RPSBLAST alignment of GI: 254780297 and protein with PDBid: 1lm4
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A* Length = 194
Score = 133 bits (336), Expect = 2e-32
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYST------------DGIGL 47
+ K ++ P LR+ + +E + + + M E + ++ G+GL
Sbjct: 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGL 72
Query: 48 AAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRAD- 103
AA QI + R++ + + D + + + +NPKI++ S + EGCLS+ D A
Sbjct: 73 AAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGL 132
Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
V R IT++ D + G A QHE+DHLNG++F DH+ +
Sbjct: 133 VHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHP 184