


>gi|322411580|gb|EFY02488.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 136

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   D   L++ S+   K +  I   + + L   +    +GLAA  IG   R+++
Sbjct: 1   MIREIVT--DTFFLQQKSKAATKEDLWIGQALQDTL-SFHRDHCLGLAANMIGEQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP I++  + +   +         +   KR   ITV Y+D N +
Sbjct: 58  ISM-----GFVDLVMFNPVIVSKREAYETEESCLSLTGSRQ--TKRYTSITVEYVDLNWR 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHELDHL GIL 
Sbjct: 111 PKRLRLSGLPAQICQHELDHLEGILI 136


>gi|323465635|gb|ADX69322.1| Polypeptide deformylase [Lactobacillus helveticus H10]
          Length = 137

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           M  K ++   D + L + S      N + +N   ++ +      +   GLAA  IG   R
Sbjct: 1   MAVKKIIY--DQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++   +        P + INPKI+  S  +   +         +    R   ITV Y + 
Sbjct: 56  IIAFYI-----GSLPFMMINPKIVRKSGKYMTEEGCLSLSGQRQ--TVRYKEITVTYQNL 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           + +          A  +QHE+DH +GIL 
Sbjct: 109 DFKEVTQDFSEFTAETIQHEVDHCDGILI 137


>gi|148992559|ref|ZP_01822227.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|149003222|ref|ZP_01828118.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|149011789|ref|ZP_01832985.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|168488787|ref|ZP_02712986.1| polypeptide deformylase [Streptococcus pneumoniae SP195]
 gi|237650234|ref|ZP_04524486.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974]
 gi|237820884|ref|ZP_04596729.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758682|gb|EDK65679.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|147764220|gb|EDK71152.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|147928576|gb|EDK79590.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|183572696|gb|EDT93224.1| polypeptide deformylase [Streptococcus pneumoniae SP195]
 gi|332072344|gb|EGI82827.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I V Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRVAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|168483572|ref|ZP_02708524.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|172043063|gb|EDT51109.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I V Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRVAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|325685192|gb|EGD27314.1| formylmethionine deformylase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 143

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ +      +     + +    I       + +EGCLS+P  R    R   IT
Sbjct: 56  IGVNKAIIAV------NAGFLPIVMLNPKIVKGSGHYLAEEGCLSLPGER-PADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|300811934|ref|ZP_07092395.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313122848|ref|YP_004033107.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|300497131|gb|EFK32192.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279411|gb|ADQ60130.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 143

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +    K  ++      ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLNLSQPAA---KAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NPKI+  S  +   +              R   IT
Sbjct: 56  IGVNKAIIAVN-----AGFLPIVMLNPKIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|225868458|ref|YP_002744406.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus]
 gi|225701734|emb|CAW99099.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L++ ++P  K +  I   + + L   Y    +GLAA  IG   R+++
Sbjct: 1   MIKKIVK--DTFFLQQKAQPATKKDLWIGQDLQDTLA-YYRDSCLGLAANMIGENKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +          V         +   +   E        +    R   I V Y+D +  
Sbjct: 58  VSMGFVDLVMFNPVLT-------AKREAFEAEESCLSLTGQRRTTRYQEIKVDYLDTHWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHELDHL GIL 
Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGILI 136


>gi|15901392|ref|NP_345996.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15903451|ref|NP_359001.1| peptide deformylase [Streptococcus pneumoniae R6]
 gi|111658457|ref|ZP_01409130.1| hypothetical protein SpneT_02000357 [Streptococcus pneumoniae
           TIGR4]
 gi|116515494|ref|YP_816841.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|148984899|ref|ZP_01818152.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|148997383|ref|ZP_01824988.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|168491557|ref|ZP_02715700.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|168575253|ref|ZP_02721216.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|169834412|ref|YP_001694956.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396850|ref|YP_002038183.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|221232262|ref|YP_002511415.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854993|ref|YP_002736505.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|225857177|ref|YP_002738688.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225861384|ref|YP_002742893.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230075|ref|ZP_06963756.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255200|ref|ZP_06978786.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503289|ref|YP_003725229.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|307068194|ref|YP_003877160.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|14973038|gb|AAK75636.1| polypeptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15459060|gb|AAL00212.1| Formylmethionine deformylase [Streptococcus pneumoniae R6]
 gi|15858844|gb|AAK13237.1| peptide deformylase-like protein [Streptococcus pneumoniae]
 gi|116076070|gb|ABJ53790.1| polypeptide deformylase [Streptococcus pneumoniae D39]
 gi|147756438|gb|EDK63479.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|147922921|gb|EDK74037.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|168996914|gb|ACA37526.1| polypeptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|183574125|gb|EDT94653.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|183578738|gb|EDT99266.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|194356517|gb|ACF54965.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|220674723|emb|CAR69296.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225723305|gb|ACO19158.1| polypeptide deformylase [Streptococcus pneumoniae JJA]
 gi|225725217|gb|ACO21069.1| polypeptide deformylase [Streptococcus pneumoniae P1031]
 gi|225728377|gb|ACO24228.1| polypeptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238884|gb|ADI70015.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|301800382|emb|CBW33013.1| peptide deformylase [Streptococcus pneumoniae OXC141]
 gi|306409731|gb|ADM85158.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|327389740|gb|EGE88085.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 136

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I + Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|71413918|ref|XP_809080.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70873406|gb|EAN87229.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 9   FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +P   L R +  +++         + + ++ ++      I  +A +      +V+I    
Sbjct: 45  YPHRSLTRPALRLDRTQVNTPLFQSQLLSLKKMASDLRCISFSAPKGHWDATVVLIKSHP 104

Query: 66  HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                   V     +    T         E C+S     A V R   +T    D     +
Sbjct: 105 DEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSVTCSGWDEYGNEK 164

Query: 123 IIYADGLLATCLQHELDHLNGILFI 147
               DG+ A CL HELDHL+G   +
Sbjct: 165 TELLDGMRARCLMHELDHLHGKTIL 189


>gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group]
 gi|113532854|dbj|BAF05237.1| Os01g0555800 [Oryza sativa Japonica Group]
          Length = 121

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 45/78 (57%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            INPK+ T S   +++ EGCLS+  YRA V+R   + V  +D N +   + A G  A  L
Sbjct: 21  IINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARIL 80

Query: 135 QHELDHLNGILFIDHLSR 152
           QHE DHL G L++D +  
Sbjct: 81  QHECDHLEGTLYVDTMVP 98


>gi|227546595|ref|ZP_03976644.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212912|gb|EEI80791.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516343|emb|CBK69959.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           longum F8]
          Length = 134

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S   E        +I+++++      +  +G+AA  IGV  R+  I   D      
Sbjct: 7   LRTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI--IVFVDEDLGGR 61

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP I      F   +       + R    R   +        A+H      G  A
Sbjct: 62  ITVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYENRRFRARHATFA--GWTA 119

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 120 QIIQHEVDHCNGIII 134


>gi|167767071|ref|ZP_02439124.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1]
 gi|167711046|gb|EDS21625.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1]
 gi|291559591|emb|CBL38391.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium
           SSC/2]
          Length = 136

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K ++   DP  L + S    K +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MIKDIMK--DPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +            +    IT        +EGCLS+   R   KR   I V Y+D +
Sbjct: 56  IVVAVGPFQFA------MINPKITKKSGVFETEEGCLSLDGVR-PCKRYKEIEVDYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH  GI+ 
Sbjct: 109 FKEQHGKYSGWTAQIIQHEIDHCKGIVI 136


>gi|323141001|ref|ZP_08075911.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414538|gb|EFY05347.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
          Length = 136

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           ++KP++   +  L + S+P   ++  +     ++L+    ++   +GLAA  IGV   ++
Sbjct: 1   MEKPIIKD-EAFLAQKSQPATFMDIAVAQ---DLLDTLAAHADRCVGLAANMIGVQKCVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +++                 I       + +EGCLS+   RA V R   ITV Y D   
Sbjct: 57  AVNIGPTNIAML------NPEIIKRSGKYMTEEGCLSLEGERAAV-RYEKITVAYQDMQF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G  A  +QHE+DH +GI+ 
Sbjct: 110 KKCKQSFSGFTAQIIQHEIDHCHGIII 136


>gi|251782236|ref|YP_002996538.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390865|dbj|BAH81324.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323127088|gb|ADX24385.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 136

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   D   L++ S+   K +  I   + + L   +    +GLAA  IG   R+++
Sbjct: 1   MIREIVT--DTFFLQQKSKAATKEDLWIGQALQDTL-SFHRDHCLGLAANMIGEQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP +++  + +   +         +   KR   ITV Y+D N +
Sbjct: 58  ISM-----GFVDLVMFNPVMVSKKEAYETEESCLSLTGSRQ--TKRYTSITVEYVDLNWR 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHELDHL GIL 
Sbjct: 111 PKRLRLSGLPAQICQHELDHLEGILI 136


>gi|153855447|ref|ZP_01996578.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814]
 gi|149752101|gb|EDM62032.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814]
          Length = 136

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           + +P++     I  L + S P  + +     +  ++L+    +    +G+AA  IGV   
Sbjct: 1   MIRPIMK---DIFFLNQRSEPATEAD---KQVAVDLLDTLKAHEEGCVGMAANMIGVKKC 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ +++         +   NPKI+  S  +   +         +    R   I V Y D 
Sbjct: 55  IIAVNM-----GFMNVAMFNPKIVKRSGKYETEEGCLSLTGVRK--CTRYQEIEVEYQDM 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q     G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKQRQKYTGWTAQIIQHEVDHCHGIVI 136


>gi|161506686|ref|YP_001576636.1| peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|260101789|ref|ZP_05752026.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
 gi|160347675|gb|ABX26349.1| Polypeptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|260084400|gb|EEW68520.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
          Length = 137

 Score = 55.2 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           M  K ++   D + L + S      N + +N   ++ +      +   GLAA  IG   R
Sbjct: 1   MAVKKIIY--DQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++   +        P + INPKI+  S  +   +         +    R   ITV Y + 
Sbjct: 56  IIAFYI-----GSLPFMMINPKIVRKSGKYMTEEGCLSLSGQRQ--TVRYKEITVTYQNL 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           + +         +A  +QHE+DH +GIL 
Sbjct: 109 DFKEVTQDFSEFIAETIQHEVDHCDGILI 137


>gi|307705978|ref|ZP_07642803.1| polypeptide deformylase family protein [Streptococcus mitis SK564]
 gi|307620488|gb|EFN99599.1| polypeptide deformylase family protein [Streptococcus mitis SK564]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I V Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGPYETEEGCLSLVGVRP--TKRYETIKVAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|322816071|gb|EFZ24514.1| metalloprotease-like protein, putative [Trypanosoma cruzi]
          Length = 366

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P+V  P   L     P++     + +   +I+ +           L A QIG   ++  +
Sbjct: 72  PIVQLPARSLWCKQYPLDPAQVRSGEFAEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL 131

Query: 62  DLQDHAHRK----------------NPMVFINPKIITFSDD---FSVYQEGCLSIPDYRA 102
                                     P+     + +             E C S      
Sbjct: 132 FDGSVFINPVNLDLLEVEAAGTRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMH 191

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ++R A + +R +  +     +  + + A    HELDHL+G+LF   +  
Sbjct: 192 YIERPATVRIRAIGADGHPFEVTLEKMRARMALHELDHLSGVLFTRRIPD 241


>gi|313905668|ref|ZP_07839029.1| formylmethionine deformylase [Eubacterium cellulosolvens 6]
 gi|313469492|gb|EFR64833.1| formylmethionine deformylase [Eubacterium cellulosolvens 6]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           + K +V   DP  LR+ S P  K +     +I ++++ +       +G+AA  IGV  ++
Sbjct: 1   MVKQIVR--DPLFLRQKSEPATKED---KQVITDLMDTLRANQERCVGMAANMIGVRKQI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +            +NP I   S  +   +       D      R   I V Y+D +
Sbjct: 56  IVVAVGPFIVP-----MVNPVITRKSGKYETEEGCLS--LDGVRSCTRYKEIEVEYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +    +   A  +QHE+ H +G L 
Sbjct: 109 FKKKHGKFNDFTAQIIQHEIQHFSGELI 136


>gi|253751244|ref|YP_003024385.1| peptide deformylase [Streptococcus suis SC84]
 gi|253753145|ref|YP_003026285.1| peptide deformylase [Streptococcus suis P1/7]
 gi|253754968|ref|YP_003028108.1| peptide deformylase [Streptococcus suis BM407]
 gi|251815533|emb|CAZ51115.1| peptide deformylase [Streptococcus suis SC84]
 gi|251817432|emb|CAZ55172.1| peptide deformylase [Streptococcus suis BM407]
 gi|251819390|emb|CAR44821.1| peptide deformylase [Streptococcus suis P1/7]
 gi|319757521|gb|ADV69463.1| peptide deformylase [Streptococcus suis JS14]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P++     I  L++ S P  +++  +   + + L        +G+AA  IGV  R++
Sbjct: 1   MIQPIMK---DIFFLQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++             NP +I+ +  +   +       +      R   I V + D + 
Sbjct: 57  IVNMGFTNLV-----MYNPVLISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFFDASW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +   +      A  +QHELDHL GI+ 
Sbjct: 110 KKISLKLTDFQAQIVQHELDHLEGIII 136


>gi|154343115|ref|XP_001567503.1| polypeptide deformylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064835|emb|CAM42941.1| putative polypeptide deformylase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 271

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 32  IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFS 88
           + ++ ++  +   +  +A +      +++I            V                 
Sbjct: 82  LMDLKQLATNLHCLSFSAPKAHWDAAVLLIKSNPDEVEYEVWVNPSVPGYDDRNAVAPMY 141

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              E C+S     A V R   IT R  + + + ++   DG+ A CL HELDHL G    
Sbjct: 142 GMWENCISCGTATAWVVRPQRITCRGYNEHGREKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|110798606|ref|YP_695205.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168217422|ref|ZP_02643047.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
 gi|110673253|gb|ABG82240.1| polypeptide deformylase [Clostridium perfringens ATCC 13124]
 gi|182380515|gb|EDT77994.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + +P+V     +L   + S   E    + + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  +         +  +NP I+     +   +         +    R   I V Y+D 
Sbjct: 55  ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136


>gi|306831575|ref|ZP_07464733.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426360|gb|EFM29474.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + L V    + +G+AA  IGV  R ++
Sbjct: 1   MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRAII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++             NP ++  S  F   +             +R   I V ++D N  
Sbjct: 58  VNMGGADLV-----MFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQRIEVSFLDKNWN 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   GL A   QHELDHL GI+ 
Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGIII 136


>gi|322390160|ref|ZP_08063692.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
 gi|321143120|gb|EFX38566.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           +KK +V     +L   + S        +   L  ++ + + +   + +GLAA  IGV  R
Sbjct: 1   MKKNIVK---NVLFLGQKSEEAT---PEDRTLALDLQDTLNAHLLECVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            ++I + +           NP ++     +   +     +        R   +TV Y D 
Sbjct: 55  AIIIRMGNENLV-----MFNPVLLEKKKPYQTEEGCLSLVGSRP--TTRYEEMTVAYRDV 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + + I+  G  A   QHE+DHL G++ 
Sbjct: 108 NWKAKTIHLSGFPAQICQHEMDHLEGVII 136


>gi|319939828|ref|ZP_08014184.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
 gi|319811041|gb|EFW07356.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           + KP+V   D  +L++ ++P  K +  I     ++ + +       +G+AA  IGV  R+
Sbjct: 1   MIKPIVK--DMLVLQQKAQPASKEDVGIGQ---DLFDTLRANQDKCVGMAANMIGVQKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++          P++  NP +   S  +   +              R   ITV Y+D +
Sbjct: 56  IILMY-----DVIPVIMFNPILKRKSSPYRAEESCLSLAGSRL--TTRYKEITVEYLDQH 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q +      A   QHELDHL GIL 
Sbjct: 109 WRKQTLTLKDFPAQICQHELDHLEGILI 136


>gi|229818453|ref|ZP_04448734.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM
           20098]
 gi|229784323|gb|EEP20437.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM
           20098]
          Length = 141

