RPSBLAST alignment for GI: 254780299 and conserved domain: cd01158
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373
Score = 93.5 bits (233), Expect = 1e-19
Identities = 72/265 (27%), Positives = 125/265 (47%), Gaps = 34/265 (12%)
Query: 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVG--- 254
L+E G+D AA+ + +K D Y L+G K W + +D +I+ A + G
Sbjct: 116 AFALSEPGAGSDAAALKTTAKKDGDD-YVLNGSKMWITNGGEADFYIVFAVTDPSKGYRG 174
Query: 255 --CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309
F+V R +P GL + ++K+G R ++T EL F + +LG+
Sbjct: 175 ITAFIVER----DTP-GLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGE------EG 223
Query: 310 EDMKILI-YLDS-----AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIA 363
E KI + LD A ++ + +L A+ YA+ R G + D ++ +AD+A
Sbjct: 224 EGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMA 283
Query: 364 LDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSG 423
+I AA L+++ A D + +EAA MA K + ++A V +A++ GG G
Sbjct: 284 TEIEAARLLTYKAARLKDNGEPFIKEAA----MA---KLFASEVAMRVTTDAVQIFGGYG 336
Query: 424 YIEERSIARHYRESPANSILLGSGN 448
Y ++ + R+YR++ I G+
Sbjct: 337 YTKDYPVERYYRDAKITEIYEGTSE 361