RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780297|ref|YP_003064710.1| peptide deformylase
[Candidatus Liberibacter asiaticus str. psy62]
(170 letters)
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas
oryzae PV. oryzae KACC10331, hydrolase; 2.60A
{Xanthomonas oryzae PV} (A:)
Length = 171
Score = 177 bits (449), Expect = 9e-46
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 7/170 (4%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
M++ ++ D L RV+ + + S + L+ +M E M + G+GLAA QI V +L+
Sbjct: 1 MIR-DIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLM 59
Query: 60 VIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
V + A N +I SD+ EGCLSIP RA + R +I R
Sbjct: 60 VFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRG 119
Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
+ A+G A +QHE DHL G L+ + +S
Sbjct: 120 FAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDDVLSY 169
>1rl4_A Formylmethionine deformylase; crystal engineering, drug
design, malaria, PDF, peptide deformylase, hydrolase;
HET: BRR BL5; 2.18A {Plasmodium falciparum 3D7} (A:)
Length = 188
Score = 175 bits (445), Expect = 3e-45
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
+ +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V
Sbjct: 6 KDEIKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIV 65
Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
+ +N +FINP I+ S EGCLS P V+R + +++ Y D N
Sbjct: 66 WNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDING 125
Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
+ G+ + QHE DHLNG LFID ++++ + + K+++L++
Sbjct: 126 YKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDY 175
>3cpm_A Peptide deformylase, chloroplast; alpha beta, hydrolase,
iron, metal-binding, plastid, protein biosynthesis,
transit peptide; 2.40A {Arabidopsis thaliana} (A:1-172)
Length = 172
Score = 174 bits (443), Expect = 5e-45
Identities = 58/158 (36%), Positives = 85/158 (53%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
+V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V
Sbjct: 14 ETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMV 73
Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
+ +V +NPKI +SD + EGCLS P A+V R + + D +
Sbjct: 74 FNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGE 133
Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
I L A QHE DHL G+LF D ++ D I
Sbjct: 134 RFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSI 171
>1y6h_A Peptide deformylase; open and close conformation, PDF,
hydrolase; 2.20A {Leptospira interrogans} (A:)
Length = 177
Score = 174 bits (442), Expect = 6e-45
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 4 KPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
+ ++ DPILR++S P+ + + LI +M + M +G+GLAA QIG+L ++VV
Sbjct: 3 RKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVV 62
Query: 61 IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
+ +D + +NP I + D S + EGCLS+P R V+R I +++M
Sbjct: 63 VGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWM 122
Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
D DG A QHE DHL GIL++D L K + + + D
Sbjct: 123 DEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSHNVLD 177
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote,
higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis
thaliana} PDB: 1zy0_A 1zy1_A (A:)
Length = 197
Score = 172 bits (436), Expect = 3e-44
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
M +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R
Sbjct: 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60
Query: 58 LVVIDLQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
++V++ + MV +NP + S+ +++ EGCLS+ +RA
Sbjct: 61 IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120
Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
V+R + V D + + A G A LQHE DHL+G L++D + +
Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDL 180
Query: 164 KLVQLR 169
L +
Sbjct: 181 PLAEGC 186
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase;
1.70A {Bacillus cereus} PDB: 1ws1_A* (A:)
Length = 156
Score = 171 bits (434), Expect = 5e-44
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
M ++ P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V
Sbjct: 1 MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60
Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
+D+ D + INP I+ + V EGCLS P +V+R+ +I VR + +
Sbjct: 61 VDVDDD---TGKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116
Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
++ A+G LA +QHE+DHL+G+LF ++R + +
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENELE 156
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme,
deformylation, structural genomics, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} (A:)
Length = 176
Score = 169 bits (430), Expect = 1e-43
Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 5/165 (3%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
+ +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V
Sbjct: 11 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFV 70
Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
+D+ + P+ INP+I+ + V +EG LS P+ +++RS I V+Y + +
Sbjct: 71 MDVGN-----GPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGE 125
Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
+ +G A QHE DHLNG+L ID +S KR ++ KK+ +