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59
           +++P+     P+L + S       +D+  +  ++ +    +    +G+AA  IG   R+ 
Sbjct: 1   MQRPITTS-IPLLSQPSEEAHSTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGEHKRI- 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        +  NP+I      +   +       + R    R   I V YMD   
Sbjct: 58  -IAFVDEELGGRITLMFNPRITAQDGAYDTAEGCLSLNGERR--TLRYQRIEVDYMDRRW 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH +G++ 
Sbjct: 115 RERHATFTGFTAQIIQHEIDHCDGVII 141


>gi|328468001|gb|EGF39025.1| peptide deformylase [Lactobacillus helveticus MTCC 5463]
          Length = 137

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           M  K ++   D + L + S      N + +N   ++ +      +  +GLAA  IG   R
Sbjct: 1   MAVKKIIY--DQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAVGLAANMIGQSKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++   +        P + INPKI+  S  +   +         +    R   ITV Y + 
Sbjct: 56  IIAFYI-----GSLPFMMINPKIVRKSGKYMTEEGCLSLSGQRQ--TVRYKEITVTYQNL 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           + +         +A  +QHE+DH +GIL 
Sbjct: 109 DFKEVTQDFSEFIAETIQHEVDHCDGILI 137


>gi|168209867|ref|ZP_02635492.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|170712027|gb|EDT24209.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + +P+V     +L   + S   E    + + +ID++++ +       +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRVNLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  +         +  +NP I+     +   +         +    R   I V Y+D 
Sbjct: 55  ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136


>gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
 gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
          Length = 240

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 17/131 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-------------HAHRKNPMVFINPKII 81
           M   M +  G+GLAA Q+G+     VI+ +                        ++P + 
Sbjct: 67  MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDLLERRPLPLRALLDPVLE 126

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA----QHQIIYADGLLATCLQHE 137
                     EGCLS+  +++ V RS  + +R  +       +       G  A  LQHE
Sbjct: 127 PLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQHE 186

Query: 138 LDHLNGILFID 148
            DHL G L  D
Sbjct: 187 TDHLAGTLCHD 197


>gi|309805350|ref|ZP_07699400.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
 gi|308165350|gb|EFO67583.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
          Length = 95

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +       D +  V R+  + ++Y   + + + I   G  A    HE+DHLNG LF D +
Sbjct: 20  EGCLSVDKDIQGYVPRAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRI 79

Query: 151 SR 152
            +
Sbjct: 80  DK 81


>gi|225870619|ref|YP_002746566.1| peptide deformylase [Streptococcus equi subsp. equi 4047]
 gi|225700023|emb|CAW94040.1| peptide deformylase [Streptococcus equi subsp. equi 4047]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L++ ++P  K +  I   + + L   Y    +GLAA  IG   R+++
Sbjct: 1   MIKKIVK--DTFFLQQKAQPATKKDLWIGQDLQDTLA-YYRDSCLGLAANMIGENKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP +I   + F   +     I   +   KR   I V Y+D +  
Sbjct: 58  ISM-----GFVDLVMFNPVLIAKREAFEAEESCLSLIGQRK--TKRYQEIKVDYLDAHWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHELDHL GIL 
Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGILI 136


>gi|324993584|gb|EGC25504.1| peptide deformylase [Streptococcus sanguinis SK405]
 gi|324995104|gb|EGC27016.1| peptide deformylase [Streptococcus sanguinis SK678]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + +     + IGLAA  IGV  R ++           P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRAIIFLY-----GLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +             +R   ITV Y+D N Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GIL 
Sbjct: 127 ELDHLEGILI 136


>gi|289168375|ref|YP_003446644.1| predicted polypeptide deformylase [Streptococcus mitis B6]
 gi|288907942|emb|CBJ22782.1| predicted polypeptide deformylase [Streptococcus mitis B6]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 19/150 (12%)

Query: 2   VKKPLVI---FPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLY 56
           ++K +V    F    L +VS+P  + +   + L  ++ +         +GLAA  IGV  
Sbjct: 1   MEKKIVKDLLF----LSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R+++ +         P+V  NP +++F   +   +             KR   I V Y D
Sbjct: 54  RVIIFN-----LGLVPVVMFNPVLLSFDGLYETEEGCLSLTGVRP--TKRYETIRVAYRD 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
              Q Q I   G  A   QHELDHL G + 
Sbjct: 107 SKWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|322392329|ref|ZP_08065790.1| peptide deformylase [Streptococcus peroris ATCC 700780]
 gi|321144864|gb|EFX40264.1| peptide deformylase [Streptococcus peroris ATCC 700780]
          Length = 141

 Score = 54.8 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L +VSRP  + +  +   + + L+       +GLAA  IGV  R+++ +         PM
Sbjct: 17  LSQVSRPASQEDLPLAKDLQDTLQANK-ETCVGLAANMIGVQKRVIIFN-----LGMIPM 70

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP + +F   +   +              R   ITV Y D + Q Q I   G  A  
Sbjct: 71  VMFNPVLQSFEGPYETEEGCLSLAGVRP--TTRYEKITVSYRDIHWQEQTITLTGFPAQI 128

Query: 134 LQHELDHLNGILF 146
            QHELDHL G + 
Sbjct: 129 CQHELDHLEGRII 141


>gi|160914591|ref|ZP_02076805.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991]
 gi|158433131|gb|EDP11420.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991]
          Length = 139

 Score = 54.8 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K ++   D   L+  S P  K +  I    D++L+ + +     +G+AA  IGV   +
Sbjct: 1   MIKDIMR--DELFLQMKSLPATKEDKGI---ADDLLDTLKANAMQCVGMAANMIGVQKCI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +    ++    +  ++     I T    + V +       +  A  KR   I V+Y D +
Sbjct: 56  IAFLNKE--SGQYEVMLNPVIIKTSGIAYRVMEGCLSLAGEREA--KRYPQIKVQYYDTD 111

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +I    G  A  +QHE+DH NGIL 
Sbjct: 112 MKLKIKSYKGFTAQIIQHEIDHCNGILI 139


>gi|168204531|ref|ZP_02630536.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170663898|gb|EDT16581.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + +P+V     IL   + S   E    + + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DILFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  +         +  +NP I+     +   +         +    R   I V Y+D 
Sbjct: 55  ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136


>gi|325663348|ref|ZP_08151798.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470802|gb|EGC74032.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + KP++     I  L + S P  K +  +  +L+D +         +G+AA  IGV  R+
Sbjct: 1   MVKPIMK---DIFFLGQRSDPATKADLQVGRDLMDTL--AANREGCVGMAANMIGVKKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++++         +V  NP ++     +   +         +    R   I V Y+D N
Sbjct: 56  IIVNM-----GFVDVVMFNPVLVRKESPYETEEGCLSLTGVRK--TTRYQTIEVEYLDMN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q +  DG  A   QHELDHL GIL 
Sbjct: 109 WKKQNLKLDGWTAQICQHELDHLEGILI 136


>gi|222152925|ref|YP_002562102.1| peptide deformylase [Streptococcus uberis 0140J]
 gi|222113738|emb|CAR41729.1| peptide deformylase [Streptococcus uberis 0140J]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + +V   DP  L++ S    K +   + +  ++L+    +  + +G+AA  IG   R+
Sbjct: 1   MIRDIVK--DPLFLQQKSALATKED---IKIGTDLLDTLAYHRENCLGMAANMIGESKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I +          + I+          S + E             R   I V Y+D +
Sbjct: 56  IIISMGFVDLVMFNPMIIS-------KKDSFHAEESCLSLSGSRKTTRYKEIKVDYLDHH 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              + +   GL A   QHELDHL GIL 
Sbjct: 109 WMKKSLTLTGLPAQVCQHELDHLEGILI 136


>gi|331266006|ref|YP_004325636.1| polypeptide deformylase, putative [Streptococcus oralis Uo5]
 gi|326682678|emb|CBZ00295.1| polypeptide deformylase, putative [Streptococcus oralis Uo5]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           ++K +V   D   L +VS+P  + +   + L  ++ +         +GLAA  IGV  R+
Sbjct: 1   MEKKIVR--DVLFLSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ +         P+V  NP ++++   +   +              R   ITV Y D  
Sbjct: 56  IIFN-----LGLVPIVMFNPILLSYEGPYETEEGCLSLTGVRP--TTRFETITVSYRDSK 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q Q I   G      QHELDHL G + 
Sbjct: 109 WQEQTITLTGFPVQICQHELDHLEGRII 136


>gi|74025884|ref|XP_829508.1| polypeptide deformylase [Trypanosoma brucei TREU927]
 gi|70834894|gb|EAN80396.1| polypeptide deformylase, putative [Trypanosoma brucei]
          Length = 260

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 9   FPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +P   L R +  +E          + + N+ ++      I  +A +      +V+I    
Sbjct: 45  YPHRSLTRPALRLERHQVNTPLFHSQLLNLNKMATDLQCISFSAPKGHWDAAIVLIKGHP 104

Query: 66  HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +                            E C+S     A V R   IT   +D     +
Sbjct: 105 NEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSITCSGLDEYGNEK 164

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
               DG+ A CL HELDHL+G   +D
Sbjct: 165 TEVLDGMRARCLMHELDHLSGRTILD 190


>gi|304385668|ref|ZP_07368012.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
 gi|304328172|gb|EFL95394.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++K +V   +  L + S P  + +    ++L+D +         +GLAA  IGV  +++ 
Sbjct: 1   MQKNIVRDQN-FLSQKSVPATRADLPTALDLVDTLAANADRA--VGLAANMIGVKKQIIA 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +         +  +NPK+   S  +   +       +      R   I V+Y D N +
Sbjct: 58  VSI-----GVMNIAMLNPKLTKKSHPYQAKEGCLSLTGERS--TTRYKEIEVQYQDLNFK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q  +  G +A  +QHE+DH  GIL 
Sbjct: 111 KQTQHFSGWIAEIIQHEIDHCAGILI 136


>gi|149184142|ref|ZP_01862470.1| peptide deformylase [Bacillus sp. SG-1]
 gi|148848148|gb|EDL62470.1| peptide deformylase [Bacillus sp. SG-1]
          Length = 86

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +            V R + +T++ MD +     I   GL +  +QHE+DHLNG++F DH+
Sbjct: 10  EGCLSVDRQVPGYVPRYSRVTIKGMDIDGNPVKIRLKGLPSIVMQHEIDHLNGVMFYDHI 69

Query: 151 S 151
            
Sbjct: 70  D 70


>gi|317499718|ref|ZP_07957976.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893024|gb|EFV15248.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + K ++   DP  L + S    K +     ++ ++L+ + +     +G+AA  IGV  ++
Sbjct: 1   MIKDIMK--DPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKKI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +            +    IT        +EGCLS+   R   KR   I V Y+D +
Sbjct: 56  IVVAVGPFQFA------MINPKITKKSGVFETEEGCLSLDGVR-PCKRYKEIEVDYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH  GI+ 
Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCKGIVI 136


>gi|324990225|gb|EGC22163.1| peptide deformylase [Streptococcus sanguinis SK353]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + +     + IGLAA  IGV  R+++           P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +             +R   ITV Y+D N Q + +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQRTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GIL 
Sbjct: 127 ELDHLEGILI 136


>gi|320546940|ref|ZP_08041241.1| peptide deformylase [Streptococcus equinus ATCC 9812]
 gi|320448342|gb|EFW89084.1| peptide deformylase [Streptococcus equinus ATCC 9812]
          Length = 136

 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    + +  +   + + L      + +G+AA  IGV  R ++
Sbjct: 1   MIKEIVK--DTFFLAQKSEEATEADLYLATDLQDTLNANR-ENCVGMAANMIGVKKRAII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         ++  NP +   S  F   +     +       +R   I V +MD N  
Sbjct: 58  VNM-----GLGDLIMFNPVMTNKSLPFDTEESCLSLVGSRS--TRRYQKIDVTFMDKNWN 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   GL A   QHELDHL GI+ 
Sbjct: 111 KQSLTLTGLPAQICQHELDHLEGIII 136


>gi|255974264|ref|ZP_05424850.1| peptide deformylase [Enterococcus faecalis T2]
 gi|255967136|gb|EET97758.1| peptide deformylase [Enterococcus faecalis T2]
          Length = 89

 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
          ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1  MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62 DLQDH 66
          ++ + 
Sbjct: 61 EIDEE 65


>gi|322821869|gb|EFZ28075.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 6/145 (4%)

Query: 9   FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +P   L R +  ++K         + + ++ ++      I  +A +      +V+I    
Sbjct: 45  YPHRSLTRPALRLDKTQVNTPLFQSQLLSLKKMASDLRCISFSAPKGHWDATVVLIKSHP 104

Query: 66  HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                   V     +    T         E C+S     A V R   +T    D     +
Sbjct: 105 DEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSVTCSGWDEYGNEK 164

Query: 123 IIYADGLLATCLQHELDHLNGILFI 147
                G+ A CL HELDHL+G   +
Sbjct: 165 TELLGGMRARCLMHELDHLHGKTIL 189


>gi|325978482|ref|YP_004288198.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178410|emb|CBZ48454.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 136

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + L V    + +G+AA  IGV  R ++
Sbjct: 1   MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRAII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP ++  S  F   +             +R   I V ++D N  
Sbjct: 58  VNM-----GVADLVMFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQRIEVSFLDKNWN 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   GL A   QHELDHL GI+ 
Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGIII 136


>gi|227530489|ref|ZP_03960538.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
 gi|227349594|gb|EEJ39885.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
          Length = 136

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPIL-RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP+    D IL ++ + P  + + ++   + + L   +  + IG+AA  I +   +++
Sbjct: 1   MIKPINH--DQILLQQRAIPATRQDLNVGIDLKDTLNAHH-AECIGMAANMISINKAIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             L         MV  NP+I    + +   +         +  V R   I V + D N  
Sbjct: 58  ASLGP-----INMVMYNPQITQKQEPYQTAEGCLS--LPGKRTVTRYRQIKVTFRDQNWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +    + A  +QHE+DHLNGIL 
Sbjct: 111 LQTLQLSDIAAEIIQHEIDHLNGILI 136


>gi|317057111|ref|YP_004105578.1| formylmethionine deformylase [Ruminococcus albus 7]
 gi|315449380|gb|ADU22944.1| formylmethionine deformylase [Ruminococcus albus 7]
          Length = 136

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   D I L++ S   +K + DI+  + + L+  +    +G+AA  IG   R+++
Sbjct: 1   MVREIVH--DVIFLKKKSIKADKNDVDIITDLRDTLKANH-DRCVGMAANMIGFNKRIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                       +V INP I+  +  +   +         +   KR   ITV Y D +  
Sbjct: 58  FT-----AGIMDIVMINPVIVKKAQPYETEEGCLSLTGVRK--TKRWEKITVEYQDTSFN 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            +     G +A  +QHE DHL GI+ 
Sbjct: 111 KKRGDFTGFVAQIIQHECDHLEGIII 136


>gi|270290078|ref|ZP_06196304.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|270281615|gb|EFA27447.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
          Length = 136

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++K +V   +  L + S P  + +    ++L+D +         +GLAA  IGV  +++ 
Sbjct: 1   MQKNIVRDQN-FLSQKSVPATRADLPTALDLVDTLAANADRA--VGLAANMIGVKKQIIA 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +         +  +NPK+   S  +   +       +      R   I V+Y D N +
Sbjct: 58  VSI-----GVMNIAMLNPKLTKKSHPYQAKEGCLSLAGERS--TTRYKEIEVQYQDLNFK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q  +  G +A  +QHE+DH  G+L 
Sbjct: 111 KQTQHFSGWIAEIIQHEIDHCAGVLI 136


>gi|18309742|ref|NP_561676.1| peptide deformylase [Clostridium perfringens str. 13]
 gi|168214353|ref|ZP_02639978.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|169344411|ref|ZP_02865380.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|169297331|gb|EDS79440.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170714200|gb|EDT26382.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
          Length = 136

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + +P+V     +L   + S   E    + + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  +         +  +NP I+     +   +         +    R   I V Y+D 
Sbjct: 55  ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136


>gi|288905492|ref|YP_003430714.1| polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|288732218|emb|CBI13783.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34]
          Length = 136

