HHsearch alignment for GI: 254780298 and conserved domain: PRK09541
>PRK09541 emrE multidrug efflux protein; Reviewed.
Probab=99.96 E-value=1.9e-28 Score=156.39 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 2 ~~wl~L~~AI~~EV~gt~~lK~S~-------------GFt~~~ps~~~~~~y~~sf~~Ls~alk~ipvgvaYAiWsG~Gi 68 (110)
T PRK09541 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 268999999999999998769866-------------9866457999999999999999999963883568999987899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 69 ~~~~iig~~~f~e~~~~~~~lGi~lIi~Gvv~lnL~s 105 (110)
T PRK09541 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999679897999999999999898410035