>cd01150 AXO Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

Probab=100.00 E-value=1.7e-34 Score=249.58 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=245.2 Q ss_pred CCCCCCCCHHHHHHH-HHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECC Q ss_conf 445312213567789-99985--087889873012001000544266001552123554458888878665430278648 Q gi|254780299|r 146 LEAGHLMSPSVTSAS-MVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKIS 222 (562) Q Consensus 146 ~~~g~~cp~~mt~~a-~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~g 222 (562) T Consensus 94 ~d~~~~~~~~vh~~mF~~tI~~lGT~eq~~~wl~~~~~~~-------------i~G~yaqTELGHGSnv~gleTTAtyD~ 160 (610) T cd01150 94 YDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLE-------------IIGCFAQTELGHGSNLQGLETTATYDP 160 (610) T ss_pred CCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-------------EEEEEEECCCCCCCCCCCCEEEEEECC T ss_conf 4811150134308769999986089999999986885386-------------220110002344444567544899868 Q ss_pred C-CEEEEC-----CEEEEEEC-C-CCCEEEEEEEC--C---CCCEEEEEECCCCCC--CCCCEEEEEECCCCCCCCCCEE Q ss_conf 9-668984-----51468634-2-11579997046--9---961799987758988--4034788630475545657727 Q gi|254780299|r 223 D-GIYCLS-----GHKWFLSS-P-MSDAFIMLAQV--E---GRVGCFLVPRLLEDG--SPNGLCYQRLKNKIGNRSNATV 287 (562) Q Consensus 223 d-g~y~Ln-----G~Kwf~sa-~-~ad~~lVlArt--~---~Gls~FlVp~~~pgg--~~n~v~i~r~~~klG~r~~~t~ 287 (562) T Consensus 161 ~t~EFVinTPt~~A~KwW~G~lg~~athavV~AqL~i~gk~~Gvh~FvVpIRd~~th~~lPGV~vGDiG~K~G~ngvDNG 240 (610) T cd01150 161 LTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNG 240 (610) T ss_pred CCCEEEECCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCE T ss_conf 88978878999123225466533567779999999889823441248987357887888999666247665686777761 Q ss_pred EEEECCEEE---EEE----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC- Q ss_conf 999869075---300----------------777657999999730133357999999999999999999840462224- Q gi|254780299|r 288 ELEFSNTFG---FLL----------------GDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGG- 347 (562) Q Consensus 288 ei~f~~~~~---~ll----------------G~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~- 347 (562) T Consensus 241 ~l~FdnvRIPR~nmL~r~~~V~~dG~y~~~~~~~~~~y~~ml~~~~~gR~~i~~~~~~~l~~a~tIAiRYs~vRrQf~~~ 320 (610) T cd01150 241 FLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPK 320 (610) T ss_pred EEEECEEECCHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC T ss_conf 78844363167998764083589986657888666789999999971077899999999999999999987303014899 Q ss_pred ------CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ------2353888899999999999999999999998872011-----10367776556799999999999999995699 Q gi|254780299|r 348 ------ILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK-----SRSEEAAYARIMAPITKYWCCKMAPAVIAEAM 416 (562) Q Consensus 348 ------~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~-----~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Ai 416 (562) T Consensus 321 ~~~~E~~iidY~tqQ~rLlP~LA~ayA~~~~~~~l~~~~~~~~~~~~~~~~~~l~elHalssglKa~~Tw~a~~~ie~cR 400 (610) T cd01150 321 PSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQECR 400 (610) T ss_pred CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99974223022978988799999999999999999999999998773377456789999999999998999999999999 Q ss_pred HHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 885213000455188985001223220462227899999983126 Q gi|254780299|r 417 ECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562) Q Consensus 417 qi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562) T Consensus 401 ~aCGGhGy~~~sgl~~l~~d~~~~~TyEGDN~VL~qQ~ar~Llk~ 445 (610) T cd01150 401 EACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKK 445 (610) T ss_pred HHCCCCCCHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 744775423223723555246754320200999999999999999

HHsearch alignment for GI: 254780299 and conserved domain: cd01150