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + L V    + +G+AA  IGV  R+++
Sbjct: 1   MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP ++  S  F   +             +R   I V ++D N  
Sbjct: 58  VNM-----GVADLVMFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQKIEVSFLDKNWN 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   GL A   QHELDHL GI+ 
Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGIII 136


>gi|306829860|ref|ZP_07463047.1| peptide deformylase [Streptococcus mitis ATCC 6249]
 gi|304427871|gb|EFM30964.1| peptide deformylase [Streptococcus mitis ATCC 6249]
          Length = 136

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ +         +GLAA  IG   R+++ +         
Sbjct: 12  LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGEQKRVIIFN-----LGLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV  NP ++++   +   +              R   I V Y D   Q Q I   G  A
Sbjct: 64  PMVMFNPILLSYKGPYETEEGCLSLTGVRP--TTRYETIKVSYRDSKWQEQTITLTGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|295425019|ref|ZP_06817727.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
 gi|295065294|gb|EFG56194.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
          Length = 137

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDP-ILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++   D   L+R S+P  K + +I ++L D ++        +GLAA  IG   R+
Sbjct: 1   MAAQNIIH--DQMFLQRKSQPATKADLNIAIDLRDTLIAKRNLA--LGLAANMIGKDKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +         MV INP+II   + +   +       +     KR   I V +   N
Sbjct: 57  IAFYVGP-----LAMVMINPRIIDKEERYITKEGCLSLSGERS--TKRYKKIRVSFQTMN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +++    DGL +  +QHE+DH +GIL 
Sbjct: 110 FENRTQEFDGLTSEVIQHEIDHCDGILI 137


>gi|22537481|ref|NP_688332.1| peptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|22534360|gb|AAN00205.1|AE014253_3 polypeptide deformylase, putative [Streptococcus agalactiae
           2603V/R]
          Length = 136

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ E +++       +AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQETLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I+          +V  NP ++  SD +   +     +       +R   IT+ Y D N
Sbjct: 56  IIIN-----VGITNLVMFNPVVVAKSDPYETEESCLSLVGCRS--TQRYCHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|268608180|ref|ZP_06141907.1| peptide deformylase [Ruminococcus flavefaciens FD-1]
          Length = 137

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + + +V   DP +L R S P      + M+ + ++L+     S   +G+AA  IGV   +
Sbjct: 1   MVREIVR--DPLVLGRKSEP---AGKEDMHTVRDLLDTLAANSDRCVGMAANMIGVHKTI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V  +   A        INPKI   S D    +EGCLS+   R  V+R  FITV Y+D  
Sbjct: 56  LVAAVGGKAVA-----MINPKITDKSKDTYDTEEGCLSLDGVR-PVQRYKFITVEYLDHR 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +        A  +QHE+DH +G + 
Sbjct: 110 FKKKKQTFRDFEAQIIQHEIDHFSGRII 137


>gi|292557811|gb|ADE30812.1| Formylmethionine deformylase [Streptococcus suis GZ1]
          Length = 163

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P++     I  L++ S P  +++  +   + + L        +G+AA  IGV  R++
Sbjct: 28  MIQPIMK---DIFFLQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRII 83

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++             NP +I+ +  +   +       +      R   I V + D + 
Sbjct: 84  IVNMGFTNLV-----MYNPVLISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFFDASW 136

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +   +      A  +QHELDHL GI+ 
Sbjct: 137 KKISLKLTDFQAQIVQHELDHLEGIII 163


>gi|254520028|ref|ZP_05132084.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226913777|gb|EEH98978.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 136

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + +P+V     IL   + S    K +   + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DILFLGQKSEYATKAD---VAVIDDLVDTLRANLEQCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + D               +    D     E             R   I V Y+D 
Sbjct: 55  ILVFSIGDIIVPMV-------NPVIVKKDKVYEAEESCLSLSGFRKTMRYEAIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKKHKQTFTGFTAQVIQHEIDHFEGIII 136


>gi|253579091|ref|ZP_04856362.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850034|gb|EES77993.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA]
          Length = 136

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + K +V     I  L + S+P  K +  I   + + L+       +G+AA  IGV   ++
Sbjct: 1   MVKQIVR---DIFFLGQPSKPATKADIQIGKDLQDTLQANREW-CVGMAANMIGVRKNII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++         +V  NP I++  D +   +       D      R   I V Y D N 
Sbjct: 57  IVNM-----GFIDVVMFNPVIVSKHDMYETEEGCLS--LDGVRKTTRYQEIEVEYYDFNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q     G  A   QHE+DHL+G + 
Sbjct: 110 KKQRQKLSGWTAQICQHEIDHLSGKII 136


>gi|262283351|ref|ZP_06061117.1| peptide deformylase [Streptococcus sp. 2_1_36FAA]
 gi|262260842|gb|EEY79542.1| peptide deformylase [Streptococcus sp. 2_1_36FAA]
          Length = 136

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVV 60
            K ++      L++ S    K +   + L  ++ +       + +GLAA  IGV  R+++
Sbjct: 6   VKDIL-----FLQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                      P++  NP +   S  +   +     +        R   ITV Y+D N Q
Sbjct: 58  FMY-----GMVPIIMFNPVLRAKSGPYQTEEGCLSLVGSRS--TTRYQEITVDYLDRNWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I      A   QHELDHL GIL 
Sbjct: 111 PQTITLKDFPAQICQHELDHLEGILI 136


>gi|228477893|ref|ZP_04062507.1| polypeptide deformylase [Streptococcus salivarius SK126]
 gi|228250383|gb|EEK09623.1| polypeptide deformylase [Streptococcus salivarius SK126]
          Length = 136

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + LE       +G+AA  IGV  R+++
Sbjct: 1   MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CLGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP +++ S  F   +       +     KR   I V Y+D    
Sbjct: 58  VNI-----GFVNLVMFNPILVSKSSPFQTEESCLS--LEGSRPTKRYESIEVAYLDEQWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   G+ A  +QHELDHL GI+ 
Sbjct: 111 PKQLSFSGMPAQIIQHELDHLEGIII 136


>gi|182624168|ref|ZP_02951955.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|177910784|gb|EDT73144.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 136

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + +P+V     +L   + S   E    + + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  +         +  +NP I+     +   +         +    R   I V Y+D 
Sbjct: 55  ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTRFRK--TTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136


>gi|227893768|ref|ZP_04011573.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
 gi|227864413|gb|EEJ71834.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
          Length = 137

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           M  + ++   D   L + S      N   + + +++ +          GLAA  IG   R
Sbjct: 1   MTAQNIIH--DQLFLSQKS---TIANKGDLKIAEDLRDTLLANRNKAAGLAANMIGKSKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++   +        P + INP+II  S ++   +       D   + KR   ITV Y + 
Sbjct: 56  IIAFYVGP-----FPFLMINPQIIKKSGEYLAKEGCLS--LDGEREAKRYEKITVSYQNL 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G +A  +QHE+DH NGIL 
Sbjct: 109 NFEKETQSFSGFVAETIQHEVDHCNGILI 137


>gi|223932640|ref|ZP_03624640.1| formylmethionine deformylase [Streptococcus suis 89/1591]
 gi|330832215|ref|YP_004401040.1| peptide deformylase [Streptococcus suis ST3]
 gi|223898750|gb|EEF65111.1| formylmethionine deformylase [Streptococcus suis 89/1591]
 gi|329306438|gb|AEB80854.1| peptide deformylase [Streptococcus suis ST3]
          Length = 136

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P++     I  L++ S P  +++  +   + + L        +G+AA  IG+  R++
Sbjct: 1   MIQPIMK---DIFFLQQKSEPATQLDVQVGQDLQDTLSANAHA-CVGMAANMIGIKKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++             NP +I+ +  +   +       +      R   I V ++D + 
Sbjct: 57  IVNMGFTNLV-----MYNPVLISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFLDASW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +   +      A  +QHELDHL GI+ 
Sbjct: 110 KKISLKLTDFQAQIVQHELDHLEGIII 136


>gi|258513851|ref|YP_003190073.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777556|gb|ACV61450.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
          Length = 74

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 1  MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
          M  + ++ +  + ILR+ +R IEK  + I+  + NM E MY+ +  GLAA Q+ +L RLV
Sbjct: 1  MALRNIMNYQTNDILRKKTRTIEKFYNRILTSLKNMAETMYNANETGLAATQVAILRRLV 60

Query: 60 VI 61
          VI
Sbjct: 61 VI 62


>gi|227889181|ref|ZP_04006986.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|227850410|gb|EEJ60496.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
          Length = 137

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  K ++   D + L+  S P  K +      L D +L   Y     GLAA  IGV  R+
Sbjct: 1   MAVKLIIH--DELSLKFKSLPATKQDLGAATDLKDTLLANKYRA--AGLAANMIGVQKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + + +        P+V +NP I+   D +  Y+       +     +R   ITV+Y + N
Sbjct: 57  IALFIGP-----LPIVMLNPIIVAQDDKYLAYEGCLSLTGERP--TERYKNITVKYQNEN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +        A  +QHE+DH NGIL 
Sbjct: 110 LETRQQSFSDFTAEVIQHEVDHCNGILI 137


>gi|182684506|ref|YP_001836253.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|307127760|ref|YP_003879791.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|182629840|gb|ACB90788.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|306484822|gb|ADM91691.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B]
          Length = 136

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I + Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|169837912|ref|ZP_02871100.1| hypothetical protein cdivTM_12604 [candidate division TM7
           single-cell isolate TM7a]
          Length = 68

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + A   QHE DH+ GILF D LS L + ++ KK+  L +
Sbjct: 18  MWARAFQHEFDHIEGILFTDRLSILNKRLVAKKLDVLKK 56


>gi|302876100|ref|YP_003844733.1| formylmethionine deformylase [Clostridium cellulovorans 743B]
 gi|307686823|ref|ZP_07629269.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|302578957|gb|ADL52969.1| formylmethionine deformylase [Clostridium cellulovorans 743B]
          Length = 136

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + KP+V     +L   + S    K +   + ++D++++ + S   + +GLAA  IGV  R
Sbjct: 1   MIKPIVK---DVLFLGQKSEEATKND---IVVVDDLIDTLRSNLENCVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + D       +  INP I+     +   +     I   +   KR   I V Y+D 
Sbjct: 55  ILVFTIGD-----IIVPMINPVILKKEKLYETEESCLSLIGFRK--TKRYEMIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             + Q     G  A  +QHE+DH  GI+ 
Sbjct: 108 AFKKQKQVFTGFTAQIIQHEMDHFEGIII 136


>gi|307704401|ref|ZP_07641314.1| polypeptide deformylase family protein [Streptococcus mitis SK597]
 gi|307622045|gb|EFO01069.1| polypeptide deformylase family protein [Streptococcus mitis SK597]
          Length = 136

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+   + +   ++L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQSASQED---LHLARDLQDTLLANRETCVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I V Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGPYETEEGCLSLVGVRP--TKRYETIRVAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|76787753|ref|YP_329975.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76799363|ref|ZP_00781521.1| polypeptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77414517|ref|ZP_00790664.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|76562810|gb|ABA45394.1| polypeptide deformylase [Streptococcus agalactiae A909]
 gi|76585283|gb|EAO61883.1| polypeptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77159440|gb|EAO70604.1| polypeptide deformylase [Streptococcus agalactiae 515]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ + +++       +AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I+          +V  NP ++  SD +   +     +       +R   IT+ Y D N
Sbjct: 56  IIIN-----VGITNLVMFNPVLVAKSDPYETEESCLSLVGCRS--TQRYHHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|289676937|ref|ZP_06497827.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 79

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
          +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1  MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59 VVIDLQDHAHRKN 71
          V+   + +     
Sbjct: 61 VIFGFERNERYPQ 73


>gi|94994165|ref|YP_602263.1| peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|94547673|gb|ABF37719.1| Peptide deformylase [Streptococcus pyogenes MGAS10750]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++     +L++ ++  +K +  I   + + L   Y  + +G+AA  IG   R+V++
Sbjct: 1   MIREIITD-HFLLKQKAQVAKKEDLWIGQDLQDTLA-FYRQECLGMAANMIGEQKRIVIV 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP +++    +   +         +   +R   ITV Y+D N + 
Sbjct: 59  SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLNLTGLTAQICQHELDHLEGILI 136


>gi|322517336|ref|ZP_08070211.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
 gi|322124033|gb|EFX95586.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + LE       +G+AA  IGV  R+++
Sbjct: 1   MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP +++ S  F   +       +     +R   I V Y+D    
Sbjct: 58  VNI-----GFVNLVMFNPVLVSKSSPFQTEESCLS--LEGSRPTRRYESIEVAYLDEQWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   G+ A  +QHELDHL GI+ 
Sbjct: 111 LKQLNFSGMPAQIIQHELDHLEGIII 136


>gi|71419099|ref|XP_811066.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70875688|gb|EAN89215.1| metalloprotease-like protein, putative [Trypanosoma cruzi]
          Length = 366

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P+V  P   L     P++     +     +I+ +           L A QIG   ++  +
Sbjct: 72  PIVQLPARSLWCKQYPLDPAQVRSGGFAEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL 131

Query: 62  DLQDHAHRK----------------NPMVFINPKIITFSDD---FSVYQEGCLSIPDYRA 102
                                     P+     + +             E C S      
Sbjct: 132 FDGSVFINPVNLDLLEVEAAGSRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMH 191

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ++R A + +R +  +     +  + + A    HELDHL+G+LF   +  
Sbjct: 192 YIERPATVRIRAIGADGHPFEVTLEKMRARMALHELDHLSGVLFTRRIPD 241


>gi|291547509|emb|CBL20617.1| N-formylmethionyl-tRNA deformylase [Ruminococcus sp. SR1/5]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S P  K +  +   + + L+       +G+AA  IGV   +++
Sbjct: 1   MVKQIVR--DVFFLGQPSEPATKADIQVGKDLQDTLQANRER-CVGMAANMIGVKKNIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP I++  D +   +       D      R   I V Y D   +
Sbjct: 58  VNM-----GFINVVMFNPVIVSKRDMYETEEGCLS--LDGVRKTTRYQEIEVEYYDFKWK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q     G  A   QHE+DHL+G + 
Sbjct: 111 KQRQKLSGWTAQICQHEIDHLSGKII 136


>gi|25011446|ref|NP_735841.1| peptide deformylase [Streptococcus agalactiae NEM316]
 gi|77411175|ref|ZP_00787527.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|24412984|emb|CAD47063.1| unknown [Streptococcus agalactiae NEM316]
 gi|77162793|gb|EAO73752.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|319745273|gb|EFV97591.1| peptide deformylase [Streptococcus agalactiae ATCC 13813]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ + +++       +AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I+          +V  NP ++  SD +   +     +       +R   IT+ Y D N
Sbjct: 56  IIIN-----VGITNLVMFNPVLVAKSDPYETEESCLSLVGCRS--TQRYRHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|325679773|ref|ZP_08159347.1| peptide deformylase [Ruminococcus albus 8]
 gi|324108588|gb|EGC02830.1| peptide deformylase [Ruminococcus albus 8]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + K +V   D I L++ S    K ++  M +I ++ + + +       +AA  IG   R+
Sbjct: 1   MVKEIVK--DIIFLKKKSV---KADTKDMQIITDLQDTLKANHDRCVGMAANMIGYSKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++            +V INP I+  +  +   +         +   KR   ITV Y+D +
Sbjct: 56  IIFT-----AGIMDIVMINPVIVKKARPYETEEGCLSLTGVRK--TKRWEMITVEYLDTS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +     G +A  +QHE DHL+GI+ 
Sbjct: 109 FKKKRGDFTGFVAQIIQHECDHLDGIII 136


>gi|321399682|emb|CAC22626.2| putative peptide deformylase [Leishmania major strain Friedlin]
          Length = 501

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 26/170 (15%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++  P   L  R+ +    ++   +   LI  + E  +      ++A Q G   ++  +
Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---------------------EGCLSIPDY 100
              D++   NP+          +    +                       E C S    
Sbjct: 274 F--DNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFL 331

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              ++R   + +R +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 332 LHYIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381


