HHsearch results for GI: 254780299 and protein with PDBid: 3nf4_A

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00  E-value=0  Score=397.23  Aligned_cols=328  Identities=23%  Similarity=0.277  Sum_probs=287.2

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--HHCCHHHHHHHHHHHCCCC
Q ss_conf             99999996796203377666644476379999999998301445312213567789999--8508788987301200100
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVA--LMTTPRVHKDWAPKIFSRE  182 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~--L~~~~e~~~~~lp~l~s~~  182 (562)
                      ++++.+.+.||.++.++.++|+.+..  .........-.+..++.....+.++..+...  ..++++++.+|++.+.+++
T Consensus        51 ~~~~~l~~~Gl~~l~vP~~~GG~g~~--~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~  128 (387)
T 3nf4_A           51 GVFEQLGAAGLLSLPQPEEWGGGGQP--YEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGE  128 (387)
T ss_dssp             THHHHHHTTTTTSTTSCGGGTCCCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             99999997799888988321999999--9999999999987323200356652788999999577989998755651656


Q ss_pred             CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC---CCEEEEE
Q ss_conf             054426600155212355445888887866543027864896689845146863-421157999704699---6179998
Q gi|254780299|r  183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG---RVGCFLV  258 (562)
Q Consensus       183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~---Gls~FlV  258 (562)
                      .             +++.++|||.+|||.....|++++++|| |+|||+|+|+| ++.+|+++|+|++++   |+++|+|
T Consensus       129 ~-------------~~~~~~~e~~~~~~~~~~~~~a~~~~~g-~~l~G~K~~~t~~~~a~~~~v~a~~~~~~~~~~~~lV  194 (387)
T 3nf4_A          129 Q-------------IGAYSLSEPQAGSDAAALRCAATPTDGG-YVINGSKSWITHGGKADFYTLFARTGEGSRGVSCFLV  194 (387)
T ss_dssp             C-------------CEEEECCBTTBSSCGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEECC--CCCEEEEEE
T ss_pred             H-------------HHHHHHCCCCCCCCCCCCCEEEEECCCC-EEEEEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf             5-------------4431104655566743342014862797-1453357888631666458999985899873589999


Q ss_pred             ECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77589884034788630475545657727999869075---300777657999999730133357999999999999999
Q gi|254780299|r  259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA  335 (562)
Q Consensus       259 p~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A  335 (562)
                      |++.||     |++.+.++++|+++++++++.|+++.+   ++||++++|++.++..++.+|+..++.++|+++++++.+
T Consensus       195 ~~~~~G-----v~v~~~~~~~G~rgt~s~~v~f~~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~~a~~~G~a~~al~~~  269 (387)
T 3nf4_A          195 PADQPG-----LSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEA  269 (387)
T ss_dssp             ETTCTT-----EEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCC-----EEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             789997-----696266566667768626899568305688700876717999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99984046222423538888999999999999999999999988720111036777655679999999999999999569
Q gi|254780299|r  336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEA  415 (562)
Q Consensus       336 ~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~A  415 (562)
                      ++|+++|++||+||.++|.+|++++++...+++++.+++.++...|++.....       .++++|+++++.+.++++++
T Consensus       270 ~~~~~~R~~~g~~l~~~q~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~aK~~at~~a~~~~~~a  342 (387)
T 3nf4_A          270 VAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQ-------QASIAKLTATDAAMKVTTDA  342 (387)
T ss_dssp             HHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf             99997461168677862788898877899999998889999999977998379-------99999999999999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             988521300045518898500122322046222789999998312
Q gi|254780299|r  416 MECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK  460 (562)
Q Consensus       416 iqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r  460 (562)
                      +|++||.||.+++|++|+|||+++.+|||||++||.+.+.|.+.|
T Consensus       343 ~~l~Gg~g~~~~~~l~r~~RDa~~~~i~~Gt~~v~~~~i~r~l~~  387 (387)
T 3nf4_A          343 VQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR  387 (387)
T ss_dssp             HHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred             HHHHCCHHHCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf             998285353277789999975273357468799999999988479