HHsearch results for GI: 254780299 and protein with PDBid: 1rx0_A
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=0 Score=411.29 Aligned_cols=330 Identities=18% Similarity=0.224 Sum_probs=286.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHHHCCCC
Q ss_conf 999999967962033776666444763799999999983014453122135677899998--508788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL--MTTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L--~~~~e~~~~~lp~l~s~~ 182 (562)
++++...+.||.++..+.++++.+. ............+..+........+...+...+ .++++++.+|+|++.+++
T Consensus 54 e~~~~l~e~Gl~~~~vP~e~GG~g~--~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~~~ 131 (393)
T 1rx0_A 54 DVMRKAAQLGFGGVYIQTDVGGSGL--SRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTME 131 (393)
T ss_dssp HHHHHHHHTTCSSTTSCGGGTCCCC--CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
T ss_conf 9999999779987689831299999--99999999999985477534321256899999998599999998706323434
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC----CCEEEE
Q ss_conf 0544266001552123554458888878665430278648966898451468634-21157999704699----617999
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG----RVGCFL 257 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~----Gls~Fl 257 (562)
+.+++++|||++|||+..+.|+|++++|| |+|||+|+|+|+ +.+|+++|+||+++ |+++|+
T Consensus 132 -------------~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~l~G~K~~~s~~~~Ad~~~v~a~~~~~~~~~~~~~l 197 (393)
T 1rx0_A 132 -------------KFASYCLTEPGSGSDAASLLTSAKKQGDH-YILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIV 197 (393)
T ss_dssp -------------SCEEEECCBTTBSSSGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEESSSSSGGGEEEEE
T ss_pred -------------CCCCEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf -------------33330413788788720364799997999-9999899987686548889999997898877606999
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877589884034788630475545657727999869075---30077765799999973013335799999999999999
Q gi|254780299|r 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAE 334 (562)
Q Consensus 258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~ 334 (562)
||++.|| |++.+.++++|+|+++++++.|++|++ ++||++++|++.++..++.+|+..+..++|+++++++.
T Consensus 198 V~~~~pG-----v~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~~~~~g~~~~~~~~ 272 (393)
T 1rx0_A 198 VEKGTPG-----LSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVIL 272 (393)
T ss_dssp EETTCTT-----EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCC-----EEEECCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 8679996-----38603313357778871599978876789990688771599999988988875010246789999999
Q ss_pred HHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998404622242353888899999999999999999999998872011103677765567999999999999999956
Q gi|254780299|r 335 AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAE 414 (562)
Q Consensus 335 A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~ 414 (562)
+++|+++|++||+|+..+|.+|+.|+++...+++++.++++.+..+|++..+. ...++++|+++++.+.+++++
T Consensus 273 a~~~~~~R~~~g~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~a~~aK~~a~e~a~~v~~~ 346 (393)
T 1rx0_A 273 TRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDA------VALCSMAKLFATDECFAICNQ 346 (393)
T ss_dssp HHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998756553875201057999999989999888999999999998268457------999999999999999999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99885213000455188985001223220462227899999983126
Q gi|254780299|r 415 AMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 415 Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
|+|++||.||++++|++|+|||+++.+|+|||++||.+.+.|.+.|+
T Consensus 347 a~~~~Gg~g~~~~~~l~r~~RDar~~~i~~Gt~~v~~~~iar~ll~~ 393 (393)
T 1rx0_A 347 ALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393 (393)
T ss_dssp HHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCHHCCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCC
T ss_conf 99963850314776899999860652262876999999999998569