RPSBLAST alignment of GI: 254780299 and protein with PDBid: 3pfd

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  120 bits (302), Expect = 8e-28
 Identities = 52/257 (20%), Positives = 109/257 (42%), Gaps = 25/257 (9%)

Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVG 254
            L+E+  G+D A++ ++     D  + L+G K ++++   S  + ++A  +       + 
Sbjct: 137 ALSEREAGSDAASMRTRAVADGDD-WILNGSKCWITNGGKSTWYTVMAVTDPDKGANGIS 195

Query: 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVED 311
            F+V +        G      + K+G + + T EL F N       ++G+    TG    
Sbjct: 196 AFMVHK----DDE-GFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPG--TGFKTA 248

Query: 312 MKILIY--LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAA 369
           +  L +        +V   + +L  AI Y + R   G  + D   ++  +AD+A+ I AA
Sbjct: 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAA 308

Query: 370 TALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429
             + +  A   +  +           ++  +K +   +A  V  +A++  GG GY ++  
Sbjct: 309 RLMVYSAAARAERGEGD------LGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFP 362

Query: 430 IARHYRESPANSILLGS 446
           + R  R++    I  G+
Sbjct: 363 VERMMRDAKITQIYEGT 379