RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus str. psy62] (562 letters) >3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} Length = 541 Score = 285 bits (729), Expect = 2e-77 Identities = 187/512 (36%), Positives = 270/512 (52%), Gaps = 7/512 (1%) Query: 25 LNQPPLFIGMNAYSSDSLLV-ALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQ 83 NQP N Y SD L A+ L +G+ + + + EL R+AN N P+ Sbjct: 9 FNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPE 68 Query: 84 LHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLM 143 L Y G R D V FHPAWH L++ + +H W+ A RAAR L Sbjct: 69 LLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARS----GAFVARAARFMLH 124 Query: 144 AQLEAGHLMSPSVTSAS-MVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGL 202 AQ+EAG L ++T A+ + L P +DW + S YD QK + IG+G+ Sbjct: 125 AQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGM 184 Query: 203 TEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLL 262 TEK+GG+D+ + T++ +++ DG Y L GHKWF S P SDA ++LAQ G + CF VPR L Sbjct: 185 TEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFL 244 Query: 263 EDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAI 322 DG N + +RLK+K+GNRSNA+ E+EF + G+LLG + M + D A+ Sbjct: 245 PDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCAL 304 Query: 323 MSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDE 382 S + MR + + AI++A +RHV G LI QP+M+ ++ +AL + TAL FRLA ++D Sbjct: 305 GSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR 364 Query: 383 AKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSI 442 ++EA +AR+ P K+ CK +AEAME +GG GY EE + R YRE P NSI Sbjct: 365 RA-DAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSI 423 Query: 443 LLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLAR 502 GSGN M LDVL +L K +++ L + G + R L K + L R Sbjct: 424 WEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGR 483 Query: 503 FLTEKIALASSAAALYRAGMNDIADVFLENRF 534 +T ++ L A + + +A + + Sbjct: 484 EITHQLFLLGCGAQMLKYASPPMAQAWCQVML 515 >3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Score = 127 bits (321), Expect = 6e-30 Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 20/265 (7%) Query: 190 PMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQ 248 P + L +TE GG+D+ + ++ D Y ++G K +++S +D + A+ Sbjct: 135 PTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDH-YVINGAKTYITSGVRADYVVTAAR 193 Query: 249 VEG----RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGD 301 G V +V + G+P G R +K+G RS+ T EL +++ L+G Sbjct: 194 TGGPGAGGVSLIVVDK----GTP-GFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGS 248 Query: 302 LNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIAD 361 N + + + A + +G + L + + R R G LI + ++ +A Sbjct: 249 ENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAG 308 Query: 362 IALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG 421 +A I A + + ++ K + V +A++ GG Sbjct: 309 MARRIDVARVYTRHVVERQLAGETN------LIAEVCFAKNTAVEAGEWVANQAVQLFGG 362 Query: 422 SGYIEERSIARHYRESPANSILLGS 446 GY+ E + R YR+ I G+ Sbjct: 363 MGYMAESEVERQYRDMRILGIGGGT 387 >1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Score = 124 bits (313), Expect = 4e-29 Identities = 60/373 (16%), Positives = 133/373 (35%), Gaps = 30/373 (8%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148 P +DK +P L+RR+ GL + + + + Sbjct: 37 PVAAEYDKTGEYP--VPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGV 94 Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208 + + + + + K + ++ + +TE G Sbjct: 95 QTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP-------------LMCAYCVTEPGAG 141 Query: 209 TDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVE---GRVGCFLVPRLLED 264 +D+A I ++ +K D Y ++G K ++++ ++ + +LA+ + + + Sbjct: 142 SDVAGIKTKAEKKGDE-YIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVE 200 Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSA 321 G+ R + +G R + T + F + +L A Sbjct: 201 ADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVA 260 Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381 +V + +L EA YA R G +L++ + +A++A+ + A R A D Sbjct: 261 AGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVD 320 Query: 382 EAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANS 441 + + A+ I K + +A + +A++ +GG+G+ E + + R++ Sbjct: 321 SGRRNTYYAS-------IAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQ 373 Query: 442 ILLGSGNAMVLDV 454 I G+ L V Sbjct: 374 IYGGTSQIQRLIV 386 >1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Score = 122 bits (308), Expect = 1e-28 Identities = 68/378 (17%), Positives = 140/378 (37%), Gaps = 38/378 (10%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPV-VRKQAHKIRAARLYLMAQLE 147 P + D+ ++ + G+ + + H + + + Sbjct: 34 PKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAV 93 Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207 + S + + + + PK+ S EY L ++E Sbjct: 94 GLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA-------------LAMSEPNA 140 Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-------RVGCFLVP 259 G+D+ ++ + +K + Y L+G+K++++ P +D I+ A+ + + F+V Sbjct: 141 GSDVVSMKLKAEKKGNH-YILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVE 199 Query: 260 RLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILI 316 + G P G + +K+G R + T EL F + +LG N + L Sbjct: 200 K----GMP-GFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLE 254 Query: 317 YLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRL 376 L A + M+ L I Y R G + +M+ +AD+ + A + + Sbjct: 255 RLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNV 314 Query: 377 ANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRE 436 A + DE +++ A + + A V + ++C GG+GYI + + R R+ Sbjct: 315 AKACDEGHCTAKDCAGV-------ILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRD 367 Query: 437 SPANSILLGSGNAMVLDV 454 + I G+ L + Sbjct: 368 AKLYEIGAGTSEVRRLVI 385 >3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Score = 121 bits (305), Expect = 4e-28 Identities = 77/371 (20%), Positives = 137/371 (36%), Gaps = 40/371 (10%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSF---EPVVRKQAHKIRAARLYLMAQ 145 P ++WD P + +R G ++ + A I + + Sbjct: 