HHsearch alignment for GI: 254780299 and conserved domain: cd00567
>cd00567 ACAD Acyl-CoA dehydrogenase (ACAD). Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD
Probab=100.00 E-value=0 Score=401.52 Aligned_cols=324 Identities=27% Similarity=0.317 Sum_probs=283.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
T Consensus 34 ~~~~~l~~~Gl~~~~~p~~~GG~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~ 110 (369)
T cd00567 34 ELLAELGLLGLLGPTVPGGYGGGGLDL--L-ELAIEEELARADAAAALLLLGTLLGAALLLAYGTEEQKERYLPPLASGE 110 (369)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCH--H-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 999999984899679861249998469--9-9999999977674069999999999999998399999999989984899
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC------CCEE
Q ss_conf 0544266001552123554458888878665430278648966898451468634-21157999704699------6179
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG------RVGC 255 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~------Gls~ 255 (562)
T Consensus 111 -------------~~~~~a~sE~~~g~~~~~~~t~a~~~~gg-~~l~G~k~~~s~~~~ad~~~v~a~~~~~~~~~~~~~~ 176 (369)
T cd00567 111 -------------AIAAFALTEPGAGSDLAGIRTTARKDGDG-YVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISA 176 (369)
T ss_pred -------------EEEEEEECCCCCCCCCCCEEEEEEEECCE-EEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf -------------38999725898788855414699997998-9999999986220026751688751687678885689
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
T Consensus 177 ~lv~~~~~g-----v~~~~~~~~~G~r~t~s~~v~~~~v~Vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~lG~a~~al 251 (369)
T cd00567 177 FLVPADTPG-----VTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAAL 251 (369)
T ss_pred EEEECCCCC-----EEEEECCCCCCCCCCCCCCCEECCEEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999516896-----688631355677654444211056787636503641037999998557779999999987778769
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
T Consensus 252 ~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~~~~a~~~~~~aa~~~d~~~~~------~~~~~~~aK~~a~~~a~~~~ 325 (369)
T cd00567 252 DEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDE------ARLEAAMAKLFATEAAREVA 325 (369)
T ss_pred HHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHHHH
T ss_conf 999999873523797044099999999999999999999999999999779986------47999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 56998852130004551889850012232204622278999999
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLN 456 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r 456 (562)
T Consensus 326 ~~~~~~~Gg~g~~~~~~l~r~~Rdar~~~~~~G~~~~~~~~~~~ 369 (369)
T cd00567 326 DLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 369 (369)
T ss_pred HHHHHHHCHHHHCCCCHHHHHHHHHHCCEECCCHHHHHHHHHCC
T ss_conf 99999728787666868999999863151516889999998677