RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein
[Candidatus Liberibacter asiaticus str. psy62]
(562 letters)
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to
the AidB gene product. AidB is one of several genes
involved in the SOS adaptive response to DNA alkylation
damage, whose expression is activated by the Ada
protein. Its function has not been entirely elucidated;
however, it is similar in sequence and function to
acyl-CoA dehydrogenases. It has been proposed that aidB
directly destroys DNA alkylating agents such as
nitrosoguanidines (nitrosated amides) or their reaction
intermediates.
Length = 418
Score = 364 bits (936), Expect = e-101
Identities = 170/433 (39%), Positives = 243/433 (56%), Gaps = 24/433 (5%)
Query: 37 YSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWD 95
Y D +L + F +L LGE ELAR+A+ N P L + G R D
Sbjct: 1 YLDDPVLQQTLRYFGDPEEEPDLSRLGELA-GGELYELARLADRNPPVLEMWDRWGRRVD 59
Query: 96 KVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPS 155
+V HPAWHAL+RR I +G+ P + H AA YL++ AG L +
Sbjct: 60 RVWVHPAWHALMRRLIEEGVINIED----GPAGEGRRHVHFAAG-YLLSDAAAGLLCPLT 114
Query: 156 VTSASMVALMT-TPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAI 214
+T A++ AL P K + P + S Y KT + G +TEK+GG+D+ A
Sbjct: 115 MTDAAVYALRKYGPEELKQYLPGLLSDRY---------KTGLLGGTWMTEKQGGSDLGAN 165
Query: 215 TSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGR------VGCFLVPRLLEDGSPN 268
+ ++ G+Y L+GHKWF S+P++DA ++LA+ EG + FLVPRLLEDG+ N
Sbjct: 166 ETTAERSGGGVYRLNGHKWFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRN 225
Query: 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328
G +RLK+K+G RS AT E+EF + +L+GD + +M + LD+A+ ++ M
Sbjct: 226 GYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISRLDNAVAALGIM 285
Query: 329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA-KSRS 387
R +L+EA HYAR R G LID P+M+R +A++ +D+ AATAL+FR A +FD A +
Sbjct: 286 RRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKP 345
Query: 388 EEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSG 447
EA AR+ P+ K CK A V +EAME GG+GY+EE +AR +RE+ I G+G
Sbjct: 346 VEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTG 405
Query: 448 NAMVLDVLNLLEK 460
N LDVL +L K
Sbjct: 406 NIQALDVLRVLVK 418
>gnl|CDD|32143 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 165 bits (418), Expect = 3e-41
Identities = 94/383 (24%), Positives = 157/383 (40%), Gaps = 31/383 (8%)
Query: 89 PGGERWDKVEFHPAW-HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLE 147
P D+ + LLR GL + + + +AA L +A+ +
Sbjct: 26 PEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGL--SPLEQAAVLEELARAD 83
Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207
AG ++ +T + AL T K R Y P + + LTE
Sbjct: 84 AGGALALGLTHGGLGALAPTILRFGTEEQK---RRYLP----RLASGELIGAFALTEPGA 136
Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVG------CFLVPR 260
G+D+A++ + DG Y L+G K ++S +P++D ++LA+ + G FLVP+
Sbjct: 137 GSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPK 196
Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY 317
G+ + K+G R +AT E+ F + LLG+ + +
Sbjct: 197 ----DLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVER 252
Query: 318 LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLA 377
L A ++ +L EA+ YAR R G + D +++ +AD+A ++ AA L R A
Sbjct: 253 LGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAA 312
Query: 378 NSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRES 437
