HHsearch results for GI: 254780299 and protein with PDBid: 1ukw_A

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00  E-value=0  Score=405.68  Aligned_cols=326  Identities=20%  Similarity=0.240  Sum_probs=282.7

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHHHCCCCC
Q ss_conf             99999967962033776666444763799999999983014453122135677899998--5087889873012001000
Q gi|254780299|r  106 LLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL--MTTPRVHKDWAPKIFSREY  183 (562)
Q Consensus       106 l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L--~~~~e~~~~~lp~l~s~~~  183 (562)
                      +++...+.|+.++.++.++++.+.+.  ..........+.......+...++..+...+  .++++++.+|++.+.++. 
T Consensus        41 ~~~~l~~~Gl~~~~vP~e~GG~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  117 (379)
T 1ukw_A           41 VIEKLHEVGLLNAIIPEEYGGMGLKM--LDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKP-  117 (379)
T ss_dssp             HHHHHHHTTCTTTTSCGGGTSCCCCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHGGGTSSS-
T ss_pred             HHHHHHHCCCCCCCCCHHHCCCCCCH--HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCC-
T ss_conf             99999977998457995469999989--999999998764003222101110355678775099999998634133687-


Q ss_pred             CHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC-----CCEEEE
Q ss_conf             544266001552123554458888878665430278648966898451468634-21157999704699-----617999
Q gi|254780299|r  184 DPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVGCFL  257 (562)
Q Consensus       184 ~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~-----Gls~Fl  257 (562)
                                  +.+++++|||++|||+.++.|+|++++|| |+|||+|+|+|+ +.+|+++|++++++     |+++|+
T Consensus       118 ------------~~~~~a~tE~~~gs~~~~~~t~a~~~~gg-~~l~G~k~~vs~~~~a~~~~v~a~~~~~~~~~~~~~~l  184 (379)
T 1ukw_A          118 ------------ALAAFALSEPGNGSDAAALKTRAIRQGDH-YVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALV  184 (379)
T ss_dssp             ------------CEEEEECCBTTBSSCGGGCCCEEEEETTE-EEEEEEEEEEETTTTEEEEEEEEESCGGGGGGGEEEEE
T ss_pred             ------------CCCEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf             ------------53125544898888855652699997999-99987999882886565045666517777778559999


Q ss_pred             EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             877589884034788630475545657727999869075---30077765799999973013335799999999999999
Q gi|254780299|r  258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAE  334 (562)
Q Consensus       258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~  334 (562)
                      ||++.||     |++.+.++++|+|+++++++.|++|++   ++||++|+|++.++..++.+|+..++.++|+++++++.
T Consensus       185 v~~~~pg-----v~i~~~~~~~G~r~t~s~~~~f~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~l~~~a~~~G~a~~al~~  259 (379)
T 1ukw_A          185 VERGTPG-----FKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDE  259 (379)
T ss_dssp             EETTCTT-----EEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCC-----EEECCCCCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9688896-----28416767767887862799993379718980488784699999989999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998404622242353888899999999999999999999998872011103677765567999999999999999956
Q gi|254780299|r  335 AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAE  414 (562)
Q Consensus       335 A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~  414 (562)
                      +++|+++|++||+||.++|.+|.+|+++.+++++++.+++.+++..|++.+...       .++++|+++++.+.+++++
T Consensus       260 ~~~~~~~R~~~g~pi~~~~~v~~~la~~~~~~~~~~~~~~~a~~~~d~~~~~~~-------~~~~aK~~~~~~a~~v~~~  332 (379)
T 1ukw_A          260 ARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAH-------ASAIAKAYASEIAFEAANQ  332 (379)
T ss_dssp             HHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_conf             999998463378765546999999999999999999999999999976999468-------9999999999999999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             998852130004551889850012232204622278999999831
Q gi|254780299|r  415 AMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE  459 (562)
Q Consensus       415 Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~  459 (562)
                      |++++||.||++++|++|+|||+++.+|||||++||++.|.|.+.
T Consensus       333 ~~~~~G~~g~~~~~~l~r~~Rd~~~~~i~~Gt~~v~~~~iar~~l  377 (379)
T 1ukw_A          333 AIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL  377 (379)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHH
T ss_conf             999717415326568999998720035607769999999999986