HHsearch alignment for GI: 254780298 and conserved domain: TIGR00950
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=98.53 E-value=5.1e-06 Score=47.05 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHH------------------------HHHHHHH--HHHHHHHHHHHH
Q ss_conf 999999999999999999953022222-1211223------------------------4566667--999999999999
Q gi|254780298|r 3 WIALLANVALGVLSSVFIKMSIIPPEA-PPHFADS------------------------TRFSDGK--LFWLGFFFYAIS 55 (118)
Q Consensus 3 wl~l~~~i~~~~~g~i~lK~~~~~~~~-~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~s 55 (118)
T Consensus 141 ~~~~~~s~~~~A~g~v~~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~~~~g~~~yLg~~~t~l~ 220 (275)
T TIGR00950 141 LLLGLLSGISFALGTVLAKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATSLQWGALLYLGLIGTLLA 220 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999875206798742678999999999999999999845650111102469999999999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999970338999999999999999999999389999899999999999999
Q gi|254780298|r 56 FFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGIT 111 (118)
Q Consensus 56 ~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvi 111 (118)
T Consensus 221 y~l~~~Gl~~V~~~~a-~~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~l 275 (275)
T TIGR00950 221 YFLWNKGLTLVDPSAA-SILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAVL 275 (275)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9999987643470465-776646689999999999730467989999999999829