Sbjct: 126 YVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDI 170
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase,
iron, metal- binding, mitochondrion, protein
biosynthesis, transit peptide; HET: BB2; 1.70A {Homo
sapiens} PDB: 3g5p_A (A:)
Length = 183
Score = 167 bits (424), Expect = 7e-43
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
M + DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +
Sbjct: 2 MSFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 61
Query: 58 LVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
++ ++L + R+ VF+NP + + EGC S+ + A
Sbjct: 62 VLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLAC 121
Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
V R + + +D N + + A G A +QHE+DHL G LFID + R
Sbjct: 122 VPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD--SRTFTNVYWM 179
Query: 164 KL 165
K+
Sbjct: 180 KV 181
>1n5n_A Peptide deformylase; metalloenzyme, drug design,
deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa}
(A:1-157)
Length = 157
Score = 164 bits (417), Expect = 6e-42
Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV
Sbjct: 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72
Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
+DL + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D +
Sbjct: 73 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130
Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
A+GLLA C+QHE DHLNG LF+
Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFV 157
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A (A:1-148)
Length = 148
Score = 161 bits (409), Expect = 4e-41
Identities = 51/147 (34%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L
Sbjct: 3 LEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINL 62
Query: 64 QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+
Sbjct: 63 PQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAE 121
Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
+++ A LLA +QHE+DHLNG+LF+
Sbjct: 122 VKVLEASELLAVAIQHEIDHLNGVLFV 148
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron,
metal-binding, protein biosynthesis; HET: NVC; 1.56A
{Mycobacterium tuberculosis} (A:22-180)
Length = 159
Score = 160 bits (406), Expect = 9e-41
Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 7/156 (4%)
Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN----- 71
+ +D+ LI M + M + +G+GLAA QIG RL V D
Sbjct: 1 TVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGV 60
Query: 72 --PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
V +I D EGCLS+P R+ + V +D + I GL
Sbjct: 61 VINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGL 120
Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
A LQHE HL+G L++D L + +
Sbjct: 121 FARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSH 156
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A
{Bacillus cereus atcc 14579} PDB: 1lqy_A* (A:)
Length = 185
Score = 158 bits (400), Expect = 4e-40
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEK-------------INSDIMNLIDNMLEVMYSTDGIGL 47
+ K ++ DPILR V+ + I I + M E GIGL
Sbjct: 3 LTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGL 62
Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRADV 104
AA QIGV +++ + + D NPKII+ S + + EGCLS+ + V
Sbjct: 63 AAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYV 122
Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
R ITV+ N + + GL A QHE+DHLNG++F DH+++
Sbjct: 123 PRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENPFAAPDDSKP 182
Query: 165 L 165
L
Sbjct: 183 L 183
>2aia_A Peptide deformylase; hydrolase; HET: SB8; 1.70A
{Streptococcus pneumoniae} PDB: 2ai7_A* 2aie_P* 1lm6_A
2os3_A* (A:)
Length = 203
Score = 157 bits (398), Expect = 6e-40
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLID-------------NMLEVMYSTDGIGL 47
+ ++ +P LR V+ + SD ++ M E M G+GL
Sbjct: 14 IDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGL 73
Query: 48 AAVQIGVLYRLVVIDLQD--------HAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
AA Q+ + R++ + + + + NPKI++ S + EGCLS+
Sbjct: 74 AAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSV 133
Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
+ V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++
Sbjct: 134 DRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPF 193
Query: 157 MITKKMSKL 165
+ + L
Sbjct: 194 AVKDGLLIL 202
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel,
hydrolase, metal-binding; 1.69A {Escherichia coli} PDB:
2w3u_A (A:1-143)
Length = 143
Score = 156 bits (397), Expect = 1e-39
Identities = 59/144 (40%), Positives = 98/144 (68%), Gaps = 3/144 (2%)
Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+
Sbjct: 3 LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV 62
Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
++ +V INP+++ S + +EGCLSIP+ RA V R+ + +R +D + +
Sbjct: 63 SENRD--ERLVLINPELLEKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 124 IYADGLLATCLQHELDHLNGILFI 147
+ ADGLLA C+QHE+DHL G LF+
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFM 143
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase;
1.30A {Escherichia coli BL21} (A:1-143)
Length = 143
Score = 156 bits (397), Expect = 1e-39
Identities = 59/144 (40%), Positives = 98/144 (68%), Gaps = 3/144 (2%)
Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+
