PSIBLAST alignment of GI: 254780299 and protein with PDB id: 3mdd

>gi|640350|pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385
>gi|640351|pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 126/391 (32%), Gaps = 47/391 (12%)

Query: 78  NYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRA 137
               P    Y   G      E+      LL+R+   GL  +    SF  +          
Sbjct: 23  EEIIPVAAEYDRTG------EYP---VPLLKRAWELGLMNTHIPESFGGLGLGIIDSC-L 72

Query: 138 ARLYLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVA 197
               L            + T   +  ++      +                  M +  + 
Sbjct: 73  ITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQK------------KYLGRMTEEPLM 120

Query: 198 IGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE------ 250
               +TE   G+D+A I ++ +K  D  Y ++G K W  +   ++ + +LA+ +      
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGD-EYIINGQKMWITNGGKANWYFLLARSDPDPKAP 179

Query: 251 --GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVS 305
                  F+V           +   R +  +G R + T  + F +       +L      
Sbjct: 180 ASKAFTGFIVEADTPG-----VQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAG 234

Query: 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALD 365
                          A  +V   + +L EA  YA  R   G +L +   +   +AD+A+ 
Sbjct: 235 FKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMK 294

Query: 366 IAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
           +  A     R A   D  +            A I K +   +A  +  +A++  GG+G+ 
Sbjct: 295 VELARLSYQRAAWEIDSGR-------RNTYYASIAKAYAADIANQLATDAVQVFGGNGFN 347

Query: 426 EERSIARHYRESPANSILLGSGNAMVLDVLN 456
            E  + +  R++    I  G+     + +  
Sbjct: 348 TEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 378