RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein
[Candidatus Liberibacter asiaticus str. psy62]
(562 letters)
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli}
Length = 541
Score = 285 bits (729), Expect = 2e-77
Identities = 187/512 (36%), Positives = 270/512 (52%), Gaps = 7/512 (1%)
Query: 25 LNQPPLFIGMNAYSSDSLLV-ALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQ 83
NQP N Y SD L A+ L +G+ + + + EL R+AN N P+
Sbjct: 9 FNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPE 68
Query: 84 LHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLM 143
L Y G R D V FHPAWH L++ + +H W+ A RAAR L
Sbjct: 69 LLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARS----GAFVARAARFMLH 124
Query: 144 AQLEAGHLMSPSVTSAS-MVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGL 202
AQ+EAG L ++T A+ + L P +DW + S YD QK + IG+G+
Sbjct: 125 AQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGM 184
Query: 203 TEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLL 262
TEK+GG+D+ + T++ +++ DG Y L GHKWF S P SDA ++LAQ G + CF VPR L
Sbjct: 185 TEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFL 244
Query: 263 EDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAI 322
DG N + +RLK+K+GNRSNA+ E+EF + G+LLG + M + D A+
Sbjct: 245 PDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCAL 304
Query: 323 MSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDE 382
S + MR + + AI++A +RHV G LI QP+M+ ++ +AL + TAL FRLA ++D
Sbjct: 305 GSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR 364
Query: 383 AKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSI 442
++EA +AR+ P K+ CK +AEAME +GG GY EE + R YRE P NSI
Sbjct: 365 RA-DAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSI 423
Query: 443 LLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLAR 502
GSGN M LDVL +L K +++ L + G + R L K + L R
Sbjct: 424 WEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGR 483
Query: 503 FLTEKIALASSAAALYRAGMNDIADVFLENRF 534
+T ++ L A + + +A + +
Sbjct: 484 EITHQLFLLGCGAQMLKYASPPMAQAWCQVML 515
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 127 bits (321), Expect = 6e-30
Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 20/265 (7%)
Query: 190 PMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQ 248
P + L +TE GG+D+ + ++ D Y ++G K +++S +D + A+
Sbjct: 135 PTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDH-YVINGAKTYITSGVRADYVVTAAR 193
Query: 249 VEG----RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGD 301
G V +V + G+P G R +K+G RS+ T EL +++ L+G
Sbjct: 194 TGGPGAGGVSLIVVDK----GTP-GFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGS 248
Query: 302 LNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIAD 361
N + + + A + +G + L + + R R G LI + ++ +A
Sbjct: 249 ENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAG 308
Query: 362 IALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG 421
+A I A + + ++ K + V +A++ GG
Sbjct: 309 MARRIDVARVYTRHVVERQLAGETN------LIAEVCFAKNTAVEAGEWVANQAVQLFGG 362
Query: 422 SGYIEERSIARHYRESPANSILLGS 446
GY+ E + R YR+ I G+
Sbjct: 363 MGYMAESEVERQYRDMRILGIGGGT 387
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 124 bits (313), Expect = 4e-29
Identities = 60/373 (16%), Positives = 133/373 (35%), Gaps = 30/373 (8%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148
P +DK +P L+RR+ GL + + + +
Sbjct: 37 PVAAEYDKTGEYP--VPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGV 94
Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208
+ + + + + K + ++ + +TE G
Sbjct: 95 QTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP-------------LMCAYCVTEPGAG 141
Query: 209 TDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVE---GRVGCFLVPRLLED 264
+D+A I ++ +K D Y ++G K ++++ ++ + +LA+ + + +
Sbjct: 142 SDVAGIKTKAEKKGDE-YIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVE 200
Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSA 321
G+ R + +G R + T + F + +L A
Sbjct: 201 ADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVA 260
Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381
+V + +L EA YA R G +L++ + +A++A+ + A R A D
Sbjct: 261 AGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVD 320
Query: 382 EAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANS 441
+ + A+ I K + +A + +A++ +GG+G+ E + + R++
Sbjct: 321 SGRRNTYYAS-------IAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQ 373
Query: 442 ILLGSGNAMVLDV 454
I G+ L V
Sbjct: 374 IYGGTSQIQRLIV 386
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 122 bits (308), Expect = 1e-28
Identities = 68/378 (17%), Positives = 140/378 (37%), Gaps = 38/378 (10%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPV-VRKQAHKIRAARLYLMAQLE 147
P + D+ ++ + G+ + + H + + +
