RPSBLAST alignment for GI: 254780299 and conserved domain: cd01158

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373
 Score = 93.5 bits (233), Expect = 1e-19
 Identities = 72/265 (27%), Positives = 125/265 (47%), Gaps = 34/265 (12%)

Query: 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVG--- 254
              L+E   G+D AA+ +  +K  D  Y L+G K W  +   +D +I+ A  +   G   
Sbjct: 116 AFALSEPGAGSDAAALKTTAKKDGDD-YVLNGSKMWITNGGEADFYIVFAVTDPSKGYRG 174

Query: 255 --CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309
              F+V R     +P GL   + ++K+G R ++T EL F +       +LG+        
Sbjct: 175 ITAFIVER----DTP-GLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGE------EG 223

Query: 310 EDMKILI-YLDS-----AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIA 363
           E  KI +  LD      A  ++   + +L  A+ YA+ R   G  + D   ++  +AD+A
Sbjct: 224 EGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMA 283

Query: 364 LDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSG 423
            +I AA  L+++ A   D  +   +EAA    MA   K +  ++A  V  +A++  GG G
Sbjct: 284 TEIEAARLLTYKAARLKDNGEPFIKEAA----MA---KLFASEVAMRVTTDAVQIFGGYG 336

Query: 424 YIEERSIARHYRESPANSILLGSGN 448
           Y ++  + R+YR++    I  G+  
Sbjct: 337 YTKDYPVERYYRDAKITEIYEGTSE 361