RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein
[Candidatus Liberibacter asiaticus str. psy62]
(562 letters)
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.
Length = 538
Score = 341 bits (877), Expect = 3e-94
Identities = 185/504 (36%), Positives = 276/504 (54%), Gaps = 7/504 (1%)
Query: 26 NQPPLFIGMNAYSSDSLLVALIANFPSVVHKE-LELLGEYVLSCTAQELARMANYNTPQL 84
NQP N + SD L + + + L +G+ + + + EL R+AN N P+L
Sbjct: 10 NQPIPLNNSNLFLSDGALCEAVTREGAGWDSDLLASIGQQLGTAESLELGRLANANPPEL 69
Query: 85 HAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMA 144
Y G+R D V FHPAWH L++ + +H W E R A RAAR L A
Sbjct: 70 LRYDAQGQRLDDVRFHPAWHLLMQGLCANRVHNLAW----EEDARSGAFVARAARFMLHA 125
Query: 145 QLEAGHLMSPSVTSASMVALMTT-PRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLT 203
Q+EAG L ++T A+ L+ P +DW + S YD QK + IG+G+T
Sbjct: 126 QVEAGTLCPITMTFAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMT 185
Query: 204 EKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLE 263
EK+GG+D+ + T++ ++++DG Y L GHKWF S P SDA ++LAQ +G + CF VPR L
Sbjct: 186 EKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDAHLVLAQAKGGLSCFFVPRFLP 245
Query: 264 DGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIM 323
DG N + +RLK+K+GNRSNA+ E+EF + G+LLG+ + M + D A+
Sbjct: 246 DGQRNAIRLERLKDKLGNRSNASSEVEFQDAIGWLLGEEGEGIRLILKMGGMTRFDCALG 305
Query: 324 SVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA 383
S MR + + AI++A +R V G LI+QP+M++ ++ +AL + TAL FRLA ++D
Sbjct: 306 SHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWD-R 364
Query: 384 KSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSIL 443
++ ++EA +AR+ P K+ CK +AEAME +GG GY EE + R YRE P NSI
Sbjct: 365 RADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIW 424
Query: 444 LGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLARF 503
GSGN M LDVL +L K +++ L + G + + L K + R
Sbjct: 425 EGSGNIMCLDVLRVLNKQPGVYDLLSEAFVEVKGQDRHFDRAVRQLQQRLRKPAEEQGRE 484
Query: 504 LTEKIALASSAAALYRAGMNDIAD 527
+T+++ L A + R +A
Sbjct: 485 ITQQLFLLGCGAQMLRHASPPLAQ 508
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 74.2 bits (182), Expect = 9e-14
Identities = 66/281 (23%), Positives = 129/281 (45%), Gaps = 39/281 (13%)
Query: 166 TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIG-LGLTEKRGGTDIAAITSQGQKISDG 224
+P W PK+ + E+ +G +G++E GTD+ + + +K S+G
Sbjct: 134 ASPAQRARWLPKVLTGEH--------------VGAMGMSEPGAGTDVLGMRTTAKKDSNG 179
Query: 225 IYCLSGHK-WFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283
Y L+G K W + ++D F++ A+V+G++ F+V E G+ ++ +K G R+
Sbjct: 180 NYVLNGSKIWITNGTVADVFLIYAKVDGKITAFVV----ERGTKGFTQGPKI-DKCGMRA 234
Query: 284 NATVELEFSNTFGFLLGDLNVSTGPVEDM-KILIYLDSAIMSVSGMRVSLAE-----AIH 337
+ +L F + ++ N+ + M ++ L+ ++++ M V +AE
Sbjct: 235 SHMCQLFFEDV---VVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTS 291
Query: 338 YARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD-EAKSRSEEAAYARIM 396
YA R G + + ++R IA+ D AA AL + ++++ K+R A
Sbjct: 292 YASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFA 351
Query: 397 APITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRES 437
PI K V A++ +GG GY + + R +R++
Sbjct: 352 TPIAK--------KVADSAIQVMGGMGYSRDMPVERLWRDA 384
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 70.3 bits (172), Expect = 1e-12
Identities = 86/368 (23%), Positives = 149/368 (40%), Gaps = 66/368 (17%)
Query: 142 LMAQLEAGHLMSPSVTSASMVALMT--TPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIG 199
LMA G M P ++ + LM + + + K+ S E+ T
Sbjct: 138 LMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGT------------- 184
Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSD-----AFIMLAQVEGRV- 253
+ LTE + GTD+ + ++ + +DG Y ++G K F+S+ D I+LA++ +
Sbjct: 185 MCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLP 244
Query: 254 -----GCFLVPRLL--EDGS----PNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDL 302
FLVPR + DGS N C L+ K+G + ++T +L F N+ G+L+G+
Sbjct: 245 TTKGLSLFLVPRHVVKPDGSLETAKNVKCIG-LEKKMGIKGSSTCQLSFENSVGYLIGEP 303
Query: 303 NVSTGPVEDMK-ILIYLDSAIMSVSGMRVSLAE-----AIHYARRR------------HV 344
N MK + ++++A + + V AE A+ YAR R
Sbjct: 304 N------AGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEK 357
Query: 345 SGGILIDQPVMKRAIADIALDIAAATALSF---RLANSFDEAKSRSEEAAYARIM---AP 398
+I +++ I AL RL + AK + A + P
Sbjct: 358 PADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTP 417
Query: 399 ITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLN-- 456
I K + + ++ GG GYI+ + + R++ ++ G+ LD +
Sbjct: 418 IAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRK 477
Query: 457 -LLEKGTN 463
L KG N
Sbjct: 478 VLSLKGGN 485
>gnl|CDD|178134 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase.
