RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus str. psy62] (562 letters) >gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional. Length = 538 Score = 341 bits (877), Expect = 3e-94 Identities = 185/504 (36%), Positives = 276/504 (54%), Gaps = 7/504 (1%) Query: 26 NQPPLFIGMNAYSSDSLLVALIANFPSVVHKE-LELLGEYVLSCTAQELARMANYNTPQL 84 NQP N + SD L + + + L +G+ + + + EL R+AN N P+L Sbjct: 10 NQPIPLNNSNLFLSDGALCEAVTREGAGWDSDLLASIGQQLGTAESLELGRLANANPPEL 69 Query: 85 HAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMA 144 Y G+R D V FHPAWH L++ + +H W E R A RAAR L A Sbjct: 70 LRYDAQGQRLDDVRFHPAWHLLMQGLCANRVHNLAW----EEDARSGAFVARAARFMLHA 125 Query: 145 QLEAGHLMSPSVTSASMVALMTT-PRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLT 203 Q+EAG L ++T A+ L+ P +DW + S YD QK + IG+G+T Sbjct: 126 QVEAGTLCPITMTFAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMT 185 Query: 204 EKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLE 263 EK+GG+D+ + T++ ++++DG Y L GHKWF S P SDA ++LAQ +G + CF VPR L Sbjct: 186 EKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDAHLVLAQAKGGLSCFFVPRFLP 245 Query: 264 DGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIM 323 DG N + +RLK+K+GNRSNA+ E+EF + G+LLG+ + M + D A+ Sbjct: 246 DGQRNAIRLERLKDKLGNRSNASSEVEFQDAIGWLLGEEGEGIRLILKMGGMTRFDCALG 305 Query: 324 SVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA 383 S MR + + AI++A +R V G LI+QP+M++ ++ +AL + TAL FRLA ++D Sbjct: 306 SHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWD-R 364 Query: 384 KSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSIL 443 ++ ++EA +AR+ P K+ CK +AEAME +GG GY EE + R YRE P NSI Sbjct: 365 RADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIW 424 Query: 444 LGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLARF 503 GSGN M LDVL +L K +++ L + G + + L K + R Sbjct: 425 EGSGNIMCLDVLRVLNKQPGVYDLLSEAFVEVKGQDRHFDRAVRQLQQRLRKPAEEQGRE 484 Query: 504 LTEKIALASSAAALYRAGMNDIAD 527 +T+++ L A + R +A Sbjct: 485 ITQQLFLLGCGAQMLRHASPPLAQ 508 >gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional. Length = 410 Score = 74.2 bits (182), Expect = 9e-14 Identities = 66/281 (23%), Positives = 129/281 (45%), Gaps = 39/281 (13%) Query: 166 TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIG-LGLTEKRGGTDIAAITSQGQKISDG 224 +P W PK+ + E+ +G +G++E GTD+ + + +K S+G Sbjct: 134 ASPAQRARWLPKVLTGEH--------------VGAMGMSEPGAGTDVLGMRTTAKKDSNG 179 Query: 225 IYCLSGHK-WFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283 Y L+G K W + ++D F++ A+V+G++ F+V E G+ ++ +K G R+ Sbjct: 180 NYVLNGSKIWITNGTVADVFLIYAKVDGKITAFVV----ERGTKGFTQGPKI-DKCGMRA 234 Query: 284 NATVELEFSNTFGFLLGDLNVSTGPVEDM-KILIYLDSAIMSVSGMRVSLAE-----AIH 337 + +L F + ++ N+ + M ++ L+ ++++ M V +AE Sbjct: 235 SHMCQLFFEDV---VVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTS 291 Query: 338 YARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD-EAKSRSEEAAYARIM 396 YA R G + + ++R IA+ D AA AL + ++++ K+R A Sbjct: 292 YASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFA 351 Query: 397 APITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRES 437 PI K V A++ +GG GY + + R +R++ Sbjct: 352 TPIAK--------KVADSAIQVMGGMGYSRDMPVERLWRDA 384 >gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional. Length = 622 Score = 70.3 bits (172), Expect = 1e-12 Identities = 86/368 (23%), Positives = 149/368 (40%), Gaps = 66/368 (17%) Query: 142 LMAQLEAGHLMSPSVTSASMVALMT--TPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIG 199 LMA G M P ++ + LM + + + K+ S E+ T Sbjct: 138 LMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGT------------- 184 Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSD-----AFIMLAQVEGRV- 253 + LTE + GTD+ + ++ + +DG Y ++G K F+S+ D I+LA++ + Sbjct: 185 MCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLP 244 Query: 254 -----GCFLVPRLL--EDGS----PNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDL 302 FLVPR + DGS N C L+ K+G + ++T +L F N+ G+L+G+ Sbjct: 245 TTKGLSLFLVPRHVVKPDGSLETAKNVKCIG-LEKKMGIKGSSTCQLSFENSVGYLIGEP 303 Query: 303 NVSTGPVEDMK-ILIYLDSAIMSVSGMRVSLAE-----AIHYARRR------------HV 344 N MK + ++++A + + V AE A+ YAR R Sbjct: 304 N------AGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEK 357 Query: 345 