HHsearch alignment for GI: 254780299 and conserved domain: TIGR03207

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00  E-value=0  Score=479.39  Aligned_cols=324  Identities=21%  Similarity=0.235  Sum_probs=281.3

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf             9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE  182 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~  182 (562)
T Consensus        36 e~~~~~~e~G~~gl~vPee~GG~G~--~~~~~~~v~Eelg~~~~~~~~~~~~~~~~~~~l~~~g~~e~k~~~L~~l~~G~  113 (372)
T TIGR03207        36 ELMRDMGEMGFIGPELPEEHGGLGM--GCLAAGVIHEQIARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGE  113 (372)
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf             9999999779987899965689998--99999999999976276366899999999999998398999999879984998


Q ss_pred             CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCEE
Q ss_conf             054426600155212355445888887866543027864896689845146863-42115799970469------96179
Q gi|254780299|r  183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVGC  255 (562)
Q Consensus       183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls~  255 (562)
T Consensus       114 ~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~gd~-~~lnG~K~~it~a~~Ad~~~v~art~~~~~~~~g~s~  179 (372)
T TIGR03207       114 A-------------LFAIALTEPRGGSDAARLRLRAERDGDD-YVLNGEKTSISAADQADAAVVFARTGSEAEGARGISA  179 (372)
T ss_pred             E-------------EEEEEECCCCCCCCCCCCCEEEEEECCE-EEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf             0-------------0699955897777613471499994898-9996424044578767689998631764468783478


Q ss_pred             EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r  256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL  332 (562)
Q Consensus       256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al  332 (562)
T Consensus       180 ~lV~~~~~G-----v~~~~-~~~~g~r~~~~~~l~fddv~Vp~~~llG~~g~G~~~~~~~~~~~r~~~aa~~~G~a~~al  253 (372)
T TIGR03207       180 FLVPMDLPG-----ITRNR-FDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAAL  253 (372)
T ss_pred             EECCCCCCC-----CEEEC-CCCCCCCCCCCCEEEECCEEECHHHCCCCCCCHHHHHHHCCHHHHHHHCHHHHHHHHHHH
T ss_conf             832589998-----35525-446787777865167688756476437876642899975115899985866668999999


Q ss_pred             HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r  333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI  412 (562)
Q Consensus       333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~  412 (562)
T Consensus       254 ~~a~~y~~~R~qfG~~I~~~Q~v~~~ladm~~~ieaar~~~~~Aa~~~d~g~~~~~~-------aa~aK~~a~e~a~~~~  326 (372)
T TIGR03207       254 DETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSE-------AAMCKWWAPKLAYDVI  326 (372)
T ss_pred             HHHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHHHHHHH
T ss_conf             999987640002796603159999999999999999999999999999688997699-------9999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             5699885213000455188985001223220462227899999983
Q gi|254780299|r  413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL  458 (562)
Q Consensus       413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l  458 (562)
T Consensus       327 ~~a~qi~Gg~g~~~~-~~er~~Rdar~~~i~~Gt~ei~~~~i~r~~  371 (372)
T TIGR03207       327 HQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARHR  371 (372)
T ss_pred             HHHHHHHCCHHHCCH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf             999998187664562-999999986578752059999999997306