HHsearch alignment for GI: 254780298 and conserved domain: TIGR03340
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.38 E-value=6.1e-12 Score=75.91 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH---HHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211---223------------------456666799999999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHF---ADS------------------TRFSDGKLFWLGFFFYAISFFTYI 60 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~~~~~~~~s~~~~~ 60 (118)
T Consensus 2 a~~lvL~aA~lHA~WN~l~K~~~d~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~p~p~~~~w~~i~~S~~~h~~Y~~~L~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999995488810899999999999999999999998636899867899999999999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 61 ~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 82 ~aY~~gdls~vYPiaRgs-Pllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~~~ 136 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHCCCCCEECHHHCCC-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998358841111064157-6999999999974768898999999999999998401