Query gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 118 No_of_seqs 109 out of 1140 Neff 6.8 Searched_HMMs 13730 Date Wed Jun 1 03:14:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780298.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1j0ga_ d.15.1.6 (A:) Hypothet 5.1 69 0.005 10.1 1.1 11 14-24 69-79 (92) 2 d1xrsb2 d.230.4.1 (B:33-84) D- 2.7 1.5E+02 0.011 8.4 1.1 16 12-27 17-32 (52) 3 d2axtj1 f.23.32.1 (J:7-40) Pho 2.0 2.1E+02 0.015 7.7 2.2 14 80-93 13-26 (34) 4 d1r3jc_ f.14.1.1 (C:) Potassiu 1.7 2.7E+02 0.019 7.2 3.1 40 76-116 43-85 (103) 5 d1l7va_ f.22.1.1 (A:) ABC tran 1.7 2.7E+02 0.02 7.2 8.9 29 4-32 62-90 (324) 6 d2j8cl1 f.26.1.1 (L:1-281) L ( 1.5 3E+02 0.022 6.9 4.8 34 83-116 157-190 (281) 7 d1jb0l_ f.31.1.1 (L:) Photosys 1.5 3.1E+02 0.022 6.9 6.0 13 6-18 84-96 (151) 8 d2axtb1 f.55.1.1 (B:2-489) Pho 1.4 3.2E+02 0.023 6.8 3.7 24 92-115 129-152 (488) 9 d2vv5a3 f.34.1.1 (A:27-112) Me 1.4 3.2E+02 0.023 6.8 6.8 73 4-86 10-82 (86) 10 d2axti1 f.23.37.1 (I:1-35) Pho 1.4 3.4E+02 0.025 6.7 1.8 15 78-92 8-22 (35) No 1 >d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]} Probab=5.11 E-value=69 Score=10.05 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=8.2 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999530 Q gi|254780298|r 14 VLSSVFIKMSI 24 (118) Q Consensus 14 ~~g~i~lK~~~ 24 (118) .+|++++|+|. T Consensus 69 tAg~vFlKhGs 79 (92) T d1j0ga_ 69 TAGNVFLKHGS 79 (92) T ss_dssp BHHHHHHHTCS T ss_pred CCCHHHHHCCC T ss_conf 23310011686 No 2 >d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]} Probab=2.72 E-value=1.5e+02 Score=8.43 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 9999999999530222 Q gi|254780298|r 12 LGVLSSVFIKMSIIPP 27 (118) Q Consensus 12 ~~~~g~i~lK~~~~~~ 27 (118) -|++-|+..|+|.++. T Consensus 17 ~eAAk~la~kMGl~~p 32 (52) T d1xrsb2 17 AEAAKQIALKMGLEEP 32 (52) T ss_dssp HHHHHHHHHTTSSCCC T ss_pred HHHHHHHHHHHCCCCH T ss_conf 9999999998289960 No 3 >d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]} Probab=2.04 E-value=2.1e+02 Score=7.71 Aligned_cols=14 Identities=0% Similarity=0.157 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999999389 Q gi|254780298|r 80 IIIATCLSSLIWDE 93 (118) Q Consensus 80 ~v~~~~~~~~~f~E 93 (118) +....+.|.+|++. T Consensus 13 ~~vi~~vG~FfYGs 26 (34) T d2axtj1 13 MGVIVIVGLFFYGA 26 (34) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHEEEEEEEE T ss_conf 30675201234440 No 4 >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Probab=1.66 E-value=2.7e+02 Score=7.19 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999938999---989999999999999999872 Q gi|254780298|r 76 TSAIIIIATCLSSLIWDEPF---YWTTAIGIMFVMIGITLISFH 116 (118) Q Consensus 76 s~~~~v~~~~~~~~~f~E~~---~~~~~~Gi~lIi~Gvili~~~ 116 (118) .+.+...+++.. .=|||-. +..|++.+..++.|+.+.++. T Consensus 43 ~aly~~~vT~tT-vGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~ 85 (103) T d1r3jc_ 43 RALWWSVETATT-VGYGDLYPVTLWGRCVAVVVMVAGITSFGLV 85 (103) T ss_dssp HHHHHHHHHHTT-CCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHEEEECC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 513441246334-5667653588617999999999999999999 No 5 >d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]} Probab=1.65 E-value=2.7e+02 Score=7.17 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99999999999999999953022222121 Q gi|254780298|r 4 IALLANVALGVLSSVFIKMSIIPPEAPPH 32 (118) Q Consensus 4 l~l~~~i~~~~~g~i~lK~~~~~~~~~~~ 32 (118) ..++.+..+...|.++|..-.|+..+..