RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (118 letters)



>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 26.3 bits (57), Expect = 0.83
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 7/38 (18%)

Query: 41  DGKLFWLGFF-FYAI-----SFFTYIMVVAHFSVRIAQ 72
            G  +W G   FY I     S   Y M V      +A 
Sbjct: 282 TGYQYWYGLPNFYTITRYNHSTH-YAMAVWQLGQAVAL 318


>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 199

 Score = 24.4 bits (53), Expect = 3.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 53  AISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93
           A+S F+  +  A  +  ++ TVV    ++IA  + + I D+
Sbjct: 148 ALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDK 188


>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 522

 Score = 22.7 bits (48), Expect = 8.1
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 77  SAIIIIATCLSSLIWD 92
             I +  TC++ +I D
Sbjct: 144 DMIAVSTTCMAEVIGD 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.143    0.459 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,561
Number of extensions: 18127
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 21
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.2 bits)