26 PFADQWDNENHFP-YEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSS 84 Query: 146 LEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEK 205 L + A + + + K + PK+ S E+ +TE Sbjct: 85 ALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFG-------------ITEP 131 Query: 206 RGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVGCFLV 258 G+D+ A++S + D + L+G K ++S + +D I A + G + Sbjct: 132 DAGSDVMAMSSTAEDKGDH-WLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIE 190 Query: 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKIL 315 PR G+ L+ K+G+ ++ T EL N +LG V Sbjct: 191 PRNFP-----GIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNH 244 Query: 316 IYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375 L +A V + L AI Y R G + D + + IA +A+++ AA L+++ Sbjct: 245 TRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYK 304 Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435 A + DE + + + KY + AM +G GY E +AR YR Sbjct: 305 AAAAKDEGRLN------NGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYR 358 Query: 436 ESPANSILLGS 446 ++P ++ GS Sbjct: 359 DAPTYYMVEGS 369 >3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Score = 120 bits (302), Expect = 8e-28 Identities = 52/257 (20%), Positives = 109/257 (42%), Gaps = 25/257 (9%) Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVG 254 L+E+ G+D A++ ++ D + L+G K ++++ S + ++A + + Sbjct: 137 ALSEREAGSDAASMRTRAVADGDD-WILNGSKCWITNGGKSTWYTVMAVTDPDKGANGIS 195 Query: 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVED 311 F+V + G + K+G + + T EL F N ++G+ TG Sbjct: 196 AFMVHK----DDE-GFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPG--TGFKTA 248 Query: 312 MKILIY--LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAA 369 + L + +V + +L AI Y + R G + D ++ +AD+A+ I AA Sbjct: 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAA 308 Query: 370 TALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429 + + A + + ++ +K + +A V +A++ GG GY ++ Sbjct: 309 RLMVYSAAARAERGEGD------LGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFP 362 Query: 430 IARHYRESPANSILLGS 446 + R R++ I G+ Sbjct: 363 VERMMRDAKITQIYEGT 379 >2jif_A Short/branched chain specific acyl-COA dehydrogenase; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, acetylation; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Score = 118 bits (297), Expect = 3e-27 Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 22/295 (7%) Query: 165 MTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG 224 + + E P T L+E G+D A+ ++ K D Sbjct: 111 CEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDY 170 Query: 225 IYCLSGHKWFLSSPM-SDAFIMLAQVEGRVG-----CFLVPRLLEDGSPNGLCYQRLKNK 278 Y L+G K ++SS + F+++A V+ +G FLV R +P GL + +NK Sbjct: 171 -YVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDR----DTP-GLHIGKPENK 224 Query: 279 IGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335 +G R+++T L F N +LG + + A + + Sbjct: 225 LGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYT 284 Query: 336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARI 395 I Y + R G L D ++ +A +A + AA L++ A + K +EA+ Sbjct: 285 IPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEAS---- 340 Query: 396 MAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAM 450 + KY+ ++A ++ +E +GG GY ++ + +++R++ +I G+ N Sbjct: 341 ---MAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQ 392 >2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 2.50A {Thermus thermophilus HB8} Length = 372 Score = 118 bits (296), Expect = 4e-27 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 21/251 (8%) Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVGCFLVPR 260 LTE + G+D ++ ++ +++ G + L+G K +++ + + ++++A+ E + FLV + Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGG-FVLNGVKSWITSAGHAHLYVVMARTEKGISAFLVEK 181 Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY 317 G+P GL + R + K+G + T E+ F LLG+ G + L Sbjct: 182 ----GTP-GLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEG--RGLAYALAGLDS 234 Query: 318 --LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375 + A +V R + A YA R G L + + IAD+ + IAAA AL Sbjct: 235 GRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLE 294 Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435 A D + + EA+ A K + A V EA++ +GG GY + + R+YR Sbjct: 295 AARKKDRGERFTLEASAA-------KLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYR 347 Query: 436 ESPANSILLGS 446 ++ I G+ Sbjct: 348 DAKVTEIYEGT 358 >3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Score = 112 bits (281), Expect = 2e-25 Identities = 77/365 (21%), Positives = 132/365 (36%), Gaps = 35/365 (9%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148 P +R +K E +P + + GL + + ++ Sbjct: 37 PIVDRHEKDETYP--EGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASV 94 Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208 +S S+ + + T K W P + S E L+E + G Sbjct: 95 AVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGE-------------QIGAYSLSEPQAG 141 Query: 209 TDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE---GRVGCFLVPRLLED 264 +D AA+ G Y ++G K W +D + + A+ V CFLVP Sbjct: 142 SDAAALRCAATPTDGG-YVINGSKSWITHGGKADFYTLFARTGEGSRGVSCFLVPA---- 196 Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSA 321 P GL + + + K+G + T + N +G+ L A Sbjct: 197 DQP-GLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIA 255 Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381 ++ + +L EA+ YA R G +ID + +AD+A +A A A A D Sbjct: 256 AVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRD 315 Query: 382 EAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANS 441 + + S++A+ I K A V +A++ GG GY + + R+ RE+ Sbjct: 316 QGRPYSQQAS-------IAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQ 368 Query: 442 ILLGS 446 I G+ Sbjct: 369 IFEGT 373 >1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Score = 111 bits (277), Expect = 6e-25 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 22/253 (8%) Query: 203 TEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVG-----CF 256 +E G+D AA+ ++ + D Y L+G K ++S ++ ++ A V + Sbjct: 125 SEPGNGSDAAALKTRAIRQGDH-YVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVAL 183 Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313 +V R G+P G ++ K+G R++ T EL F + LG+ Sbjct: 184 VVER----GTP-GFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTL 238 Query: 314 ILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALS 373 + A SV R +L EA YA+ R G + + ++ + D+ + I A + Sbjct: 239 NKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYT 298 Query: 374 FRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARH 433 + A D+ + +A I K + ++A +A++ GG GY+ E + + Sbjct: 299 YYAAWLADQGLPHAHASA-------IAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKL 351 Query: 434 YRESPANSILLGS 446 R+ N I G+ Sbjct: 352 LRDVKLNQIYEGT 364 >3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Score = 111 bits (277), Expect = 7e-25 Identities = 66/366 (18%), Positives = 126/366 (34%), Gaps = 28/366 (7%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFE-PVVRKQAHKIRAARLYLMAQLE 147 P + E A A+ R GL + P + ++ + A + + Sbjct: 40 PRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGY 97 Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207 + S + + + + PK+ + E GLTE Sbjct: 98 RSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGE-------------WIGCFGLTEPNH 144 Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSP 267 G+D ++ ++ +K+ G Y LSG K ++++ ++ G + + + Sbjct: 145 GSDPGSMVTRARKVPGG-YSLSGSKMWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGC 203 Query: 268 NGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMS 324 GL + K+G R++ T E+ F +L + GP + Y A + Sbjct: 204 KGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYG-IAWGA 262 Query: 325 VSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK 384 + A Y R G L ++++ +AD+ +I RL DE Sbjct: 263 LGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGT 322 Query: 385 SRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILL 444 + E + I K C A + A + +GG+G +E +ARH + Sbjct: 323 AAVEITS-------IMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYE 375 Query: 445 GSGNAM 450 G+ + Sbjct: 376 GTHDIH 381 >2pg0_A Acyl-COA dehydrogenase; GK1316, structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus HTA426} Length = 385 Score = 106 bits (266), Expect = 1e-23 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 24/261 (9%) Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-------R 252 +TE G+D+A I++ K D Y ++G K F++ +D ++ + + Sbjct: 128 AMTEPGAGSDLANISTTAVKDGDY-YIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRG 186 Query: 253 VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309 + +V R +P G R K+G + T EL F + LLG+ + Sbjct: 187 ISLLVVER----DTP-GFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYL 241 Query: 310 EDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAA 369 + L AI + + V + Y ++R G + + ++ +A++A +IA Sbjct: 242 MEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALG 301 Query: 370 TALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429 R+ K E + + K+W +MA V AEAM+ GG GY+EE Sbjct: 302 RTFVDRVIEEHMAGKQIVTEVS-------MAKWWITEMAKRVAAEAMQLHGGYGYMEEYE 354 Query: 430 IARHYRESPANSILLGSGNAM 450 IAR YR+ P ++I G+ M Sbjct: 355 IARRYRDIPVSAIYAGTNEMM 375 >2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, structural genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus HB8} Length = 385 Score = 106 bits (265), Expect = 1e-23 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 16/254 (6%) Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQ-VEGRVGCFLV 258 GLTE GG+D + + L+G K ++++ ++ ++ A+ G V FLV Sbjct: 130 GLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGEVLGFLV 189 Query: 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY- 317 P +P G + +K K+ R++ T EL L + G + L Sbjct: 190 PT----DTP-GFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCLTQA 244 Query: 318 -LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRL 376 A ++ + EA+ +A+ R G L + +++ +A++ L++RL Sbjct: 245 RFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRL 304 Query: 377 ANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRE 436 A DE K + + A K A A + +GGSG E RH Sbjct: 305 ARLKDEGKLTPAQVSLA-------KRQNVWKALQAARMARDILGGSGITLEYHAIRHMLN 357 Query: 437 SPANSILLGSGNAM 450 G+ + Sbjct: 358 LETVYTYEGTHDVH 371 >2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Score = 106 bits (265), Expect = 1e-23 Identities = 67/448 (14%), Positives = 117/448 (26%), Gaps = 73/448 (16%) Query: 70 AQELARMANYNTPQLHAYGPGGERWDKVEF-HPAWHALLRRSIHDGLHCSIWDRS--FEP 126 +E A A +N + G + + +L + RS +E Sbjct: 6 RKERAS-ATFNPELITHILDGSP--ENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEV 62 Query: 127 VVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL-------------MTTPRVHKD 173 V+K A ++ R Y ++ E SV L T + Sbjct: 63 AVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQER 122 Query: 174 WAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISD------GIYC 227 + ++ E T TE GT + + + Sbjct: 123 FFMPAWNLEITGT-------------YAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT 169 Query: 228 LSGHKWFLSS--PMSDAFIMLAQVEGRVG-----CFLVPRLLEDG--SPNGLCYQRLKNK 278 ++ KW+ S+ I+LAQ+ + F+VP G+ + K Sbjct: 170 VTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPK 229 Query: 279 IGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIM--------------S 324 G L+ N L D + L + + + Sbjct: 230 FGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNA 289 Query: 325 VSGMRVSLAEAIHYARRRHVSGGIL-------IDQPVMKRAIADIALDIAAATALSFRLA 377 + + AI Y+ R S +D + + + A + + Sbjct: 290 AQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMK 349 Query: 378 NSFDE-----AKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIAR 432 ++ + E + K + A A I E GG GY I Sbjct: 350 ETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPN 409 Query: 433 HYRESPANSILLGSGNAMVLDVLNLLEK 460 Y G M+L L K Sbjct: 410 IYVTFTPACTFEGENTVMMLQTARFLMK 437 >3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Score = 104 bits (259), Expect = 8e-23 Identities = 71/410 (17%), Positives = 142/410 (34%), Gaps = 45/410 (10%) Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207 A + + + L K + P + + E LTE Sbjct: 112 AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGE-------------KLAAYALTEPGS 158 Query: 208 GTDIAAITSQGQKISDG-IYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGS 266 G+D + + ++G Y L+G K ++++ ++ + + Sbjct: 159 GSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDGEHFSAF---IVEKD 215 Query: 267 PNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY--LDSA 321 G+ + K+G + ++T L + LLG++ G + IL Sbjct: 216 YAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIG--KGHIIAFNILNIGRYKLG 273 Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381 + +V + ++ + YA +R + P+++ +A++A AA + +R F+ Sbjct: 274 VGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFE 333 Query: 382 EAKSRSEEA------------AYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429 S E A I + K + ++ + E ++ GG G++ E Sbjct: 334 SRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYE 393 Query: 430 IARHYRESPANSILLGSGNAMVLDV-LNLLEKG----TNLFEQLFSTLEQDLGSSGKKV- 483 I R YR+S N I G+ L V L K L ++ E+ + ++V Sbjct: 394 IERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMKGELPLLQKAQKLQEELMMMMPEEVG 453 Query: 484 ITILRDSISLCKEDKGLARFLTEKIALASSAAALYRAG--MNDIADVFLE 531 L L K + + +A AL + + +IAD+ Sbjct: 454 DEPLALQKYLVNNAKKIGL-MVAGLAAQKYGKALDKEQEILVNIADIVSN 502 >1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase (flavoprotein); HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Score = 102 bits (255), Expect = 2e-22 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 21/250 (8%) Query: 210 DIAAITSQGQKISDGIYCLSG-HKWFLSSPMSDAFIMLAQVEGRVG-----CFLVPRLLE 263 D + + K DG Y L+G + + +D +I+ A + G F++ Sbjct: 136 DASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILED--- 192 Query: 264 DGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDS 320 G+P G Y + ++K+G ++ T+EL F + +LG+ + Sbjct: 193 -GTP-GFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGV 250 Query: 321 AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSF 380 A ++ +LA+A+ Y+++R G L + +AD+ + I AA L ++ A Sbjct: 251 AAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKK 310 Query: 381 DEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPAN 440 E K + +AA I K +A V EA++ GG GY EE +ARH R++ Sbjct: 311 QEGKPFTVDAA-------IAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKIT 363 Query: 441 SILLGSGNAM 450 I G+ Sbjct: 364 QIYEGTNEVQ 373 >1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Score = 99 bits (248), Expect = 1e-21 Identities = 68/366 (18%), Positives = 132/366 (36%), Gaps = 27/366 (7%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148 P WD+ E P ++R++ G + Sbjct: 40 PNMAEWDQKELFP--VDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTST 97 Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208 +S A M+ + P + + E + LTE G Sbjct: 98 TAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASY-------------CLTEPGSG 144 Query: 209 TDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEGRVGCFLVPRLLEDGSP 267 +D A++ + +K D Y L+G K F+S SD ++++ + G + ++E G+P Sbjct: 145 SDAASLLTSAKKQGDH-YILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTP 203 Query: 268 NGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMS 324 GL + + + K+G S T + F + +G ++ A S Sbjct: 204 -GLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCS 262 Query: 325 VSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK 384 + S+ + R G L ++ +AD+A + AA + A + E + Sbjct: 263 LGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEER 322 Query: 385 SRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILL 444 A + + K + A+ +A++ GG GY+++ ++ ++ R+S + IL Sbjct: 323 KD------AVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILE 376 Query: 445 GSGNAM 450 GS M Sbjct: 377 GSNEVM 382 >3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Score = 99.8 bits (248), Expect = 1e-21 Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 42/342 (12%) Query: 159 ASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQG 218 + H ++ S E S L +E G + + G Sbjct: 102 GLTPINLAAGPQHAEFLAPFLSGEG-----------SPLASLVFSEPGGVANALEKGAPG 150 Query: 219 QK----ISDGIYCLSGHKWFLSS-PMSDAFIMLAQV-----------------EGRVGCF 256 + + + ++G K + ++ D + Sbjct: 151 FQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIIL 210 Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313 + L+ R G+ S + + ++N +L Sbjct: 211 VTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAF 270 Query: 314 ILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGI-LIDQPVMKRAIADIALDIAAATAL 372 + M V MR + A+ +A+ + G + L+++ ++ + + AA AL Sbjct: 271 DGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARAL 330 Query: 373 SFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIAR 432 +++ A++ + + R +A K +C + A + + +G S Y +R + Sbjct: 331 TWKAAHAMENGPGDYDAR---RELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSD 387 Query: 433 HYRESPANSILLGSGNAMVLDVL--NLLEKGTNLFEQLFSTL 472 + I G + L +L+ + + + + Sbjct: 388 LLNTAVVLPIFDGGNVGIRRRHLQQLMLKPTYDAWSSTYGSF 429 >2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus HB8} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Score = 99.1 bits (246), Expect = 2e-21 Identities = 71/371 (19%), Positives = 145/371 (39%), Gaps = 40/371 (10%) Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPV-VRKQAHKIRAARLYLMAQLE 147 PG D+ P L+R+ G+ ++ ++ + + + Sbjct: 28 PGAAERDRTGAFP--WDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGAL 85 Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207 A + S + + + L + + + PK+ S E GLTE Sbjct: 86 ALTVASHNSLATGHILLAGSEAQKEAFLPKLASGE-------------ALGAWGLTEPGS 132 Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGR---------VGCFLV 258 G+D AA+ ++ +K+ G ++ ++ ++++A+ + + F Sbjct: 133 GSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAF 192 Query: 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKIL 315 R GL R + K+G ++ T +L + F LLG+ V + Sbjct: 193 FR-----PERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDG 247 Query: 316 IYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375 + A M+V + +L A+ YA+ R G + + + +A+ A ++ AA L + Sbjct: 248 GRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLK 307 Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435 A D + + EAA