RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (118 letters)



>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance,
           transporter, homodimer, dual topology, transport
           protein; NMR {Escherichia coli}
          Length = 137

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 1   MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60
             +I L   +   V+ +  +K S               F+           Y  SF+   
Sbjct: 2   NPYIYLGGAILAEVIGTTLMKFS-------------EGFTRLWPSVGTIICYCASFWLLA 48

Query: 61  MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113
             +A+    IA  + +   I++ + LS   + +       IG+M +  G+ +I
Sbjct: 49  QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 54/136 (39%)

Query: 12  LGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLF----WL---------GFFFYA-ISFF 57
           +   +    ++     +A   F         +      WL          +     IS  
Sbjct: 188 IKFSAETLSELIRTTLDAEKVF--------TQGLNILEWLENPSNTPDKDYLLSIPISC- 238

Query: 58  TYIMVV--AHFSV--------------RIA------QTVVTSAIIIIATCLSSLIWDEPF 95
             I V+  AH+ V               +       Q +VT+    IA   S   W+  F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--IAETDS---WES-F 292

Query: 96  YWT--TAIGIMFVMIG 109
           + +   AI ++F  IG
Sbjct: 293 FVSVRKAITVLF-FIG 307



 Score = 28.4 bits (63), Expect = 0.38
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 13  GVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGF 49
           G++++V I  +    ++   F  S R +   LF++G 
Sbjct: 276 GLVTAVAIAET----DSWESFFVSVRKAITVLFFIGV 308


>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug
           resistance transporter, SMR, antiport, inner membrane,
           transmembrane; HET: P4P; 3.80A {Escherichia coli K12}
           PDB: 3b61_A 3b62_A*
          Length = 110

 Score = 33.1 bits (76), Expect = 0.016
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 1   MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60
             +I L   +   V+ +  +K S               F+           Y  SF+   
Sbjct: 2   NPYIYLGGAILAEVIGTTLMKFS-------------EGFTRLWPSVGTIICYCASFWLLA 48

Query: 61  MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113
             +A+    IA  + +   I++ + LS   + +       IG+M +  G+ +I
Sbjct: 49  QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101


>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN
           five-stranded antiparallel beta-sheet, hydrolase; HET:
           BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A*
           1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
          Length = 322

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 7/38 (18%)

Query: 41  DGKLFWLGFF-FYAI-----SFFTYIMVVAHFSVRIAQ 72
            G  +W G   FY I     S   Y M V      +A 
Sbjct: 282 TGYQYWYGLPNFYTITRYNHSTH-YAMAVWQLGQAVAL 318


>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
           2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
          Length = 511

 Score = 24.2 bits (52), Expect = 6.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 52  YAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93
            A+S F+  +  A  +  ++ TVV    ++IA  + + I D+
Sbjct: 459 VALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDK 500


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 23.9 bits (51), Expect = 8.6
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 45  FWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLI 90
            +L F  + +    ++M  A       +  V   +I     L++++
Sbjct: 112 HFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVV 157


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.143    0.459 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,048,803
Number of extensions: 40377
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 27
Length of query: 118
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 38
Effective length of database: 3,753,710
Effective search space: 142640980
Effective search space used: 142640980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.5 bits)