HHsearch alignment for GI: 254780299 and conserved domain: PRK12341

>PRK12341 putative acyl-CoA dehydrogenase; Provisional.
Probab=100.00  E-value=0  Score=459.38  Aligned_cols=327  Identities=19%  Similarity=0.210  Sum_probs=277.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-HCCHHHHHHHHHHHCC-CC
Q ss_conf             999999967962033776666444763799999999983014453122135677899998-5087889873012001-00
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL-MTTPRVHKDWAPKIFS-RE  182 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L-~~~~e~~~~~lp~l~s-~~  182 (562)
T Consensus        41 ~~~~~l~e~Gl~~l~vPee~GG~G--~~~~~~~~v~eelg~~~~~~~~-~~~~~~~~~i~~~gs~eq~~~~l~~~l~~G~  117 (383)
T PRK12341         41 EFMRALADNGISMLGVPEEFGGIP--ADYVTQMLALMEVSKCGAPAFL-ITNGQCIHSMRRFGSAEQLRKTAESTLETGD  117 (383)
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCC--CCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf             999999977888879985458999--8899999999999873677654-3179999999997899999998568872787


Q ss_pred             CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC------CCEE
Q ss_conf             054426600155212355445888887866543027864896689845146863-421157999704699------6179
Q gi|254780299|r  183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG------RVGC  255 (562)
Q Consensus       183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~------Gls~  255 (562)
T Consensus       118 -------------~~~~~a~tEp~~Gsd~~~~~tta~~~~~-~~~lnG~K~~it~a~~Ad~~~v~ar~~~~~~~~~gis~  183 (383)
T PRK12341        118 -------------PAYALALTEPGAGSDNNSATTTYTRKNG-KVYINGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTL  183 (383)
T ss_pred             -------------EEEEEEECCCCCCCCHHHCEEEEEEECC-EEEEECEECCCCCCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf             -------------5799982488877871226257886399-99995635474555568789999535888887654899


Q ss_pred             EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r  256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL  332 (562)
Q Consensus       256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al  332 (562)
T Consensus       184 flV~~~~pG-----v~v~~-~~~~g~~~~~~~~v~f~dv~Vp~~~~lg~~g~g~~~~~~~l~~~rl~~aa~~~G~a~~al  257 (383)
T PRK12341        184 WWVDSSKPG-----IKINP-LHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSTGFAECAF  257 (383)
T ss_pred             EEEECCCCC-----EEEEC-CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998569996-----48704-645688765202342354223611146766728999999776889999998850557667


Q ss_pred             HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r  333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI  412 (562)
Q Consensus       333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~  412 (562)
T Consensus       258 ~~a~~ya~~R~qfG~pi~~~Q~vq~~lad~~~~~e~ar~l~~~aa~~~d~~~~~~-------~~aa~aK~~a~e~a~~v~  330 (383)
T PRK12341        258 EDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIENMRNMVLKVAWQADNGQSLR-------TSAALAKLYCARTAMEVI  330 (383)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHH
T ss_conf             7653457888861985003899999999999999999999999999986899953-------799999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             5699885213000455188985001223220462227899999983126
Q gi|254780299|r  413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG  461 (562)
Q Consensus       413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~  461 (562)
T Consensus       331 ~~a~qi~Gg~G~~~e~~~~r~~Rdar~~~I~~Gt~ei~~~~ia~~vl~~  379 (383)
T PRK12341        331 DDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKD  379 (383)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999963850104554999999984161751778999999999999998