HHsearch results for GI: 254780299 and protein with PDBid: 2jif_A
>2jif_A Short/branched chain specific acyl-COA dehydrogenase; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, acetylation; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=0 Score=416.22 Aligned_cols=327 Identities=20% Similarity=0.291 Sum_probs=278.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-H--HCCHHHHHHHHHHHCCC
Q ss_conf 99999996796203377666644476379999999998301445312213567789999-8--50878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVA-L--MTTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~-L--~~~~e~~~~~lp~l~s~ 181 (562)
++++.+.+.|+.++.+++++++.+.. ....+......+..+........++...... + .++++++..|+|....
T Consensus 64 ~~~~~l~e~Gl~~~~vP~e~GG~g~~--~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (404)
T 2jif_A 64 SVIQGLFQQGLMGIEVDPEYGGTGAS--FLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT- 140 (404)
T ss_dssp HHHHHHHHTTTTSSSSCGGGTCCCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCHHHHC-
T ss_conf 99999997799855899656999999--999999999998647764442224421343465414748876430324406-
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC-----CCEE
Q ss_conf 00544266001552123554458888878665430278648966898451468634-21157999704699-----6179
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVGC 255 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~-----Gls~ 255 (562)
+.++++++|||.+|||+.++.|+|++++|| |+|||+|+|+|+ +.||+++|+|++++ |+++
T Consensus 141 -------------~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g-~~LnG~K~~~s~~~~Ad~~~v~a~~~~~~~~~~~~~ 206 (404)
T 2jif_A 141 -------------EKVGSFCLSEAGAGSDSFALKTRADKEGDY-YVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITS 206 (404)
T ss_dssp -------------TCCEEEECCBTTBSSSGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEE
T ss_pred -------------CCEEEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEE
T ss_conf -------------521268841676688865642699997999-999889998779620769999633278788784499
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
|+||++.|| |++.+.++++|+++++++++.|+||++ ++||++|+|+++++..++.+|+.+++.++|++++++
T Consensus 207 ~lV~~~~~G-----v~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~lg~~g~G~~~~~~~l~~~r~~~aa~~lG~a~~al 281 (404)
T 2jif_A 207 FLVDRDTPG-----LHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCF 281 (404)
T ss_dssp EEEETTCTT-----EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCC-----EEECCCCCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999789996-----597577665678877548999942698599908988937999999899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
+.+++|+++|++||+||.++|.+++++++|.+.+++++++++++++.+|.+..... .++++|+++++.+.+++
T Consensus 282 ~~a~~y~~~R~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~aa~~~d~g~~~~~-------~~~~aK~~a~~~~~~~~ 354 (404)
T 2jif_A 282 DYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIK-------EASMAKYYASEIAGQTT 354 (404)
T ss_dssp HHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHH
T ss_conf 99999999757538804533247899999999999999999999999977999589-------99999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 569988521300045518898500122322046222789999998312
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
+.|+|++||.||++++|++|+|||+++.+|||||++||...+.|.+.+
T Consensus 355 ~~a~~~~Gg~G~~~~~pl~r~~RDa~~~~i~~Gt~ei~r~~iar~~l~ 402 (404)
T 2jif_A 355 SKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDA 402 (404)
T ss_dssp HHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHH
T ss_conf 999997086331377789999975476126077299999999999985