Sbjct: 34 PKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAV 93
Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207
+ S + + + + PK+ S EY L ++E
Sbjct: 94 GLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA-------------LAMSEPNA 140
Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-------RVGCFLVP 259
G+D+ ++ + +K + Y L+G+K++++ P +D I+ A+ + + F+V
Sbjct: 141 GSDVVSMKLKAEKKGNH-YILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVE 199
Query: 260 RLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILI 316
+ G P G + +K+G R + T EL F + +LG N + L
Sbjct: 200 K----GMP-GFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLE 254
Query: 317 YLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRL 376
L A + M+ L I Y R G + +M+ +AD+ + A + +
Sbjct: 255 RLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNV 314
Query: 377 ANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRE 436
A + DE +++ A + + A V + ++C GG+GYI + + R R+
Sbjct: 315 AKACDEGHCTAKDCAGV-------ILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRD 367
Query: 437 SPANSILLGSGNAMVLDV 454
+ I G+ L +
Sbjct: 368 AKLYEIGAGTSEVRRLVI 385
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 121 bits (305), Expect = 4e-28
Identities = 77/371 (20%), Positives = 137/371 (36%), Gaps = 40/371 (10%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSF---EPVVRKQAHKIRAARLYLMAQ 145
P ++WD P + +R G ++ + A I + +
Sbjct: 26 PFADQWDNENHFP-YEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSS 84
Query: 146 LEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEK 205
L + A + + + K + PK+ S E+ +TE
Sbjct: 85 ALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFG-------------ITEP 131
Query: 206 RGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVGCFLV 258
G+D+ A++S + D + L+G K ++S + +D I A + G +
Sbjct: 132 DAGSDVMAMSSTAEDKGDH-WLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIE 190
Query: 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKIL 315
PR G+ L+ K+G+ ++ T EL N +LG V
Sbjct: 191 PRNFP-----GIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNH 244
Query: 316 IYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375
L +A V + L AI Y R G + D + + IA +A+++ AA L+++
Sbjct: 245 TRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYK 304
Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435
A + DE + + + KY + AM +G GY E +AR YR
Sbjct: 305 AAAAKDEGRLN------NGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYR 358
Query: 436 ESPANSILLGS 446
++P ++ GS
Sbjct: 359 DAPTYYMVEGS 369
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 120 bits (302), Expect = 8e-28
Identities = 52/257 (20%), Positives = 109/257 (42%), Gaps = 25/257 (9%)
Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVG 254
L+E+ G+D A++ ++ D + L+G K ++++ S + ++A + +
Sbjct: 137 ALSEREAGSDAASMRTRAVADGDD-WILNGSKCWITNGGKSTWYTVMAVTDPDKGANGIS 195
Query: 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVED 311
F+V + G + K+G + + T EL F N ++G+ TG
Sbjct: 196 AFMVHK----DDE-GFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPG--TGFKTA 248
Query: 312 MKILIY--LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAA 369
+ L + +V + +L AI Y + R G + D ++ +AD+A+ I AA
Sbjct: 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAA 308
Query: 370 TALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429
+ + A + + ++ +K + +A V +A++ GG GY ++
Sbjct: 309 RLMVYSAAARAERGEGD------LGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFP 362
Query: 430 IARHYRESPANSILLGS 446
+ R R++ I G+
Sbjct: 363 VERMMRDAKITQIYEGT 379
>2jif_A Short/branched chain specific acyl-COA dehydrogenase;
mitochondrion, oxidoreductase, transit peptide, fatty
acid metabolism, FAD, acetylation; HET: FAD COS; 2.0A
{Homo sapiens}
Length = 404
Score = 118 bits (297), Expect = 3e-27
Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 22/295 (7%)
Query: 165 MTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG 224
+ + E P T L+E G+D A+ ++ K D
Sbjct: 111 CEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDY 170
Query: 225 IYCLSGHKWFLSSPM-SDAFIMLAQVEGRVG-----CFLVPRLLEDGSPNGLCYQRLKNK 278
Y L+G K ++SS + F+++A V+ +G FLV R +P GL + +NK
Sbjct: 171 -YVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDR----DTP-GLHIGKPENK 224
Query: 279 IGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335
+G R+++T L F N +LG + + A + +
Sbjct: 225 LGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYT 284
Query: 336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARI 395
I Y + R G L D ++ +A +A + AA L++ A + K +EA+
Sbjct: 285 IPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEAS---- 340
Query: 396 MAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAM 450
+ KY+ ++A ++ +E +GG GY ++ + +++R++ +I G+ N
