HHsearch alignment for GI: 254780299 and conserved domain: TIGR03204
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=0 Score=454.92 Aligned_cols=347 Identities=15% Similarity=0.131 Sum_probs=270.1
Q ss_pred HHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 43698462017998521365668899999999996796203377666644476379999999998301445312213567
Q gi|254780299|r 78 NYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVT 157 (562)
Q Consensus 78 ~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt 157 (562)
T Consensus 21 ~~v~p~~~~~~~~~~~~----~~~~~~~~~~~l~~~G~~~~~~PeeyGG~G~--~~~~~~iv~EEl~~~~~~~~~~~~~~ 94 (395)
T TIGR03204 21 DNVPADTRQKLVEGRHL----TKDEMVTWWRILNKKGWGVSHWPKQYGGTGW--TSVQHYIFNEELQSAPAPQPLAFGVS 94 (395)
T ss_pred HHCCHHHHHHHHCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 74981144687436788----8588999999999668998999824399998--89999999999735597188999999
Q ss_pred HHHHHHH-H-CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE
Q ss_conf 7899998-5-0878898730120010005442660015521235544588888786654302786489668984514686
Q gi|254780299|r 158 SASMVAL-M-TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL 235 (562)
Q Consensus 158 ~~a~~~L-~-~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~ 235 (562)
T Consensus 95 ~-~~~~i~~~GteeqK~~~Lp~l~~G~~-------------~~~~a~tEP~aGSD~~~~~T~A~~~gd-~~vinG~K~~i 159 (395)
T TIGR03204 95 M-VGPVIYTFGNEEQKKRFLPRIANVDD-------------WWCQGFSEPGSGSDLASLKTKAEKKGD-KWIINGQKTWT 159 (395)
T ss_pred H-HHHHHHHHCCHHHHHHHHHHHHCCCH-------------HHEEEECCCCCCCCCCCCCEEEEECCC-EEEEEEEECCC
T ss_conf 9-99999986989999998899848767-------------766652589888870025657873499-89999674372
Q ss_pred E-CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCH
Q ss_conf 3-42115799970469------9617999877589884034788630475545657727999869075---300777657
Q gi|254780299|r 236 S-SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVS 305 (562)
Q Consensus 236 s-a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G 305 (562)
T Consensus 160 t~a~~Ad~~~v~art~~~~~~~~Gis~flV~~~~~G-----~~v~~~~~~~g--~~~~~~v~f~dv~VP~~~llG~~g~G 232 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKG-----ITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKG 232 (395)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC-----EEECCCCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCCH
T ss_conf 678635520133301687777787123202478997-----37454303577--66645202576201533036877847
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999973013335799999999999999999984046222423538888999999999999999999999988720111
Q gi|254780299|r 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS 385 (562)
Q Consensus 306 ~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~ 385 (562)
T Consensus 233 ~~~~~~~l~~~R~~~a--~~G~a~~al~~a~~ya~~R~~fG~pi~~~q~i~~~lA~m~~~~~a~~l~~~~~~~~~~~~~~ 310 (395)
T TIGR03204 233 WDYAKFLLGNERTGIA--RVGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGK 310 (395)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998999999999--99999999999999999998579651209999999999999999999999999999887469
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCCCC----HHHHHHHCCHHHHHCCCCHHHHH
Q ss_conf 036777655679999999999999999569988521----------3000455----18898500122322046222789
Q gi|254780299|r 386 RSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG----------SGYIEER----SIARHYRESPANSILLGSGNAMV 451 (562)
Q Consensus 386 ~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG----------~Gy~ee~----~leRl~RDA~v~~I~EGt~~I~a 451 (562)
T Consensus 311 ~~-----~~~~~s~~K~~ase~~~~~~~~a~qi~G~~~~~~~ihG~~g~~~~~~~~~~i~r~yrd~r~~~I~eGTsEIqr 385 (395)
T TIGR03204 311 GK-----PNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQR 385 (395)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99-----8699999999999999999999999854210023113667623556657899999986467736543999999
Q ss_pred HHHHHHHC
Q ss_conf 99999831
Q gi|254780299|r 452 LDVLNLLE 459 (562)
Q Consensus 452 ldv~r~l~ 459 (562)
T Consensus 386 ~iIAr~lL 393 (395)
T TIGR03204 386 NIIAKAVL 393 (395)
T ss_pred HHHHHHHC
T ss_conf 99999861