HHsearch alignment for GI: 254780299 and conserved domain: cd01163
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C (DszC). DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=0 Score=387.88 Aligned_cols=330 Identities=18% Similarity=0.170 Sum_probs=274.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
T Consensus 26 e~~~~l~e~Gl~gl~vP~~~GG~g~~--~~~~~~v~eela~~~~s~a~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 26 EEVALLRQSGLGTLRVPKEYGGLGAS--LPDLYEVVRELAAADSNIAQALRAHFGFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999997799887989323999999--9999999999987685589999874248999998097999998668873798
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCCC-CEEEEEEC
Q ss_conf 0544266001552123554458888878665430278648966898451468634-211579997046996-17999877
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEGR-VGCFLVPR 260 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~G-ls~FlVp~ 260 (562)
T Consensus 104 --------------~~~~a~te~g-~~~~~~~~t~a~~~~gg-~~lnG~K~fiS~~~~Ad~~~v~a~~~~g~~~~~lv~~ 167 (377)
T cd01163 104 --------------IFGNAVSERG-SVRPGTFLTATVRDGGG-YVLNGKKFYSTGALFSDWVTVSALDEEGKLVFAAVPT 167 (377)
T ss_pred --------------EEECCCCCCC-CCCCCCCCEEEEEECCE-EEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf --------------6213568877-76500041489973998-9998468524798658689999995599707999977
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 589884034788630475545657727999869075---30077765799999973013335799999999999999999
Q gi|254780299|r 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIH 337 (562)
Q Consensus 261 ~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~ 337 (562)
T Consensus 168 ~~~G-----v~i~~~~~~~G~rgs~s~~l~fddv~Vp~~~llg~~~~~~~~~~-~~~~~~~~~aa~~lG~a~~Ald~a~~ 241 (377)
T cd01163 168 DRPG-----ITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTL-LTAIYQLVLAAVLAGIARAALDDAVA 241 (377)
T ss_pred CCCC-----CCCCCCCCCCCCCCCCCEEEEECCEEECHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988-----73577632246777874179855467069991687763888988-54899999999999999999999999
Q ss_pred HHHHCCCC-----CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98404622-----2423538888999999999999999999999988720111-----0367776556799999999999
Q gi|254780299|r 338 YARRRHVS-----GGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS-----RSEEAAYARIMAPITKYWCCKM 407 (562)
Q Consensus 338 yA~~R~~f-----G~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~-----~~~~~a~arl~t~iaK~~~~e~ 407 (562)
T Consensus 242 ya~~R~r~~~~~~~~~~~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~ase~ 321 (377)
T cd01163 242 YVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRL 321 (377)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99973120256753321356999999999999999999999999999988643355456445576799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999995699885213000455188985001223220462227899999983
Q gi|254780299|r 408 APAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 408 a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
T Consensus 322 a~~v~~~a~qi~GG~G~~~~~~leR~~RDar~~~~h~p~~~~~~~~~~~~~ 372 (377)
T cd01163 322 ALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999998299977583599999977656104889999999999997