D A A + K + + A V EA++ GG GY EE + R+YR++
Sbjct: 313 ELADAGD-------DAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDA 365
Query: 438 PANSILLGSGNAMVLDVLNLLEK 460
I G+ L + L
Sbjct: 366 RILRIYEGTSEIQRLIIARRLLG 388
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA
dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases
(AXO) catalyze the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes all
share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 123 bits (310), Expect = 2e-28
Identities = 90/367 (24%), Positives = 151/367 (41%), Gaps = 58/367 (15%)
Query: 104 HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQL-EAGHLMSPSVTSASMV 162
LR S + + A + R L E G L+ A+++
Sbjct: 3 QRELRDSAREFA---------AEELEPYARERRETPEEPWELLAELGLLLG-----AALL 48
Query: 163 ALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKIS 222
T + + P + S E LTE G+D+A I + +K
Sbjct: 49 LAYGTEEQKERYLPPLASGEA-------------IAAFALTEPGAGSDLAGIRTTARKDG 95
Query: 223 DGIYCLSGHKWFLS-SPMSDAFIMLAQVEG------RVGCFLVPRLLEDGSPNGLCYQRL 275
DG Y L+G K F+S +D FI+LA+ + + FLVP +P G+ R+
Sbjct: 96 DG-YVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFLVPA----DTP-GVTVGRI 149
Query: 276 KNKIGNRSNATVELEFSNTF-------GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328
+K+G R + T EL F + G G ++ + ++L+ A +++
Sbjct: 150 WDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLL----AAVALGAA 205
Query: 329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE 388
R +L EA+ YA++R G L + ++ +AD+A ++ AA L +R A D+
Sbjct: 206 RAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGP---- 261
Query: 389 EAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGN 448
AR+ A + K + + A V AM+ GG GY E + R+ R++ A I G+
Sbjct: 262 --DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAE 319
Query: 449 AMVLDVL 455
L +
Sbjct: 320 IQRLIIA 326
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 109 bits (274), Expect = 3e-24
Identities = 81/336 (24%), Positives = 144/336 (42%), Gaps = 41/336 (12%)
Query: 148 AGHLMSPSVTSASMVALMT--TPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEK 205
LM S T + L+ T + W P++ E+ T + LTE
Sbjct: 80 DAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGT-------------MCLTEP 126
Query: 206 RGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAF-----IMLAQVEGR------VG 254
G+D+ A+ ++ +DG + ++G K F+S+ D ++LA+ EG +
Sbjct: 127 DAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPPGVKGLS 186
Query: 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKI 314
FLVP+ L+DG NG+ R++ K+G + T EL F N G L+G+ + + M
Sbjct: 187 LFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGELIGEEGMGLAQMFAMMN 246
Query: 315 LIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQP--------VMKRAIADIALDI 366
L + A+ YA+ R G ++ P ++R++
Sbjct: 247 GARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYA 306
Query: 367 AAATALSFRLANSFDEAK-------SRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECI 419
+ AL A D A+ R +A A ++ P+ K + + A +++A++
Sbjct: 307 EGSRALDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVH 366
Query: 420 GGSGYIEERSIARHYRESPANSILLGSGNAMVLDVL 455
GGSGY E I ++YR++ +I G+ LD++
Sbjct: 367 GGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLI 402
>gnl|CDD|144145 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal
domain. C-terminal domain of Acyl-CoA dehydrogenase is
an all-alpha, four helical up-and-down bundle.
