HHsearch results for GI: 254780299 and protein with PDBid: 1siq_A
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=0 Score=396.58 Aligned_cols=325 Identities=20% Similarity=0.227 Sum_probs=272.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHH-HHCCHHHHHHHHHHHCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778--9999-850878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA--SMVA-LMTTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~--a~~~-L~~~~e~~~~~lp~l~s~ 181 (562)
++++...+.|+.++.++ ++++.+ ...+.........+...........++.. .... ..++++++++|+|++.++
T Consensus 49 e~~~~l~~~Gl~~~~~p-e~GG~g--~~~~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 125 (392)
T 1siq_A 49 EIISEMGELGVLGPTIK-GYGCAG--VSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKG 125 (392)
T ss_dssp HHHHHHHHTTCSSTTCE-ETTEEC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCC
T ss_conf 99999997598867763-337899--999999999998876403454333320344432200246788899853667788
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEE--EECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC-CCEEEE
Q ss_conf 0054426600155212355445888887866543027--864896689845146863-421157999704699-617999
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQG--QKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-RVGCFL 257 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A--~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~-Gls~Fl 257 (562)
+ .+.++++|||.+|||.....+++ .++++ +|+|||+|+|++ ++.+|+++|+||+++ +++.|+
T Consensus 126 ~-------------~~~~~a~tEp~~g~~~~~~~~~~~~~~~~~-g~~lnG~K~~it~~~~a~~~~v~a~~~~~~~~~~l 191 (392)
T 1siq_A 126 E-------------LLGCFGLTEPNSGSDPSSMETRAHYNSSNK-SYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFL 191 (392)
T ss_dssp S-------------SCEEEECCBTTBSSCGGGCCCEEEEETTTT-EEEEEEEEEEEETGGGCSEEEEEEEETTSCEEEEE
T ss_pred C-------------EEEEECCCCCCCCCCCCCCCCCCCCCCCCE-EEECCEEEEEECCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 7-------------786422650660134434444311224440-47568078413057665089999841578753222
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877589884034788630475545657727999869075---30077765799999973013335799999999999999
Q gi|254780299|r 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAE 334 (562)
Q Consensus 258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~ 334 (562)
||++.|| +++.+.++++|+++++++++.|+||.+ ++++ ..+|+...+..++.+|+.+++.++|+++++++.
T Consensus 192 v~~~~~G-----v~i~~~~~~~Gl~~~~s~~i~~~dv~vp~~~~l~-~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~~ 265 (392)
T 1siq_A 192 LEKGMRG-----LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLP-GASSLGGPFGCLNNARYGIAWGVLGASEFCLHT 265 (392)
T ss_dssp EETTCTT-----EECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCT-TCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-----CEEECCCCCCCCCCCCEEEEEECCEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2599998-----3652114643567761257851787998403544-110078998878999999999987899999999
Q ss_pred HHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998404622242353888899999999999999999999998872011103677765567999999999999999956
Q gi|254780299|r 335 AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAE 414 (562)
Q Consensus 335 A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~ 414 (562)
+++|+++|+|||+||+++|.+|+++++|.+++++++++++++++..+.+..... .++++|+++++.+.+++++
T Consensus 266 a~~y~~~R~~fg~pl~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~-------~~~~ak~~a~~~a~~v~~~ 338 (392)
T 1siq_A 266 ARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPE-------MVSLLKRNNCGKALDIARQ 338 (392)
T ss_dssp HHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHH
T ss_conf 999986250247610202036654100222113667899998532214852699-------9999999999999999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 998852130004551889850012232204622278999999831
Q gi|254780299|r 415 AMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE 459 (562)
Q Consensus 415 Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~ 459 (562)
+||+|||.||++|+|++|+|||+++++|||||+|||++.+.|.+.
T Consensus 339 a~ql~Gg~G~~~~~pl~r~~Rda~~~~i~~Gt~~i~~~~i~r~~l 383 (392)
T 1siq_A 339 ARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAIT 383 (392)
T ss_dssp HHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHCCCCHHHHHHHHHCCCCEECCHHHHHHHHHHHHHH
T ss_conf 998447520056458999998650702624889999999999983