>gi|76363764|ref|XP_888591.1| hypothetical protein [Leishmania major strain Friedlin]
          Length = 501

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 26/170 (15%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++  P   L  R+ +    ++   +   LI  + E  +      ++A Q G   ++  +
Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---------------------EGCLSIPDY 100
              D++   NP+          +    +                       E C S    
Sbjct: 274 F--DNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFL 331

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              ++R   + +R +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 332 LHYIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381


>gi|153811559|ref|ZP_01964227.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174]
 gi|149832300|gb|EDM87385.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S P  K +  +   + + L        +G+AA  IGV   +++
Sbjct: 1   MVKQIVR--DVFFLGQPSEPATKADIQVGKDLQDTLRANRER-CVGMAANMIGVKKNIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP I++  D +   +       D      R   I V Y D N +
Sbjct: 58  VNM-----GFIDVVMFNPVIVSKHDMYETEEGCLS--LDGVRKTTRYQEIEVEYYDFNWK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q     G  A   QHE+DHL+G + 
Sbjct: 111 KQRQKLSGWTAQICQHEIDHLSGKII 136


>gi|15858848|gb|AAK13239.1| peptide deformylase-like protein DefA [Streptococcus pneumoniae]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANIIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I + Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|77406283|ref|ZP_00783349.1| polypeptide deformylase [Streptococcus agalactiae H36B]
 gi|77175095|gb|EAO77898.1| polypeptide deformylase [Streptococcus agalactiae H36B]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ + +++       +AA  IG   R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSXKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I      +     + +   ++    D    +E CLS+   R   +R   IT+ Y D N
Sbjct: 56  III------NVGITNLVMXNPVLVAKSDPYETEESCLSLVGCR-STQRYHHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|139438029|ref|ZP_01771582.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC
           25986]
 gi|133776226|gb|EBA40046.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC
           25986]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP++   +  LR  S      ++    +L+D + E  +  + +GLAA  IGV  R++ 
Sbjct: 1   MIKPIMKS-EFFLRLPSEDAGPDDAVTGQDLLDTLHE--HEHECVGLAANMIGVRKRIIC 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   + A         NP+I+   + +   +     I +      R   I V Y+D N  
Sbjct: 58  VKDGNRALL-----MYNPQILEQVNAYQTSEGCLSLIGERP--CTRYRRIKVEYLDENFV 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
           H+I    G  A  +QHE+DH NGI+ 
Sbjct: 111 HRIKNFSGYTAEVIQHEIDHCNGIVI 136


>gi|71422988|ref|XP_812306.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70877072|gb|EAN90455.1| metalloprotease-like protein, putative [Trypanosoma cruzi]
          Length = 366

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P+V  P   L     P++     +     +I+ +           L A QIG   ++  +
Sbjct: 72  PIVQLPARSLWCKQYPLDPEQVRSGGFAEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL 131

Query: 62  DLQDHAHRK----------------NPMVFINPKIITFSDD---FSVYQEGCLSIPDYRA 102
                                     P+     + +             E C S      
Sbjct: 132 FDGSVFINPVNLDLLELEAAGSRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMH 191

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ++R A + +R +  +     +  + + A    HELDHL G+LF   +  
Sbjct: 192 YIERPATVRIRAIGADGHPFEVTLEKMRARMALHELDHLGGVLFTRRIPD 241


>gi|225026504|ref|ZP_03715696.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353]
 gi|224956192|gb|EEG37401.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 14  LRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L++ + P  K +   + +L+D +      T  +G+AA  IGV  R++ +++         
Sbjct: 12  LKKKAVPATKDDMPVVQDLLDTLKA--NETGCVGMAANMIGVNKRIIAVNM-----GFAN 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  +NP I++  + +   +         +    R   I V Y D + + Q     G +A 
Sbjct: 65  IAMLNPVIVSKKEPYEAEEGCLSLKGVRK--TTRYQEIEVEYEDIHFKKQHQKYKGWVAQ 122

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH  GI+ 
Sbjct: 123 IIQHEVDHCEGIII 136


>gi|327473594|gb|EGF19014.1| peptide deformylase [Streptococcus sanguinis SK408]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + +     + IGLAA  IGV  R+++           P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIFLY-----GLVPIVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +     +       +R   ITV Y+D N Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQTEEGCLSLVGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|312864304|ref|ZP_07724538.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|311100305|gb|EFQ58514.1| peptide deformylase [Streptococcus vestibularis F0396]
          Length = 136

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + LE       +G+AA  IGV  R+++
Sbjct: 1   MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP +++ S  F   +       +     +R   I V Y+D    
Sbjct: 58  VNI-----GFVNLVMFNPVLVSKSSLFQTEESCLS--LEGSRPTRRYESIEVAYLDEQWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   G+ A  +QHELDHL GI+ 
Sbjct: 111 LKQLNFSGMPAQIIQHELDHLEGIII 136


>gi|58336410|ref|YP_192995.1| peptide deformylase [Lactobacillus acidophilus NCFM]
 gi|58253727|gb|AAV41964.1| polypeptide deformylase [Lactobacillus acidophilus NCFM]
          Length = 137

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           M  K ++   D   L + S      N+  M +  ++ +          GLAA  IG   R
Sbjct: 1   MAVKNIIH--DQLFLMQKS---TLANAKDMQVAVDLRDTLLANRNKAAGLAANMIGEAKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++   +        PMV  NPKII   +++   +       +    VKR   ITV+Y + 
Sbjct: 56  IIAFYI-----VGMPMVMFNPKIIQKGNEYLATEGCLSLNGERP--VKRYEHITVKYQNI 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +++     G +A  +QHE+DH +G + 
Sbjct: 109 NLEYETQEFSGFVAETIQHEIDHCDGKII 137


>gi|295106023|emb|CBL03566.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 139

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 8/145 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60
           + K LV   + IL   S+P E   ++   +  ++L+      +   LAA QIGV   ++V
Sbjct: 1   MIKELVTD-EAIL---SQPCETATAEDAVVAQDLLDTLASLDEAACLAANQIGVAKAVIV 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
              ++          +   +  +            S       VK      V     + +
Sbjct: 57  YHDENEQPHVMYNPVLKQALGAYKTVEGCLTLESESKVTRYERVKVVYDELVDGALVSRK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
                  G  A  +QH +DH  G L
Sbjct: 117 ---RDFTGWTAELIQHMIDHCKGKL 138


>gi|229815989|ref|ZP_04446311.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM
           13280]
 gi|229808448|gb|EEP44228.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM
           13280]
          Length = 153

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K LV   + IL     P    +++I  +L+D +L +  +     LAA QIGV   +  
Sbjct: 15  MIKELVKD-EAILSTPCEPATAADAEIAQDLVDTLLSIEDAA---CLAANQIGVTKAICA 70

Query: 61  IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +       NP V          +     +         +  V     +   +    
Sbjct: 71  LADDEGNTLVMYNPKVLFGMGAFKAEESCLTREGSVRVTRFVKIKVAYDELVDGEF---- 126

Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145
            + +        A  +QH  DH  G L
Sbjct: 127 -KPRKRDFVEWPAELIQHMCDHCQGKL 152


>gi|328945770|gb|EGG39921.1| peptide deformylase [Streptococcus sanguinis SK1087]
          Length = 136

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L++ S    + +  +   + + L+     + +GLAA  IGV  R+++           P+
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQTNR-ENCLGLAANMIGVRKRVIIFLY-----GLVPV 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +   S  +   +             +R   ITV Y+D N Q Q +   GL A  
Sbjct: 66  VMFNPVLRYKSGPYQTEEGCLSLTGSRL--TQRYQEITVDYLDKNWQQQTMTLKGLPAQI 123

Query: 134 LQHELDHLNGILF 146
            QHELDHL GI+ 
Sbjct: 124 CQHELDHLEGIII 136


>gi|291523053|emb|CBK81346.1| N-formylmethionyl-tRNA deformylase [Coprococcus catus GD/7]
          Length = 136

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + + +      I  L + S P  + +      + + L+     + +G+AA  IG+   ++
Sbjct: 1   MVRKITK---DIFFLGQKSEPATEADIQTGRDLQDTLKAHR-AECVGMAANMIGIKKNVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++         +V  NP ++  S  +   +         +    R   I V Y D + 
Sbjct: 57  IVNM-----GIVDLVMFNPVLLKKSGPYETEEGCLSLTGVRK--TTRYREIEVEYRDMSW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             +     G  A   QHE+DHLNGI+ 
Sbjct: 110 TVRRQKLSGWTAQICQHEMDHLNGIII 136


>gi|171741144|ref|ZP_02916951.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC
           27678]
 gi|283455486|ref|YP_003360050.1| peptide deformylase [Bifidobacterium dentium Bd1]
 gi|306823442|ref|ZP_07456817.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309802744|ref|ZP_07696848.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|171276758|gb|EDT44419.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC
           27678]
 gi|283102120|gb|ADB09226.1| fms Peptide deformylase [Bifidobacterium dentium Bd1]
 gi|304553149|gb|EFM41061.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308220808|gb|EFO77116.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 141

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59
           +++ ++    P L + SR  +  + D   +  ++ + + +       +AA  IGV  R+ 
Sbjct: 1   MQREIMTS-IPFLEQPSRDAQNTDEDF-AVAQDLKDTLDAHRNSCVGMAANMIGVSKRI- 57

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I   D        +  NP+I      F   +              R   I V Y D   
Sbjct: 58  -IAFVDEDFGGRIFIMFNPEITARDGAFDTSEGCLS--LQGERHTVRHQRIEVTYFDRKF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH  GI+ 
Sbjct: 115 RERHAAFTGFTAQIIQHEVDHCAGIII 141


>gi|56808912|ref|ZP_00366621.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes
           M49 591]
 gi|209559224|ref|YP_002285696.1| peptide deformylase [Streptococcus pyogenes NZ131]
 gi|209540425|gb|ACI61001.1| Peptide deformylase [Streptococcus pyogenes NZ131]
          Length = 136

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++     +L++ ++  +K +  I   + + L   Y  +  G+AA  IG   R+V++
Sbjct: 1   MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTLA-FYRQECFGMAANMIGEQKRIVIV 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP +++    +   +         +   +R   ITV Y+D N + 
Sbjct: 59  SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLSLTGLTAQICQHELDHLEGILI 136


>gi|196019297|ref|XP_002118957.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens]
 gi|190577546|gb|EDV18557.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens]
          Length = 395

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 5/141 (3%)

Query: 16  RVSRPIEKINSDI--MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           +++R + KI  +     LI    EV+   +        +        ++ +   +  N +
Sbjct: 18  KITRKVPKIKEENGKKQLIGIEEEVVKDNNTSPDL---VIERKPYFFLNPKIKLNHNNEI 74

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V     +    +       G  ++              +                  + C
Sbjct: 75  VLPEGCLSVPMESIFKEYNGNSNVKRPEVIEIEYINENLEKEIMKIDGSKDDYWKWFSRC 134

Query: 134 LQHELDHLNGILFIDHLSRLK 154
            QHE DHL+G+LF+D L + K
Sbjct: 135 AQHENDHLDGVLFVDRLEKEK 155


>gi|146076416|ref|XP_001462921.1| metalloprotease-like protein [Leishmania infantum]
 gi|134067002|emb|CAM65107.1| metalloprotease-like protein [Leishmania infantum JPCM5]
 gi|322496349|emb|CBZ31420.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 393

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++  P   L  R+ +    ++   +   L+  + E  +      ++A Q G   ++  +
Sbjct: 106 PIIQLPARSLWCRQYALDARRVAQGEYAGLVSQVREARHYYQYPSMSAPQTGWNVQMFTL 165

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVY-------------------QEGCLSIPDYRA 102
                      +     +        S                      E C S      
Sbjct: 166 FDNSVFINPVNLDEEAWRAEAAQQGMSWVAFEEEKMRELRTEGLTGFAWEPCASSGFLLH 225

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++R   + VR +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 226 YIERPLTVRVRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 273


>gi|239621615|ref|ZP_04664646.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515490|gb|EEQ55357.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 128

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           R  S   E        +I+++++      +  +G+AA  IGV  R+  I   D       
Sbjct: 2   RTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI--IVFVDEDLGGRI 56

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            V +NP I      F   +       + R    R   I V Y D   + +     G  A 
Sbjct: 57  TVMLNPVITASDGAFDTQEGCLSLTGERR--TLRYRRIEVNYEDRRFRARHATFTGWTAQ 114

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH NGI+ 
Sbjct: 115 IIQHEVDHCNGIII 128


>gi|328955181|ref|YP_004372514.1| formylmethionine deformylase [Coriobacterium glomerans PW2]
 gi|328455505|gb|AEB06699.1| formylmethionine deformylase [Coriobacterium glomerans PW2]
          Length = 139

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 8/145 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60
           + K LV   D  L   S+P +   ++   L  ++L+          LAA QIG L     
Sbjct: 1   MIKELVR--DQALL--SQPAKPATAEDAALAKDLLDTLASLEHAGCLAANQIGALKA--- 53

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +      +  ++F    +          +    S P       +         D   +
Sbjct: 54  ICVYSDERNEPHVMFNPRLLFGLGASKMREECLTKSEPVTVTRYAKVKIQFDELADGALK 113

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            +     G  A  +QH +DH  G L
Sbjct: 114 TRKRDFTGYTAQMIQHMIDHCRGRL 138


>gi|327488979|gb|EGF20775.1| peptide deformylase [Streptococcus sanguinis SK1058]
          Length = 136

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + +     + IGLAA  IGV  R+++           P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +     +       +R   IT+ Y+D + Q Q I   GL A   QH
Sbjct: 69  NPVLRSKSGPYQTEESCLSLVGSRP--TQRYQEITIDYLDKHWQQQTITLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|306833720|ref|ZP_07466847.1| peptide deformylase [Streptococcus bovis ATCC 700338]
 gi|304424490|gb|EFM27629.1| peptide deformylase [Streptococcus bovis ATCC 700338]
          Length = 136

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + L V    + +G+AA  IGV  R ++
Sbjct: 1   MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRAII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP ++  S  F   +             +R   I V ++D N  
Sbjct: 58  VNM-----GVADLVMFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQKIEVAFLDKNWS 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   GL A   QHELDHL G++ 
Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGVII 136


>gi|150018336|ref|YP_001310590.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|6014951|sp|O08450|DEF_CLOB8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2208948|emb|CAB09662.1| formylmethionine deformylase [Clostridium beijerinckii]
 gi|149904801|gb|ABR35634.1| formylmethionine deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 136

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57
           + KP+V     IL   + S    K +   M +ID++++ + +     +GLAA  IGV  R
Sbjct: 1   MIKPIVK---DILFLGQKSEEATKND---MVVIDDLIDTLRANLEHCVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V            +  INP I+     +   +     I   +   KR   I V Y+D 
Sbjct: 55  ILVFT-----VGNLIVPMINPVILKKEKPYETEESCLSLIGFRK--TKRYETIEVTYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N   +    +G  A  +QHE+DH  GI+ 
Sbjct: 108 NFNKKKQVFNGFTAQIIQHEMDHFEGIII 136


>gi|163784804|ref|ZP_02179594.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879931|gb|EDP73645.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 108

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
          M K  ++ +PD  L+ VS+ +     +    ++ +   MY++  G+G+AA Q+    R +
Sbjct: 1  MKKLKILTYPDERLKVVSKEVIDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNKHIRTI 60

Query: 60 VIDLQDHAHRKNP 72
          ++D   + H+KN 
Sbjct: 61 IVDASHYKHKKNK 73


>gi|19745939|ref|NP_607075.1| peptide deformylase [Streptococcus pyogenes MGAS8232]
 gi|19748096|gb|AAL97574.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232]
          Length = 136

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++     +L++ ++  +K +  I   + + L V Y  + +G+AA  IG   R+V++
Sbjct: 1   MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTL-VFYRQECLGMAANMIGEQKRIVIV 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP +++    +   +         +   +R   ITV Y+D N + 
Sbjct: 59  SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLSLTGLTAQICQHELDHLEGILI 136


