HHsearch alignment for GI: 254780298 and conserved domain: TIGR00776
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=95.61 E-value=0.1 Score=26.10 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHH
Q ss_conf 45666679999999999999999999997033899999999999999999999938999-------98999999999999
Q gi|254780298|r 37 TRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPF-------YWTTAIGIMFVMIG 109 (118)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~-------~~~~~~Gi~lIi~G 109 (118)
T Consensus 62 F~l~~~~~gl~sG~~WalGQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiG 141 (336)
T TIGR00776 62 FSLTIFLVGLISGAFWALGQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIG 141 (336)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 12477888999999999875458777764020220145664899987877530122447631013054999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999872
Q gi|254780298|r 110 ITLISFH 116 (118)
Q Consensus 110 vili~~~ 116 (118)
T Consensus 142 v~lts~~ 148 (336)
T TIGR00776 142 VYLTSIS 148 (336)
T ss_pred HHHHHHH
T ss_conf 9997302