HHsearch results for GI: 254780299 and protein with PDBid: 2d29_A
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus HB8} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=0 Score=399.90 Aligned_cols=328 Identities=21% Similarity=0.282 Sum_probs=279.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHH-HCCHHHHHHHHHHHCCC
Q ss_conf 99999996796203377666644476379999999998301445--3122135677899998-50878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA--GHLMSPSVTSASMVAL-MTTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~--g~~cp~~mt~~a~~~L-~~~~e~~~~~lp~l~s~ 181 (562)
++++...+.||.++..++++|+.+..... ........+..+. +..+......+...++ .++++++.+|+|++.++
T Consensus 42 ~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~--~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~g 119 (387)
T 2d29_A 42 DLVRKLAEFGVFGALVPEAYGGAGLSTRL--FARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASG 119 (387)
T ss_dssp HHHHHHHTTTGGGSSSCGGGTCCCCCHHH--HHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCHHHHCC
T ss_conf 99999997799877899545899999999--9999999987304344200242046688998608888898638797479
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC---------C
Q ss_conf 0054426600155212355445888887866543027864896689845146863-42115799970469---------9
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE---------G 251 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~---------~ 251 (562)
+ .++++++|||.+|||+....|+|++++|| |+|||+|+|+| ++.+|+++|.|+++ .
T Consensus 120 ~-------------~~~~~a~tE~~~g~~~~~~~t~a~~~~~g-~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~ 185 (387)
T 2d29_A 120 E-------------ALGAWGLTEPGSGSDAAALKTKAEKVEGG-WRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQ 185 (387)
T ss_dssp S-------------SCEEEECCBTTBSSSGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEECSCCSCGGGTTT
T ss_pred C-------------EEEEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 8-------------79998615898888743451599997999-999968998826755407899987358777554568
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 617999877589884034788630475545657727999869075---30077765799999973013335799999999
Q gi|254780299|r 252 RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328 (562)
Q Consensus 252 Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~a 328 (562)
|+++|+||+..|| +++.+.++++|+|+++++++.|+||++ ++||++|+|+..+...++.+|+.+++.++|++
T Consensus 186 g~~~~~v~~~~~g-----v~i~~~~~~~G~rgt~s~~v~fd~v~Vp~~~vlg~~~~g~~~~~~~~~~~rl~~~a~~lG~a 260 (387)
T 2d29_A 186 GISAFAFFRPERG-----LKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLG 260 (387)
T ss_dssp TEEEEEEECCSSS-----EEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCC-----CEECCCCCCCCCCCCCEEEEEEECEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6168998659998-----67557655566777871699990579769990898895699999989999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998404622242353888899999999999999999999998872011103677765567999999999999
Q gi|254780299|r 329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMA 408 (562)
Q Consensus 329 r~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a 408 (562)
+++++.+++|+++|++||+||.++|.+|++|+++.+.+++++.+++.+++..|.+.... ..++++|+++++.+
T Consensus 261 ~~al~~~~~~~~~R~~~g~~i~~~~~vq~~la~~~~~~~~a~~~~~~~~~~~d~~~~~~-------~~~~~aK~~a~~~a 333 (387)
T 2d29_A 261 QAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFT-------LEAAQAKLFASEAA 333 (387)
T ss_dssp HHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHH
T ss_conf 99999999999637115875665799999999866678888778999999996799748-------99999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 9999569988521300045518898500122322046222789999998312
Q gi|254780299|r 409 PAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 409 ~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
.++++.++|++||.||.+++|++|+|||+++.+|+|||++||++.+.|.+.+
T Consensus 334 ~~v~~~a~~~~Gg~g~~~~~~l~r~~RDa~~~~i~~Gt~ev~~~~iar~~l~ 385 (387)
T 2d29_A 334 VKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385 (387)
T ss_dssp HHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHC
T ss_conf 9999999996274244277779999987121066286599999999999871