HHsearch alignment for GI: 254780299 and conserved domain: cd01152
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=0 Score=477.77 Aligned_cols=346 Identities=17% Similarity=0.197 Sum_probs=292.7
Q ss_pred HHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 63436984620179985213656688999999999967962033776666444763799999999983014453122135
Q gi|254780299|r 76 MANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPS 155 (562)
Q Consensus 76 ~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~ 155 (562)
T Consensus 14 ~~~~i~P~~~~~~~~~~~~~~-~~~~~~~~---~l~e~Gl~gl~vPe~~GG~G~--~~~~~~~v~Eelgr~~~~~~~~~~ 87 (380)
T cd01152 14 LAAHLPPELREESALGYREGR-EDRRRWQR---ALAAAGWAAPGWPKEYGGRGA--SLMEQLIFREEMAAAGAPVPFNQI 87 (380)
T ss_pred HHHHCCCCCCHHHHCCCCCCC-CCHHHHHH---HHHHCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 997688865305635777643-32799999---999679787588824499999--999999999999975897427999
Q ss_pred HHHHHHHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEE
Q ss_conf 6778999985--08788987301200100054426600155212355445888887866543027864896689845146
Q gi|254780299|r 156 VTSASMVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKW 233 (562)
Q Consensus 156 mt~~a~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kw 233 (562)
T Consensus 88 ~~~~~~~~l~~~gs~eqk~~~L~~l~~G~~-------------~~a~a~TEp~~GSd~~~~~T~A~~~g~~-~vlnG~K~ 153 (380)
T cd01152 88 GIDLAGPTILAYGTDEQKRRFLPPILSGEE-------------IWCQGFSEPGAGSDLAGLRTRAVRDGDD-WVVNGQKI 153 (380)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCH-------------HEEEEECCCCCCCCCHHCEEEEEEECCE-EEEEEEEE
T ss_conf 999999999987999999999999958982-------------0498847998877502084599996998-99974641
Q ss_pred EEE-CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCC
Q ss_conf 863-42115799970469------9617999877589884034788630475545657727999869075---3007776
Q gi|254780299|r 234 FLS-SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLN 303 (562)
Q Consensus 234 f~s-a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g 303 (562)
T Consensus 154 ~it~a~~Ad~~~v~art~~~~~~~~gis~flV~~~~pG-----v~~~~~~~~~g--~~~~~~i~fd~v~Vp~~~llG~~g 226 (380)
T cd01152 154 WTSGAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPG-----VTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVN 226 (380)
T ss_pred CCCCHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCC-----CEEECEEECCC--CCCCEEEEECCEEECHHHCCCCCC
T ss_conf 33340004544401202887666686267852279998-----44621032368--877224767773203121478888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57999999730133357999999999999999999840462224235388889999999999999999999999887201
Q gi|254780299|r 304 VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA 383 (562)
Q Consensus 304 ~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~ 383 (562)
T Consensus 227 ~G~~~~~~~l~~~R~~~~----g~a~~~~~~a~~~a~~r~~~G~pl~~~q~vq~~la~m~~~iea~r~l~~~aa~~~d~g 302 (380)
T cd01152 227 DGWKVAMTTLNFERVSIG----GSAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAG 302 (380)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 599999999999999999----9998766366899999986378755689999999999999999999999999999778
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHCCHHHHHCCCCHHHHHHHHH
Q ss_conf 1103677765567999999999999999956998852130004551--------88985001223220462227899999
Q gi|254780299|r 384 KSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS--------IARHYRESPANSILLGSGNAMVLDVL 455 (562)
Q Consensus 384 ~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~--------leRl~RDA~v~~I~EGt~~I~aldv~ 455 (562)
T Consensus 303 ~~~~~-------~~a~aK~~a~e~a~~v~~~a~qi~Gg~G~~~~~~~~~~~~~~~er~~Rdar~~~I~eGt~ei~~~~Ia 375 (380)
T cd01152 303 KPPGA-------EASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIA 375 (380)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 89836-------89999999999999999999998082522566766331002999999752078551309999999999
Q ss_pred HHHC
Q ss_conf 9831
Q gi|254780299|r 456 NLLE 459 (562)
Q Consensus 456 r~l~ 459 (562)
T Consensus 376 r~ll 379 (380)
T cd01152 376 ERLL 379 (380)
T ss_pred HHHC
T ss_conf 8851