Sbjct: 341 ---MAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQ 392
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: FAD; 2.50A {Thermus thermophilus HB8}
Length = 372
Score = 118 bits (296), Expect = 4e-27
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 21/251 (8%)
Query: 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVGCFLVPR 260
LTE + G+D ++ ++ +++ G + L+G K +++ + + ++++A+ E + FLV +
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGG-FVLNGVKSWITSAGHAHLYVVMARTEKGISAFLVEK 181
Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY 317
G+P GL + R + K+G + T E+ F LLG+ G + L
Sbjct: 182 ----GTP-GLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEG--RGLAYALAGLDS 234
Query: 318 --LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375
+ A +V R + A YA R G L + + IAD+ + IAAA AL
Sbjct: 235 GRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLE 294
Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435
A D + + EA+ A K + A V EA++ +GG GY + + R+YR
Sbjct: 295 AARKKDRGERFTLEASAA-------KLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYR 347
Query: 436 ESPANSILLGS 446
++ I G+
Sbjct: 348 DAKVTEIYEGT 358
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 112 bits (281), Expect = 2e-25
Identities = 77/365 (21%), Positives = 132/365 (36%), Gaps = 35/365 (9%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148
P +R +K E +P + + GL + + ++
Sbjct: 37 PIVDRHEKDETYP--EGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASV 94
Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208
+S S+ + + T K W P + S E L+E + G
Sbjct: 95 AVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGE-------------QIGAYSLSEPQAG 141
Query: 209 TDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE---GRVGCFLVPRLLED 264
+D AA+ G Y ++G K W +D + + A+ V CFLVP
Sbjct: 142 SDAAALRCAATPTDGG-YVINGSKSWITHGGKADFYTLFARTGEGSRGVSCFLVPA---- 196
Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSA 321
P GL + + + K+G + T + N +G+ L A
Sbjct: 197 DQP-GLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIA 255
Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381
++ + +L EA+ YA R G +ID + +AD+A +A A A A D
Sbjct: 256 AVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRD 315
Query: 382 EAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANS 441
+ + S++A+ I K A V +A++ GG GY + + R+ RE+
Sbjct: 316 QGRPYSQQAS-------IAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQ 368
Query: 442 ILLGS 446
I G+
Sbjct: 369 IFEGT 373
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 111 bits (277), Expect = 6e-25
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 22/253 (8%)
Query: 203 TEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVG-----CF 256
+E G+D AA+ ++ + D Y L+G K ++S ++ ++ A V +
Sbjct: 125 SEPGNGSDAAALKTRAIRQGDH-YVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVAL 183
Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313
+V R G+P G ++ K+G R++ T EL F + LG+
Sbjct: 184 VVER----GTP-GFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTL 238
Query: 314 ILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALS 373
+ A SV R +L EA YA+ R G + + ++ + D+ + I A +
Sbjct: 239 NKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYT 298
Query: 374 FRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARH 433
+ A D+ + +A I K + ++A +A++ GG GY+ E + +
Sbjct: 299 YYAAWLADQGLPHAHASA-------IAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKL 351
Query: 434 YRESPANSILLGS 446
R+ N I G+
Sbjct: 352 LRDVKLNQIYEGT 364
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 111 bits (277), Expect = 7e-25
Identities = 66/366 (18%), Positives = 126/366 (34%), Gaps = 28/366 (7%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFE-PVVRKQAHKIRAARLYLMAQLE 147
P + E A A+ R GL + P + ++ + A + +
Sbjct: 40 PRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGY 97
Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207
+ S + + + + PK+ + E GLTE
Sbjct: 98 RSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGE-------------WIGCFGLTEPNH 144
Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSP 267
G+D ++ ++ +K+ G Y LSG K ++++ ++ G + + +
Sbjct: 145 GSDPGSMVTRARKVPGG-YSLSGSKMWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGC 203
Query: 268 NGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMS 324
GL + K+G R++ T E+ F +L + GP + Y A +
Sbjct: 204 KGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYG-IAWGA 262
Query: 325 VSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK 384
+ A Y R G L ++++ +AD+ +I RL DE
Sbjct: 263 LGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGT 322
Query: 385 SRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILL 444
+ E + I K C A + A + +GG+G +E +ARH +