A K + + A EA++ +GG GY+++ + R++R Sbjct: 308 AAELKDAGRPFTLEAAQA-------KLFASEAAVKACDEAIQILGGYGYVKDYPVERYWR 360 Query: 436 ESPANSILLGS 446 ++ I G+ Sbjct: 361 DARLTRIGEGT 371 >3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Score = 98.3 bits (244), Expect = 4e-21 Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 11/316 (3%) Query: 146 LEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEK 205 L A S A + L + +W A+ Sbjct: 88 LLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVV-----C 142 Query: 206 RGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVGCFLVPRLLED 264 G D + + G + LSG K +S +P+ F++ A+ +G G + + Sbjct: 143 SGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVT 202 Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTFGF---LLGDLNVSTGPVEDMKILIYLDSA 321 G + +G R++ TV++ F + +L V + + Sbjct: 203 RDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVS 262 Query: 322 I--MSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANS 379 + + V + + A+ RR V + AL A +AL+ A S Sbjct: 263 VLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALS 322 Query: 380 FDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPA 439 D + E K ++AP ++++ + +GG+ Y +AR R+ A Sbjct: 323 ADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQA 382 Query: 440 NSILLGSGNAMVLDVL 455 + +D L Sbjct: 383 GRFMQPYAYVDAVDFL 398 >2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Score = 93.3 bits (231), Expect = 1e-19 Identities = 72/334 (21%), Positives = 126/334 (37%), Gaps = 19/334 (5%) Query: 141 YLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGL 200 Y +A E + + S+ + + K + + P Sbjct: 70 YAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEP 129 Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPR 260 G G A + +G + W S+ + A A + FLVP Sbjct: 130 GNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPM 189 Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY 317 +P GL + ++K+G R ++T L F + +LG+ + + Sbjct: 190 ----PTP-GLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGR 244 Query: 318 LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLA 377 + A ++ + +L A++YA R G L V++ +AD+AL + +A L++R A Sbjct: 245 IGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAA 304 Query: 378 NSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRES 437 D K +EAA A K + A A+ +A++ +GG GY+ E RHYR++ Sbjct: 305 MLKDNKKPFIKEAAMA-------KLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDA 357 Query: 438 PANSILLGSGNAMVLD----VLNLLEKGTNLFEQ 467 I G+ L +L NL+ Q Sbjct: 358 RITEIYEGTSEIQRLVIAGHLLRSYRSAENLYFQ 391 >1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Score = 90.4 bits (223), Expect = 9e-19 Identities = 48/302 (15%), Positives = 98/302 (32%), Gaps = 20/302 (6%) Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208 +M+ +A V + + ++ S + +E++ G Sbjct: 72 RSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVG--------------FSERQAG 117 Query: 209 TDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPN 268 +D++A+ ++ + D W ++ +D ++ E G +V G Sbjct: 118 SDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAVVVVPADTPGVRV 177 Query: 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328 + + ++ ++ L G V A V + Sbjct: 178 ERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGIL 237 Query: 329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE 388 R A+ +AR R G L D ++ IAD+ A + ++ +DE Sbjct: 238 RACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMV 297 Query: 389 EAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGN 448 A + K+ + A A A A + + +G E + R YR++ I+ GS Sbjct: 298 PAT------ILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSE 351 Query: 449 AM 450 Sbjct: 352 MC 353 >1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Score = 88.3 bits (218), Expect = 5e-18 Identities = 53/436 (12%), Positives = 104/436 (23%), Gaps = 62/436 (14%) Query: 159 ASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQG 218 + T K W + TE G+++ + + Sbjct: 107 VPAIKGQGTEEQQKKWLSLANKMQIIGC-------------YAQTELGHGSNVQGLETTA 153 Query: 219 QKISDG------IYCLSGHKWFLSS--PMSDAFIMLAQV-----EGRVGCFLVPRLLEDG 265 + KW+ +S ++ A++ + + F+V + Sbjct: 154 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 213 Query: 266 --SPNGLCYQRLKNKI---GNRSNATVELEFSNTF---GFLLGDLN------------VS 305 + + K+ S L F + +L L+ V Sbjct: 214 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVP 273 Query: 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSG-------GILIDQPVMKRA 358 V + + + + + ++ A Y+ R G +ID + Sbjct: 274 KQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNR 333 Query: 359 IADIALDIAAATALSFRLANSFDEAKSRSEEA-----AYARIMAPITKYWCCKMAPAVIA 413 + + A + L + + R + A K I Sbjct: 334 LFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIE 393 Query: 414 EAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLE 473 E + GG GY+ + + G + L V L K + Sbjct: 394 ECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVG 453 Query: 474 QDLGSSGKKVITILRDSI----SLCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVF 529 + R + D L F + +A + A N Sbjct: 454 TTAYMGRAAHLLQCRSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQ 513 Query: 530 LENRFLDNCHSTHCML 545 L HC L Sbjct: 514 ELLADLVEAAIAHCQL 529 >1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Score = 87.7 bits (216), Expect = 7e-18 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 16/233 (6%) Query: 226 YCLSGHKW-FLSSPMSDAFIMLAQVE-GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283 Y L+G K +SPM+D F++ A+ E G + FL+ + + GL R++ K R+ Sbjct: 158 YTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMR-----GLSAPRIQGKFSLRA 212 Query: 284 NATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY--LDSAIMSVSGMRVSLAEAIHYARR 341 +AT + L ++ L A + L A YA Sbjct: 213 SATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALD 272 Query: 342 RHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITK 401 R G L ++++ +AD+ +I +L D+ K+ E + K Sbjct: 273 RMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLL-------K 325 Query: 402 YWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDV 454 C A + +A + +GG+G +E + RH A + G+ + L + Sbjct: 326 RNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALIL 378 >2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Score = 84.9 bits (209), Expect = 4e-17 Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 17/233 (7%) Query: 226 YCLSGHKWFLSS-PMSDAFIMLAQVEGR-VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283 Y L+G K ++S+ + F + A+V+G FLV R +P GL + + K+G ++ Sbjct: 173 YILNGVKQWISNAGFAHLFTVFAKVDGEHFTAFLVER----DTP-GLSFGPEEKKMGIKA 227 Query: 284 NATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYAR 340 ++T ++ + +LG++ ++ + +V G + +L + YA Sbjct: 228 SSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYAT 287 Query: 341 RRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA-------KSRSEEAAYA 393 +R G + ++++ + ++A I AA + +R DEA ++ Sbjct: 288 QRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEY 347 Query: 394 RIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGS 446 + A I K ++ V+ E ++ GG GY +E I R YR++ N I G+ Sbjct: 348 AVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGT 400 >2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; alternative splicing, fatty acid metabolism, transit peptide, disease mutation, lipid metabolism; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Score = 83.0 bits (204), Expect = 1e-16 Identities = 52/299 (17%), Positives = 113/299 (37%), Gaps = 15/299 (5%) Query: 226 YCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNA 285 + + + V+ ++ F+V R G+ + + K+G +++ Sbjct: 204 NGGLADIFTVFAKTPVTDPATGAVKEKITAFVVER-----GFGGITHGPPEKKMGIKASN 258 Query: 286 TVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRR 342 T E+ F +LG++ + A MR +A+A+ +A R Sbjct: 259 TAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNR 318 Query: 343 HVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKY 402 G + + +++ +A + + ++++ ++ + D+ A +I A I+K Sbjct: 319 TQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQ------GATDFQIEAAISKI 372 Query: 403 WCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDV-LNLLEKG 461 + + A V E ++ +GG G+++E + R R+ I G+ + + L V L Sbjct: 373 FGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 432 Query: 462 TNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLARFLTEKIALASSAAALYRA 520 L S L+ G++G + + GL+ L+ S RA Sbjct: 433 GKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSGELAVRA 491 >2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabolism, lipid metabolism; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Score = 80.1 bits (196), Expect = 1e-15 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 9/189 (4%) Query: 268 NGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKI--LIYLDSAIMSV 325 GL ++ NKIG R ++ N F L + K+ + + A + Sbjct: 237 PGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPI 296 Query: 326 SGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS 385 Y + R G L + ++ + + ++ A + +RL ++ + Sbjct: 297 GISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQM 356 Query: 386 RSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLG 445 +A+ + K W A + E +GG+G + + +A+ + + G Sbjct: 357 TPGQAS-------LGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409 Query: 446 SGNAMVLDV 454 + + L Sbjct: 410 TYDINTLVT 418 >2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Score = 71.3 bits (173), Expect = 5e-13 Identities = 36/256 (14%), Positives = 67/256 (26%), Gaps = 20/256 (7%) Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE--GRVGCF 256 + + DG Y L G F S + + A V Sbjct: 120 IWGEDNDTWMASPYAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIAT 179 Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313 + + + + IG R + +L F L V G + Sbjct: 180 PSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEA 239 Query: 314 ILIYLDSAIMSVSGMRVSLAEAIHYARRRHV-------------SGGILIDQPVMKRAIA 360 + + + A+ + +G + + P + AI Sbjct: 240 GRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIG 299 Query: 361 DIALDIAAATALSFRLANSFDEAKSRSEEA-AYARIMAPITKYWCCKMAPAVIAEAMECI 419 + A +I A+ A+ F + +E R + T+ A E Sbjct: 300 ESAAEINASRVSLIETADRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARA 359 Query: 420 GGSGYIEERSIARHYR 435 GG + + R +R Sbjct: 360 GGGALHYKTPMQRFWR 375 >3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Score = 70.8 bits (173), Expect = 7e-13 Identities = 39/350 (11%), Positives = 84/350 (24%), Gaps = 30/350 (8%) Query: 99 FHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLM-SPSVT 157 P +L DG+ S + P R ++ ++ AG P Sbjct: 48 HRPDLQDVLTFVDADGVRRSRQWQD--PKDAAGLRVKRKYHETILREIAAGSYGRLPDAH 105 Query: 158 SASMVALMTTPRVHKDWAPKIFSREYDPTNKA---PMQKTSVAIGLGLTEKRGGTDIAAI 214 + + P V + + R +++ + L + + A Sbjct: 106 NYTFTTYADDPEVWEKQSIGAEGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAA 165 Query: 215 TSQGQ-----KISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVG-----CFLVPR--- 260 ++ + +D ++G K + D + + +P Sbjct: 166 QARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTP 225 Query: 261 --LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILI-- 316 + F N F + V + L Sbjct: 226 GVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVF---IPWEQVFHIGNPEHAKLYPQ 282 Query: 317 -YLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375 D + +V AE I P + +A + A A Sbjct: 283 RIFDWVHYHILIRQVLRAELIVGLAILITEHIGTSKLPTVSARVAKLVAFHLAMQAHLIA 342 Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425 + K ++ + + +V+ E ++ G S + Sbjct: 343 SEETGFHTKG--GRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLM 390 >2wbi_A Acyl-COA dehydrogenase family member 11; human, polymorphism, phosphoprotein, oxidoreductase, alternative splicing; HET: FAD; 2.80A {Homo sapiens} Length = 428 Score = 69.7 bits (169), Expect = 2e-12 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 19/237 (8%) Query: 223 DGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPR-------LLEDGSPNGLCYQRL 275 D + K + SS + +A V GR + R L+ +P + L Sbjct: 174 DEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPL 233 Query: 276 KNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY------LDSAIMSVSGMR 329 + G N + + N+ G +I + + +V Sbjct: 234 -SVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAE 292 Query: 330 VSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEE 389 +L A +R L V+ IA+ + I L+ + A+S D Sbjct: 293 RALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG----- 347 Query: 390 AAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGS 446 +A A+ + K + ++ A++ GG+G ++ +A Y + + G Sbjct: 348 SAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGP 404 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 68.0 bits (166), Expect = 6e-12 Identities = 102/642 (15%), Positives = 175/642 (27%), Gaps = 264/642 (41%) Query: 18 PSDSLFALNQPPL---FIGMNAYSSDSLLVALIANFPSVVHKELELLGEYVLSCTAQELA 74 P+ S F +Q L F + A + EL+G++ L + + Sbjct: 23 PTASFFIASQ--LQEQFN--KILPEPTEGFAADDEPTTPA----ELVGKF-LGYVSSLVE 73 Query: 75 RMANYNTPQ-----LHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVR 129 Q L + E + L IH + + + + Sbjct: 74 PSKVGQFDQVLNLCLTEF----EN----CY------LEGNDIHALAAKLLQEN--DTTLV 117 Query: 130 KQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKA 189 K I+ Y+ A + S AL R + A Sbjct: 118 KTKELIKN---YI----TARIMAKRPFDKKSNSALF---RAVGE-------------GNA 154 Query: 190 PMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQV 249 + VAI GG QG + +F + L Q Sbjct: 155 QL----VAI-------FGG--------QG----------NTDDYF------EELRDLYQT 179 Query: 250 EGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDL-----NV 304 + L++ + L R+ E F+ G ++ N Sbjct: 180 ---YHVLVGD-LIKFSAE---TLSEL-----IRTTLDAEKVFTQ--GL---NILEWLENP 222 Query: 305 STGPVEDMKILIYLDSAIMSVS----GMRVSLAEAIHYA---R---------RRHVSG-- 346 S P +D YL S +S G+ + LA HY + R ++ G Sbjct: 223 SNTPDKD-----YLLSI--PISCPLIGV-IQLA---HYVVTAKLLGFTPGELRSYLKGAT 271 Query: 347 ----GILIDQPVMKRAIADIALDIAAATALSFRLANSFDE-AKS----------RSEEAA 391 G++ A+A IA S+ SF + R EA Sbjct: 272 GHSQGLVT-------AVA-----IAETD--SWE---SFFVSVRKAITVLFFIGVRCYEAY 314 Query: 392 YARIMAPITKYWCCKMAPAVIAEAMECIGGSG------------------YI-------- 425 P T + P+++ +++E G Y+ Sbjct: 315 ------PNTS-----LPPSILEDSLE--NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361 Query: 426 EER--SIARHYRESPANSILLGSGNAMVLDVLNL-LEKGTNLFEQLFSTLEQD-LGSSGK 481 + I+ N ++ SG L LNL L K S L+Q + S + Sbjct: 362 AGKQVEISLV--NGAKNLVV--SGPPQSLYGLNLTLRKAKAP-----SGLDQSRIPFSER 412 Query: 482 KV--------ITI------LRDSISLCKEDKGLARFLTEKIALASS--AAALY------- 518 K+ + L + L +D L + ++ + +Y Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKD--LVK---NNVSFNAKDIQIPVYDTFDGSD 467 Query: 519 -RAGMNDIADVFLENRFLDNCH---STHCMLHGRFNAAHIID 556 R I++ ++ +T F A HI+D Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQ------FKATHILD 503 Score = 56.1 bits (135), Expect = 2e-08 Identities = 101/663 (15%), Positives = 192/663 (28%), Gaps = 313/663 (47%) Query: 2 TLREIYRRLAMNQVHQPSDSLFALNQPPL--------FIG-------------------- 33 L+E + + + +P++ FA + P F+G Sbjct: 32 QLQEQFNK----ILPEPTEG-FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86 Query: 34 -MNAYSSD--------SLLVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQL 84 + + + +L L+ + + K EL+ Y+ + MA Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR------IMAKRPFD-- 138 Query: 85 HAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIW---------DRSFEPVVRKQAHKI 135 + AL R++ +G + + D FE ++ Sbjct: 139 -------------KKSN--SALF-RAVGEG-NAQLVAIFGGQGNTDDYFE--------EL 173 Query: 136 RAARLYLMAQLEAGHLMSPSVTSASMV--ALMTTPRVHKDWAPKIFSREYD--------- 184 R LY L+ + ++ L+ T A K+F++ + Sbjct: 174 R--DLYQTYH----VLVGDLIKFSAETLSELIRTT----LDAEKVFTQGLNILEWLENPS 223 Query: 185 --PTN----KAPMQKTSVA-IG-------------LGLT--EKRGGTDIAAIT--SQGQK 220 P P+ S IG LG T E R + + T SQG Sbjct: 224 NTPDKDYLLSIPI---SCPLIGVIQLAHYVVTAKLLGFTPGELR--SYLKGATGHSQG-- 276 Query: 221 I--------SDGIYCLSGHKWFLSSPMSDAFIMLAQ--VEG--RVGC---------FLVP 259 + +D S W ++F + + + +G L P Sbjct: 277 LVTAVAIAETD-----S---W-------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321 Query: 260 RLLED------GSP------NGLCYQRLKNKIG--NR---SNATVELEFSNTFGFLLGDL 302 +LED G P + L +++++ + N + VE+ N G Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAK 375 Query: 303 N-VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQ---PVMKRA 358 N V +GP + S+ G+ ++L R+ G +DQ P +R Sbjct: 376 NLVVSGPPQ-------------SLYGLNLTL-------RKAKAPSG--LDQSRIPFSER- 412 Query: 359 IADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPI-TKYWCCKMAPAVIAEAME 417 L F N F + +P + + PA ++ Sbjct: 413 ------------KLKFS--NRF------------LPVASPFHSHL----LVPA--SDL-- 438 Query: 418 CIGGSGYIEERSIARHYRESPANSILL-------GSGNAMVLDVLNLLEKGTNLFEQLFS 470 I + + ++ A I + GS +L ++ E++ Sbjct: 439 -------INKD-LVKNNVSFNAKDIQIPVYDTFDGS---------DLRVLSGSISERIVD 481 Query: 471 --TLEQ---------------DLG---SSGKKVITILRDSISLCKEDKGLARFLTEKIAL 510 D G +SG V+T R+ K+ G+ ++ + Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT-HRN-----KDGTGV------RVIV 529 Query: 511 ASS 513 A + Sbjct: 530 AGT 532 Score = 27.6 bits (61), Expect = 8.7 Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 90/276 (32%) Query: 279 IGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHY 338 + NR++ F +T+GF + D+ V PV + I+ G R+ Sbjct: 1645 VWNRADN----HFKDTYGFSILDI-VINNPV---NLTIHFGGE----KGKRI-------- 1684 Query: 339 ARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS-RSEEAAYARIMA 397 R + S I I D L T F+ N + + RSE+ + Sbjct: 1685 --RENYSAMIF-------ETIVDGKLK----TEKIFKEINEHSTSYTFRSEKG-----LL 1726 Query: 398 PITKYWCCKMAPAV-IAE--AMECIGGSGYIEERSIARHYRESPANSILLG------SGN 448 T++ PA+ + E A E + G I PA++ G + Sbjct: 1727 SATQF----TQPALTLMEKAAFEDLKSKGLI------------PADATFAGHSLGEYAAL 1770 Query: 449 AMVLDVLNLLEKGTNLFEQLF---STLE-----QDLGSSGKKVITIL--RDSISLCKEDK 498 A + DV+++ +L E +F T++ +LG S +I I R + S +E Sbjct: 1771 ASLADVMSI----ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-- 1824 Query: 499 GLARFLTEKIALASSAAALYRAG-MNDIADVFLENR 533 +++ E++ R G + +I + +EN+ Sbjct: 1825 -ALQYVVERVG--------KRTGWLVEIVNYNVENQ 1851 >2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: 1PS; 1.65A {Rhodococcus SP} Length = 394 Score = 67.8 bits (164), Expect = 6e-12 Identities = 39/255 (15%), Positives = 75/255 (29%), Gaps = 20/255 (7%) Query: 207 GGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGS 266 + ++ DG Y ++G + S ++ +L + V + Sbjct: 114 VRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKD-GRPVDFVSFLIP 