HHsearch results for GI: 254780299 and protein with PDBid: 2d29_A

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus HB8} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00  E-value=0  Score=399.90  Aligned_cols=328  Identities=21%  Similarity=0.282  Sum_probs=279.4

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHH-HCCHHHHHHHHHHHCCC
Q ss_conf             99999996796203377666644476379999999998301445--3122135677899998-50878898730120010
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA--GHLMSPSVTSASMVAL-MTTPRVHKDWAPKIFSR  181 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~--g~~cp~~mt~~a~~~L-~~~~e~~~~~lp~l~s~  181 (562)
                      ++++...+.||.++..++++|+.+.....  ........+..+.  +..+......+...++ .++++++.+|+|++.++
T Consensus        42 ~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~--~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~g  119 (387)
T 2d29_A           42 DLVRKLAEFGVFGALVPEAYGGAGLSTRL--FARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASG  119 (387)
T ss_dssp             HHHHHHHTTTGGGSSSCGGGTCCCCCHHH--HHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCHHHHCC
T ss_conf             99999997799877899545899999999--9999999987304344200242046688998608888898638797479


Q ss_pred             CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC---------C
Q ss_conf             0054426600155212355445888887866543027864896689845146863-42115799970469---------9
Q gi|254780299|r  182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE---------G  251 (562)
Q Consensus       182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~---------~  251 (562)
                      +             .++++++|||.+|||+....|+|++++|| |+|||+|+|+| ++.+|+++|.|+++         .
T Consensus       120 ~-------------~~~~~a~tE~~~g~~~~~~~t~a~~~~~g-~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~  185 (387)
T 2d29_A          120 E-------------ALGAWGLTEPGSGSDAAALKTKAEKVEGG-WRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQ  185 (387)
T ss_dssp             S-------------SCEEEECCBTTBSSSGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEECSCCSCGGGTTT
T ss_pred             C-------------EEEEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf             8-------------79998615898888743451599997999-999968998826755407899987358777554568


Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             617999877589884034788630475545657727999869075---30077765799999973013335799999999
Q gi|254780299|r  252 RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM  328 (562)
Q Consensus       252 Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~a  328 (562)
                      |+++|+||+..||     +++.+.++++|+|+++++++.|+||++   ++||++|+|+..+...++.+|+.+++.++|++
T Consensus       186 g~~~~~v~~~~~g-----v~i~~~~~~~G~rgt~s~~v~fd~v~Vp~~~vlg~~~~g~~~~~~~~~~~rl~~~a~~lG~a  260 (387)
T 2d29_A          186 GISAFAFFRPERG-----LKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLG  260 (387)
T ss_dssp             TEEEEEEECCSSS-----EEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCC-----CEECCCCCCCCCCCCCEEEEEEECEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6168998659998-----67557655566777871699990579769990898895699999989999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998404622242353888899999999999999999999998872011103677765567999999999999
Q gi|254780299|r  329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMA  408 (562)
Q Consensus       329 r~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a  408 (562)
                      +++++.+++|+++|++||+||.++|.+|++|+++.+.+++++.+++.+++..|.+....       ..++++|+++++.+
T Consensus       261 ~~al~~~~~~~~~R~~~g~~i~~~~~vq~~la~~~~~~~~a~~~~~~~~~~~d~~~~~~-------~~~~~aK~~a~~~a  333 (387)
T 2d29_A          261 QAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFT-------LEAAQAKLFASEAA  333 (387)
T ss_dssp             HHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHH
T ss_conf             99999999999637115875665799999999866678888778999999996799748-------99999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             9999569988521300045518898500122322046222789999998312
Q gi|254780299|r  409 PAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK  460 (562)
Q Consensus       409 ~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r  460 (562)
                      .++++.++|++||.||.+++|++|+|||+++.+|+|||++||++.+.|.+.+
T Consensus       334 ~~v~~~a~~~~Gg~g~~~~~~l~r~~RDa~~~~i~~Gt~ev~~~~iar~~l~  385 (387)
T 2d29_A          334 VKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE  385 (387)
T ss_dssp             HHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHC
T ss_conf             9999999996274244277779999987121066286599999999999871