RPSBLAST alignment of GI: 254780299 and protein with PDBid: 3p4t
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403
Score = 127 bits (321), Expect = 6e-30
Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 20/265 (7%)
Query: 190 PMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQ 248
P + L +TE GG+D+ + ++ D Y ++G K +++S +D + A+
Sbjct: 135 PTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDH-YVINGAKTYITSGVRADYVVTAAR 193
Query: 249 VEG----RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGD 301
G V +V + G+P G R +K+G RS+ T EL +++ L+G
Sbjct: 194 TGGPGAGGVSLIVVDK----GTP-GFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGS 248
Query: 302 LNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIAD 361
N + + + A + +G + L + + R R G LI + ++ +A
Sbjct: 249 ENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAG 308
Query: 362 IALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG 421
+A I A + + ++ K + V +A++ GG
Sbjct: 309 MARRIDVARVYTRHVVERQLAGETN------LIAEVCFAKNTAVEAGEWVANQAVQLFGG 362
Query: 422 SGYIEERSIARHYRESPANSILLGS 446
GY+ E + R YR+ I G+
Sbjct: 363 MGYMAESEVERQYRDMRILGIGGGT 387