172 Query: 267 PNGLCYQRLKNKIGNRSNATVELEFSNT-------------FGFLLGDLNVSTGPVEDMK 313 + N +G R + + + L +T PV M Sbjct: 173 REDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMP 232 Query: 314 ILIYLDSAI--MSVSGMRVSLAEAIHYARRR---HVSGGILIDQPVMKRAIADIALDIAA 368 + I V + + + +R +G D P K IA+ + DI A Sbjct: 233 WGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDA 292 Query: 369 ATALSFRLANSFDEAKSRSEEAAY-ARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEE 427 A EE + R+ A + A + I + E G + Sbjct: 293 AWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANG 352 Query: 428 RSIARHYRESPANSI 442 + R +R++ A + Sbjct: 353 TPLQRFWRDAHAGRV 367 >2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase component; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Score = 64.3 bits (155), Expect = 6e-11 Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 3/190 (1%) Query: 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328 G +L N + + G S + + +S+ Sbjct: 219 GSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIA 278 Query: 329 RVSLAEAIHYARRRHVS--GGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR 386 + R R + G + IA+ +AAA AL + Sbjct: 279 ERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLN 338 Query: 387 SEEA-AYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLG 445 + + + KM + M G + +++ + R +R++ Sbjct: 339 HQYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAY 398 Query: 446 SGNAMVLDVL 455 + + +L Sbjct: 399 TDYDVCAQIL 408 >2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* Length = 439 Score = 61.8 bits (148), Expect = 4e-10 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 3/85 (3%) Query: 371 ALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSI 430 L ++ + ++ + MA TK + +A + +AM+ +G Y ++ S Sbjct: 332 LLVWKAVTTLEDEALEWKVKLE---MAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSF 388 Query: 431 ARHYRESPANSILLGSGNAMVLDVL 455 R E + G + + Sbjct: 389 PRLLNEVMCYPLFDGGNIGLRRRQM 413 >2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus HB8} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Score = 52.3 bits (125), Expect = 2e-07 Identities = 63/396 (15%), Positives = 114/396 (28%), Gaps = 76/396 (19%) Query: 84 LHAYGP----GGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVR---------- 129 L P GE+ + HP R + +++D +P R Sbjct: 12 LKTRPPNLWYKGEKVEDPTTHPV----FRGIVR--TMAALYDLQHDPRYREVLTYEEEGK 65 Query: 130 -----------KQAHKIRAARLYLMAQLEAGHL-MSPSVTSASMVALMTTPRVHKDWAPK 177 K+ K R L A G + SP +A ++A + ++A Sbjct: 66 RHGMSFLIPKTKEDLKRRGQAYKLWADQNLGMMGRSPDYLNAVVMAYAASADYFGEFAEN 125 Query: 178 IFSREYDPTNKAPMQKTSVAIGLGLTEKRG-------GTDIAAITSQGQKISDGIYCLSG 230 + R Y ++ +A LT + G I K ++ + G Sbjct: 126 V--RNYYR----YLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRG 179 Query: 231 HKWFLSSPMSDAFIMLAQV------EGRVGCFLVPRLLEDGSPNGLCYQRLK-------- 276 + + P++D ++ + E F +P +P R Sbjct: 180 ARMTATFPLADEVLIFPSILLQAGSEKYALAFALPT----STPGLHFVCREALVGGDSPF 235 Query: 277 --NKIGNRSNATVELEFSNTF-----GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMR 329 + F + F+LG++ + L + V ++ Sbjct: 236 DHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNH---MAHQVVALK 292 Query: 330 VSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEE 389 + EA G ++ IA+I + + A A R E Sbjct: 293 TAKTEAFLGVAALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENA--YGL 350 Query: 390 AAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425 R + ++ P I E +E IG SG I Sbjct: 351 LVPDRGALDGARNLYPRLYP-RIREILEQIGASGLI 385 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.6 bits (78), Expect = 0.066 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Query: 388 EEAAYARIMAPITKYWCCKMAPAV-IAEAME 417 E+ A ++ A + K + APA+ I ME Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKATME 47 Score = 31.5 bits (70), Expect = 0.56 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 6/33 (18%) Query: 130 KQAHKIRAARLYLMAQLEAGHLMSPSVT-SASM 161 KQA K A L L A A P++ A+M Sbjct: 19 KQALKKLQASLKLYADDSA-----PALAIKATM 46 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 24/51 (47%) Query: 473 EQDLGSSGKKVITILRDSISLCKEDKGLARFLTEKIALASSAAAL-YRAGM 522 +Q L KK L+ S+ L +D SA AL +A M Sbjct: 19 KQAL----KK----LQASLKLYADD---------------SAPALAIKATM 46 >3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899 Score = 30.5 bits (68), Expect = 0.95 Identities = 8/49 (16%), Positives = 16/49 (32%) Query: 91 GERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAAR 139 + +F AW LL+ HD + D ++ + + Sbjct: 332 TGDYPHDQFDYAWKTLLQNHPHDSICGCSVDEVHRGMMTRFENANDVGH 380 >2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923 Score = 28.2 bits (62), Expect = 4.8 Identities = 6/49 (12%), Positives = 14/49 (28%) Query: 91 GERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAAR 139 + + AW L++ HD + D ++ + Sbjct: 352 TSTYPHDQLRYAWKTLMQNHPHDSICGCSVDSVHREMMTRFEKAYEVGH 400 >2f9q_A CYPIID6, cytochrome P450 2D6, P450-DB1; HAEM, oxidoreductase; HET: HEM; 3.00A {Homo sapiens} Length = 479 Score = 27.4 bits (59), Expect = 8.6 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 1/133 (0%) Query: 47 IANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHAL 106 +A P VV L + E L ++ A Q+ +GP + + PAW Sbjct: 51 LAWTPVVVLNGLAAVRE-ALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQ 109 Query: 107 LRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMT 166 R S+ + + +S E V ++A + AA + + + S + +L Sbjct: 110 RRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTC 169 Query: 167 TPRVHKDWAPKIF 179 R D + Sbjct: 170 GRRFEYDDPRFLR 182 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0642 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,802,662 Number of extensions: 223160 Number of successful extensions: 602 Number of sequences better than 10.0: 1 Number of HSP's gapped: 552 Number of HSP's successfully gapped: 44 Length of query: 562 Length of database: 5,693,230 Length adjustment: 97 Effective length of query: 465 Effective length of database: 3,341,562 Effective search space: 1553826330 Effective search space used: 1553826330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.7 bits)