RPSBLAST alignment of GI: 254780299 and protein with PDBid: 3nf4

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  112 bits (281), Expect = 2e-25
 Identities = 77/365 (21%), Positives = 132/365 (36%), Gaps = 35/365 (9%)

Query: 89  PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148
           P  +R +K E +P    +  +    GL        +    +     ++            
Sbjct: 37  PIVDRHEKDETYP--EGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASV 94

Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208
              +S    S+  + +  T    K W P + S E                   L+E + G
Sbjct: 95  AVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGE-------------QIGAYSLSEPQAG 141

Query: 209 TDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE---GRVGCFLVPRLLED 264
           +D AA+         G Y ++G K W      +D + + A+       V CFLVP     
Sbjct: 142 SDAAALRCAATPTDGG-YVINGSKSWITHGGKADFYTLFARTGEGSRGVSCFLVPA---- 196

Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSA 321
             P GL + + + K+G  +  T    + N        +G+                L  A
Sbjct: 197 DQP-GLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIA 255

Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381
            ++    + +L EA+ YA  R   G  +ID   +   +AD+A  +A A A     A   D
Sbjct: 256 AVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRD 315

Query: 382 EAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANS 441
           + +  S++A+       I K      A  V  +A++  GG GY  +  + R+ RE+    
Sbjct: 316 QGRPYSQQAS-------IAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQ 368

Query: 442 ILLGS 446
           I  G+
Sbjct: 369 IFEGT 373