>gi|15674896|ref|NP_269070.1| peptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21910126|ref|NP_664394.1| peptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28896175|ref|NP_802525.1| peptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50914040|ref|YP_060012.1| peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71903322|ref|YP_280125.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71910490|ref|YP_282040.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94990244|ref|YP_598344.1| peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|139473964|ref|YP_001128680.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|306827532|ref|ZP_07460815.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
 gi|13622035|gb|AAK33791.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21904318|gb|AAM79197.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50903114|gb|AAT86829.1| Peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71802417|gb|AAX71770.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71853272|gb|AAZ51295.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94543752|gb|ABF33800.1| Peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|134272211|emb|CAM30457.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|304430330|gb|EFM33356.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
          Length = 136

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++     +L++ ++  +K +  I   + + L   Y  + +G+AA  IG   R+V++
Sbjct: 1   MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTLA-FYRQECLGMAANMIGEQKRIVIV 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP +++    +   +         +   +R   ITV Y+D N + 
Sbjct: 59  SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLSLTGLTAQICQHELDHLEGILI 136


>gi|46190479|ref|ZP_00206479.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
          Length = 128

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           R  S   E        +I+++++      +  +G+AA  IGV  R+  I   D       
Sbjct: 2   RTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI--IVFVDEDLGGRI 56

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            V +NP I      F   +       + R    R   +        A+H      G  A 
Sbjct: 57  TVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYENRRFRARHATFA--GWTAQ 114

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH NGI+ 
Sbjct: 115 IIQHEVDHCNGIII 128


>gi|171778277|ref|ZP_02919483.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282977|gb|EDT48401.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 136

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S+   K +  +   + + L      + IG+AA  IGV  R+++
Sbjct: 1   MIKEIVK--DTFFLAQKSQEATKEDLYLAQDLQDTLNANR-DNCIGMAANIIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP +   S  F   +     +       +R   I V +MD N  
Sbjct: 58  VNM-----GLADLVMFNPVMTNKSLPFDTEESCLSLLGSRP--TRRYQKIDVTFMDKNWN 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   GL A   QHELDHL GI+ 
Sbjct: 111 KQSLTLTGLAAQICQHELDHLEGIII 136


>gi|255633238|gb|ACU16975.1| unknown [Glycine max]
          Length = 125

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44
             +V +PDP LR  ++ I   +  +  L+  M +VMY  DG
Sbjct: 75  LKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKADG 115


>gi|94988363|ref|YP_596464.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94992245|ref|YP_600344.1| peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94541871|gb|ABF31920.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94545753|gb|ABF35800.1| Peptide deformylase [Streptococcus pyogenes MGAS2096]
          Length = 136

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++     +L++ ++  +K +  I   + + L   Y  + +G+AA  IG   R+V++
Sbjct: 1   MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTLA-FYRQECLGMAANMIGEQKRIVIV 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP +++    +   +         +   +R   ITV Y+D N + 
Sbjct: 59  SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLNLTGLTAQICQHELDHLEGILI 136


>gi|116627328|ref|YP_819947.1| peptide deformylase [Streptococcus thermophilus LMD-9]
 gi|116100605|gb|ABJ65751.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus
           LMD-9]
 gi|312277834|gb|ADQ62491.1| Peptide deformylase [Streptococcus thermophilus ND03]
          Length = 136

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + LE       +G+AA  IGV  R+++
Sbjct: 1   MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++          V ++          S   E      +     +R   I V Y+D    
Sbjct: 58  VNIGFVNLVMFNPVLVS-------KSSSFQTEESCLSLEGSRPTRRYESIEVAYLDERWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   G+ +  +QHELDHL G++ 
Sbjct: 111 PKQLSFSGMPSQIIQHELDHLEGVII 136


>gi|34101051|gb|AAQ57593.1| putative peptide deformylase [Trypanosoma brucei]
          Length = 366

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               E C S       ++R + + VR +  +     +  D + A    HELDHLNGILF 
Sbjct: 174 CFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILFT 233

Query: 148 DHLSR 152
             +  
Sbjct: 234 RRIPD 238


>gi|160895157|ref|ZP_02075930.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50]
 gi|156863191|gb|EDO56622.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50]
          Length = 144

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + KP+V     IL   + S P  +++ +++N + + L        +G+ A  IG    ++
Sbjct: 9   MVKPIVK---DILFLGQKSVPATQLDMNVVNDLRDTLAANRER-CVGMEANMIGYKKNMI 64

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           M+ INP I +    +   +       + +    R   I V + D   
Sbjct: 65  IVSAGP-----VDMIMINPVICSKIGRYETEEGCLS--LEGKRKTTRYKKIEVEFQDAGF 117

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             + +  +G +A  +QHE+DH NGI+ 
Sbjct: 118 VKRKMAFEGFVAQIIQHEVDHCNGIVI 144


>gi|291519179|emb|CBK74400.1| N-formylmethionyl-tRNA deformylase [Butyrivibrio fibrisolvens 16/4]
          Length = 136

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           + K +V   D I L++ S P  + ++    +I ++++ +       +G+AA  IGV  ++
Sbjct: 1   MVKQIVK--DQIFLQQKSEPATEADA---QVIVDLMDTLKANIDRCVGMAANMIGVKKQI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+          P +F     +          E      D      R   I V Y+D N
Sbjct: 56  IVV-------AAGPFIFPMVNPVITKKSGKYETEESCLSLDGVRPCVRYDEIEVDYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q +     G  A  +QHE+ H +G L 
Sbjct: 109 FQPKHGKYSGFTAQIIQHEIQHFSGELI 136


>gi|322488070|emb|CBZ23315.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 401

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 22/168 (13%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++  P   L  R+ +    ++   +   LI  + E  +      ++A Q G   ++  +
Sbjct: 114 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVKEARHYYQYPSMSAPQTGWNVQMFTL 173

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVY-------------------QEGCLSIPDYRA 102
                      +  +  +        S                      E C S      
Sbjct: 174 FDNSVFINPVNLDEVAWRAEAAQQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 233

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++R   + VR +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 234 YIERPLTVRVRALDEHGKAFTVTLDKMRARMSLHELDHLQGVLFTRRV 281


>gi|325696895|gb|EGD38782.1| peptide deformylase [Streptococcus sanguinis SK160]
          Length = 136

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 27  DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + + L  ++   +     + +GLAA  IGV  R+++           P+V  NP + + S
Sbjct: 22  EDLYLAQDLQNTLQANRENCLGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLRSKS 76

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             +   +             +R   ITV Y+D N Q Q +   GL A   QHELDHL GI
Sbjct: 77  GPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGI 134

Query: 145 LF 146
           L 
Sbjct: 135 LI 136


>gi|71745056|ref|XP_827158.1| metalloprotease-like protein [Trypanosoma brucei TREU927]
 gi|70831323|gb|EAN76828.1| metalloprotease-like protein [Trypanosoma brucei]
          Length = 366

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               E C S       ++R + + VR +  +     +  D + A    HELDHLNGILF 
Sbjct: 174 CFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILFT 233

Query: 148 DHLSR 152
             +  
Sbjct: 234 RRIPD 238


>gi|325688025|gb|EGD30044.1| peptide deformylase [Streptococcus sanguinis SK72]
 gi|327469220|gb|EGF14692.1| peptide deformylase [Streptococcus sanguinis SK330]
          Length = 136

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + +     + IGLAA  IGV  R+++           P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +     +       +R   IT+ Y+D + Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQTEESCLSLVGSRP--TQRYQEITIDYLDKHWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|164687438|ref|ZP_02211466.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM
           16795]
 gi|164603212|gb|EDQ96677.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM
           16795]
          Length = 137

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           + + +V   D   L + S P    +    +++ ++++ + +     +GLAA  IG   R+
Sbjct: 1   MIRQIVK--DVLFLEQKSEPATIQD---KSIVTDLVDTLKANLDGCVGLAANMIGFKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V  +                 +    +     E      +      R   I V+++D N
Sbjct: 56  LVFTVGAGMIVPM------INPVILKKEKPYLTEESCLSLEGFRQTTRYETIEVKFLDAN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +     G +A  +QHE+DH  GI+ 
Sbjct: 110 FKEKTQVFTGFVAQIIQHEMDHFEGIII 137


>gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
 gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
          Length = 157

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 3   KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           K  +V   DP+L   +R +   E  +  + N I  +++ M     +GLAA QIGV  +++
Sbjct: 47  KLEIVQAGDPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQIGVPLQII 106

Query: 60  VIDLQDHAHRK 70
           V++        
Sbjct: 107 VLEDTAEYISY 117


>gi|261331378|emb|CBH14372.1| metalloprotease-like protein [Trypanosoma brucei gambiense DAL972]
          Length = 366

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               E C S       ++R + + VR +  +     +  D + A    HELDHLNGILF 
Sbjct: 174 CFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILFT 233

Query: 148 DHLSR 152
             +  
Sbjct: 234 RRIPD 238


>gi|331083358|ref|ZP_08332471.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404439|gb|EGG83984.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 14  LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L + S    K +  I  +L+D +         +G+AA  IGV  R++++++         
Sbjct: 12  LGQKSELATKADLQIGRDLMDTL--AANREGCVGMAANMIGVKKRVIIVNM-----GFVD 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V  NP ++     +   +              R   I V Y+D N + Q +  DG +A 
Sbjct: 65  VVMFNPVLVKKELPYETEEGCLS--LPGVRKTTRYQTIEVEYLDMNWKKQNLKLDGWIAQ 122

Query: 133 CLQHELDHLNGILF 146
             QHELDHL GIL 
Sbjct: 123 ICQHELDHLEGILI 136


>gi|295099860|emb|CBK88949.1| N-formylmethionyl-tRNA deformylase [Eubacterium cylindroides T2-87]
          Length = 136

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   D  IL R+S    K +  I   + + LE    +   G+AA  IG   R++ 
Sbjct: 1   MVRDIVK--DTFILSRISVLANKDDLSIAQDLIDTLEAHKVS-CAGMAANMIGFHKRIIA 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
              +           +NP+II  S  +S  +             KR   I VRY+D   +
Sbjct: 58  FQDEGKIVV-----MLNPEIIKKSQIYSAKEGCLSLSGQRE--TKRYRSIKVRYLDMQMK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            +I       A  +QHE+DH +GIL 
Sbjct: 111 IKIKTFKDFTAQVIQHEIDHCDGILI 136


>gi|315037295|ref|YP_004030863.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|325955774|ref|YP_004286384.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|312275428|gb|ADQ58068.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|325332339|gb|ADZ06247.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|327182600|gb|AEA31047.1| peptide deformylase [Lactobacillus amylovorus GRL 1118]
          Length = 137

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           M  + ++   D   L + S      N   + + +++ +         +GLAA  IG   R
Sbjct: 1   MTAQNIIH--DQLFLSQKS---TSANRADLKVAEDLRDTLLANRDKAVGLAANMIGKNKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++            P+V +NP+I   S ++   +       + +   KR   ITV Y D 
Sbjct: 56  IIAFY-----VGLLPLVMLNPQITKKSGEYLTEEGCLSLSGERK--TKRYRTITVTYQDM 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N   +       +A  +QHE+DH  GIL 
Sbjct: 109 NLNTKTQEFTDFIAEVIQHEVDHCEGILI 137


>gi|293402350|ref|ZP_06646487.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304197|gb|EFE45449.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 139

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ S P  + +  +     N+LE + + +     +AA  IGV  R++     D      
Sbjct: 12  LQKTSEPATEKDLWV---AKNLLETLQAHEDRCVGMAANMIGVFKRIIAFVDIDTGS--- 65

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
               +    I  +   +   +            +R   I VRY D +   +I       A
Sbjct: 66  -HWVMLNPEIIKTSKETYLAQEQCLSISGIRQTRRYRRIKVRYQDEHMNIKIKTFHDKTA 124

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGIL 
Sbjct: 125 QIIQHEIDHCNGILI 139


>gi|225859308|ref|YP_002740818.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|303255336|ref|ZP_07341406.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|303260177|ref|ZP_07346149.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|303262567|ref|ZP_07348508.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264969|ref|ZP_07350884.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|303266432|ref|ZP_07352320.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|303269392|ref|ZP_07355162.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|225720965|gb|ACO16819.1| polypeptide deformylase [Streptococcus pneumoniae 70585]
 gi|301794560|emb|CBW37004.1| peptide deformylase [Streptococcus pneumoniae INV104]
 gi|301802269|emb|CBW35021.1| peptide deformylase [Streptococcus pneumoniae INV200]
 gi|302597704|gb|EFL64780.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|302636284|gb|EFL66778.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|302638674|gb|EFL69137.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|302641060|gb|EFL71437.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|302644010|gb|EFL74269.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|302645488|gb|EFL75720.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|332073889|gb|EGI84367.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 136

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS P  + +   + L  ++ +         +GLAA  IG+  R
Sbjct: 1   MEKKIVK---DILFLSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGMQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++F   +   +     +       KR   I + Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q I   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136


>gi|125717323|ref|YP_001034456.1| peptide deformylase [Streptococcus sanguinis SK36]
 gi|125497240|gb|ABN43906.1| Formylmethionine deformylase, putative [Streptococcus sanguinis
           SK36]
          Length = 136

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 27  DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + + L  ++ + +     + IGLAA  IGV  R+++           P+V  NP +++ S
Sbjct: 22  EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLLSKS 76

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             +   +     +       +R   ITV Y+D N Q Q +   GL A   QHELDHL GI
Sbjct: 77  GPYQTEEGCLSLVGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGI 134

Query: 145 LF 146
           + 
Sbjct: 135 II 136


>gi|300854809|ref|YP_003779793.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300434924|gb|ADK14691.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 136

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     +L   + S    K +   M + D++++ + +   + +GLA   IGV  R
Sbjct: 1   MIKPIVK---DVLFLGQKSEEATKKD---MAVADDLMDTLRANLQNCVGLAGNMIGVRKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V            +  INP I+     +   +     I   +   KR   I V Y+D 
Sbjct: 55  ILVFT-----VGNLIVPMINPVILKKEKPYETEESCLSLIGVRK--TKRYEMIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N ++Q     G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKNQKQVFTGFTAQIIQHEMDHFEGIII 136


>gi|256843756|ref|ZP_05549243.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|295691921|ref|YP_003600531.1| peptide deformylase [Lactobacillus crispatus ST1]
 gi|256613661|gb|EEU18863.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|295030027|emb|CBL49506.1| Peptide deformylase [Lactobacillus crispatus ST1]
          Length = 137

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYR 57
           M  + ++   D   LR+ S   +    + + +  N+ + + +  G   GLAA  IG   +
Sbjct: 1   MTAQKIIH--DQLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQ 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++            P V +NP+II     +   +       +   +V+R   ITV Y + 
Sbjct: 56  IIAFYAGP-----LPFVMLNPRIIQKKQMYLASEGCLS--LEGERNVQRYEEITVTYQNM 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             +         +A  +QHE+DH NGIL 
Sbjct: 109 ELETVTQTFGDFIAETIQHEIDHCNGILI 137


>gi|255525142|ref|ZP_05392086.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|296188109|ref|ZP_06856501.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255511196|gb|EET87492.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|296047235|gb|EFG86677.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 136

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     +L   + S    K +   M ++D++++ + +   + +GLA   IGV  R
Sbjct: 1   MIKPIVK---DVLFLGQKSEKATKDD---MAVVDDLMDTLKANLQNCVGLAGNMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V            +  INP I+     +   +     I   +   KR   I V Y+D 
Sbjct: 55  ILVFT-----VANLIVPMINPVILKKEKPYETEESCLSLIGVRK--TKRYEMIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q     G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKSQKQVFTGFTAQIIQHEMDHFEGIII 136


>gi|55820518|ref|YP_138960.1| peptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55822406|ref|YP_140847.1| peptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|55736503|gb|AAV60145.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55738391|gb|AAV62032.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066]
          Length = 136

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K +V   D   L + S    K +  +   + + LE  +    +G+AA  IGV  R+++
Sbjct: 1   MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLE-FHKDTCVGMAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP +++ S  F   +       +     +R   I V Y+D    
Sbjct: 58  VNI-----GFVNLVMFNPVLVSKSSSFQTEESCLS--LEGSRPTRRYESIEVAYLDERWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   G+ +  +QHELDHL G++ 
Sbjct: 111 PKQLSFSGMPSQIIQHELDHLEGVII 136


