RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (118 letters) >2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Length = 137 Score = 40.1 bits (94), Expect = 1e-04 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%) Query: 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60 +I L + V+ + +K S F+ Y SF+ Sbjct: 2 NPYIYLGGAILAEVIGTTLMKFS-------------EGFTRLWPSVGTIICYCASFWLLA 48 Query: 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 +A+ IA + + I++ + LS + + IG+M + G+ +I Sbjct: 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 35.3 bits (81), Expect = 0.003 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 54/136 (39%) Query: 12 LGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLF----WL---------GFFFYA-ISFF 57 + + ++ +A F + WL + IS Sbjct: 188 IKFSAETLSELIRTTLDAEKVF--------TQGLNILEWLENPSNTPDKDYLLSIPISC- 238 Query: 58 TYIMVV--AHFSV--------------RIA------QTVVTSAIIIIATCLSSLIWDEPF 95 I V+ AH+ V + Q +VT+ IA S W+ F Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--IAETDS---WES-F 292 Query: 96 YWT--TAIGIMFVMIG 109 + + AI ++F IG Sbjct: 293 FVSVRKAITVLF-FIG 307 Score = 28.4 bits (63), Expect = 0.38 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Query: 13 GVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGF 49 G++++V I + ++ F S R + LF++G Sbjct: 276 GLVTAVAIAET----DSWESFFVSVRKAITVLFFIGV 308 >3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Length = 110 Score = 33.1 bits (76), Expect = 0.016 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%) Query: 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60 +I L + V+ + +K S F+ Y SF+ Sbjct: 2 NPYIYLGGAILAEVIGTTLMKFS-------------EGFTRLWPSVGTIICYCASFWLLA 48 Query: 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 +A+ IA + + I++ + LS + + IG+M + G+ +I Sbjct: 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 >1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A* Length = 322 Score = 26.5 bits (58), Expect = 1.4 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 7/38 (18%) Query: 41 DGKLFWLGFF-FYAI-----SFFTYIMVVAHFSVRIAQ 72 G +W G FY I S Y M V +A Sbjct: 282 TGYQYWYGLPNFYTITRYNHSTH-YAMAVWQLGQAVAL 318 >1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1 Length = 511 Score = 24.2 bits (52), Expect = 6.7 Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 52 YAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93 A+S F+ + A + ++ TVV ++IA + + I D+ Sbjct: 459 VALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDK 500 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Score = 23.9 bits (51), Expect = 8.6 Identities = 7/46 (15%), Positives = 18/46 (39%) Query: 45 FWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLI 90 +L F + + ++M A + V +I L++++ Sbjct: 112 HFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVV 157 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.334 0.143 0.459 Gapped Lambda K H 0.267 0.0513 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,048,803 Number of extensions: 40377 Number of successful extensions: 174 Number of sequences better than 10.0: 1 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 27 Length of query: 118 Length of database: 5,693,230 Length adjustment: 80 Effective length of query: 38 Effective length of database: 3,753,710 Effective search space: 142640980 Effective search space used: 142640980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 50 (23.5 bits)