SGGILIDQPVMKRAIADIALDIAAATALSF---RLANSFDEAKSRSEEAAYARIM---AP 398 +I +++ I AL RL + AK + A + P Sbjct: 358 PADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTP 417 Query: 399 ITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLN-- 456 I K + + ++ GG GYI+ + + R++ ++ G+ LD + Sbjct: 418 IAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRK 477 Query: 457 -LLEKGTN 463 L KG N Sbjct: 478 VLSLKGGN 485 >gnl|CDD|178134 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase. Length = 404 Score = 58.7 bits (142), Expect = 4e-09 Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 20/246 (8%) Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVEGRVGCF-L 257 L ++E G+D+ ++ + +++ DG Y L+G+K W + P++ ++ A+ + G + Sbjct: 146 LAMSEPNSGSDVVSMKCKAERV-DGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAGSKGI 204 Query: 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY 317 ++E G P Q+L +K+G R + T EL F N F + + NV + + +++ Sbjct: 205 TAFIIEKGMPGFSTAQKL-DKLGMRGSDTCELVFENCF---VPEENVLGQEGKGVYVMMS 260 Query: 318 -LDSAIMSVSG-----MRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATA 371 LD + ++ M+ L + Y R+R G + + ++ +AD+ + ++ + Sbjct: 261 GLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRS 320 Query: 372 LSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIA 431 + +A D K ++ A + A + A V +A++C+GG+GYI E Sbjct: 321 YVYSVARDCDNGKVDRKDCAGVILCA-------AERATQVALQAIQCLGGNGYINEYPTG 373 Query: 432 RHYRES 437 R R++ Sbjct: 374 RLLRDA 379 >gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional. Length = 381 Score = 54.7 bits (132), Expect = 6e-08 Identities = 61/291 (20%), Positives = 115/291 (39%), Gaps = 54/291 (18%) Query: 186 TNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIM 245 T ++ ++ A L LTE G+D + T+ + + +Y L+G K F++ + Sbjct: 108 TAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVY-LNGQKTFITGAKEYPY-- 164 Query: 246 LAQVEGRVGCFLVPRLLEDGSPN-------------GLCYQRLKNKIGNRSNATVELEFS 292 ++ R + P G+ L +KIG +T E+ Sbjct: 165 ---------MLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPL-HKIGWHMLSTCEVYLD 214 Query: 293 NT------------FGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYAR 340 N GFL N +M+ LI +A S+ + +A YA Sbjct: 215 NVEVEESDLVGEEGMGFLNVMYNF------EMERLI---NAARSLGFAECAFEDAARYAN 265 Query: 341 RRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPIT 400 +R G + +++ + +A+ I + +++A D +S R A + Sbjct: 266 QRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQS-------LRTSAALA 318 Query: 401 KYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMV 451 K +C + A VI +A++ +GG GY +E ++R +R+ I G+ M+ Sbjct: 319 KLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMI 369 >gnl|CDD|149227 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain. Length = 134 Score = 46.1 bits (110), Expect = 3e-05 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 11/111 (9%) Query: 332 LAEAIHYARRRH--VSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRS-- 387 LA I AR R G L + P + +A+ A +I AA L R A+ R Sbjct: 15 LAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLERAADRIWAHADRGDE 74 Query: 388 ---EEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435 EE A AR ++A A + GGS ++ + R +R Sbjct: 75 VTPEERARAR----RDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFWR 121 >gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated. Length = 380 Score = 43.7 bits (103), Expect = 1e-04 Identities = 56/264 (21%), Positives = 109/264 (41%), Gaps = 31/264 (11%) Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFI-MLAQVEGRVGCFLVPR 260 +TE G+D+ ++ + + + +Y L+G K F++S +I ++A+ + Sbjct: 124 ITEPGAGSDVGSLKTTYTRRNGKVY-LNGSKCFITSSAYTPYIVVMARDGASPDKPVYTE 182 Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNA-------TVELEFSNTFG-----FLLGDLNVSTGP 308 D S G+ +L+ K+G R ++ VEL+ + FG F Sbjct: 183 WFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRV-------- 233 Query: 309 VEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAA 368 E+ +L A+ + + +A YA +R G + +++ A +A+ + + Sbjct: 234 KEEFDHERFL-VALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNS 292 Query: 369 ATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEER 428 + + A D S +AA KY+C A V+ AM+ +GG G Sbjct: 293 MKNMLYEAAWKADNGTITSGDAAMC-------KYFCANAAFEVVDSAMQVLGGVGIAGNH 345 Query: 429 SIARHYRESPANSILLGSGNAMVL 