HHsearch alignment for GI: 254780299 and conserved domain: cd01163

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C (DszC). DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00  E-value=0  Score=387.88  Aligned_cols=330  Identities=18%  Similarity=0.170  Sum_probs=274.2

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf             9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE  182 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~  182 (562)
T Consensus        26 e~~~~l~e~Gl~gl~vP~~~GG~g~~--~~~~~~v~eela~~~~s~a~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~g~  103 (377)
T cd01163          26 EEVALLRQSGLGTLRVPKEYGGLGAS--LPDLYEVVRELAAADSNIAQALRAHFGFVEALLLAGPEQFRKRWFGRVLNGW  103 (377)
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf             99999997799887989323999999--9999999999987685589999874248999998097999998668873798


Q ss_pred             CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCCC-CEEEEEEC
Q ss_conf             0544266001552123554458888878665430278648966898451468634-211579997046996-17999877
Q gi|254780299|r  183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEGR-VGCFLVPR  260 (562)
Q Consensus       183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~G-ls~FlVp~  260 (562)
T Consensus       104 --------------~~~~a~te~g-~~~~~~~~t~a~~~~gg-~~lnG~K~fiS~~~~Ad~~~v~a~~~~g~~~~~lv~~  167 (377)
T cd01163         104 --------------IFGNAVSERG-SVRPGTFLTATVRDGGG-YVLNGKKFYSTGALFSDWVTVSALDEEGKLVFAAVPT  167 (377)
T ss_pred             --------------EEECCCCCCC-CCCCCCCCEEEEEECCE-EEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf             --------------6213568877-76500041489973998-9998468524798658689999995599707999977


Q ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             589884034788630475545657727999869075---30077765799999973013335799999999999999999
Q gi|254780299|r  261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIH  337 (562)
Q Consensus       261 ~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~  337 (562)
T Consensus       168 ~~~G-----v~i~~~~~~~G~rgs~s~~l~fddv~Vp~~~llg~~~~~~~~~~-~~~~~~~~~aa~~lG~a~~Ald~a~~  241 (377)
T cd01163         168 DRPG-----ITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTL-LTAIYQLVLAAVLAGIARAALDDAVA  241 (377)
T ss_pred             CCCC-----CCCCCCCCCCCCCCCCCEEEEECCEEECHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9988-----73577632246777874179855467069991687763888988-54899999999999999999999999


Q ss_pred             HHHHCCCC-----CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98404622-----2423538888999999999999999999999988720111-----0367776556799999999999
Q gi|254780299|r  338 YARRRHVS-----GGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS-----RSEEAAYARIMAPITKYWCCKM  407 (562)
Q Consensus       338 yA~~R~~f-----G~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~-----~~~~~a~arl~t~iaK~~~~e~  407 (562)
T Consensus       242 ya~~R~r~~~~~~~~~~~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~ase~  321 (377)
T cd01163         242 YVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRL  321 (377)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99973120256753321356999999999999999999999999999988643355456445576799999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999995699885213000455188985001223220462227899999983
Q gi|254780299|r  408 APAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL  458 (562)
Q Consensus       408 a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l  458 (562)
T Consensus       322 a~~v~~~a~qi~GG~G~~~~~~leR~~RDar~~~~h~p~~~~~~~~~~~~~  372 (377)
T cd01163         322 ALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYKERAVGDYAL  372 (377)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999999999998299977583599999977656104889999999999997