Length = 150
Score = 93.9 bits (234), Expect = 1e-19
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 321 AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSF 380
A ++ R +L EAI YAR+R G LID +++ +AD+A ++ AA L +R A +
Sbjct: 19 AAAALGLARRALDEAIEYARQRKAFGRPLIDFQLIRHKLADMAAELEAARLLVYRAAEAL 78
Query: 381 DEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPAN 440
D A + K + ++A V AM+ +GG GY E + R YR++
Sbjct: 79 DAGG-------PDPAEAAMAKLYASELAQEVADLAMQLLGGYGYSREYPLERLYRDARVL 131
Query: 441 SILLGSGNAMVLDV 454
I G+ +
Sbjct: 132 RIGEGTSEIQRNII 145
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 93.5 bits (233), Expect = 1e-19
Identities = 72/265 (27%), Positives = 125/265 (47%), Gaps = 34/265 (12%)
Query: 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVG--- 254
L+E G+D AA+ + +K D Y L+G K W + +D +I+ A + G
Sbjct: 116 AFALSEPGAGSDAAALKTTAKKDGDD-YVLNGSKMWITNGGEADFYIVFAVTDPSKGYRG 174
Query: 255 --CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309
F+V R +P GL + ++K+G R ++T EL F + +LG+
Sbjct: 175 ITAFIVER----DTP-GLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGE------EG 223
Query: 310 EDMKILI-YLDS-----AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIA 363
E KI + LD A ++ + +L A+ YA+ R G + D ++ +AD+A
Sbjct: 224 EGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMA 283
Query: 364 LDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSG 423
+I AA L+++ A D + +EAA MA K + ++A V +A++ GG G
Sbjct: 284 TEIEAARLLTYKAARLKDNGEPFIKEAA----MA---KLFASEVAMRVTTDAVQIFGGYG 336
Query: 424 YIEERSIARHYRESPANSILLGSGN 448
Y ++ + R+YR++ I G+
Sbjct: 337 YTKDYPVERYYRDAKITEIYEGTSE 361
>gnl|CDD|35361 KOG0139, KOG0139, KOG0139, Short-chain acyl-CoA dehydrogenase
[Lipid transport and metabolism].
Length = 398
Score = 84.6 bits (209), Expect = 6e-17
Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 44/269 (16%)
Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVG---- 254
L+E G+D A+ + +K D Y ++G K +++ + +D F++ A + G
Sbjct: 154 FALSEPGAGSDAFALKTTAKKDGDD-YVINGSKMWITNAGEADWFLVFANADPSKGYKGI 212
Query: 255 -CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNT--------------FGFLL 299
CF+VPR GL + ++K+G R+++T +L F + + + +
Sbjct: 213 TCFIVPRDTP-----GLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAI 267
Query: 300 GDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAI 359
LN +I I + + E I YA+ R G L+D ++ I
Sbjct: 268 EVLNAG-------RIGI----GAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQI 316
Query: 360 ADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECI 419
AD+A +I AA L + A D+ +EAA A++ A ++A + ++ +
Sbjct: 317 ADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYAS-------EVATKTTHQCIQWL 369
Query: 420 GGSGYIEERSIARHYRESPANSILLGSGN 448
GG GY ++ + YR++ I G+ N
Sbjct: 370 GGVGYTKDFPAEKFYRDARIGEIYEGTSN 398
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 81.0 bits (200), Expect = 8e-16
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 45/272 (16%)
Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPM-SDAFIMLAQVEGR------ 252
+ +TE G+D+ I + +K D Y L+G K F+++ M +D I++A+ G
Sbjct: 116 IAMTEPGAGSDLQGIRTTARKDGDH-YVLNGSKTFITNGMLADVVIVVARTGGEARGAGG 174
Query: 253 VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNT--------------FGFL 298
+ FLV E G+P G R K+G ++ T EL F + F +L
Sbjct: 175 ISLFLV----ERGTP-GFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYL 229
Query: 299 LGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRA 358
+ +L P E + I A +++ L E +Y ++R G L V++
Sbjct: 230 MQNL-----PQERLLI------AAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHK 278
Query: 359 IADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMEC 418
IA++A +A A A ++ + EA+ A KYW ++ V E ++
Sbjct: 279 IAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMA-------KYWATELQNRVAYECVQL 331
Query: 419 IGGSGYIEERSIARHYRESPANSILLGSGNAM 450
GG GY+ E IAR YR++ I G+ M
Sbjct: 332 HGGWGYMREYPIARAYRDARVQPIYGGTTEIM 363
>gnl|CDD|35363 KOG0141, KOG0141, KOG0141, Isovaleryl-CoA dehydrogenase [Amino acid
transport and metabolism, Lipid transport and
metabolism].