- T Consensus 62 ~a~l~Ga~La~sG~~lQ~~~rNpLA~P~i 90 (324) T d1l7va_ 62 AVLLVGAALAISGAVMQALFENPLAEPGL 90 (324) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCTTT T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 99999999999999999981798878367 No 6 >d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]} Probab=1.49 E-value=3e+02 Score=6.91 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.2 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999938999989999999999999999872 Q gi|254780298|r 83 ATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118) Q Consensus 83 ~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118) +...|.-.-+=..++.+.+++++...+..+.+++ T Consensus 157 ~~~fs~~ygN~~YNPfHmlsI~fl~gsaLl~AmH 190 (281) T d2j8cl1 157 VSNTGYTYGNFHYNPAHMIAISFFFTNALALALH 190 (281) T ss_dssp HHHHHHHTSSGGGCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHH T ss_conf 8877867242666789999999999879999863 No 7 >d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]} Probab=1.47 E-value=3.1e+02 Score=6.87 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780298|r 6 LLANVALGVLSSV 18 (118) Q Consensus 6 l~~~i~~~~~g~i 18 (118) +++++++..-++. T Consensus 84 ~Ilt~~L~lYg~~ 96 (151) T d1jb0l_ 84 LVATACLAAYGLV 96 (151) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCC T ss_conf 9999999996266 No 8 >d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]} Probab=1.42 E-value=3.2e+02 Score=6.79 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=0.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 899998999999999999999987 Q gi|254780298|r 92 DEPFYWTTAIGIMFVMIGITLISF 115 (118) Q Consensus 92 ~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118) ++..+..|++|+-++..|+.++.. T Consensus 129 ~~~~d~~kilGihL~~lgll~~~f 152 (488) T d2axtb1 129 EPALDLPKMFGIHLFLAGLLCFGF 152 (488) T ss_dssp SBCCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHCCHHHHHHHHHHHHH T ss_conf 511040544045989999999999 No 9 >d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Probab=1.41 E-value=3.2e+02 Score=6.78 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999953022222121122345666679999999999999999999997033899999999999999 Q gi|254780298|r 4 IALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIA 83 (118) Q Consensus 4 l~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~ 83 (118) +.+.++....-.-+-..+...++.+..++..+ .+..+.-|..-......+++....+.. |..++.|...+ T Consensus 10 ~il~i~~~i~~~i~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~i~~i~~~~~L~~~Gi~~t-~l~a~~G~~gv 79 (86) T d2vv5a3 10 AIIIVGLIIARMISNAVNRLMISRKIDATVAD---------FLSALVRYGIIAFTLIAALGRVGVQTA-SVIAVLGAAGL 79 (86) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHH---------HHHHHHHHHHHHHHHHHHHHTTTCCST-THHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---------HHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH T ss_conf 99999999999999999999876688858999---------999999999999999999999099889-99999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780298|r 84 TCL 86 (118) Q Consensus 84 ~~~ 86 (118) ++. T Consensus 80 aiG 82 (86) T d2vv5a3 80 VVG 82 (86) T ss_dssp HHH T ss_pred HHH T ss_conf 988 No 10 >d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]} Probab=1.36 E-value=3.4e+02 Score=6.68 Aligned_cols=15 Identities=7% Similarity=0.304 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999999938 Q gi|254780298|r 78 AIIIIATCLSSLIWD 92 (118) Q Consensus 78 ~~~v~~~~~~~~~f~ 92 (118) .|.+.....+.++|| T Consensus 8 Vy~vV~fFv~lFiFG 22 (35) T d2axti1 8 VYIVVTFFVLLFVFG 22 (35) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 166899999999986 Done!