452 I+R +R+ + + GS +L Sbjct: 346 RISRFWRDLRVDRVSGGSDEMQIL 369 >gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372 Score = 42.2 bits (99), Expect = 4e-04 Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 29/265 (10%) Query: 198 IGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQ---VEGR- 252 + LTE RGG+D A + + ++ D Y L+G K +S + +DA ++ A+ Sbjct: 116 FAIALTEPRGGSDAARLRLRAERDGDD-YVLNGEKTSISAADQADAAVVFARTGSEAEGA 174 Query: 253 --VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSN---TFGFLLGDLNVSTG 307 + FLVP L G+ R + G R+ + F N +LG+ G Sbjct: 175 RGISAFLVPMDLP-----GITRNRF-DCHGQRAIGRGSIFFENVRVPADHMLGNEG--QG 226 Query: 308 PVEDMKILIYLDSAI-MSVSGM-RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALD 365 V+ M+ + + I + V + R +L E Y R G L + +AD Sbjct: 227 FVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQ 286 Query: 366 IAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425 + AA L + D + EAA K+W K+A VI + + G GY Sbjct: 287 VEAARLLCLQTLWLKDHGLPHTSEAAMC-------KWWAPKLAYDVIHQCLLTHGHGGY- 338 Query: 426 EERSIARHYRESPANSILLGSGNAM 450 + + + R+ I G+ M Sbjct: 339 DRGDMEQRLRDVLGFQIGDGTAQIM 363 >gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase. Length = 412 Score = 34.8 bits (80), Expect = 0.055 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 38/246 (15%) Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLA------QVEGRVG 254 LTE G+D +++ + K+ G + L+G K W +S +D ++ A Q+ G Sbjct: 148 LTEPDYGSDASSLNTTATKVEGG-WILNGQKRWIGNSTFADVLVIFARNTTTNQING--- 203 Query: 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTG--PVEDM 312 F+V + G+P GL +++NKIG R ++ + F + D + G +D Sbjct: 204 -FIVKK----GAP-GLKATKIENKIGLRMVQNGDIVLKDVF---VPDEDRLPGVNSFQDT 254 Query: 313 -KILIYLDSAIMSVSGMRVSLAEAIH-----YARRRHVSGGILIDQPVMKRAIADIALDI 366 K+L S +M V+ + ++ ++ Y + R G L + + + + +I Sbjct: 255 NKVLAV--SRVM-VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNI 311 Query: 367 AAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIE 426 A + +RL ++ K A+ K W K A +A E +GG+G + Sbjct: 312 QAMFLVGWRLCKLYESGKMTPGHASLG-------KAWITKKARETVALGRELLGGNGILA 364 Query: 427 ERSIAR 432 + +A+ Sbjct: 365 DFLVAK 370 >gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. Length = 628 Score = 34.7 bits (80), Expect = 0.064 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 101 PAWHALLRRSIHDGLHCSIWDRSFEPVVRKQA--------HKIR-AARLYLMAQLEAGHL 151 P LRR WD SF P ++R A R ++A + G Sbjct: 205 PGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAF 264 Query: 152 MSPSVTSASMVALM 165 +S V S+++VALM Sbjct: 265 LSGGVDSSAVVALM 278 >gnl|CDD|149602 pfam08604, Nup153, Nucleoporin Nup153-like. This family contains both the nucleoporin Nup153 from human and Nup153 from fission yeast. These have been demonstrated to be functionally equivalent. Length = 519 Score = 29.7 bits (66), Expect = 2.2 Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 452 LDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKED 497 L+ L L Q ++ +G+SG ++ ++DS S +D Sbjct: 26 FKSLDSLHPSPALSCQPSTSSAFPIGTSGFSLVKEIKDSTSQHDDD 71 >gnl|CDD|163289 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats. Length = 457 Score = 28.4 bits (64), Expect = 5.6 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 13/69 (18%) Query: 118 SIW-DRSFEPVVRKQAHKIRAARLYLMA------------QLEAGHLMSPSVTSASMVAL 164 S W D ++EPV+ K + + ++A + G ++ S + + Sbjct: 99 SAWGDWAYEPVLIKLGKRPKDEYRLVLAFHALLLESFQGVAPKKGLIILRDGNSLKVELI 158 Query: 165 MTTPRVHKD 173 P++ +D Sbjct: 159 KLLPQLRQD 167 >gnl|CDD|181846 PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed. Length = 714 Score = 27.5 bits (62), Expect = 9.7 Identities = 14/21 (66%), Positives = 14/21 (66%), Gaps = 5/21 (23%) Query: 309 VEDMKIL---IYLDSAIMSVS 326 VEDMKIL I LD MSVS Sbjct: 136 VEDMKILFDGIPLDK--MSVS 154 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 9,207,749 Number of extensions: 606670 Number of successful extensions: 1126 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1113 Number of HSP's successfully gapped: 19 Length of query: 562 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 464 Effective length of database: 3,876,889 Effective search space: 1798876496 Effective search space used: 1798876496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (26.9 bits)