Length = 421
Score = 76.9 bits (189), Expect = 1e-14
Identities = 63/265 (23%), Positives = 118/265 (44%), Gaps = 28/265 (10%)
Query: 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEGR----- 252
L ++E G+D+ ++ + +K D Y L+G K+++++ P +D I+ A+ +
Sbjct: 160 ALAMSEPGAGSDVVSMKLKAEKKGDD-YILNGSKFWITNGPDADVLIVYAKTDHSAVPPS 218
Query: 253 --VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTG 307
+ F+V E G P Q+L +K+G R + T EL F + +LG+ N G
Sbjct: 219 HGITAFIV----EKGMPGFSTAQKL-DKLGMRGSDTCELVFEDCKVPASNILGEEN--KG 271
Query: 308 PVEDMKILIY--LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALD 365
M L L A + M+ +L E YA +R G + +++ +AD+
Sbjct: 272 VYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTT 331
Query: 366 IAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
+ A+ + + +A + D ++ A + + A V +A++C+GG+GYI
Sbjct: 332 LCASRSYVYNVARACDAGNVDPKDCA-------GVILYAAEKATQVALDAIQCLGGNGYI 384
Query: 426 EERSIARHYRESPANSILLGSGNAM 450
E R R++ I G+
Sbjct: 385 NEYPTGRLLRDAKLYEIGAGTSEIR 409
>gnl|CDD|35359 KOG0137, KOG0137, KOG0137, Very-long-chain acyl-CoA dehydrogenase
[Lipid transport and metabolism].
Length = 634
Score = 71.1 bits (174), Expect = 7e-13
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 30/271 (11%)
Query: 202 LTEKRGGTDIAAI-TSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE--------- 250
LTE G+D A+ T+ Y L+G K W + ++D F + AQ E
Sbjct: 198 LTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVK 257
Query: 251 GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVE 310
++ FLV R G NG + K+G + + T E+ F + NV P +
Sbjct: 258 RKITAFLVERD-FGGVTNG----PPEKKMGIKGSNTAEVHFEGV---KIPIENVLGKPGD 309
Query: 311 DMKILIYL------DSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIAL 364
K+ + + A + M+ + EA YA R G L D +++ +A++A
Sbjct: 310 GFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMAS 369
Query: 365 DIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGY 424
+ A ++ + L+ DE A ++ A I K + + A AV++EA++ +GG GY
Sbjct: 370 KVYATESMLYLLSGLMDEV-----GAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGY 424
Query: 425 IEERSIARHYRESPANSILLGSGNAMVLDVL 455
+ + + R R++ I G+ + + L +
Sbjct: 425 MRDTGLERLLRDARILRIFEGTNDVLRLFIA 455
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 70.9 bits (174), Expect = 8e-13
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 30/244 (12%)
Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLA--QVEGRVGCFL 257
GLTE G+D + ++ +K G Y L+G K W +SP++D F++ A G++ F+
Sbjct: 131 GLTEPNHGSDPGGMETRARKDGGG-YKLNGSKTWITNSPIADVFVVWARNDETGKIRGFI 189
Query: 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKI 314
+ R GL +++ K R++ T E+ N F LL GP
Sbjct: 190 LER-----GMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGP------ 238
Query: 315 LIYLDSAIMSVSGMRVSLAE-----AIHYARRRHVSGGILIDQPVMKRAIADIALDIAAA 369
L++A ++ + AE A Y R G L ++++ +AD+ +IA
Sbjct: 239 FKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALG 298
Query: 370 TALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429
R+ D+ K+ E + K C A + A E +GG+G +E
Sbjct: 299 LLACLRVGRLKDQGKATPE-------QISLLKRNNCGKALEIARTAREMLGGNGISDEYH 351
Query: 430 IARH 433
I RH
Sbjct: 352 IIRH 355
>gnl|CDD|35362 KOG0140, KOG0140, KOG0140, Medium-chain acyl-CoA dehydrogenase
[Lipid transport and metabolism].
