HHsearch results for GI: 254780299 and protein with PDBid: 2uxw_A
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; alternative splicing, fatty acid metabolism, transit peptide, disease mutation, lipid metabolism; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=0 Score=480.19 Aligned_cols=414 Identities=19% Similarity=0.211 Sum_probs=327.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH--HHHHHH-HCCHHHHHHHHHHHCCC
Q ss_conf 999999967962033776666444763799999999983014453122135677--899998-50878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS--ASMVAL-MTTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~--~a~~~L-~~~~e~~~~~lp~l~s~ 181 (562)
++++...+.||.++.+++++|+.+. ............+..+.++...+.++. +...++ .+++||+++|+|++.++
T Consensus 83 ~~~~~l~e~Gl~gl~iP~e~GG~g~--~~~~~~~v~e~la~~~~s~a~~~~~~~~l~~~~l~~~Gt~eqk~~~L~~l~~G 160 (607)
T 2uxw_A 83 TTWQGLKELGAFGLQVPSELGGVGL--CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASG 160 (607)
T ss_dssp HHHHHHHHTTTTCTTSCGGGTSCCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 9999999779988899965699999--99999999999988680188999999999999999849999999988999679
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCC-EEEECCEEEEEE-CCCCCEEEEEEECC---------
Q ss_conf 0054426600155212355445888887866543027864896-689845146863-42115799970469---------
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG-IYCLSGHKWFLS-SPMSDAFIMLAQVE--------- 250 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg-~y~LnG~Kwf~s-a~~ad~~lVlArt~--------- 250 (562)
++ ++++++|||++|||+.++.|+++++.|| .|+|||.|+|++ ++.+|+++|+|+++
T Consensus 161 e~-------------~~~~altEp~~Gsd~~~~~t~a~~~~~G~~~ilnG~k~~~t~~~~a~~~~v~a~~~~~~~~~~~~ 227 (607)
T 2uxw_A 161 ET-------------VAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 227 (607)
T ss_dssp SS-------------CEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCE
T ss_pred CE-------------EEEEEECCCCCCCCCCCCCEEEEEECCCCEEEECCEEECCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 95-------------68864237877877221130224536998899836253235885554046764036665666666
Q ss_pred -CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -9617999877589884034788630475545657727999869075---300777657999999730133357999999
Q gi|254780299|r 251 -GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVS 326 (562)
Q Consensus 251 -~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G 326 (562)
+|+++|+||++.|| |++.+.++|+|+++++|+++.|+||++ ++||++|+|+++++.+++.+|+.+++.++|
T Consensus 228 ~~gis~flV~~~~pG-----v~i~~~~~~~G~r~~~s~~v~f~dv~VP~~~llG~~g~G~~~~~~~l~~~R~~~~a~~~g 302 (607)
T 2uxw_A 228 KEKITAFVVERGFGG-----ITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAG 302 (607)
T ss_dssp EEEEEEEEEEGGGSS-----EEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCC-----EEECCCCCCCCCCCCCEEEEEECCEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 678249996089996-----273786564678888727999735686599908988808999999999999873577888
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999984046222423538888999999999999999999999988720111036777655679999999999
Q gi|254780299|r 327 GMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCK 406 (562)
Q Consensus 327 ~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e 406 (562)
.++++++.+++|+++|+|||+||.++|.+|++|++|.+.+++++++++++++.+|..... .++.++++|+++++
T Consensus 303 ~~~~a~~~a~~ya~~R~qfg~~i~~~q~vq~~la~m~~~~~aa~~l~~~aa~~~d~~~~~------~~~~~a~aK~~ate 376 (607)
T 2uxw_A 303 TMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATD------FQIEAAISKIFGSE 376 (607)
T ss_dssp HHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHHH
T ss_conf 789999999998763431488002110699999999999999999999999998648974------21116789999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCC---HHH
Q ss_conf 9999995699885213000455188985001223220462227899999983-126037999999999642545---177
Q gi|254780299|r 407 MAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL-EKGTNLFEQLFSTLEQDLGSS---GKK 482 (562)
Q Consensus 407 ~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l-~r~~~~~~~l~~~l~~~~g~~---~~~ 482 (562)
.+.+++++|+|++||.||++++|++|+|||+++++||||||+||.+.+.|.. .+.+..+..+...+....... ...
T Consensus 377 ~a~~v~~~a~qi~GG~G~~~~~~ler~~RD~r~~~i~eGtn~i~~~~ia~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 456 (607)
T 2uxw_A 377 AAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGSALKNPFGNAGLLLGE 456 (607)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHGGGCSCCCTTC--------
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999708401137778999997446723618749999999999999975599899999997076505678999
Q ss_pred HHHHHHHHHC----------CCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8999998730----------542213778---99999999999999999708579999999964002565545114
Q gi|254780299|r 483 VITILRDSIS----------LCKEDKGLA---RFLTEKIALASSAAALYRAGMNDIADVFLENRFLDNCHSTHCML 545 (562)
Q Consensus 483 ~~~~l~~~~~----------~~~~~e~~A---R~~~e~la~~~~aalL~r~a~~~va~af~~~Rl~~~~~~~~g~l 545 (562)
....++.... ..+.+...+ .+..++++..... +|.+|+...+.++++..||++.....|.+-
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~g~~l~~~q~~l~Rlad~~~~ly~~~ 531 (607)
T 2uxw_A 457 AGKQLRRRAGLGSGLSLSGLVHPELSRSGELAVRALEQFATVVEA-KLIKHKKGIVNEQFLLQRLADGAIDLYAMV 531 (607)
T ss_dssp ------------CCCCCBTTBCGGGHHHHHHHHHHHHHHHHHHHH-HHHHHGGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999873444444434335866899999999999999999999-999875699999999999999999999999