HHsearch alignment for GI: 254780299 and conserved domain: cd01154

>cd01154 AidB AidB. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehyrdogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00  E-value=0  Score=853.53  Aligned_cols=409  Identities=41%  Similarity=0.631  Sum_probs=385.7

Q ss_pred             CCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCC
Q ss_conf             01678899999720-42110789999998501899999986343698462017998521365668899999999996796
Q gi|254780299|r   37 YSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGL  115 (562)
Q Consensus        37 ~~~D~~l~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl  115 (562)
T Consensus         1 ~~~D~~L~~~l~~~~~~~~~~~l~~~G~~~~~-~~~~~~~~a~~~~P~l~~~d~~G~rid~v~~~~~~~~~~~~~~~~g~   79 (418)
T cd01154           1 YLDDPVLQQTLRYFGDPEEEPDLSRLGELAGG-ELYELARLADRNPPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGV   79 (418)
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCC
T ss_conf             99878899999985882202999999999879-99999987605898875658888868858828799999999997796


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHCCCCCCHHHCCCCCCC
Q ss_conf             203377666644476379999999998301445312213567789999850-8788987301200100054426600155
Q gi|254780299|r  116 HCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMT-TPRVHKDWAPKIFSREYDPTNKAPMQKT  194 (562)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~~-~~e~~~~~lp~l~s~~~~~~~~~~~~k~  194 (562)
T Consensus        80 ~~~~~~~~~~-----~~~~~~~a~~~l~~~~~~g~~cp~~mT~ga~~~L~~~g~e~~k~~l~~l~s~~~~---------~  145 (418)
T cd01154          80 INIEDGPAGE-----GRRHVHFAAGYLLSDAAAGLLCPLTMTDAAVYALRKYGPEELKQYLPGLLSDRYK---------T  145 (418)
T ss_pred             CCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC---------C
T ss_conf             1367887667-----8739999999999887776513999999999999970909999987875257854---------3


Q ss_pred             CCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEECCCCCEEEEEEECCC------CCEEEEEECCCCCCCCC
Q ss_conf             212355445888887866543027864896689845146863421157999704699------61799987758988403
Q gi|254780299|r  195 SVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEG------RVGCFLVPRLLEDGSPN  268 (562)
Q Consensus       195 g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~~------Gls~FlVp~~~pgg~~n  268 (562)
T Consensus       146 ~~~g~~~mTEp~~GSDv~~~~T~A~~~~~g~y~LnG~Kwf~s~~~ad~~lVlArt~~~~~g~~GiS~FlVP~~~~dg~~n  225 (418)
T cd01154         146 GLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRN  225 (418)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHEEEEECCCCEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf             31140247999844697763248998799979997899997781136899999947988887874589996316888868


Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             47886304755456577279998690753007776579999997301333579999999999999999998404622242
Q gi|254780299|r  269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGI  348 (562)
Q Consensus       269 ~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~  348 (562)
T Consensus       226 g~~i~rl~~KlG~r~~~t~el~f~~~~~~llG~~g~G~~~~~~~ln~~Rl~~a~~a~G~ar~al~~A~~YA~~R~~FG~p  305 (418)
T cd01154         226 GYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKP  305 (418)
T ss_pred             CEEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             64851334776877687479998570264267545318999999888986405878999999999999874124347977


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             35388889999999999999999999999887201110-36777655679999999999999999569988521300045
Q gi|254780299|r  349 LIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR-SEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEE  427 (562)
Q Consensus       349 L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~-~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee  427 (562)
T Consensus       306 i~~~~~v~~~La~m~~~~eaa~~l~~~~a~~~d~~~~~~~~~~~~~rl~t~iaK~~~~~~a~~~~~~amqi~GG~Gy~ee  385 (418)
T cd01154         306 LIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEE  385 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             45369999999999999999999999999998436999767899888889999999999999999999997026013368


Q ss_pred             CHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             518898500122322046222789999998312
Q gi|254780299|r  428 RSIARHYRESPANSILLGSGNAMVLDVLNLLEK  460 (562)
Q Consensus       428 ~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r  460 (562)
T Consensus       386 ~~v~r~~RDa~i~~I~EGT~~Iq~ld~~Ral~k  418 (418)
T cd01154         386 WPVARLHREAQVTPIWEGTGNIQALDVLRVLVK  418 (418)
T ss_pred             CHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCC
T ss_conf             369999974516611068999999999998529