>gi|322377869|ref|ZP_08052358.1| peptide deformylase [Streptococcus sp. M334]
 gi|321281292|gb|EFX58303.1| peptide deformylase [Streptococcus sp. M334]
          Length = 136

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+   + +   + L  ++ +         +GLAA  IGV   
Sbjct: 1   MEKKIVK---DILFLSQVSQSASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKC 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP ++++   +   +             KR   I V Y D 
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSYEGLYETEEGCLSLTGVRP--TKRYETIRVAYRDS 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             Q Q +   G  A   QHELDHL G + 
Sbjct: 108 KWQEQTMILTGFPAQICQHELDHLEGRII 136


>gi|157150232|ref|YP_001451024.1| peptide deformylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075026|gb|ABV09709.1| formylmethionine deformylase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 136

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ S    K +   + L  ++ +       + +GLAA  IG   R+++           
Sbjct: 12  LQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGDKKRVIIFMY-----GMV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P++  NP +   S  +   +     +        R   ITV Y+D N Q Q I      A
Sbjct: 64  PIIMFNPILRAKSGPYQTEEGCLSLVGSRS--TTRYQEITVDYLDRNWQPQTITLKDFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|187934485|ref|YP_001886878.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187722638|gb|ACD23859.1| polypeptide deformylase family protein [Clostridium botulinum B
           str. Eklund 17B]
          Length = 136

 Score = 49.8 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYR 57
           + KP+V     +L     S    K +  +   ID++++ +       +GLA   IGV  R
Sbjct: 1   MIKPIVK---DVLFLGEKSEEATKKDKAV---IDDLIDTLKANIEHCVGLAGNMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V            ++      +    + S   E            KR   I V+Y+D 
Sbjct: 55  ILVF-------VAGKVIIPMVNPVILKKEKSYETEESCLSLTGFRKTKRYEIIEVQYLDK 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G +A  +QHE+DH  GI+ 
Sbjct: 108 NFKKKKKVFTGFVAQIIQHEMDHFEGIII 136


>gi|315221248|ref|ZP_07863171.1| peptide deformylase [Streptococcus anginosus F0211]
 gi|315189607|gb|EFU23299.1| peptide deformylase [Streptococcus anginosus F0211]
          Length = 140

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58
           + KP+V   D   L++ ++P  K +  I     ++ + +       +G+AA  IGV  ++
Sbjct: 5   MIKPIVK--DMLFLQQKAQPACKEDVGIGQ---DLFDTLKANQDKCVGMAANMIGVQKQV 59

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++           P++  NP +      +   +              R   ITV Y+D +
Sbjct: 60  IIFMY-----GMVPVIMFNPILKRKLSPYRAEESCLSLAGSRL--TTRYKEITVDYLDQH 112

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q Q +      A   QHELDHL GIL 
Sbjct: 113 WQKQTLTLKDFPAQICQHELDHLEGILI 140


>gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
          Length = 112

 Score = 49.4 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 37/80 (46%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            +FIN ++         +QE C SI  + A V     + V  ++  A+       G    
Sbjct: 21  QIFINHQLRVLDGRTVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQVSGWPVR 80

Query: 133 CLQHELDHLNGILFIDHLSR 152
            LQHE+DHL+G+ +ID +  
Sbjct: 81  NLQHEMDHLDGVWYIDRMDS 100


>gi|256849685|ref|ZP_05555117.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|262047729|ref|ZP_06020681.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|293380519|ref|ZP_06626582.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|312977032|ref|ZP_07788781.1| peptide deformylase [Lactobacillus crispatus CTV-05]
 gi|256713801|gb|EEU28790.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|260571934|gb|EEX28502.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|290922919|gb|EFD99858.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|310896360|gb|EFQ45425.1| peptide deformylase [Lactobacillus crispatus CTV-05]
          Length = 137

 Score = 49.4 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 17/150 (11%)

Query: 1   MVKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLY 56
           M  + ++      L  R+ S   +    + + +  N+ + + +  G   GLAA  IG   
Sbjct: 1   MTAQKII---HNRLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTK 54

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +++            P V +NP+II     +   +       +   +V+R   ITV Y +
Sbjct: 55  QIIAFYAGP-----LPFVMLNPRIIQKKQMYLASEGCLS--LEGERNVQRYEEITVTYQN 107

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
              +         +A  +QHE+DH NGIL 
Sbjct: 108 MELETVTQTFGDFIAETIQHEIDHCNGILI 137


>gi|327461858|gb|EGF08189.1| peptide deformylase [Streptococcus sanguinis SK1]
          Length = 136

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 27  DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + + L  ++ + +     + IGLAA  IGV  R+++           P+V  NP + + S
Sbjct: 22  EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLRSKS 76

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             +   +     +       +R   IT+ Y+D + Q Q +   GL A   QHELDHL GI
Sbjct: 77  GPYQTEESCLSLVGSRP--TQRYQEITIDYLDKHWQQQTMTLKGLPAQICQHELDHLEGI 134

Query: 145 LF 146
           + 
Sbjct: 135 II 136


>gi|325693656|gb|EGD35575.1| peptide deformylase [Streptococcus sanguinis SK150]
 gi|327458954|gb|EGF05302.1| peptide deformylase [Streptococcus sanguinis SK1057]
          Length = 136

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 27  DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + + L  ++ + +     + IGLAA  IGV  R+++           P+V  NP +++ S
Sbjct: 22  EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLLSKS 76

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             +   +     +       +R   ITV Y+D + Q Q +   GL A   QHELDHL GI
Sbjct: 77  GPYKTEEGCLSLVGSRP--TQRYQEITVDYLDKHWQQQTMTLKGLPAQICQHELDHLEGI 134

Query: 145 LF 146
           + 
Sbjct: 135 II 136


>gi|302765893|ref|XP_002966367.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii]
 gi|300165787|gb|EFJ32394.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii]
          Length = 340

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 40/138 (28%)

Query: 21  IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80
           I   + ++  L   ML+V Y  DGIGL   Q+GV  RL+V + +                
Sbjct: 62  INSFDDNVKKL---MLDVTYRRDGIGLLTPQLGVNARLMVFNPEGERG------------ 106

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
                                    +      R    +            A   +HE DH
Sbjct: 107 -------------------------KGKRDRYRSELKSQDINGKKYGSWTARIFRHEYDH 141

Query: 141 LNGILFIDHLSRLKRDMI 158
           L G+L+ID ++    + I
Sbjct: 142 LEGVLYIDQMTPRSLNSI 159


>gi|295106021|emb|CBL03564.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 136

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           ++ + +G+AA  IG   R++V D         P V  NP+I+  S  +   +        
Sbjct: 37  HAHECVGMAANMIGTAKRIIVFD-----DEGTPRVMFNPEIVGRSGTYEAEEGCLS--LP 89

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
                 R   I VR+ D   Q +     G  A  +QHE+DH +GIL 
Sbjct: 90  GSRRTTRYRTIKVRFEDRGFQPREQTFTGFTAQIIQHEIDHCDGILI 136


>gi|224010171|ref|XP_002294043.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970060|gb|EED88398.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 549

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               + I   G LA C QHE+DH  G+L +DH+
Sbjct: 347 CGVTKQITLKGELARCAQHEMDHDRGVLIVDHV 379



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 4   KPLVIFPDPILRRVSRPIE----KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLY 56
            P+  +PDPILR  S P+       +  +  L      +         +GLAA Q GV  
Sbjct: 154 LPMGRWPDPILRHSSSPVSSCVFNNDHQLKQLQLVARALRNTARKEGAVGLAAQQCGVDG 213

Query: 57  RLVVIDLQDHAHRKNPMVF 75
            LV ID     HR      
Sbjct: 214 SLVFIDGIKKTHRSINQQL 232


>gi|169840242|ref|ZP_02873430.1| Peptide deformylase [candidate division TM7 single-cell isolate
          TM7a]
          Length = 71

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 3  KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             +V++  P LR   R  ++++ ++   +D M+ +M   +G+GLAA Q+ +  R  V++
Sbjct: 1  MLQIVLYGHPTLREK-RKSDEVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE 59

Query: 63 L 63
           
Sbjct: 60 H 60


>gi|325690383|gb|EGD32387.1| peptide deformylase [Streptococcus sanguinis SK115]
          Length = 136

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 27  DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + + L  ++ + +     + IGLAA  IGV  R+++           P+V  NP +++ S
Sbjct: 22  EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLLSKS 76

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             +   +     +       +R   ITV Y+D + Q Q +   GL A   QHELDHL G+
Sbjct: 77  GPYKTEEGCLSLVGSRP--TQRYQEITVDYLDKHWQQQTMTLKGLPAQICQHELDHLEGV 134

Query: 145 LF 146
           + 
Sbjct: 135 II 136


>gi|116493404|ref|YP_805139.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103554|gb|ABJ68697.1| N-formylmethionyl-tRNA deformylase [Pediococcus pentosaceus ATCC
           25745]
          Length = 136

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQ 64
           VI    IL + S P  K +  +   + ++++ + +       +AA  IGV  R++V+ + 
Sbjct: 5   VIHDQQILSQTSIPATKQDLSV---VMDLMDTLKANSERCVGMAANMIGVHKRIIVVTM- 60

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +  INP I+   + ++  +       +      R   I V+Y+D   +    
Sbjct: 61  ----GMMNVPMINPVILKKGNPYTTEEGCLSLTGERS--TTRYDEIEVQYLDLEFKKHTQ 114

Query: 125 YADGLLATCLQHELDHLNGILF 146
                +A  +QHE+DH +GI+ 
Sbjct: 115 EFKEFIAQIIQHEVDHCDGIII 136


>gi|227878034|ref|ZP_03996024.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|227862352|gb|EEJ69881.1| peptide deformylase [Lactobacillus crispatus JV-V01]
          Length = 143

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 17/150 (11%)

Query: 1   MVKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLY 56
           M  + ++      L  R+ S   +    + + +  N+ + + +  G   GLAA  IG   
Sbjct: 7   MTAQKII---HNRLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTK 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +++            P V +NP+II     +   +       +   +V+R   ITV Y +
Sbjct: 61  QIIAFYAGP-----LPFVMLNPRIIQKKQMYLASEGCLS--LEGERNVQRYEEITVTYQN 113

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
              +         +A  +QHE+DH NGIL 
Sbjct: 114 MELETVTQTFGDFIAETIQHEIDHCNGILI 143


>gi|251781139|ref|ZP_04824059.1| polypeptide deformylase family protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085454|gb|EES51344.1| polypeptide deformylase family protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 136

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYR 57
           + K +V     +L     S    K +     +ID++++ +       +GLAA  IGV  R
Sbjct: 1   MVKEIVK---DVLFLGEKSEEATKKD---KVVIDDLIDTLKANIEHCVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V            ++      +    +     E            KR   I V+Y+D 
Sbjct: 55  ILVF-------VAGKVIIPMVNPVILKKEKIYETEESCLSLTGFRKTKRYEIIEVQYLDK 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G +A  +QHE+DH  GI+ 
Sbjct: 108 NFKKKKQVFTGFVAQIIQHEMDHFEGIII 136


>gi|110004337|emb|CAK98675.1| putative peptide deformylase 2 protein [Spiroplasma citri]
          Length = 192

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 24/172 (13%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58
           P +R+ S  +   +  +   ++  +++ +  +              +GLAA QIG   ++
Sbjct: 17  PSIRQSSIDVSLPLAPENELVMKKLIDFVRYSQDPQKNSGHTIRPAVGLAAPQIGFNIKM 76

Query: 59  VVIDLQDHAHRKNPMVFINPKII--------TFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
             I +++          I   +I                 +       D    V RS  I
Sbjct: 77  YYIRIEETNDETGFKKIIEHAMINPKIIGKSAQIACIEEGEGCLSVNGDKEGFVPRSFRI 136

Query: 111 TVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            V   D   Q Q  I A    A   QHE  HL G L+ D ++  K++   KK
Sbjct: 137 IVEGYDYLKQQQVTITARSYEAIVFQHEEAHLEGKLYYDLIN--KKEPWLKK 186


>gi|239792061|dbj|BAH72415.1| ACYPI003516 [Acyrthosiphon pisum]
          Length = 119

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 6   LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  + P+  EKI   ++ NLI  M  +M  ++ IGLAA Q+G+ +++ VI 
Sbjct: 27  VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
               +H  +    +   +    +   +  E
Sbjct: 87  FPRPSHYFSKEEILLKGMEHVENHVWINPE 116


>gi|163816477|ref|ZP_02207841.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759]
 gi|158448177|gb|EDP25172.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759]
          Length = 136

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + K +V   D   L + S P+  +++ I   I +M +         +G+A   IG   R+
Sbjct: 1   MVKQIVR--DQMFLSQKSSPMTPMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++ +         +V +NP +++ S  +   +       D    V R   I V + D +
Sbjct: 56  IIVSM-----GFANVVMLNPVLLSKSGAYETEEGCLS--LDGTRKVTRYRDIEVEFQDAS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              + +  +G +A  + HE+DHL G + 
Sbjct: 109 FAKKRMKFNGYIAQIVLHEMDHLEGRII 136


>gi|302335150|ref|YP_003800357.1| formylmethionine deformylase [Olsenella uli DSM 7084]
 gi|301318990|gb|ADK67477.1| formylmethionine deformylase [Olsenella uli DSM 7084]
          Length = 139

 Score = 47.1 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 8/145 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K L    + +L +        ++ +  +LID M       D   LAA QIGV  +++ 
Sbjct: 1   MIKELCKD-EAVLSQRCERATAEDAVVAWDLIDTM---DSLEDVGCLAANQIGVAKQVIA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          I   +     +               A VK S    V       +
Sbjct: 57  YRDDDQVVHVMYNPRIMMGLGASKLEEGCLTREGTVRVTRYAKVKVSFDELVEGSL---K 113

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            +     G +A  +QH  DH NG L
Sbjct: 114 ARRRDYTGWVAEMIQHMCDHCNGKL 138


>gi|281202742|gb|EFA76944.1| hypothetical protein PPL_09696 [Polysphondylium pallidum PN500]
          Length = 614

 Score = 47.1 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             ++  +       +   D+      +    D + + + I ADG+++ CLQHE DHL G 
Sbjct: 26  QKWTKEEIAETGRIEKVLDMMVREMRSNNGCDISGKDRSIEADGIISACLQHENDHLLGR 85

Query: 145 LFIDHLS 151
           +FI+ L 
Sbjct: 86  VFIERLK 92


>gi|157828546|ref|YP_001494788.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|157801027|gb|ABV76280.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila
          Smith']
          Length = 94

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 39/73 (53%)

Query: 6  LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
          +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66 HAHRKNPMVFINP 78
          +      +     
Sbjct: 70 NNKSSPIVFINPD 82


>gi|139438035|ref|ZP_01771588.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC
           25986]
 gi|133776232|gb|EBA40052.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC
           25986]
          Length = 143

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60
           + K  +   + IL +        +  +     ++++ + S  D   LAA QIGV  ++ V
Sbjct: 5   MIKE-LCHDEAILSQRCEVATVEDESVAQ---DLIDTIKSLDDAGCLAANQIGVTKKVCV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +    + F    S  +E CL+  +     +            + +
Sbjct: 61  YL-----DDAGEPHVLYNPRLVFGLGASKMEESCLTHEEVTKSTRYIKCKVAFDQIVDGK 115

Query: 121 HQIIYAD--GLLATCLQHELDHLNGIL 145
            +    D  G  A  +QH +DH  G L
Sbjct: 116 MKECRRDYAGFEAQMIQHMIDHCLGKL 142


>gi|313239302|emb|CBY14250.1| unnamed protein product [Oikopleura dioica]
          Length = 1132

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 26/169 (15%)

Query: 8   IFPDPILRRVSRPI-------------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           +  DP+LR+ +                E  N  IM  +  M   M++  G  + A Q+G+
Sbjct: 13  LIGDPVLRQPAADFDVNVYNSVDMKTFENHNPAIMKSLAKME--MFAQYGWVITAPQVGL 70

