HHsearch alignment for GI: 254780299 and conserved domain: cd01154
>cd01154 AidB AidB. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehyrdogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=0 Score=853.53 Aligned_cols=409 Identities=41% Similarity=0.631 Sum_probs=385.7
Q ss_pred CCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCC
Q ss_conf 01678899999720-42110789999998501899999986343698462017998521365668899999999996796
Q gi|254780299|r 37 YSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGL 115 (562)
Q Consensus 37 ~~~D~~l~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl 115 (562)
T Consensus 1 ~~~D~~L~~~l~~~~~~~~~~~l~~~G~~~~~-~~~~~~~~a~~~~P~l~~~d~~G~rid~v~~~~~~~~~~~~~~~~g~ 79 (418)
T cd01154 1 YLDDPVLQQTLRYFGDPEEEPDLSRLGELAGG-ELYELARLADRNPPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGV 79 (418)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCC
T ss_conf 99878899999985882202999999999879-99999987605898875658888868858828799999999997796
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHCCCCCCHHHCCCCCCC
Q ss_conf 203377666644476379999999998301445312213567789999850-8788987301200100054426600155
Q gi|254780299|r 116 HCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMT-TPRVHKDWAPKIFSREYDPTNKAPMQKT 194 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~~-~~e~~~~~lp~l~s~~~~~~~~~~~~k~ 194 (562)
T Consensus 80 ~~~~~~~~~~-----~~~~~~~a~~~l~~~~~~g~~cp~~mT~ga~~~L~~~g~e~~k~~l~~l~s~~~~---------~ 145 (418)
T cd01154 80 INIEDGPAGE-----GRRHVHFAAGYLLSDAAAGLLCPLTMTDAAVYALRKYGPEELKQYLPGLLSDRYK---------T 145 (418)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC---------C
T ss_conf 1367887667-----8739999999999887776513999999999999970909999987875257854---------3
Q ss_pred CCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEECCCCCEEEEEEECCC------CCEEEEEECCCCCCCCC
Q ss_conf 212355445888887866543027864896689845146863421157999704699------61799987758988403
Q gi|254780299|r 195 SVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEG------RVGCFLVPRLLEDGSPN 268 (562)
Q Consensus 195 g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~~------Gls~FlVp~~~pgg~~n 268 (562)
T Consensus 146 ~~~g~~~mTEp~~GSDv~~~~T~A~~~~~g~y~LnG~Kwf~s~~~ad~~lVlArt~~~~~g~~GiS~FlVP~~~~dg~~n 225 (418)
T cd01154 146 GLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRN 225 (418)
T ss_pred CCCCCCCCCCCCCCCCHHHHHEEEEECCCCEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 31140247999844697763248998799979997899997781136899999947988887874589996316888868
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 47886304755456577279998690753007776579999997301333579999999999999999998404622242
Q gi|254780299|r 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGI 348 (562)
Q Consensus 269 ~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~ 348 (562)
T Consensus 226 g~~i~rl~~KlG~r~~~t~el~f~~~~~~llG~~g~G~~~~~~~ln~~Rl~~a~~a~G~ar~al~~A~~YA~~R~~FG~p 305 (418)
T cd01154 226 GYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKP 305 (418)
T ss_pred CEEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 64851334776877687479998570264267545318999999888986405878999999999999874124347977
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 35388889999999999999999999999887201110-36777655679999999999999999569988521300045
Q gi|254780299|r 349 LIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR-SEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEE 427 (562)
Q Consensus 349 L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~-~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee 427 (562)
T Consensus 306 i~~~~~v~~~La~m~~~~eaa~~l~~~~a~~~d~~~~~~~~~~~~~rl~t~iaK~~~~~~a~~~~~~amqi~GG~Gy~ee 385 (418)
T cd01154 306 LIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEE 385 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 45369999999999999999999999999998436999767899888889999999999999999999997026013368
Q ss_pred CHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 518898500122322046222789999998312
Q gi|254780299|r 428 RSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 428 ~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
T Consensus 386 ~~v~r~~RDa~i~~I~EGT~~Iq~ld~~Ral~k 418 (418)
T cd01154 386 WPVARLHREAQVTPIWEGTGNIQALDVLRVLVK 418 (418)
T ss_pred CHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCC
T ss_conf 369999974516611068999999999998529