HHsearch alignment for GI: 254780299 and conserved domain: cd01151
>cd01151 GCD Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=0 Score=478.05 Aligned_cols=326 Identities=21% Similarity=0.254 Sum_probs=282.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHH-H-CCHHHHHHHHHHHCCC
Q ss_conf 999999967962033776666444763799999999983014453122135677-899998-5-0878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS-ASMVAL-M-TTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~-~a~~~L-~-~~~e~~~~~lp~l~s~ 181 (562)
T Consensus 48 ~~~~~l~e~G~~g~~-peeyGG~--G~~~~~~~~v~eel~~~~~~~~~~~~~~~~l~~~~l~~~gt~~qk~~~Lp~l~~G 124 (386)
T cd01151 48 KIIEEMGELGLLGAT-IKGYGCA--GLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASG 124 (386)
T ss_pred HHHHHHHHCCCCCCC-HHHHCCC--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
T ss_conf 999999976998788-3310899--9999999999999987477631099999899999999849999999758531599
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE-ECCCCCEEEEEEECC--CCCEEEEE
Q ss_conf 005442660015521235544588888786654302786489668984514686-342115799970469--96179998
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL-SSPMSDAFIMLAQVE--GRVGCFLV 258 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~-sa~~ad~~lVlArt~--~Gls~FlV 258 (562)
T Consensus 125 ~~-------------~~a~a~tEp~~Gsd~~~~~t~a~~~g~~-~vlnG~K~~it~a~~Ad~~lv~ar~~~~~~~~~flV 190 (386)
T cd01151 125 EL-------------IGCFGLTEPNHGSDPGGMETRARKDGGG-YKLNGSKTWITNSPIADVFVVWARNDETGKIRGFIL 190 (386)
T ss_pred CE-------------EEEEEECCCCCCCCCCCCEEEEEECCCE-EEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEE
T ss_conf 98-------------9999832898887600082699986985-999878506655544553136643168877538998
Q ss_pred ECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77589884034788630475545657727999869075---300777657999999730133357999999999999999
Q gi|254780299|r 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335 (562)
Q Consensus 259 p~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A 335 (562)
T Consensus 191 ~~~~~G-----v~~~~~~~~~g~r~~~~~~l~fd~v~Vp~~~~l~~-~~g~~~~~~~l~~~R~~~aa~~~G~a~~ald~a 264 (386)
T cd01151 191 ERGMKG-----LSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTA 264 (386)
T ss_pred ECCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 679887-----51244002345556776221247862509980362-166899999999888663241159999999988
Q ss_pred HHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99984046222423538888999999999999999999999988720111036777655679999999999999999569
Q gi|254780299|r 336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEA 415 (562)
Q Consensus 336 ~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~A 415 (562)
T Consensus 265 ~~ya~~R~qFG~pI~~~q~vq~~ladm~~~le~ar~~~~~aa~~~d~g~~~~~-------~as~aK~~ase~a~~v~~~a 337 (386)
T cd01151 265 RQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPE-------QISLLKRNNCGKALEIARTA 337 (386)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf 87788888559810018999999999999999999999999999967999779-------99999999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 988521300045518898500122322046222789999998312
Q gi|254780299|r 416 MECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 416 iqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
T Consensus 338 ~Qi~GG~G~~~e~~~~r~~Rdar~~~i~eGt~ev~r~~iar~l~G 382 (386)
T cd01151 338 REMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 996521533423789999999826352278799999999999758