Query: 55  LYRLVVIDLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
             +++++ L               +    VF NP+I   +++ +   E  LSIP     +
Sbjct: 71  PIKIMLVQLHLGLDDDGFTIKGTDKTKNYVFANPEIRPLTNEKAFSIESSLSIPALSGVL 130

Query: 105 KRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R   I +   D  A+  + +      +  +Q+ +D LNG++FID ++ 
Sbjct: 131 ERHQLIELTAYDLAARRVVKMTLSPPDSFMVQNAVDQLNGVMFIDKVTD 179


>gi|165933262|ref|YP_001650051.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165908349|gb|ABY72645.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 119

 Score = 46.3 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 39/73 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 35  IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 94

Query: 66  HAHRKNPMVFINP 78
           +      +     
Sbjct: 95  NNKSSPIVFINPD 107


>gi|295094704|emb|CBK83795.1| N-formylmethionyl-tRNA deformylase [Coprococcus sp. ART55/1]
          Length = 136

 Score = 46.3 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58
           + K +V   D   L + S P+  +++ I   I +M +         +G+A   IG   R+
Sbjct: 1   MVKQIVR--DQMFLSQKSSPMTTMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++ +         +V +NP +++ S  +   +       D    V R   I V + D +
Sbjct: 56  IIVSM-----GFANVVMLNPVLLSKSGAYETEEGCLS--LDGTRKVTRYRDIEVEFQDAS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              + +  +G +A  + HE+DHL G + 
Sbjct: 109 FAKKRMKFNGYIAQIVLHEMDHLEGRII 136


>gi|188588885|ref|YP_001921872.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499166|gb|ACD52302.1| polypeptide deformylase family protein [Clostridium botulinum E3
           str. Alaska E43]
          Length = 136

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 22  EKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           E+       +ID++++ +       +GLAA  IGV  R++V            ++     
Sbjct: 17  EEATKKDKVVIDDLIDTLKANIEHCVGLAANMIGVKKRILVF-------VAGKVIIPMVN 69

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            +    +     E            KR   I V+Y+D N + +     G +A  +QHE+D
Sbjct: 70  PVILKKEKIYETEESCLSLTGFRKTKRYEIIEVQYLDKNFKKKKQVFTGFVAQIIQHEMD 129

Query: 140 HLNGILF 146
           H  GI+ 
Sbjct: 130 HFEGIII 136


>gi|330881834|gb|EGH15983.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 32

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLI 32
          M    ++ FPD  LR +++P+  ++  I  L+
Sbjct: 1  MAILNILEFPDSRLRTIAKPVAMVDEGIRQLV 32


>gi|260881156|ref|ZP_05403747.2| peptide deformylase [Mitsuokella multacida DSM 20544]
 gi|260849662|gb|EEX69669.1| peptide deformylase [Mitsuokella multacida DSM 20544]
          Length = 139

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58
           + + +V   D   L + S P ++ +   + + +++++ + +       LAA  IG    +
Sbjct: 3   MIRDIVR--DTFFLAQPSVPAQRKD---VPIAEDLIDTLKANADRCVGLAANMIGERKCI 57

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + I         +  + +    +                 D      R  +I V Y D  
Sbjct: 58  IAI------RVGHAYLAMLNPTVIRHSKEVYNVSEGCLSLDGERPTTRYKWIEVEYRDLK 111

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q        A  +QHE+DH  GIL 
Sbjct: 112 FKKQKQVFRDFPAEIVQHEMDHCEGILI 139


>gi|207110973|ref|ZP_03245135.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 72

 Score = 44.8 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 39/57 (68%)

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
            +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ A  LLA  +QHE+DHLNG+
Sbjct: 16  MMYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGV 72


>gi|169838808|ref|ZP_02871996.1| hypothetical protein cdivTM_17171 [candidate division TM7
           single-cell isolate TM7a]
          Length = 143

 Score = 44.8 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           L   LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 36  LVRVLQHEIDHTNGIVFIDHI-KNKKDAFYK 65


>gi|145530309|ref|XP_001450932.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418565|emb|CAK83535.1| unnamed protein product [Paramecium tetraurelia]
          Length = 282

 Score = 44.4 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----- 65
           D  L   +  +  ++S     ++N+L  M + +   L+A Q+GV  R   I  Q      
Sbjct: 34  DDCLFYSADLVMNLSSRKKKDMNNLLFTMQTLEIPYLSANQVGVEDRYFGIMFQKQNFKW 93

Query: 66  ---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                     ++ +NP +++ S+  S+  E  +  P  R+ ++R   I + +     +  
Sbjct: 94  SLIEEKNLEKLLCVNPLVVSVSETTSIDWETNICFPFIRSQIERYDRIRLHFQTLEDEQ- 152

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
               +G  A  +Q  +D LNG   ID
Sbjct: 153 EFEFEGFNARVVQQAIDSLNGYQIID 178


>gi|145509567|ref|XP_001440722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407950|emb|CAK73325.1| unnamed protein product [Paramecium tetraurelia]
          Length = 237

 Score = 44.0 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPI---LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +++F D +   L          N    + ++ M           LAA Q+G+   
Sbjct: 1   MA--NIIVFGDKLSNALFSKCIYYGAFNKRFYSKVNQMKLAAVDKRIRILAANQVGLEQN 58

Query: 58  LVVI-DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           L ++             V INPKI+  S++     E  +S P ++A V R   I V Y D
Sbjct: 59  LFIMLPQSSKMIPSEYKVIINPKILKISNEVIENTEESISFPQFKAKVNRYKTIFVSYDD 118

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +       GL +   Q  +D + GI  I  ++   +  +  +  K  +L
Sbjct: 119 KKGKTVEEELKGLESIWYQQAIDQVMGIPCISWIASQGKVELKPEYQKQAEL 170


>gi|302779762|ref|XP_002971656.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii]
 gi|300160788|gb|EFJ27405.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii]
          Length = 556

 Score = 41.3 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           V++PDP LR  +  I   + ++  L   ML+V Y  DG+GL+  Q+G        
Sbjct: 73  VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPQLGKGKGWPWY 124


>gi|210630312|ref|ZP_03296375.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279]
 gi|210160520|gb|EEA91491.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279]
          Length = 139

 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 8/145 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVV 60
           + K LV   + IL   S P E   +   ++  ++++ +    D   LAA QIGV   +V 
Sbjct: 1   MIKELVHD-EAIL---STPCEVATAADADVAQDLVDTLLSIEDAACLAANQIGVTKAIVA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +          +   +  +  + S             A +K S    V       +
Sbjct: 57  LADDEGNAHVMFNPKVLFGMGAYKAEESCLTREGSVKVTRFAKIKVSYDELVDGEL---K 113

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            +        A  +QH  DH NG L
Sbjct: 114 PRKRDFVEWAAELIQHMCDHCNGKL 138


>gi|295838352|ref|ZP_06825285.1| formylmethionine deformylase [Streptomyces sp. SPB74]
 gi|295826974|gb|EDY42785.2| formylmethionine deformylase [Streptomyces sp. SPB74]
          Length = 289

 Score = 40.5 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 18/147 (12%)

Query: 6   LVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
           +++   P L   +RP+ + +              I  ++D +L +    +G+GL+A QIG
Sbjct: 127 VLLEGAPEL---ARPVTEFDLPREREEATRTVRAIEAVLDRVLRLCPFPEGVGLSAPQIG 183

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     ++     A        +NP++   S + +     C   P  R  V+    ITV 
Sbjct: 184 IPRAAALVQPPWGAPAVI---LLNPRVTATSRETTESVATCPGHPAPRPPVRHPRDITVA 240

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDH 140
                           L+  + HE+ H
Sbjct: 241 TTTLTGHPLSATYTHPLSHLVHHEIGH 267


>gi|297201621|ref|ZP_06919018.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197711008|gb|EDY55042.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 146

 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
            +   G GLAA Q+GV  RL V D  D    ++    +NP++           +      
Sbjct: 15  PWPKAGAGLAANQVGVGLRLFVYDCPDDDEVRHVGHLVNPELDQLDPAGRRLLDDSEGCL 74

Query: 99  DYRADV---KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
                V    R      R  D + +  +I   G  A C  HE D
Sbjct: 75  SGPGAVMAVPRPDRAGGRGFDRDGEPLVIEGTGYFAGCPAHETD 118


>gi|318077239|ref|ZP_07984571.1| hypothetical protein SSA3_11078 [Streptomyces sp. SA3_actF]
          Length = 92

 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 30/76 (39%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            +NP++I  S + +   E C           R   ITVR                LA  +
Sbjct: 8   LLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLV 67

Query: 135 QHELDHLNGILFIDHL 150
            HE+DHL G+L   HL
Sbjct: 68  HHEIDHLKGLLHPPHL 83


>gi|307706187|ref|ZP_07643005.1| polypeptide deformylase family protein [Streptococcus mitis SK321]
 gi|307618447|gb|EFN97596.1| polypeptide deformylase family protein [Streptococcus mitis SK321]
          Length = 108

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 45/149 (30%)

Query: 2   VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57
           ++K +V     IL   +VS+P  + +   + L  ++ +         +GLAA  IGV  R
Sbjct: 1   MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ +         P+V  NP +++    +   +                          
Sbjct: 55  VIIFN-----LGLVPVVMFNPVLLSSEGAYETEEGC------------------------ 85

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
                 +   G  A   QHELDHL G + 
Sbjct: 86  ------LSLTGFPAQICQHELDHLEGRII 108


>gi|146318043|ref|YP_001197755.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
 gi|145688849|gb|ABP89355.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
          Length = 70

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP II+ +  +   +       +      R   I V + D + +   +      A  +
Sbjct: 1   MYNPVIISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFFDASWKKISLKLTDFQAQIV 58

Query: 135 QHELDHLNGILF 146
           QHELDHL GI+ 
Sbjct: 59  QHELDHLEGIII 70


>gi|38141771|dbj|BAD00707.1| putative polypeptide deformylase [Streptococcus equi subsp.
          zooepidemicus]
          Length = 152

 Score = 39.4 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 5  PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51
           ++   +P LR V++ +E  ++ D + L + M++ +  +              +GLAA Q
Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52 IGVLYRLVVI 61
          I V  R++ +
Sbjct: 78 IDVSKRIIAV 87


>gi|163750342|ref|ZP_02157583.1| polypeptide deformylase [Shewanella benthica KT99]
 gi|161330014|gb|EDQ00999.1| polypeptide deformylase [Shewanella benthica KT99]
          Length = 57

 Score = 39.4 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
                V + D N         G +A   QHE  HL GI  I+ 
Sbjct: 1   MKDQDVSFQDLNGLEYHPSLTGFIARIFQHEYVHLQGITLIER 43


>gi|295108734|emb|CBL22687.1| N-formylmethionyl-tRNA deformylase [Ruminococcus obeum A2-162]
          Length = 77

 Score = 38.6 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
             R   I V Y D N + +     G  A   QHE+DHL+G + 
Sbjct: 35  TTRYQEIEVEYYDFNWKKKRQRLSGWTAQICQHEIDHLSGKII 77


>gi|307321264|ref|ZP_07600665.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83]
 gi|306893074|gb|EFN23859.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83]
          Length = 221

 Score = 38.6 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLVQL 168
            +  C  HE  HLNG LF+D + + +   D I +K+ K+++L
Sbjct: 124 WICFCPMHEFTHLNGRLFVDFVGKTETLWDDI-RKLEKILKL 164


>gi|146320223|ref|YP_001199934.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
 gi|145691029|gb|ABP91534.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
          Length = 53

 Score = 38.6 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
              R   I V + D + +   +      A  +QHELDHL GI+ 
Sbjct: 10  PTTRYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGIII 53


>gi|253795648|ref|YP_003038744.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739956|gb|ACT34291.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem]
          Length = 166

 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           G+ A C QHELDH+ G+L  D LS      ++ ++ +L +
Sbjct: 123 GVAACCCQHELDHVVGVLIAD-LSGGDLRAVSFELKQLRR 161


>gi|118371117|ref|XP_001018758.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89300525|gb|EAR98513.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1142

 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 29/174 (16%)

Query: 24   INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----------------------- 60
                +   I +M +  +      L++ QIG+   +VV                       
Sbjct: 871  PTKQLKQSILDMKKTAFVYQLPYLSSNQIGIEKSVVVFSNKIVENKYYDSEYVKFDTYLN 930

Query: 61   --IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMD 116
              I    +   K   +F      +        ++   C S     + V+R   I ++YMD
Sbjct: 931  PKITKISNVINKQSNIFFTIYHQSLFSKKQKLEDFEECTSTFGIESQVERHTDILIQYMD 990

Query: 117  CNAQHQIIYADGLLATCLQHELDHLNGILFID-HLSRLKRDMITKKMSKLVQLR 169
                 +     G  +   Q  +D  +G L I  ++S+ K + I++K   L   +
Sbjct: 991  EEGNMKEEEMSGFKSRLFQQAIDLQSGKLPIKWNISKGK-NRISEKYLNLQNAK 1043


>gi|289805200|ref|ZP_06535829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 40

 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 134 LQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168
           +QHE+DHL G L    + S LK+  I +K+ KL +L
Sbjct: 1   MQHEMDHLVGKLVYSIICSPLKQQRIRQKVEKLDRL 36


>gi|302765901|ref|XP_002966371.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii]
 gi|300165791|gb|EFJ32398.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii]
          Length = 374

 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           V++PDP LR  +  I   + ++  L   ML+V Y  DG+GL+  ++G        
Sbjct: 73  VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPRLGKGKGWPWY 124


>gi|126309915|ref|XP_001378780.1| PREDICTED: similar to bromodomain and PHD finger containing, 3
           [Monodelphis domestica]
          Length = 1184

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           I++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 ISADTFELLVDRLEKESYLESRSSGAQQTLIDEDAFCCVCMDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|115750199|ref|XP_001201887.1| PREDICTED: similar to Rnf10 protein [Strongylocentrotus purpuratus]
 gi|115921063|ref|XP_780048.2| PREDICTED: similar to Rnf10 protein [Strongylocentrotus purpuratus]
          Length = 913

 Score = 35.9 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 4/126 (3%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           S  + K   +  +  D++LE   S+   G  + Q  V   +     ++   ++       
Sbjct: 473 STDVTKEPKETEDCTDDVLEESKSSGNTGNPSPQEDVAAPVSEKTGEEEEKKEELDGREE 532

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL-ATCLQH 136
            +                +    R      +     Y   + Q   +   G L A CL H
Sbjct: 533 KEKEVEDHIEMSPSHADSASVRERKIPPSHSRNVFFYQAEDGQQLFL---GSLNARCLMH 589

Query: 137 ELDHLN 142
           E  HL 
Sbjct: 590 EYGHLE 595


>gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1001

 Score = 35.9 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 131 ATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168
           A  +QHE+D+   I F DHL   ++RD+  +K+ + + L
Sbjct: 752 ANTMQHEIDYYLRIGFTDHLAKPIERDVFIRKVRQYLNL 790


>gi|326920374|ref|XP_003206449.1| PREDICTED: astacin-like metalloendopeptidase-like [Meleagris
           gallopavo]
          Length = 410

 Score = 35.9 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 20/157 (12%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQI------GVLYRLVVIDLQDHAHRKNPMVF 75
            +I+S+   + + +LEV   +         +       +  R            + P V 
Sbjct: 52  TEIDSEDEVIFNRILEVNKDSSRYLQEGDIVPRRSRSAINCRNCYWPQSRDGIVRIPYVL 111

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG------- 128
                               ++       +++    +     +         G       
Sbjct: 112 DPTYEENHVKGIHEAMAEFETLTCINFVKRKTERDYLIIRSADGCWSNYGKVGGGQTVSV 171

Query: 129 -----LLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                +    +QHELDH  G L  +H SR  RD   +
Sbjct: 172 MKGGCMWKGIIQHELDHALGFLH-EH-SRSDRDRYVR 206


>gi|126649165|ref|XP_001388255.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117177|gb|EAZ51277.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 632

 Score = 35.9 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/106 (8%), Positives = 29/106 (27%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           PIE +N D+ N +  + +         +   Q+  +                  +  N  
Sbjct: 374 PIEYVNDDLFNYVFCLTDEPSEDLIKNIGRGQLDRMRNEFSYFYPLDCRVSGKDLIFNHL 433