Length = 408
Score = 66.5 bits (162), Expect = 2e-11
Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 33/267 (12%)
Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGR-------- 252
+TE G+D+A I ++ +K D Y ++G K W + ++ + +LA+ +
Sbjct: 147 VTEPGAGSDVAGIKTKAEKKGDE-YIINGSKAWITGAGHANWYFVLARTDPDPKTPAGKA 205
Query: 253 VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEF-------SNTFGFLLGDLNVS 305
F+V E +P GL + + +G R + T + F N G V+
Sbjct: 206 FTAFIV----EGDTP-GLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA 260
Query: 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALD 365
G + + + A ++ + L EA YA R G + + ++ +AD+A++
Sbjct: 261 MGGFDKTRPNV----AAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAIN 316
Query: 366 IAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
+ A ++ A D + S A+ A++ A A A++ GG+G+
Sbjct: 317 LELARLMTRNAAWEVDNGRRNSYYASIAKLFA-------TDTANQAATNAVQIFGGNGFN 369
Query: 426 EERSIARHYRESPANSILLGSGNAMVL 452
+E + + R++ I G+ L
Sbjct: 370 KEYPVEKLMRDAKIYQIYEGTSQIQRL 396
>gnl|CDD|35360 KOG0138, KOG0138, KOG0138, Glutaryl-CoA dehydrogenase [Amino acid
transport and metabolism].
Length = 432
Score = 64.6 bits (157), Expect = 6e-11
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 30/246 (12%)
Query: 201 GLTEKRGGTDIAAITSQGQKISDG-IYCLSGHK-WFLSSPMSDAFIMLAQVE--GRVGCF 256
GLTE G+D + + ++ Y L+G K W +SPM+D F++ A+ E ++ F
Sbjct: 173 GLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGF 232
Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313
++ + G GL +++ K R++AT + LL + GP
Sbjct: 233 ILEK----GMR-GLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGASSLQGPFG--- 284
Query: 314 ILIYLDSAIMSVSGMRVSLAEAI-----HYARRRHVSGGILIDQPVMKRAIADIALDIAA 368
L++A ++ + +E Y R G L ++++ +AD+ +I
Sbjct: 285 ---CLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITL 341
Query: 369 ATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEER 428
RL D+ K+ E + K C A + +A + +GG+G +E
Sbjct: 342 GLQACLRLGRLKDQGKATPE-------QISLLKRNNCGKALEIARQARDMLGGNGISDEY 394
Query: 429 SIARHY 434
+ RH
Sbjct: 395 HVIRHA 400
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 61.7 bits (150), Expect = 5e-10
Identities = 62/254 (24%), Positives = 120/254 (47%), Gaps = 34/254 (13%)
Query: 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVG--- 254
L ++E G+D+ ++ + +K D Y L+G K W + P +D ++ A+ + G
Sbjct: 119 ALAMSEPNAGSDVVSMKLRAEKKGDR-YVLNGSKMWITNGPDADTLVVYAKTDPSAGAHG 177
Query: 255 --CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309
F+V E G P Q+L +K+G R + T EL F + +LG N
Sbjct: 178 ITAFIV----EKGMPGFSRAQKL-DKLGMRGSNTCELVFEDCEVPEENILGGEN------ 226
Query: 310 EDMKILIY-LDSAIMSVSG-----MRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIA 363
+ + +L+ LD + ++G M+ +L AI YA +R G + + +++ +AD+
Sbjct: 227 KGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMY 286
Query: 364 LDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSG 423
+ A+ + + +A + D ++AA I+ + + A V +A++ +GG+G
Sbjct: 287 TRLNASRSYLYTVAKACDRGNMDPKDAAGV-IL------YAAEKATQVALDAIQILGGNG 339
Query: 424 YIEERSIARHYRES 437
YI + R R++
Sbjct: 340 YINDYPTGRLLRDA 353
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 58.6 bits (142), Expect = 5e-09
Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 33/279 (11%)
Query: 202 LTEKRGGTDIAAITSQGQKISDG-IYCLSGHK-WFLSSPMSDAFIMLAQVEG-------- 251
LTE G+D A+I + DG Y L+G K W + ++D F + A+ E
Sbjct: 144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVK 203
