HHsearch alignment for GI: 254780299 and conserved domain: cd01151

>cd01151 GCD Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00  E-value=0  Score=478.05  Aligned_cols=326  Identities=21%  Similarity=0.254  Sum_probs=282.3

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHH-H-CCHHHHHHHHHHHCCC
Q ss_conf             999999967962033776666444763799999999983014453122135677-899998-5-0878898730120010
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS-ASMVAL-M-TTPRVHKDWAPKIFSR  181 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~-~a~~~L-~-~~~e~~~~~lp~l~s~  181 (562)
T Consensus        48 ~~~~~l~e~G~~g~~-peeyGG~--G~~~~~~~~v~eel~~~~~~~~~~~~~~~~l~~~~l~~~gt~~qk~~~Lp~l~~G  124 (386)
T cd01151          48 KIIEEMGELGLLGAT-IKGYGCA--GLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASG  124 (386)
T ss_pred             HHHHHHHHCCCCCCC-HHHHCCC--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
T ss_conf             999999976998788-3310899--9999999999999987477631099999899999999849999999758531599


Q ss_pred             CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE-ECCCCCEEEEEEECC--CCCEEEEE
Q ss_conf             005442660015521235544588888786654302786489668984514686-342115799970469--96179998
Q gi|254780299|r  182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL-SSPMSDAFIMLAQVE--GRVGCFLV  258 (562)
Q Consensus       182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~-sa~~ad~~lVlArt~--~Gls~FlV  258 (562)
T Consensus       125 ~~-------------~~a~a~tEp~~Gsd~~~~~t~a~~~g~~-~vlnG~K~~it~a~~Ad~~lv~ar~~~~~~~~~flV  190 (386)
T cd01151         125 EL-------------IGCFGLTEPNHGSDPGGMETRARKDGGG-YKLNGSKTWITNSPIADVFVVWARNDETGKIRGFIL  190 (386)
T ss_pred             CE-------------EEEEEECCCCCCCCCCCCEEEEEECCCE-EEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEE
T ss_conf             98-------------9999832898887600082699986985-999878506655544553136643168877538998


Q ss_pred             ECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77589884034788630475545657727999869075---300777657999999730133357999999999999999
Q gi|254780299|r  259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA  335 (562)
Q Consensus       259 p~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A  335 (562)
T Consensus       191 ~~~~~G-----v~~~~~~~~~g~r~~~~~~l~fd~v~Vp~~~~l~~-~~g~~~~~~~l~~~R~~~aa~~~G~a~~ald~a  264 (386)
T cd01151         191 ERGMKG-----LSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTA  264 (386)
T ss_pred             ECCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             679887-----51244002345556776221247862509980362-166899999999888663241159999999988


Q ss_pred             HHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99984046222423538888999999999999999999999988720111036777655679999999999999999569
Q gi|254780299|r  336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEA  415 (562)
Q Consensus       336 ~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~A  415 (562)
T Consensus       265 ~~ya~~R~qFG~pI~~~q~vq~~ladm~~~le~ar~~~~~aa~~~d~g~~~~~-------~as~aK~~ase~a~~v~~~a  337 (386)
T cd01151         265 RQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPE-------QISLLKRNNCGKALEIARTA  337 (386)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf             87788888559810018999999999999999999999999999967999779-------99999999999999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             988521300045518898500122322046222789999998312
Q gi|254780299|r  416 MECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK  460 (562)
Q Consensus       416 iqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r  460 (562)
T Consensus       338 ~Qi~GG~G~~~e~~~~r~~Rdar~~~i~eGt~ev~r~~iar~l~G  382 (386)
T cd01151         338 REMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG  382 (386)
T ss_pred             HHHCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             996521533423789999999826352278799999999999758