HHsearch alignment for GI: 254780299 and conserved domain: TIGR03207
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=0 Score=479.39 Aligned_cols=324 Identities=21% Similarity=0.235 Sum_probs=281.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
T Consensus 36 e~~~~~~e~G~~gl~vPee~GG~G~--~~~~~~~v~Eelg~~~~~~~~~~~~~~~~~~~l~~~g~~e~k~~~L~~l~~G~ 113 (372)
T TIGR03207 36 ELMRDMGEMGFIGPELPEEHGGLGM--GCLAAGVIHEQIARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGE 113 (372)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 9999999779987899965689998--99999999999976276366899999999999998398999999879984998
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCEE
Q ss_conf 054426600155212355445888887866543027864896689845146863-42115799970469------96179
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVGC 255 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls~ 255 (562)
T Consensus 114 ~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~gd~-~~lnG~K~~it~a~~Ad~~~v~art~~~~~~~~g~s~ 179 (372)
T TIGR03207 114 A-------------LFAIALTEPRGGSDAARLRLRAERDGDD-YVLNGEKTSISAADQADAAVVFARTGSEAEGARGISA 179 (372)
T ss_pred E-------------EEEEEECCCCCCCCCCCCCEEEEEECCE-EEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 0-------------0699955897777613471499994898-9996424044578767689998631764468783478
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
T Consensus 180 ~lV~~~~~G-----v~~~~-~~~~g~r~~~~~~l~fddv~Vp~~~llG~~g~G~~~~~~~~~~~r~~~aa~~~G~a~~al 253 (372)
T TIGR03207 180 FLVPMDLPG-----ITRNR-FDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAAL 253 (372)
T ss_pred EECCCCCCC-----CEEEC-CCCCCCCCCCCCEEEECCEEECHHHCCCCCCCHHHHHHHCCHHHHHHHCHHHHHHHHHHH
T ss_conf 832589998-----35525-446787777865167688756476437876642899975115899985866668999999
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
T Consensus 254 ~~a~~y~~~R~qfG~~I~~~Q~v~~~ladm~~~ieaar~~~~~Aa~~~d~g~~~~~~-------aa~aK~~a~e~a~~~~ 326 (372)
T TIGR03207 254 DETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSE-------AAMCKWWAPKLAYDVI 326 (372)
T ss_pred HHHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHHHHHHH
T ss_conf 999987640002796603159999999999999999999999999999688997699-------9999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5699885213000455188985001223220462227899999983
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
T Consensus 327 ~~a~qi~Gg~g~~~~-~~er~~Rdar~~~i~~Gt~ei~~~~i~r~~ 371 (372)
T TIGR03207 327 HQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARHR 371 (372)
T ss_pred HHHHHHHCCHHHCCH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 999998187664562-999999986578752059999999997306