Length = 404
Score = 58.7 bits (142), Expect = 4e-09
Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 20/246 (8%)
Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVGCF-L 257
L ++E G+D+ ++ + +++ DG Y L+G+K W + P++ ++ A+ + G +
Sbjct: 146 LAMSEPNSGSDVVSMKCKAERV-DGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAGSKGI 204
Query: 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY 317
++E G P Q+L +K+G R + T EL F N F + + NV + + +++
Sbjct: 205 TAFIIEKGMPGFSTAQKL-DKLGMRGSDTCELVFENCF---VPEENVLGQEGKGVYVMMS 260
Query: 318 -LDSAIMSVSG-----MRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATA 371
LD + ++ M+ L + Y R+R G + + ++ +AD+ + ++ +
Sbjct: 261 GLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRS 320
Query: 372 LSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIA 431
+ +A D K ++ A + A + A V +A++C+GG+GYI E
Sbjct: 321 YVYSVARDCDNGKVDRKDCAGVILCA-------AERATQVALQAIQCLGGNGYINEYPTG 373
Query: 432 RHYRES 437
R R++
Sbjct: 374 RLLRDA 379
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 54.7 bits (132), Expect = 6e-08
Identities = 61/291 (20%), Positives = 115/291 (39%), Gaps = 54/291 (18%)
Query: 186 TNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIM 245
T ++ ++ A L LTE G+D + T+ + + +Y L+G K F++ +
Sbjct: 108 TAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVY-LNGQKTFITGAKEYPY-- 164
Query: 246 LAQVEGRVGCFLVPRLLEDGSPN-------------GLCYQRLKNKIGNRSNATVELEFS 292
++ R + P G+ L +KIG +T E+
Sbjct: 165 ---------MLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPL-HKIGWHMLSTCEVYLD 214
Query: 293 NT------------FGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYAR 340
N GFL N +M+ LI +A S+ + +A YA
Sbjct: 215 NVEVEESDLVGEEGMGFLNVMYNF------EMERLI---NAARSLGFAECAFEDAARYAN 265
Query: 341 RRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPIT 400
+R G + +++ + +A+ I + +++A D +S R A +
Sbjct: 266 QRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQS-------LRTSAALA 318
Query: 401 KYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMV 451
K +C + A VI +A++ +GG GY +E ++R +R+ I G+ M+
Sbjct: 319 KLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMI 369
>gnl|CDD|149227 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal
domain.
Length = 134
Score = 46.1 bits (110), Expect = 3e-05
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 332 LAEAIHYARRRH--VSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRS-- 387
LA I AR R G L + P + +A+ A +I AA L R A+ R
Sbjct: 15 LAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLERAADRIWAHADRGDE 74
Query: 388 ---EEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435
EE A AR ++A A + GGS ++ + R +R
Sbjct: 75 VTPEERARAR----RDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFWR 121
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.
