HHsearch alignment for GI: 254780299 and conserved domain: cd01156
>cd01156 IVD Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=0 Score=461.02 Aligned_cols=328 Identities=20% Similarity=0.251 Sum_probs=286.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHHH-H-CCHHHHHHHHHHHCCC
Q ss_conf 99999996796203377666644476379999999998301445312213567-7899998-5-0878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVT-SASMVAL-M-TTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt-~~a~~~L-~-~~~e~~~~~lp~l~s~ 181 (562)
T Consensus 37 ~~~~~l~e~Gl~~~~vPee~GG~g~--~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G 114 (376)
T cd01156 37 DLWRKMGKLGLLGITAPEEYGGSGM--GYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISG 114 (376)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 9999999779988889965699998--89999999999986367555122276788999999849999999998998479
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC-----CCEE
Q ss_conf 0054426600155212355445888887866543027864896689845146863-421157999704699-----6179
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-----RVGC 255 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~-----Gls~ 255 (562)
T Consensus 115 ~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~~~~-~~lnG~K~~v~~~~~Ad~~~v~ar~~~~~~~~gi~~ 180 (376)
T cd01156 115 EH-------------IGALAMSEPNAGSDVVSMKLRAEKKGDR-YVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGITA 180 (376)
T ss_pred CE-------------EEEECCCCCCCCCCHHCCEEEEEEECCE-EEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE
T ss_conf 85-------------5430468999887512075799981998-999516723221212543578862167667576269
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
T Consensus 181 flV~~~~~G-----v~~~~~~~~~G~r~~~~~~v~fd~v~vp~~~llg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al 255 (376)
T cd01156 181 FIVEKGMPG-----FSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAAL 255 (376)
T ss_pred EEEECCCCC-----CCCCCCCCCCCCCCCCCEEEEECCEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998406898-----620465455567778861687154441667615864406999987135778886665544457776
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
T Consensus 256 ~~a~~ya~~R~qfG~~i~~~q~iq~~lad~~~~~e~ar~~~~~aa~~~d~~~~~~~-------~~a~ak~~~~e~a~~~a 328 (376)
T cd01156 256 DVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPK-------DAAGVILYAAEKATQVA 328 (376)
T ss_pred HHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHH
T ss_conf 77777788898719850106999999999999999999999999999867999889-------99999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 569988521300045518898500122322046222789999998312
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
T Consensus 329 ~~a~q~~Gg~G~~~e~~~~r~~Rdar~~~i~~Gt~ei~r~~ia~~ll~ 376 (376)
T cd01156 329 LDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999996274312267489999987106723066899999999999609