BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780297|ref|YP_003064710.1| peptide deformylase
[Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score =  347 bits (890), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV
Sbjct: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ
Sbjct: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD
Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170


>gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 348

 Score = 23.5 bits (49), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNM--LEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +F +PI+   S  I  + + ++++I ++    V+   DG  +A + +G+LY L +  L+ 
Sbjct: 69  VFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEI 128

Query: 66  HA 67
           + 
Sbjct: 129 YG 130


>gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 666

 Score = 23.1 bits (48), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 33  DNMLEVMYSTDGIGLAA 49
           DN+L++ +  +G+GLA+
Sbjct: 136 DNLLQMFFGWEGVGLAS 152


>gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62]
          Length = 296

 Score = 22.7 bits (47), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 25  NSDIMNLIDNMLEVMYSTDG 44
           N+D  +L+ N+  +  STDG
Sbjct: 87  NTDFQSLVSNIAGIALSTDG 106


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score = 22.7 bits (47), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 23  KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           KIN  ++ L   + E+M+ST G+G  A+   ++ RL
Sbjct: 412 KINK-LLKLHRQVAEMMHSTQGLGGNALTQQIMGRL 446


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 22.3 bits (46), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYST 42
           +  + +R +++    I + ID +LEV++ST
Sbjct: 308 VTEKTTRIVQESAQTISSKIDQLLEVLHST 337


>gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 97

 Score = 21.9 bits (45), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%)

Query: 11 DPILRRVSRPIE----KINSDIMNL 31
          DPILRR+  P++    +INS    L
Sbjct: 71 DPILRRMDGPVKHVERRINSKTTTL 95


>gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 167

 Score = 21.9 bits (45), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 65  DHAHRKNPMVFINPKIITFSDD 86
           D + +KN +V   P I+ FS+D
Sbjct: 107 DTSGKKNVVVIREPDILPFSED 128


>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 21.9 bits (45), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIIT 82
           YR++   L+  AHR  P++  NP I+ 
Sbjct: 142 YRML---LERFAHRHIPLICANPDIVA 165


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.143    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,642
Number of Sequences: 1233
Number of extensions: 4169
Number of successful extensions: 20
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 11
length of query: 170
length of database: 328,796
effective HSP length: 68
effective length of query: 102
effective length of database: 244,952
effective search space: 24985104
effective search space used: 24985104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 35 (18.1 bits)