Length = 380
Score = 43.7 bits (103), Expect = 1e-04
Identities = 56/264 (21%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFI-MLAQVEGRVGCFLVPR 260
+TE G+D+ ++ + + + +Y L+G K F++S +I ++A+ +
Sbjct: 124 ITEPGAGSDVGSLKTTYTRRNGKVY-LNGSKCFITSSAYTPYIVVMARDGASPDKPVYTE 182
Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNA-------TVELEFSNTFG-----FLLGDLNVSTGP 308
D S G+ +L+ K+G R ++ VEL+ + FG F
Sbjct: 183 WFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRV-------- 233
Query: 309 VEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAA 368
E+ +L A+ + + +A YA +R G + +++ A +A+ + +
Sbjct: 234 KEEFDHERFL-VALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNS 292
Query: 369 ATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEER 428
+ + A D S +AA KY+C A V+ AM+ +GG G
Sbjct: 293 MKNMLYEAAWKADNGTITSGDAAMC-------KYFCANAAFEVVDSAMQVLGGVGIAGNH 345
Query: 429 SIARHYRESPANSILLGSGNAMVL 452
I+R +R+ + + GS +L
Sbjct: 346 RISRFWRDLRVDRVSGGSDEMQIL 369
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 42.2 bits (99), Expect = 4e-04
Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 29/265 (10%)
Query: 198 IGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQ---VEGR- 252
+ LTE RGG+D A + + ++ D Y L+G K +S + +DA ++ A+
Sbjct: 116 FAIALTEPRGGSDAARLRLRAERDGDD-YVLNGEKTSISAADQADAAVVFARTGSEAEGA 174
Query: 253 --VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSN---TFGFLLGDLNVSTG 307
+ FLVP L G+ R + G R+ + F N +LG+ G
Sbjct: 175 RGISAFLVPMDLP-----GITRNRF-DCHGQRAIGRGSIFFENVRVPADHMLGNEG--QG 226
Query: 308 PVEDMKILIYLDSAI-MSVSGM-RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALD 365
V+ M+ + + I + V + R +L E Y R G L + +AD
Sbjct: 227 FVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQ 286
Query: 366 IAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
+ AA L + D + EAA K+W K+A VI + + G GY
Sbjct: 287 VEAARLLCLQTLWLKDHGLPHTSEAAMC-------KWWAPKLAYDVIHQCLLTHGHGGY- 338
Query: 426 EERSIARHYRESPANSILLGSGNAM 450
+ + + R+ I G+ M
Sbjct: 339 DRGDMEQRLRDVLGFQIGDGTAQIM 363
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 34.8 bits (80), Expect = 0.055
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 38/246 (15%)
Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLA------QVEGRVG 254
LTE G+D +++ + K+ G + L+G K W +S +D ++ A Q+ G
Sbjct: 148 LTEPDYGSDASSLNTTATKVEGG-WILNGQKRWIGNSTFADVLVIFARNTTTNQING--- 203
Query: 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTG--PVEDM 312
F+V + G+P GL +++NKIG R ++ + F + D + G +D
Sbjct: 204 -FIVKK----GAP-GLKATKIENKIGLRMVQNGDIVLKDVF---VPDEDRLPGVNSFQDT 254
Query: 313 -KILIYLDSAIMSVSGMRVSLAEAIH-----YARRRHVSGGILIDQPVMKRAIADIALDI 366
K+L S +M V+ + ++ ++ Y + R G L + + + + +I
Sbjct: 255 NKVLAV--SRVM-VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNI 311
Query: 367 AAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIE 426
A + +RL ++ K A+ K W K A +A E +GG+G +
Sbjct: 312 QAMFLVGWRLCKLYESGKMTPGHASLG-------KAWITKKARETVALGRELLGGNGILA 364
Query: 427 ERSIAR 432
+ +A+
Sbjct: 365 DFLVAK 370
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase 1 system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide (EPS)
regions that contain the exosortase 1 genome (xrtA), in
genomes that also have numbers of PEP-CTERM domain
(TIGR02595) proteins.
Length = 628
Score = 34.7 bits (80), Expect = 0.064
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 101 PAWHALLRRSIHDGLHCSIWDRSFEPVVRKQA--------HKIR-AARLYLMAQLEAGHL 151
P LRR WD SF P ++R A R ++A + G
Sbjct: 205 PGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAF 264
Query: 152 MSPSVTSASMVALM 165
+S V S+++VALM
Sbjct: 265 LSGGVDSSAVVALM 278
>gnl|CDD|149602 pfam08604, Nup153, Nucleoporin Nup153-like. This family contains
both the nucleoporin Nup153 from human and Nup153 from
fission yeast. These have been demonstrated to be
functionally equivalent.
Length = 519
Score = 29.7 bits (66), Expect = 2.2
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 452 LDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKED 497
L+ L L Q ++ +G+SG ++ ++DS S +D
Sbjct: 26 FKSLDSLHPSPALSCQPSTSSAFPIGTSGFSLVKEIKDSTSQHDDD 71
>gnl|CDD|163289 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106
family. Members of this uncharacterized protein family
are found broadly but sporadically among bacteria. The
N-terminal region is homologous to the Cas4 protein of
CRISPR systems, although this protein family shows no
signs of association with CRISPR repeats.
Length = 457
Score = 28.4 bits (64), Expect = 5.6
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 118 SIW-DRSFEPVVRKQAHKIRAARLYLMA------------QLEAGHLMSPSVTSASMVAL 164
S W D ++EPV+ K + + ++A + G ++ S + +
Sbjct: 99 SAWGDWAYEPVLIKLGKRPKDEYRLVLAFHALLLESFQGVAPKKGLIILRDGNSLKVELI 158
Query: 165 MTTPRVHKD 173
P++ +D
Sbjct: 159 KLLPQLRQD 167
>gnl|CDD|181846 PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.
Length = 714
Score = 27.5 bits (62), Expect = 9.7
Identities = 14/21 (66%), Positives = 14/21 (66%), Gaps = 5/21 (23%)
Query: 309 VEDMKIL---IYLDSAIMSVS 326
VEDMKIL I LD MSVS
Sbjct: 136 VEDMKILFDGIPLDK--MSVS 154
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.135 0.399
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,207,749
Number of extensions: 606670
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 19
Length of query: 562
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 464
Effective length of database: 3,876,889
Effective search space: 1798876496
Effective search space used: 1798876496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)