Sbjct: 3 LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV 62
Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
++ +V INP+++ S + +EGCLSIP+ RA V R+ + +R +D + +
Sbjct: 63 SENRD--ERLVLINPELLEKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 124 IYADGLLATCLQHELDHLNGILFI 147
+ ADGLLA C+QHE+DHL G LF+
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFM 143
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A
{Staphylococcus aureus} (A:)
Length = 194
Score = 154 bits (389), Expect = 7e-39
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYST------------DGIGL 47
+ K ++ P LR+ + +E + + + M E + ++ G+GL
Sbjct: 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGL 72
Query: 48 AAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRAD 103
AA QI + R++ + + D + + +NPKI++ S + EG LS+ +
Sbjct: 73 AAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGL 132
Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
V R IT++ D + G A QHE+DHLNG++F DH+ +
Sbjct: 133 VHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAV 192
Query: 164 KL 165
++
Sbjct: 193 EV 194
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus
faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A (A:)
Length = 188
Score = 153 bits (387), Expect = 1e-38
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGL 47
+ K ++ +P LR V+ + I + L ++ML + ++ +GL
Sbjct: 2 ITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGL 61
Query: 48 AAVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSVY--QEGCLSIP-DY 100
AA Q+ + R++ + + + V NPKI++ S EGCLS+ D
Sbjct: 62 AAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDV 121
Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
V R ITV Y D + + A +QHE+DH+NGI+F DH+++ + +
Sbjct: 122 PGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALKE 181
Query: 161 KMSKL 165
+ +
Sbjct: 182 GVLVI 186
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus}
(A:1-156)
Length = 156
Score = 144 bits (364), Expect = 8e-36
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 15/159 (9%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
MV P+ ++ DP+LRR +RP+E + I L ++MLE M+ G+GLAA QIG+ RL V
Sbjct: 1 MVY-PIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFV 58
Query: 61 IDLQDHAHR-----------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSA 108
+ V NP I + EG LS+P ++ V R+
Sbjct: 59 AVEYADEPEGEEERPLRELVRRVYVVANPVITY-REGLVEGTEGXLSLPGLYSEEVPRAE 117
Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
I V Y D + +++ +G +A QHE+DHL+GILF
Sbjct: 118 RIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFF 156
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent
oxidoreductase; 1.30A {Burkholderia SP} (A:143-274)
Length = 132
Score = 27.4 bits (60), Expect = 1.3
Identities = 7/61 (11%), Positives = 11/61 (18%)
Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
G+G V VI + + + D
Sbjct: 15 GMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 74
Query: 104 V 104
V
Sbjct: 75 V 75
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli}
(A:137-268)
Length = 132
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
G+GL A Q +I A + + + + + + +
Sbjct: 16 GVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 75
Query: 104 V 104
V
Sbjct: 76 V 76
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH
complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB:
3jyl_A* (A:137-268)
Length = 132
Score = 24.7 bits (53), Expect = 7.2
Identities = 7/61 (11%), Positives = 13/61 (21%)
Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
G+G A Q +I + + V + +
Sbjct: 16 GVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 75
Query: 104 V 104
V
Sbjct: 76 V 76
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum
irakense} (A:1-16,A:198-408)
Length = 227
Score = 24.5 bits (53), Expect = 8.0
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 11/76 (14%)
Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
I D A + I D F A R+ T + C +
Sbjct: 27 ITYNDDALVHVAELLS--DIAAGRDGFGFVPP---------AIRTRALEATNAAIHCIVE 75
Query: 121 HQIIYADGLLATCLQH 136
Q++ L QH
Sbjct: 76 TQVVQDGKRLGWGQQH 91
>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione
disulfide, disulfide bond oxidoreductase; HET: GDS;
2.30A {Escherichia coli} (A:1-87)
Length = 87
Score = 24.4 bits (53), Expect = 8.1
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIPDYRA 102
L + + YRL+ +DL + + I+P KI D LS+ + A
Sbjct: 17 LFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGA 74
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} (A:166-340)
Length = 175
Score = 24.3 bits (52), Expect = 9.3
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 4/93 (4%)
Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRA 102
+GLAA L V+ + D + I S D ++++ + +
Sbjct: 31 PVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 90
Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
D A V + H+ +
Sbjct: 91 DC---AVDAVGFEARGHGHEGAKHEAPATVLNS 120
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.327 0.143 0.418
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,312,808
Number of extensions: 57349
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 33
Length of query: 170
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 88
Effective length of database: 2,184,039
Effective search space: 192195432
Effective search space used: 192195432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)