Query: 252 -RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNT---FGFLLGDLNVSTG 307
++ F+V R G NG + K+G + + T E+ F + +LG+ V G
Sbjct: 204 DKITAFIVERSFG-GVTNGP----PEKKMGIKGSNTAEVYFEDVKIPVENVLGE--VGDG 256
Query: 308 PVEDMKIL--IYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALD 365
M IL + M+ + +A+ YA R G + + +++ +A++A+
Sbjct: 257 FKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAIL 316
Query: 366 IAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
A ++++ + + D R +A Y I A I+K + + A V+ EA++ GG G++
Sbjct: 317 QYATESMAYMTSGNMD----RGLKAEYQ-IEAAISKVFASEAAWLVVDEAIQIHGGMGFM 371
Query: 426 EERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNL 464
E + R R+ I G+ ++L L T L
Sbjct: 372 REYGVERVLRDLRIFRIFEGTN-----EILRLFIALTGL 405
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 46.4 bits (110), Expect = 2e-05
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 41/265 (15%)
Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVGC----- 255
+TE G+D+A I ++ +K D Y ++G K W + ++ + +LA+ + C
Sbjct: 120 VTEPGAGSDVAGIKTKAEKKGDE-YIINGQKMWITNGGKANWYFLLARSDPDPKCPASKA 178
Query: 256 ---FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDL-----NVSTG 307
F+V + G+ R + +G R S+T G D+ NV G
Sbjct: 179 FTGFIV-----EADTPGIQPGRKELNMGQRC--------SDTRGITFEDVRVPKENVLIG 225
Query: 308 PVEDMKILI-YLDSAIMSVSGMRVSLA-----EAIHYARRRHVSGGILIDQPVMKRAIAD 361
KI + D V+ V LA EA YA R G ++ + + +AD
Sbjct: 226 EGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLAD 285
Query: 362 IALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG 421
+A+ + A R A D + + A+ I K + +A + +A++ GG
Sbjct: 286 MAMKVELARLAYQRAAWEVDSGRRNTYYAS-------IAKAFAADIANQLATDAVQIFGG 338
Query: 422 SGYIEERSIARHYRESPANSILLGS 446
+G+ E + + R++ I G+
Sbjct: 339 NGFNSEYPVEKLMRDAKIYQIYEGT 363
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain.
Central domain of Acyl-CoA dehydrogenase has a
beta-barrel fold.
Length = 52
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVE 250
LTE G+D+A++ + ++ DG L+G KW++++ ++D ++LA+
Sbjct: 1 AFALTEPGAGSDLASLETTAERDGDGWV-LNGRKWWITNAALADLALVLARTG 52
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 34.6 bits (80), Expect = 0.083
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 329 RVSLAEAIHYARRR-----HVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA 383
R +L +A+ Y R R H D P +++ + D+A + AA AL + A + D A
Sbjct: 233 RAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAA 292
Query: 384 ---KSRSEEAAYARIMAPITKYW--CCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435
+ A + ++A + E G S E ++ RH+R
Sbjct: 293 AAAGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWR 349
>gnl|CDD|37785 KOG2574, KOG2574, KOG2574, mRNA splicing factor PRP31 [RNA
processing and modification].
Length = 492
Score = 28.0 bits (62), Expect = 6.4
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 122 RSFEPVVRKQAHKIRAARLYLMAQLEAGH 150
+ P +RK+A ++ AA++ L A+++AGH
Sbjct: 285 QKTPPDLRKKAARLVAAKVTLAARVDAGH 313
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.135 0.399
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,678,767
Number of extensions: 353328
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 22
Length of query: 562
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 463
Effective length of database: 4,124,446
Effective search space: 1909618498
Effective search space used: 1909618498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)