Sbjct: 323 AAVEITS-------IMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYE 375
Query: 445 GSGNAM 450
G+ +
Sbjct: 376 GTHDIH 381
>2pg0_A Acyl-COA dehydrogenase; GK1316, structural genomics, PSI, protein
structure initiative; HET: FAD; 1.80A {Geobacillus
kaustophilus HTA426}
Length = 385
Score = 106 bits (266), Expect = 1e-23
Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 24/261 (9%)
Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-------R 252
+TE G+D+A I++ K D Y ++G K F++ +D ++ + +
Sbjct: 128 AMTEPGAGSDLANISTTAVKDGDY-YIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRG 186
Query: 253 VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309
+ +V R +P G R K+G + T EL F + LLG+ +
Sbjct: 187 ISLLVVER----DTP-GFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYL 241
Query: 310 EDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAA 369
+ L AI + + V + Y ++R G + + ++ +A++A +IA
Sbjct: 242 MEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALG 301
Query: 370 TALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429
R+ K E + + K+W +MA V AEAM+ GG GY+EE
Sbjct: 302 RTFVDRVIEEHMAGKQIVTEVS-------MAKWWITEMAKRVAAEAMQLHGGYGYMEEYE 354
Query: 430 IARHYRESPANSILLGSGNAM 450
IAR YR+ P ++I G+ M
Sbjct: 355 IARRYRDIPVSAIYAGTNEMM 375
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
structural genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus HB8}
Length = 385
Score = 106 bits (265), Expect = 1e-23
Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 16/254 (6%)
Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQ-VEGRVGCFLV 258
GLTE GG+D + + L+G K ++++ ++ ++ A+ G V FLV
Sbjct: 130 GLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGEVLGFLV 189
Query: 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY- 317
P +P G + +K K+ R++ T EL L + G + L
Sbjct: 190 PT----DTP-GFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCLTQA 244
Query: 318 -LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRL 376
A ++ + EA+ +A+ R G L + +++ +A++ L++RL
Sbjct: 245 RFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRL 304
Query: 377 ANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRE 436
A DE K + + A K A A + +GGSG E RH
Sbjct: 305 ARLKDEGKLTPAQVSLA-------KRQNVWKALQAARMARDILGGSGITLEYHAIRHMLN 357
Query: 437 SPANSILLGSGNAM 450
G+ +
Sbjct: 358 LETVYTYEGTHDVH 371
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 106 bits (265), Expect = 1e-23
Identities = 67/448 (14%), Positives = 117/448 (26%), Gaps = 73/448 (16%)
Query: 70 AQELARMANYNTPQLHAYGPGGERWDKVEF-HPAWHALLRRSIHDGLHCSIWDRS--FEP 126
+E A A +N + G + + +L + RS +E
Sbjct: 6 RKERAS-ATFNPELITHILDGSP--ENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEV 62
Query: 127 VVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL-------------MTTPRVHKD 173
V+K A ++ R Y ++ E SV L T +
Sbjct: 63 AVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQER 122
Query: 174 WAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISD------GIYC 227
+ ++ E T TE GT + + +
Sbjct: 123 FFMPAWNLEITGT-------------YAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT 169
Query: 228 LSGHKWFLSS--PMSDAFIMLAQVEGRVG-----CFLVPRLLEDG--SPNGLCYQRLKNK 278
++ KW+ S+ I+LAQ+ + F+VP G+ + K
Sbjct: 170 VTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPK 229
Query: 279 IGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIM--------------S 324
G L+ N L D + L + + +
Sbjct: 230 FGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNA 289
Query: 325 VSGMRVSLAEAIHYARRRHVSGGIL-------IDQPVMKRAIADIALDIAAATALSFRLA 377
+ + AI Y+ R S +D + + + A + +
Sbjct: 290 AQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMK 349
Query: 378 NSFDE-----AKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIAR 432
++ + E + K + A A I E GG GY I
Sbjct: 350 ETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPN 409
Query: 433 HYRESPANSILLGSGNAMVLDVLNLLEK 460
Y G M+L L K
Sbjct: 410 IYVTFTPACTFEGENTVMMLQTARFLMK 437
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 104 bits (259), Expect = 8e-23
Identities = 71/410 (17%), Positives = 142/410 (34%), Gaps = 45/410 (10%)
Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207
A + + + L K + P + + E LTE
Sbjct: 112 AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGE-------------KLAAYALTEPGS 158
Query: 208 GTDIAAITSQGQKISDG-IYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGS 266
G+D + + ++G Y L+G K ++++ ++ + +
Sbjct: 159 GSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDGEHFSAF---IVEKD 215
Query: 267 PNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY--LDSA 321
G+ + K+G + ++T L + LLG++ G + IL
Sbjct: 216 YAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIG--KGHIIAFNILNIGRYKLG 273
Query: 322 IMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFD 381
