HHsearch alignment for GI: 254780299 and conserved domain: PRK11561
>PRK11561 isovaleryl CoA dehydrogenase; Provisional.
Probab=100.00 E-value=0 Score=1095.81 Aligned_cols=528 Identities=35% Similarity=0.555 Sum_probs=501.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEE
Q ss_conf 62110116788858998001678899999720-42110789999998501899999986343698462017998521365
Q gi|254780299|r 19 SDSLFALNQPPLFIGMNAYSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKV 97 (562)
Q Consensus 19 ~~~~~~~nq~~~~~g~n~~~~D~~l~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v 97 (562)
T Consensus 3 ~~TH~v~Nq~~~~~~~n~~~~D~~L~~a~~r~ga~~~~~~L~~~G~~~Gs~e~~e~~~~An~~~P~L~~~Dr~G~RiD~V 82 (538)
T PRK11561 3 WQTHTVFNQPIPLNNSNLFLSDGALCEAVTREGAGWDSDLLASIGQQLGTAESLELGRLANANPPELLRYDAQGQRLDDV 82 (538)
T ss_pred CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCE
T ss_conf 78732347999976876633588899999974777567999999998677999999998500898501508999867506
Q ss_pred ECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC-HHHHHHHHH
Q ss_conf 6688999999999967962033776666444763799999999983014453122135677899998508-788987301
Q gi|254780299|r 98 EFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTT-PRVHKDWAP 176 (562)
Q Consensus 98 ~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~~~-~e~~~~~lp 176 (562)
T Consensus 83 e~hpawh~Lm~~~~~~g~~~~~w~~~~----~~g~~v~raA~~yL~~q~e~G~~CPltMT~aa~~~L~~~~p~~~~~~~~ 158 (538)
T PRK11561 83 RFHPAWHLLMQGLCANRVHNLAWEEDA----RSGSFVARAARFMLHAQVEAGTLCPITMTFAATPLLLQMLPAPFQDWLT 158 (538)
T ss_pred EECHHHHHHHHHHHHCCCCCCCCCCCC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 657899999999997686555655677----6551999999999851356466682248799999998618398999876
Q ss_pred HHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf 20010005442660015521235544588888786654302786489668984514686342115799970469961799
Q gi|254780299|r 177 KIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCF 256 (562)
Q Consensus 177 ~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~~Gls~F 256 (562)
T Consensus 159 ~l~s~~yD~~~~p~~~K~~~t~Gm~MTEkqGGSDV~an~T~A~~~~~g~YrL~G~KwF~Sa~~~D~~LvLAr~~gGLS~F 238 (538)
T PRK11561 159 PLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDAHLVLAQAKGGLSCF 238 (538)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCHHEEEEEECCCCEEEE
T ss_conf 65335678122786202334432433257767641135259996699819999998885155500058886069955899
Q ss_pred EEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98775898840347886304755456577279998690753007776579999997301333579999999999999999
Q gi|254780299|r 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAI 336 (562)
Q Consensus 257 lVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~ 336 (562)
T Consensus 239 lvPr~~~DG~~N~i~i~RLKdKLG~rs~pSaEve~~gA~a~lvGeegrGv~~I~~M~n~TRl~~ai~sag~mRrAl~~A~ 318 (538)
T PRK11561 239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAI 318 (538)
T ss_pred EEEEECCCCCCCCEEEEEHHHHHCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97503689997855774333321687688289998880799835788578999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99840462224235388889999999999999999999999887201110367776556799999999999999995699
Q gi|254780299|r 337 HYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAM 416 (562)
Q Consensus 337 ~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Ai 416 (562)
T Consensus 319 ~~a~~R~aFG~~L~d~PLm~~~Ladm~le~eaa~aL~~rlA~a~d~~-~~~~e~a~~RllTpiaK~~~~k~a~~~~~Eam 397 (538)
T PRK11561 319 YHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRR-ADAKEALWARLFTPAAKFVICKQGIPFVAEAM 397 (538)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855750575353140599999999999999999999999974137-98678999999999999999712899999999
Q ss_pred HHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHCCC
Q ss_conf 88521300045518898500122322046222789999998312603799999999964254517789--9999873054
Q gi|254780299|r 417 ECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVI--TILRDSISLC 494 (562)
Q Consensus 417 qi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~~~~~~~l~~~l~~~~g~~~~~~~--~~l~~~~~~~ 494 (562)
T Consensus 398 E~~GG~GYiEe~~~pRl~RdA~VnsIWEGT~NV~aLDvLRa~~r~p~~~~~~~~e~~~~~g~~~~~d~~~~~l~~~l~~- 476 (538)
T PRK11561 398 EVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQPGVYDLLSEAFVEVKGQDRHFDRAVRQLQQRLRK- 476 (538)
T ss_pred HHHCCCEEECCCCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf 9846825733785066775180413355677358999999871190389999999987328877899999999988548-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 22137789999999999999999970857999999996400256554511434468899998
Q gi|254780299|r 495 KEDKGLARFLTEKIALASSAAALYRAGMNDIADVFLENRFLDNCHSTHCMLHGRFNAAHIID 556 (562)
Q Consensus 495 ~~~e~~AR~~~e~la~~~~aalL~r~a~~~va~af~~~Rl~~~~~~~~g~l~a~~d~~~~~~ 556 (562)
T Consensus 477 -~~e~~ar~~~~~~a~~~qa~~l~r~~~~~va~afc~~rl~~~~~~---~~~~~~~~~~~~~ 534 (538)
T PRK11561 477 -PAEEQGREITQQLFLLGCGAQMLRYASPPLAQAWCQMMLDTRGGV---RLSEQVQNDLLLR 534 (538)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHH
T ss_conf -607799999999999999999985099999999999971777982---3737777999987