HHsearch results for GI: 254780299 and protein with PDBid: 2z1q_A
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=487.62 Aligned_cols=336 Identities=22% Similarity=0.280 Sum_probs=285.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCH-HHHH-HHHHHH-HCCHHHHHHHHHHHCC
Q ss_conf 999999996796203377666644476379999999998301445312213-5677-899998-5087889873012001
Q gi|254780299|r 104 HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSP-SVTS-ASMVAL-MTTPRVHKDWAPKIFS 180 (562)
Q Consensus 104 ~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~-~mt~-~a~~~L-~~~~e~~~~~lp~l~s 180 (562)
+++++...+.||.++.++.++|+.+. +.+..+.....++... +...++ ..+. +...++ .++++|+.+|+|++.+
T Consensus 63 ~~l~~~l~e~Gl~~l~vP~e~GG~g~--~~~~~~~v~e~la~~~-~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~~~~ 139 (577)
T 2z1q_A 63 VPLMRKAGELGLLAIDVPEEYGGLDL--PKVISTVVAEELSGSG-GFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLAS 139 (577)
T ss_dssp HHHHHHHHHTTTTSTTSCGGGTCCCC--CHHHHHHHHHHHTTSC-THHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHCCCCCC--CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 99999999779988898820099998--8999999999987647-27789999999999999984999999987266508
Q ss_pred CCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCC-EEEECCEEEEEEC-CCCCEEEEEEECC-CCCEEEE
Q ss_conf 00054426600155212355445888887866543027864896-6898451468634-2115799970469-9617999
Q gi|254780299|r 181 REYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG-IYCLSGHKWFLSS-PMSDAFIMLAQVE-GRVGCFL 257 (562)
Q Consensus 181 ~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg-~y~LnG~Kwf~sa-~~ad~~lVlArt~-~Gls~Fl 257 (562)
+++ +.++++|||++|||+....|+++...|| +|+|||+|||+|+ +.+|+++|+||++ +|+|+|+
T Consensus 140 G~~-------------~~~~a~te~~~gs~~~~~~~~~~~~~~g~~~~l~G~K~~it~~~~A~~~~V~ar~~~~g~s~fl 206 (577)
T 2z1q_A 140 GEW-------------IAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDGEHFTAFL 206 (577)
T ss_dssp TSS-------------CEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETTTEEEEEE
T ss_pred CCH-------------HHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEE
T ss_conf 838-------------8875650775545521001134770799879998799665567767689999980898558999
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEE---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87758988403478863047554565772799986907---530077765799999973013335799999999999999
Q gi|254780299|r 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAE 334 (562)
Q Consensus 258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~ 334 (562)
||++.|| |++.+.++|+|+|+++++++.|+||+ .++||++|+|+++++.+++.+|+.+++.++|+++++++.
T Consensus 207 V~~~~pG-----v~i~~~~~~~G~r~~~~~~v~f~dv~VP~~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~ 281 (577)
T 2z1q_A 207 VERDTPG-----LSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALEL 281 (577)
T ss_dssp EETTCTT-----EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCC-----EEECCCCCCCCCCCCCEEEEEEECEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9789997-----58547756667877873699982638459991899881899999989999999999999999999999
Q ss_pred HHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHH
Q ss_conf 999984046222423538888999999999999999999999988720111036-------7776556799999999999
Q gi|254780299|r 335 AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE-------EAAYARIMAPITKYWCCKM 407 (562)
Q Consensus 335 A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~-------~~a~arl~t~iaK~~~~e~ 407 (562)
+++|+++|+|||+||++||.||++|++|.+++++++++++++++.+|++..... .....++.++++|+++++.
T Consensus 282 a~~ya~~R~qfG~pi~~~q~v~~~la~~~~~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~~e~ 361 (577)
T 2z1q_A 282 SAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEV 361 (577)
T ss_dssp HHHHHHHCBCSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999853315887753324999999999999999999999999997530146787988715366689999999996799
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 99999569988521300045518898500122322046222789999998312
Q gi|254780299|r 408 APAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 408 a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
+.+++++|||++||+||++++|++|+|||++++.||||||+||++++.+.+.+
T Consensus 362 ~~~~~~~a~qi~GG~G~~~~~~l~r~~RDar~~~i~eGt~~i~r~~ia~~~l~ 414 (577)
T 2z1q_A 362 LDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLR 414 (577)
T ss_dssp HHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH
T ss_conf 99989999997087777778879999976111024178499999999999999