Query gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 118
No_of_seqs 109 out of 1140
Neff 6.8
Searched_HMMs 23785
Date Mon May 30 07:52:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780298.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 100.0 3.5E-29 1.5E-33 158.9 8.4 104 1-117 2-105 (137)
2 3b5d_A Multidrug transporter E 99.9 4E-27 1.7E-31 148.9 13.5 104 1-117 2-105 (110)
3 2cly_A ATP synthase B chain, m 7.4 74 0.0031 11.1 0.0 67 21-96 13-79 (214)
4 1j0g_A Hypothetical protein 18 5.3 1.2E+02 0.0049 10.1 1.1 11 14-24 69-79 (92)
5 2akh_Z Preprotein translocase 4.1 1.6E+02 0.0066 9.5 4.8 20 1-20 1-20 (111)
6 1afo_A Glycophorin A; integral 2.8 2.5E+02 0.011 8.5 2.9 14 6-19 15-28 (40)
7 1k8k_G P16, ARP2/3 complex 16 2.4 2E+02 0.0086 8.9 -0.8 22 1-22 107-128 (151)
8 2knc_A Integrin alpha-IIB; tra 2.3 3.1E+02 0.013 8.0 2.3 25 93-117 6-30 (54)
9 3e86_A Potassium channel prote 2.0 3.7E+02 0.015 7.7 2.6 20 96-115 56-75 (96)
10 2a2u_A Protein (alpha-2U-globu 2.0 3.8E+02 0.016 7.6 0.0 15 1-15 1-15 (181)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.96 E-value=3.5e-29 Score=158.88 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
++|+++++++++|+.|+.++|.+. ++++..|.+..+.+|++|++++..++|++|+|+|||+|+|.|+
T Consensus 2 ~~wl~L~~Ai~~EV~gt~~LK~s~-------------gft~~~p~i~~i~~y~~sf~~ls~alk~iplgvAYAiWsGlG~ 68 (137)
T 2i68_A 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp --CHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 178999999999999999999871-------------8874889999999999999999999973984227999988999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|+.|++|+.+|+.||+++|+.+
T Consensus 69 v~~~lig~~~f~E~ls~~~ilgi~LIi~GVv~Lnl~s 105 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999479998999999999999998222057
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.95 E-value=4e-27 Score=148.88 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
.+|+++..++++|+.|+..+|.+. ++++..|.+..+.+|++|++++..++|++|+|+||++|+|.|+
T Consensus 2 ~~w~~L~~Ai~~Ev~~t~~lk~s~-------------gf~~~~~~~~~~~~~~~sf~~ls~al~~lp~gvaYAiW~G~G~ 68 (110)
T 3b5d_A 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 068999999999999999999873-------------8975789999999999999999999964885137998998899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|+.|++|+.+|++|++++|+.|
T Consensus 69 v~~~l~g~~~f~e~~~~~~~~gi~lIi~Gvv~l~l~s 105 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999379998999999999999998300146
No 3
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=7.39 E-value=74 Score=11.08 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9530222221211223456666799999999999999999999970338999999999999999999999389999
Q gi|254780298|r 21 KMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFY 96 (118)
Q Consensus 21 K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~ 96 (118)
++|+.+.+++..+..-.|.+.+.-+.+|+..|.+|==.|..- --+|.+++++...++.+-+++.++.
T Consensus 13 r~~~~p~~~~~~~~~~tg~tgpy~~~~gl~~~l~skei~v~~---------~ef~~~lsflif~~~~~k~~g~~i~ 79 (214)
T 2cly_A 13 RFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVIT---------PETFSAISTIGFLVYIVKKYGASVG 79 (214)
T ss_dssp ---------------------------------------------------------------------------C
T ss_pred CEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEC---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 013371899976242447752189999999999778604887---------4999999999999999999889999
No 4
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=5.26 E-value=1.2e+02 Score=10.10 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=8.2
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999530
Q gi|254780298|r 14 VLSSVFIKMSI 24 (118)
Q Consensus 14 ~~g~i~lK~~~ 24 (118)
.+|++++|+|.
T Consensus 69 tAg~vFlkhGs 79 (92)
T 1j0g_A 69 TAGNVFLKHGS 79 (92)
T ss_dssp BHHHHHHHTCS
T ss_pred CCCHHHHHCCC
T ss_conf 33310112686
No 5
>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z
Probab=4.09 E-value=1.6e+02 Score=9.49 Aligned_cols=20 Identities=20% Similarity=0.620 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFI 20 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~l 20 (118)
++|...+.-......|+...
T Consensus 1 ~Kw~~~~~l~~~~i~~~~~f 20 (111)
T 2akh_Z 1 MKWVVVVALLLVAIVGNYLY 20 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 90799999999999999999
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=2.75 E-value=2.5e+02 Score=8.46 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780298|r 6 LLANVALGVLSSVF 19 (118)
Q Consensus 6 l~~~i~~~~~g~i~ 19 (118)
++.++..++.|+++
T Consensus 15 ii~gvmagvigtil 28 (40)
T 1afo_A 15 IIFGVMAGVIGTIL 28 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999998999999
No 7
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3dxk_G* 3dxm_G*
Probab=2.41 E-value=2e+02 Score=8.92 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999999999999999995
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKM 22 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~ 22 (118)
|+|+|=-.+.-.+..+++++++
T Consensus 107 MKYiYkGm~~p~~~~~~~LL~W 128 (151)
T 1k8k_G 107 MKYIYKGFESPSDNSSAVLLQW 128 (151)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHH
T ss_conf 9999974258886510599999
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=2.30 E-value=3.1e+02 Score=8.00 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999899999999999999998724
Q gi|254780298|r 93 EPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 93 E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
|+-+...|+=+.-++.|+.++++-+
T Consensus 6 e~~~vP~WiIivsv~~GlLlL~ll~ 30 (54)
T 2knc_A 6 EERAIPIWWVLVGVLGGLLLLTILV 30 (54)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 7788873046999999999999999
No 9
>3e86_A Potassium channel protein; non-selective cation channel, membrane protein, tetrameric cation channel family, 2-transmembrane helix channels; 1.60A {Bacillus cereus} PDB: 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A
Probab=2.01 E-value=3.7e+02 Score=7.67 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999987
Q gi|254780298|r 96 YWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 96 ~~~~~~Gi~lIi~Gvili~~ 115 (118)
+..|..++..++.|+.++..
T Consensus 56 ~~gr~~~i~~~l~G~~~~~~ 75 (96)
T 3e86_A 56 DFGKIFTILYIFIGIGLVFG 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 64899999999999999999
No 10
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=1.96 E-value=3.8e+02 Score=7.60 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 989999999999999
Q gi|254780298|r 1 MKWIALLANVALGVL 15 (118)
Q Consensus 1 M~wl~l~~~i~~~~~ 15 (118)
|+|+++.++..+...
T Consensus 1 ~~~~~~~~~lgl~l~ 15 (181)
T 2a2u_A 1 MKLLLLLLCLGLTLV 15 (181)
T ss_dssp ---------------
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 973135779999866
Done!