HHsearch alignment for GI: 254780299 and conserved domain: pfam08028
>pfam08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain.
Probab=99.92 E-value=3.5e-24 Score=180.31 Aligned_cols=130 Identities=25% Similarity=0.304 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHH
Q ss_conf 357999999999999999999840462--22423538888999999999999999999999988720111036-777655
Q gi|254780299|r 318 LDSAIMSVSGMRVSLAEAIHYARRRHV--SGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE-EAAYAR 394 (562)
Q Consensus 318 l~~a~~~~G~ar~al~~A~~yA~~R~~--fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~-~~a~ar 394 (562)
T Consensus 1 lgiaA~~lG~a~~ald~~~~~~~~R~~~~~g~~l~~~~~~q~~la~~~~~l~aar~~~~~~a~~~~~~~~~g~~~~~~~~ 80 (134)
T pfam08028 1 LGFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLERAADRIWAHADRGDEVTPEER 80 (134)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 95999999999999999999997176666886699777899999999999999999999999999975653776999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCH
Q ss_conf 67999999999999999956998852130004551889850012232204622
Q gi|254780299|r 395 IMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSG 447 (562)
Q Consensus 395 l~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~ 447 (562)
T Consensus 81 ~~~~~~k~~a~~~a~~v~~~~~~~~Gg~g~~~~~~~~R~~RD~r~~~~H~~~~ 133 (134)
T pfam08028 81 ARARRDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFWRDAHAGAAHAGLD 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999738531668983999999998999727789