HHsearch results for GI: 254780299 and protein with PDBid: 1siq_A

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00  E-value=0  Score=396.58  Aligned_cols=325  Identities=20%  Similarity=0.227  Sum_probs=272.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHH-HHCCHHHHHHHHHHHCCC
Q ss_conf             9999999679620337766664447637999999999830144531221356778--9999-850878898730120010
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA--SMVA-LMTTPRVHKDWAPKIFSR  181 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~--a~~~-L~~~~e~~~~~lp~l~s~  181 (562)
                      ++++...+.|+.++.++ ++++.+  ...+.........+...........++..  .... ..++++++++|+|++.++
T Consensus        49 e~~~~l~~~Gl~~~~~p-e~GG~g--~~~~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g  125 (392)
T 1siq_A           49 EIISEMGELGVLGPTIK-GYGCAG--VSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKG  125 (392)
T ss_dssp             HHHHHHHHTTCSSTTCE-ETTEEC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCC
T ss_conf             99999997598867763-337899--999999999998876403454333320344432200246788899853667788


Q ss_pred             CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEE--EECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC-CCEEEE
Q ss_conf             0054426600155212355445888887866543027--864896689845146863-421157999704699-617999
Q gi|254780299|r  182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQG--QKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-RVGCFL  257 (562)
Q Consensus       182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A--~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~-Gls~Fl  257 (562)
                      +             .+.++++|||.+|||.....+++  .++++ +|+|||+|+|++ ++.+|+++|+||+++ +++.|+
T Consensus       126 ~-------------~~~~~a~tEp~~g~~~~~~~~~~~~~~~~~-g~~lnG~K~~it~~~~a~~~~v~a~~~~~~~~~~l  191 (392)
T 1siq_A          126 E-------------LLGCFGLTEPNSGSDPSSMETRAHYNSSNK-SYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFL  191 (392)
T ss_dssp             S-------------SCEEEECCBTTBSSCGGGCCCEEEEETTTT-EEEEEEEEEEEETGGGCSEEEEEEEETTSCEEEEE
T ss_pred             C-------------EEEEECCCCCCCCCCCCCCCCCCCCCCCCE-EEECCEEEEEECCCCCCEEEEEEEECCCCCCCCCC
T ss_conf             7-------------786422650660134434444311224440-47568078413057665089999841578753222


Q ss_pred             EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             877589884034788630475545657727999869075---30077765799999973013335799999999999999
Q gi|254780299|r  258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAE  334 (562)
Q Consensus       258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~  334 (562)
                      ||++.||     +++.+.++++|+++++++++.|+||.+   ++++ ..+|+...+..++.+|+.+++.++|+++++++.
T Consensus       192 v~~~~~G-----v~i~~~~~~~Gl~~~~s~~i~~~dv~vp~~~~l~-~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~~  265 (392)
T 1siq_A          192 LEKGMRG-----LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLP-GASSLGGPFGCLNNARYGIAWGVLGASEFCLHT  265 (392)
T ss_dssp             EETTCTT-----EECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCT-TCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCC-----CEEECCCCCCCCCCCCEEEEEECCEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2599998-----3652114643567761257851787998403544-110078998878999999999987899999999


Q ss_pred             HHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998404622242353888899999999999999999999998872011103677765567999999999999999956
Q gi|254780299|r  335 AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAE  414 (562)
Q Consensus       335 A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~  414 (562)
                      +++|+++|+|||+||+++|.+|+++++|.+++++++++++++++..+.+.....       .++++|+++++.+.+++++
T Consensus       266 a~~y~~~R~~fg~pl~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~-------~~~~ak~~a~~~a~~v~~~  338 (392)
T 1siq_A          266 ARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPE-------MVSLLKRNNCGKALDIARQ  338 (392)
T ss_dssp             HHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHH
T ss_conf             999986250247610202036654100222113667899998532214852699-------9999999999999999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             998852130004551889850012232204622278999999831
Q gi|254780299|r  415 AMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE  459 (562)
Q Consensus       415 Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~  459 (562)
                      +||+|||.||++|+|++|+|||+++++|||||+|||++.+.|.+.
T Consensus       339 a~ql~Gg~G~~~~~pl~r~~Rda~~~~i~~Gt~~i~~~~i~r~~l  383 (392)
T 1siq_A          339 ARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAIT  383 (392)
T ss_dssp             HHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHCCCCHHHHHHHHHCCCCEECCHHHHHHHHHHHHHH
T ss_conf             998447520056458999998650702624889999999999983