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +   +  +++++     P            +++          + 
Sbjct: 434 TMCLYNHAAIWEDRKDLWPRSFYCNGHVMIDSMKMSKSTGNWITLE 479


>gi|67594615|ref|XP_665813.1| KIAA1352 protein [Cryptosporidium hominis TU502]
 gi|54656652|gb|EAL35581.1| KIAA1352 protein [Cryptosporidium hominis]
          Length = 624

 Score = 35.9 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/106 (8%), Positives = 29/106 (27%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           PIE +N D+ N +  + +         +   Q+  +                  +  N  
Sbjct: 374 PIEYVNDDLFNYVFCLTDEPSEDLIKNIGRGQLDRMRNEFSYFYPLDCRVSGKDLIFNHL 433

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +   +  +++++     P            +++          + 
Sbjct: 434 TMCLYNHAAIWEDRKDLWPRSFYCNGHVMIDSMKMSKSTGNWITLE 479


>gi|303242038|ref|ZP_07328530.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus
           CD2]
 gi|302590456|gb|EFL60212.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus
           CD2]
          Length = 36

 Score = 35.9 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           ++   GLLA    HE+DHL   L ID +    +  I
Sbjct: 1   MVEGTGLLAWEFCHEIDHLEQSLLIDKIIPGTKKSI 36


>gi|309805322|ref|ZP_07699372.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
 gi|308165322|gb|EFO67555.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
          Length = 100

 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 5  PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
           +V   + +LR+V + +   +N     L ++M+            E      G+GLAA Q
Sbjct: 6  DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52 IGVLYRLVVIDLQDHA 67
          +G   ++  + + D  
Sbjct: 66 VGESVQMAALLVPDDQ 81


>gi|76787258|ref|YP_330655.1| ornithine carbamoyltransferase [Streptococcus agalactiae A909]
 gi|77405133|ref|ZP_00782232.1| ornithine carbamoyltransferase [Streptococcus agalactiae H36B]
 gi|77410880|ref|ZP_00787237.1| ornithine carbamoyltransferase [Streptococcus agalactiae CJB111]
 gi|76562315|gb|ABA44899.1| ornithine carbamoyltransferase [Streptococcus agalactiae A909]
 gi|77163098|gb|EAO74052.1| ornithine carbamoyltransferase [Streptococcus agalactiae CJB111]
 gi|77176276|gb|EAO79046.1| ornithine carbamoyltransferase [Streptococcus agalactiae H36B]
 gi|319746152|gb|EFV98425.1| ornithine carbamoyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 332

 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           + PDP L    + I K     + + D++ E +  +D   +    + V         ++  
Sbjct: 191 LEPDPELLSKCQEIAKTTGASIEITDDIAEGVRDSD---VLYTDVWVSMGEPDEVWKERI 247

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P       +    +   +++    S   +  D K    I  +Y     +      +
Sbjct: 248 ALLEPYRITQEMLNMTENPNVIFEHCLPSF--HNIDTKVGYDIYEKYGLKEMEVSDEVFE 305

Query: 128 GLLATCLQ 135
           G  +   Q
Sbjct: 306 GPHSVVFQ 313


>gi|327283585|ref|XP_003226521.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like
           [Anolis carolinensis]
          Length = 1159

 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 28/114 (24%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           I+++   L+ + LE     +     + Q  +    V     D     + ++         
Sbjct: 179 ISAETFELLLDRLEKESYMESRNNGSQQTLIDEDAVCCVCMDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSHPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|291223817|ref|XP_002731904.1| PREDICTED: chloride channel calcium activated 2-like [Saccoglossus
           kowalevskii]
          Length = 978

 Score = 35.1 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 4/132 (3%)

Query: 27  DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD- 85
           +   LI+ +  V  +       A+Q  + ++ + I +      K   +    +    +  
Sbjct: 51  EDDRLIERIKTVFTTGSEYLFNALQRRIFWKQITILIPKTWSVKPEYMAAKDESFERAHV 110

Query: 86  ---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
              + +                K+  +I +       +    Y  G     L HE  HL 
Sbjct: 111 IIDNPNPDWGNNPYTQQIGGCGKKGEYIHLTPDYLLDKDTSEYIWGPAGRLLVHEWGHLR 170

Query: 143 GILFIDHLSRLK 154
             LF ++ +  +
Sbjct: 171 YGLFDEYFTSYE 182


>gi|315647001|ref|ZP_07900115.1| putative transcriptional regulator [Paenibacillus vortex V453]
 gi|315277653|gb|EFU40978.1| putative transcriptional regulator [Paenibacillus vortex V453]
          Length = 213

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMS 163
           E++H+ G LF+D L + +R  + +K  
Sbjct: 96  EINHMFGELFVDELFKRRRKRLEQKYQ 122


>gi|313889848|ref|ZP_07823490.1| ornithine carbamoyltransferase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121893|gb|EFR44990.1| ornithine carbamoyltransferase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PDP L    + I K    ++ + D++ + + ++D   +    + V         ++    
Sbjct: 193 PDPELLAKCQEIAKKTGAVIEITDDIEKGVLNSD---VLYTDVWVSMGEPDEVWKERIAL 249

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
             P       I    +   +++    S  +    + +  +      +   +      +G 
Sbjct: 250 LEPYRVTQKMIEMTKNPNVIFEHCLPSFHNTDTKIGKEIYEKYGLKEM--EVSDEVFEGP 307

Query: 130 LATCLQ 135
            +   Q
Sbjct: 308 HSVVFQ 313


>gi|296229725|ref|XP_002760386.1| PREDICTED: tenascin-N isoform 2 [Callithrix jacchus]
          Length = 1127

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/122 (8%), Positives = 23/122 (18%), Gaps = 4/122 (3%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           +  ++ + + +  L + M+E+            Q     R         +          
Sbjct: 102 ATSVQDLLARVKKLEEEMMEMKKQ--CSAQRCCQGATDLRHHCSGHGTFSLETCSCHCQE 159

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT--CLQ 135
               T  +  +                                 +     G      C  
Sbjct: 160 GWEGTTCEQQACPWACSGHGRCVDGHCLCHEPYVGADCGYPPCPENCSGHGECVRGVCQC 219

Query: 136 HE 137
           HE
Sbjct: 220 HE 221


>gi|296229723|ref|XP_002760385.1| PREDICTED: tenascin-N isoform 1 [Callithrix jacchus]
          Length = 1304

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/122 (8%), Positives = 23/122 (18%), Gaps = 4/122 (3%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           +  ++ + + +  L + M+E+            Q     R         +          
Sbjct: 102 ATSVQDLLARVKKLEEEMMEMKKQ--CSAQRCCQGATDLRHHCSGHGTFSLETCSCHCQE 159

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT--CLQ 135
               T  +  +                                 +     G      C  
Sbjct: 160 GWEGTTCEQQACPWACSGHGRCVDGHCLCHEPYVGADCGYPPCPENCSGHGECVRGVCQC 219

Query: 136 HE 137
           HE
Sbjct: 220 HE 221


>gi|198418831|ref|XP_002122150.1| PREDICTED: similar to sperm phosphodiesterase 5 [Ciona
           intestinalis]
          Length = 950

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 39/136 (28%), Gaps = 6/136 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +  + D + R V+ PI +    ++        +++ S D   + A+++ +      +   
Sbjct: 509 IRPWQDEVDRVVNEPIPEGEKYNLYQF--TFSDLLMSDDETVMGAMRMFLDLDAFNLFHI 566

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   ++                    L++      +             +      
Sbjct: 567 RQETMLRWLITTRRCYRPVYY---HNWRHGLNVAHTMFLLLDRMGKDTNTPGIDKAFNDR 623

Query: 125 YADGLLATCLQHELDH 140
               L+  C  H++DH
Sbjct: 624 EKFALVVACFCHDIDH 639


>gi|73972700|ref|XP_538883.2| PREDICTED: similar to Bromodomain and PHD finger-containing protein
           3 [Canis familiaris]
          Length = 1319

 Score = 34.4 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 2/116 (1%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81
             +++D   L+ + LE     +     A Q  +          D     + ++       
Sbjct: 289 SVVSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICN 348

Query: 82  --TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
                + + V                 S  +               +DG  A  + 
Sbjct: 349 LAVHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 404


>gi|157821409|ref|NP_001101085.1| bromodomain and PHD finger-containing protein 3 [Rattus norvegicus]
 gi|149043488|gb|EDL96939.1| bromodomain and PHD finger containing, 3 (predicted) [Rattus
           norvegicus]
          Length = 1199

 Score = 34.4 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|124486783|ref|NP_001074784.1| bromodomain and PHD finger-containing protein 3 [Mus musculus]
 gi|187465752|emb|CAQ51742.1| bromodomain and PHD finger containing, 3 [Mus musculus]
 gi|187956992|gb|AAI57916.1| Bromodomain and PHD finger containing, 3 [Mus musculus]
          Length = 1204

 Score = 34.4 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|148690644|gb|EDL22591.1| mCG18535 [Mus musculus]
          Length = 1199

 Score = 34.4 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|281338425|gb|EFB14009.1| hypothetical protein PANDA_002219 [Ailuropoda melanoleuca]
          Length = 1206

 Score = 34.4 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|329663705|ref|NP_001192556.1| bromodomain and PHD finger-containing protein 3 [Bos taurus]
 gi|297488932|ref|XP_002697251.1| PREDICTED: CG1845-like [Bos taurus]
 gi|296474528|gb|DAA16643.1| CG1845-like [Bos taurus]
          Length = 1207

 Score = 34.4 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|194223447|ref|XP_001918146.1| PREDICTED: bromodomain and PHD finger containing, 3 [Equus
           caballus]
          Length = 1206

 Score = 34.0 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 180 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 239

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 240 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 293


>gi|327191719|gb|EGE58721.1| hypothetical protein RHECNPAF_280017 [Rhizobium etli CNPAF512]
          Length = 371

 Score = 34.0 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 2/119 (1%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           + P+++++ ++  + + + +           A Q+   +    ID  D A        + 
Sbjct: 237 AVPVDQLHDELRRIAEQLEQAF--AVQRAEHAGQVVGHHPHAGIDQADIAPCAAETNLLR 294

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
            +       F   Q    +      D     +              ++ + + A  +QH
Sbjct: 295 LQQHHLRAGFGKMQGRGEAGVAATDDDDVGRYRACERRGSRRFGCGLFPEAMGARIIQH 353


>gi|291396103|ref|XP_002714704.1| PREDICTED: bromodomain and PHD finger containing, 3 [Oryctolagus
           cuniculus]
          Length = 1207

 Score = 34.0 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|114607125|ref|XP_518433.2| PREDICTED: bromodomain and PHD finger containing, 3 isoform 5 [Pan
           troglodytes]
 gi|114607127|ref|XP_001172835.1| PREDICTED: bromodomain and PHD finger containing, 3 isoform 3 [Pan
           troglodytes]
 gi|114607129|ref|XP_001172849.1| PREDICTED: bromodomain and PHD finger containing, 3 isoform 4 [Pan
           troglodytes]
          Length = 1205

 Score = 34.0 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|301756985|ref|XP_002914339.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like
           [Ailuropoda melanoleuca]
          Length = 1207

 Score = 34.0 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|297677960|ref|XP_002816850.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like
           isoform 1 [Pongo abelii]
 gi|297677962|ref|XP_002816851.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like
           isoform 2 [Pongo abelii]
          Length = 1205

 Score = 34.0 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|149410463|ref|XP_001514689.1| PREDICTED: similar to Chromosome 14 open reading frame 106
           [Ornithorhynchus anatinus]
          Length = 921

 Score = 34.0 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT--VR 113
            R  +    ++  +       +         F   +   +S    +    R + +   ++
Sbjct: 449 IRKFMFGFPENWKQYVEDFLQDLSTDEAFSIFRFIELSPVSHNPSKVSELRYSRVGRPLK 508

Query: 114 YMDCNAQHQIIYADGLLATCLQHE--LDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 + +    D  +   L HE  +DHL  +     + + K  +  KK+ K V+  +
Sbjct: 509 SPLQFWRGEREICDHEMNVTL-HEGGVDHLQSLETTGKMEKKKLSLARKKVKKEVKTNE 566


>gi|253741601|gb|EES98467.1| Protein phosphatase 2A regulatory subunit, putative [Giardia
           intestinalis ATCC 50581]
          Length = 892

 Score = 34.0 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/120 (10%), Positives = 30/120 (25%), Gaps = 5/120 (4%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
             DIM+   +M  + +          Q  ++ ++V +               + +I    
Sbjct: 746 TDDIMHFCPDMEAMYHCHKRDTNR--QKDIMCQMVDMAKHTQHCVGEGFYHQDQRISKRD 803

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 Q    ++        +        +  +            A  +    D L G+
Sbjct: 804 VRRCKTQGNLFNVFFNFTKAVQFECKDPYTIRYSPHMFEKTTWERFARII---YDSLEGM 860


>gi|6331389|dbj|BAA86600.1| KIAA1286 protein [Homo sapiens]
          Length = 1214

 Score = 34.0 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 188 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 247

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 248 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 301


>gi|168273214|dbj|BAG10446.1| bromodomain and PHD finger-containing protein 3 [synthetic
           construct]
          Length = 1205

 Score = 34.0 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 292


>gi|148727368|ref|NP_056510.2| bromodomain and PHD finger-containing protein 3 [Homo sapiens]
 gi|71153496|sp|Q9ULD4|BRPF3_HUMAN RecName: Full=Bromodomain and PHD finger-containing protein 3
 gi|56208192|emb|CAI21669.1| bromodomain and PHD finger containing, 3 [Homo sapiens]
 gi|119624283|gb|EAX03878.1| bromodomain and PHD finger containing, 3, isoform CRA_b [Homo
           sapiens]
          Length = 1205

 Score = 34.0 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 292


>gi|119624285|gb|EAX03880.1| bromodomain and PHD finger containing, 3, isoform CRA_d [Homo
           sapiens]
 gi|119624287|gb|EAX03882.1| bromodomain and PHD finger containing, 3, isoform CRA_d [Homo
           sapiens]
          Length = 1204

 Score = 34.0 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 292


>gi|311260309|ref|XP_001927497.2| PREDICTED: bromodomain and PHD finger-containing protein 3 [Sus
           scrofa]
          Length = 1210

 Score = 34.0 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSNGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|114607133|ref|XP_001172802.1| PREDICTED: bromodomain and PHD finger containing, 3 isoform 1 [Pan
           troglodytes]
          Length = 1004

 Score = 33.6 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81
           +++D   L+ + LE     +     A Q  +          D     + ++         
Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
              + + V                 S  +               +DG  A  + 
Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292


>gi|118094412|ref|XP_001234330.1| PREDICTED: similar to calcium-activated chloride channel-2 [Gallus
           gallus]
          Length = 930

 Score = 33.6 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 4/127 (3%)

Query: 26  SDIMNLIDNMLEVMYSTDGIGLAAVQ---IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82
            +   L+ ++ E++        +A +        ++++         + P      K   
Sbjct: 43  PEDGRLVAHLQEMITEASSYLFSATKGRFYFRSVKILIPPTWKEKSYEKPKHETYEKADV 102

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
                            + A  K   +I     +  A        G       HE  HL 
Sbjct: 103 IVAAPYWKHGDDPYTLQHEACGKMGKYIHFT-PNFLANDYATDIYGSRGRTFVHEWAHLR 161

Query: 143 GILFIDH 149
             +F ++
Sbjct: 162 WGVFDEY 168


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.312    0.126    0.382 

Lambda     K      H
   0.267   0.0391    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,462,128,756
Number of Sequences: 13984884
Number of extensions: 59851890
Number of successful extensions: 370845
Number of sequences better than 10.0: 3535
Number of HSP's better than 10.0 without gapping: 3415
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 363797
Number of HSP's gapped (non-prelim): 3649
length of query: 170
length of database: 4,792,584,752
effective HSP length: 128
effective length of query: 42
effective length of database: 3,002,519,600
effective search space: 126105823200
effective search space used: 126105823200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 75 (33.6 bits)