HHsearch results for GI: 254780299 and protein with PDBid: 3nf4_A
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=0 Score=397.23 Aligned_cols=328 Identities=23% Similarity=0.277 Sum_probs=287.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--HHCCHHHHHHHHHHHCCCC
Q ss_conf 99999996796203377666644476379999999998301445312213567789999--8508788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVA--LMTTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~--L~~~~e~~~~~lp~l~s~~ 182 (562)
++++.+.+.||.++.++.++|+.+.. .........-.+..++.....+.++..+... ..++++++.+|++.+.+++
T Consensus 51 ~~~~~l~~~Gl~~l~vP~~~GG~g~~--~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~ 128 (387)
T 3nf4_A 51 GVFEQLGAAGLLSLPQPEEWGGGGQP--YEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGE 128 (387)
T ss_dssp THHHHHHTTTTTSTTSCGGGTCCCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf 99999997799888988321999999--9999999999987323200356652788999999577989998755651656
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC---CCEEEEE
Q ss_conf 054426600155212355445888887866543027864896689845146863-421157999704699---6179998
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG---RVGCFLV 258 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~---Gls~FlV 258 (562)
. +++.++|||.+|||.....|++++++|| |+|||+|+|+| ++.+|+++|+|++++ |+++|+|
T Consensus 129 ~-------------~~~~~~~e~~~~~~~~~~~~~a~~~~~g-~~l~G~K~~~t~~~~a~~~~v~a~~~~~~~~~~~~lV 194 (387)
T 3nf4_A 129 Q-------------IGAYSLSEPQAGSDAAALRCAATPTDGG-YVINGSKSWITHGGKADFYTLFARTGEGSRGVSCFLV 194 (387)
T ss_dssp C-------------CEEEECCBTTBSSCGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEECC--CCCEEEEEE
T ss_pred H-------------HHHHHHCCCCCCCCCCCCCEEEEECCCC-EEEEEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 5-------------4431104655566743342014862797-1453357888631666458999985899873589999
Q ss_pred ECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77589884034788630475545657727999869075---300777657999999730133357999999999999999
Q gi|254780299|r 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335 (562)
Q Consensus 259 p~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A 335 (562)
|++.|| |++.+.++++|+++++++++.|+++.+ ++||++++|++.++..++.+|+..++.++|+++++++.+
T Consensus 195 ~~~~~G-----v~v~~~~~~~G~rgt~s~~v~f~~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~~a~~~G~a~~al~~~ 269 (387)
T 3nf4_A 195 PADQPG-----LSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEA 269 (387)
T ss_dssp ETTCTT-----EEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCC-----EEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789997-----696266566667768626899568305688700876717999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99984046222423538888999999999999999999999988720111036777655679999999999999999569
Q gi|254780299|r 336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEA 415 (562)
Q Consensus 336 ~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~A 415 (562)
++|+++|++||+||.++|.+|++++++...+++++.+++.++...|++..... .++++|+++++.+.++++++
T Consensus 270 ~~~~~~R~~~g~~l~~~q~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~aK~~at~~a~~~~~~a 342 (387)
T 3nf4_A 270 VAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQ-------QASIAKLTATDAAMKVTTDA 342 (387)
T ss_dssp HHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf 99997461168677862788898877899999998889999999977998379-------99999999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 988521300045518898500122322046222789999998312
Q gi|254780299|r 416 MECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 416 iqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
+|++||.||.+++|++|+|||+++.+|||||++||.+.+.|.+.|
T Consensus 343 ~~l~Gg~g~~~~~~l~r~~RDa~~~~i~~Gt~~v~~~~i~r~l~~ 387 (387)
T 3nf4_A 343 VQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp HHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred HHHHCCHHHCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf 998285353277789999975273357468799999999988479