HHsearch results for GI: 254780299 and protein with PDBid: 1ukw_A
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=0 Score=405.68 Aligned_cols=326 Identities=20% Similarity=0.240 Sum_probs=282.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHHHCCCCC
Q ss_conf 99999967962033776666444763799999999983014453122135677899998--5087889873012001000
Q gi|254780299|r 106 LLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL--MTTPRVHKDWAPKIFSREY 183 (562)
Q Consensus 106 l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L--~~~~e~~~~~lp~l~s~~~ 183 (562)
+++...+.|+.++.++.++++.+.+. ..........+.......+...++..+...+ .++++++.+|++.+.++.
T Consensus 41 ~~~~l~~~Gl~~~~vP~e~GG~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 117 (379)
T 1ukw_A 41 VIEKLHEVGLLNAIIPEEYGGMGLKM--LDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKP- 117 (379)
T ss_dssp HHHHHHHTTCTTTTSCGGGTSCCCCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHGGGTSSS-
T ss_pred HHHHHHHCCCCCCCCCHHHCCCCCCH--HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCC-
T ss_conf 99999977998457995469999989--999999998764003222101110355678775099999998634133687-
Q ss_pred CHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC-----CCEEEE
Q ss_conf 544266001552123554458888878665430278648966898451468634-21157999704699-----617999
Q gi|254780299|r 184 DPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVGCFL 257 (562)
Q Consensus 184 ~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~-----Gls~Fl 257 (562)
+.+++++|||++|||+.++.|+|++++|| |+|||+|+|+|+ +.+|+++|++++++ |+++|+
T Consensus 118 ------------~~~~~a~tE~~~gs~~~~~~t~a~~~~gg-~~l~G~k~~vs~~~~a~~~~v~a~~~~~~~~~~~~~~l 184 (379)
T 1ukw_A 118 ------------ALAAFALSEPGNGSDAAALKTRAIRQGDH-YVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALV 184 (379)
T ss_dssp ------------CEEEEECCBTTBSSCGGGCCCEEEEETTE-EEEEEEEEEEETTTTEEEEEEEEESCGGGGGGGEEEEE
T ss_pred ------------CCCEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf ------------53125544898888855652699997999-99987999882886565045666517777778559999
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877589884034788630475545657727999869075---30077765799999973013335799999999999999
Q gi|254780299|r 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAE 334 (562)
Q Consensus 258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~ 334 (562)
||++.|| |++.+.++++|+|+++++++.|++|++ ++||++|+|++.++..++.+|+..++.++|+++++++.
T Consensus 185 v~~~~pg-----v~i~~~~~~~G~r~t~s~~~~f~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~l~~~a~~~G~a~~al~~ 259 (379)
T 1ukw_A 185 VERGTPG-----FKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDE 259 (379)
T ss_dssp EETTCTT-----EEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCC-----EEECCCCCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9688896-----28416767767887862799993379718980488784699999989999999999999999999999
Q ss_pred HHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998404622242353888899999999999999999999998872011103677765567999999999999999956
Q gi|254780299|r 335 AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAE 414 (562)
Q Consensus 335 A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~ 414 (562)
+++|+++|++||+||.++|.+|.+|+++.+++++++.+++.+++..|++.+... .++++|+++++.+.+++++
T Consensus 260 ~~~~~~~R~~~g~pi~~~~~v~~~la~~~~~~~~~~~~~~~a~~~~d~~~~~~~-------~~~~aK~~~~~~a~~v~~~ 332 (379)
T 1ukw_A 260 ARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAH-------ASAIAKAYASEIAFEAANQ 332 (379)
T ss_dssp HHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_conf 999998463378765546999999999999999999999999999976999468-------9999999999999999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 998852130004551889850012232204622278999999831
Q gi|254780299|r 415 AMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE 459 (562)
Q Consensus 415 Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~ 459 (562)
|++++||.||++++|++|+|||+++.+|||||++||++.|.|.+.
T Consensus 333 ~~~~~G~~g~~~~~~l~r~~Rd~~~~~i~~Gt~~v~~~~iar~~l 377 (379)
T 1ukw_A 333 AIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377 (379)
T ss_dssp HHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHH
T ss_conf 999717415326568999998720035607769999999999986