RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (118 letters)



>2i68_A Protein EMRE; transmembrane protein, small-multidrug
           resistance, transporter, homodimer, dual topology,
           transport protein; NMR {Escherichia coli} (A:)
          Length = 137

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 1   MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60
             +I L   +   V+ +  +K S       P                    Y  SF+   
Sbjct: 2   NPYIYLGGAILAEVIGTTLMKFSEGFTRLWP-------------SVGTIICYCASFWLLA 48

Query: 61  MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117
             +A+    IA  + +   I++ + LS   + +       IG+M +  G+ +I+  +
Sbjct: 49  QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105


>3b5d_A Multidrug transporter EMRE; helical membrane protein,
           multidrug resistance transporter, SMR, antiport, inner
           membrane, transmembrane; HET: P4P; 3.80A {Escherichia
           coli K12} PDB: 3b61_A 3b62_A* (A:)
          Length = 110

 Score = 33.8 bits (78), Expect = 0.009
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 1   MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60
             +I L   +   V+ +  +K S               F+           Y  SF+   
Sbjct: 2   NPYIYLGGAILAEVIGTTLMKFS-------------EGFTRLWPSVGTIICYCASFWLLA 48

Query: 61  MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113
             +A+    IA  + +   I++ + LS   + +       IG+M +  G+ +I
Sbjct: 49  QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101


>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB,
           antibiotic; 2.50A {Escherichia coli} (A:290-511)
          Length = 222

 Score = 24.8 bits (54), Expect = 4.6
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 53  AISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFY 96
           A+S F+  +  A  +  ++ TVV    ++IA  + + I D+ F 
Sbjct: 171 ALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFI-DDKFV 213


>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION
          transport, CF(0), stator, transport, acetylation,
          hydrogen ION transport; 2.8A {Bos taurus} (A:)
          Length = 214

 Score = 24.1 bits (52), Expect = 7.4
 Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 8/73 (10%)

Query: 20 IKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAI 79
          ++  +IP E        T  +   +   G   Y +S   Y++          +T    + 
Sbjct: 12 VRFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVI--------TPETFSAIST 63

Query: 80 IIIATCLSSLIWD 92
          I     +      
Sbjct: 64 IGFLVYIVKKYGA 76


>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
          hydrolase, alternative splicing, hydrolase,
          mitochondrion, polymorphism, serine esterase; 2.10A
          {Homo sapiens} (A:1-147)
          Length = 147

 Score = 23.6 bits (51), Expect = 9.7
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 68 VRIAQTVVTSAIIIIATCLSSLIWDEPF 95
           +I +     A  +I        WDEP 
Sbjct: 9  GQIIRVPARXAATLILEPAGRCCWDEPV 36


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.334    0.143    0.459 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 929,279
Number of extensions: 35021
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 21
Length of query: 118
Length of database: 4,956,049
Length adjustment: 70
Effective length of query: 48
Effective length of database: 2,589,699
Effective search space: 124305552
Effective search space used: 124305552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.3 bits)