HHsearch results for GI: 254780299 and protein with PDBid: 1egd_A
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=0 Score=409.84 Aligned_cols=329 Identities=18% Similarity=0.197 Sum_probs=287.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHHHCCCC
Q ss_conf 999999967962033776666444763799999999983014453122135677899998--508788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL--MTTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L--~~~~e~~~~~lp~l~s~~ 182 (562)
++++.+.+.||.++.++.++++.+. ..+.........+..+....+.+.++..++..| .++++++..|+|++.+++
T Consensus 51 ~~~~~l~e~Gl~~l~vP~e~GG~g~--~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~ 128 (396)
T 1egd_A 51 PLIRRAWELGLMNTHIPENCGGLGL--GTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP 128 (396)
T ss_dssp HHHHHHHHHTCSSTTSCGGGTSCCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
T ss_conf 9999999779987789831299998--89999999999985276543100245556999998489999988706556787
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC--------CC
Q ss_conf 0544266001552123554458888878665430278648966898451468634-21157999704699--------61
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG--------RV 253 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~--------Gl 253 (562)
+++++++|||++|||+..++|+|++++|| |+|||+|+|+|+ +.+|+++|+|++++ ++
T Consensus 129 -------------~~~a~a~tEp~~Gsd~~~~~t~a~~~~~g-~~L~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~~ 194 (396)
T 1egd_A 129 -------------LMCAYCVTEPGAGSDVAGIKTKAEKKGDE-YIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAF 194 (396)
T ss_dssp -------------CCEEEECCBTTBSSSGGGCCCEEEECSSE-EEEEEEEEEEETTTTCSEEEEEEECCCCTTSCGGGTE
T ss_pred -------------EEEEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCE
T ss_conf -------------12477754898888720176799997999-9998899958898637999999850334554678744
Q ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999877589884034788630475545657727999869075---3007776579999997301333579999999999
Q gi|254780299|r 254 GCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRV 330 (562)
Q Consensus 254 s~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~ 330 (562)
++|+||.+.|| |++.+.++++|+++++++++.|+|+++ ++||++|+|++.+..+++.+|+..++.++|++++
T Consensus 195 ~~~~v~~~~~G-----v~~~~~~~~~Gl~~s~s~~v~f~dv~Vp~~~~l~~~~~g~~~~~~~~~~~rl~~~a~~~G~a~~ 269 (396)
T 1egd_A 195 TGFIVEADTPG-----IQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQR 269 (396)
T ss_dssp EEEEEETTCTT-----EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCC-----CEECCCCCCCCCCCCCEEEEEEECCEECHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89987248998-----6415754444677788048999575860520654578348999987778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999840462224235388889999999999999999999999887201110367776556799999999999999
Q gi|254780299|r 331 SLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPA 410 (562)
Q Consensus 331 al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~ 410 (562)
+++.+++|+++|++||+||.++|.+|++|+++.+.+++++.+++.+++..|.+.... ..++++|+++++.+.+
T Consensus 270 al~~a~~~~~~R~~~g~~i~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~aK~~a~~~a~~ 342 (396)
T 1egd_A 270 ALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNT-------YYASIAKAFAGDIANQ 342 (396)
T ss_dssp HHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHH
T ss_conf 999999999850534876454799999998755567777569999999997799857-------8999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 995699885213000455188985001223220462227899999983126
Q gi|254780299|r 411 VIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 411 v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
+++.++|++||.||++++|++|+|||+++.+|||||++||++.+.|.+.+.
T Consensus 343 v~~~~~~~~Gg~g~~~~~pl~r~~RDa~~~~i~~Gt~ei~~~ii~r~~l~~ 393 (396)
T 1egd_A 343 LATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393 (396)
T ss_dssp HHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHH
T ss_conf 999999971841215656899999762201882378999999999998610