+ +V + ++ + YA +R + P+++ +A++A AA + +R F+
Sbjct: 274 VGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFE 333
Query: 382 EAKSRSEEA------------AYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS 429
S E A I + K + ++ + E ++ GG G++ E
Sbjct: 334 SRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYE 393
Query: 430 IARHYRESPANSILLGSGNAMVLDV-LNLLEKG----TNLFEQLFSTLEQDLGSSGKKV- 483
I R YR+S N I G+ L V L K L ++ E+ + ++V
Sbjct: 394 IERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMKGELPLLQKAQKLQEELMMMMPEEVG 453
Query: 484 ITILRDSISLCKEDKGLARFLTEKIALASSAAALYRAG--MNDIADVFLE 531
L L K + + +A AL + + +IAD+
Sbjct: 454 DEPLALQKYLVNNAKKIGL-MVAGLAAQKYGKALDKEQEILVNIADIVSN 502
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase (flavoprotein);
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 102 bits (255), Expect = 2e-22
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 21/250 (8%)
Query: 210 DIAAITSQGQKISDGIYCLSG-HKWFLSSPMSDAFIMLAQVEGRVG-----CFLVPRLLE 263
D + + K DG Y L+G + + +D +I+ A + G F++
Sbjct: 136 DASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILED--- 192
Query: 264 DGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDS 320
G+P G Y + ++K+G ++ T+EL F + +LG+ +
Sbjct: 193 -GTP-GFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGV 250
Query: 321 AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSF 380
A ++ +LA+A+ Y+++R G L + +AD+ + I AA L ++ A
Sbjct: 251 AAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKK 310
Query: 381 DEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPAN 440
E K + +AA I K +A V EA++ GG GY EE +ARH R++
Sbjct: 311 QEGKPFTVDAA-------IAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKIT 363
Query: 441 SILLGSGNAM 450
I G+
Sbjct: 364 QIYEGTNEVQ 373
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 99 bits (248), Expect = 1e-21
Identities = 68/366 (18%), Positives = 132/366 (36%), Gaps = 27/366 (7%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEA 148
P WD+ E P ++R++ G +
Sbjct: 40 PNMAEWDQKELFP--VDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTST 97
Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208
+S A M+ + P + + E + LTE G
Sbjct: 98 TAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASY-------------CLTEPGSG 144
Query: 209 TDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEGRVGCFLVPRLLEDGSP 267
+D A++ + +K D Y L+G K F+S SD ++++ + G + ++E G+P
Sbjct: 145 SDAASLLTSAKKQGDH-YILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTP 203
Query: 268 NGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMS 324
GL + + + K+G S T + F + +G ++ A S
Sbjct: 204 -GLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCS 262
Query: 325 VSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK 384
+ S+ + R G L ++ +AD+A + AA + A + E +
Sbjct: 263 LGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEER 322
Query: 385 SRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILL 444
A + + K + A+ +A++ GG GY+++ ++ ++ R+S + IL
Sbjct: 323 KD------AVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILE 376
Query: 445 GSGNAM 450
GS M
Sbjct: 377 GSNEVM 382
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 99.8 bits (248), Expect = 1e-21
Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 42/342 (12%)
Query: 159 ASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQG 218
+ H ++ S E S L +E G + + G
Sbjct: 102 GLTPINLAAGPQHAEFLAPFLSGEG-----------SPLASLVFSEPGGVANALEKGAPG 150
Query: 219 QK----ISDGIYCLSGHKWFLSS-PMSDAFIMLAQV-----------------EGRVGCF 256
+ + + ++G K + ++ D +
Sbjct: 151 FQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIIL 210
Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313
+ L+ R G+ S + + ++N +L
Sbjct: 211 VTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAF 270
Query: 314 ILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGI-LIDQPVMKRAIADIALDIAAATAL 372
+ M V MR + A+ +A+ + G + L+++ ++ + + AA AL
Sbjct: 271 DGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARAL 330
Query: 373 SFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIAR 432
+++ A++ + + R +A K +C + A + + +G S Y +R +
Sbjct: 331 TWKAAHAMENGPGDYDAR---RELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSD 387
Query: 433 HYRESPANSILLGSGNAMVLDVL--NLLEKGTNLFEQLFSTL 472
+ I G + L +L+ + + + +
Sbjct: 388 LLNTAVVLPIFDGGNVGIRRRHLQQLMLKPTYDAWSSTYGSF 429
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: FAD; 1.65A {Thermus thermophilus HB8} SCOP:
a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 99.1 bits (246), Expect = 2e-21
Identities = 71/371 (19%), Positives = 145/371 (39%), Gaps = 40/371 (10%)
Query: 89 PGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPV-VRKQAHKIRAARLYLMAQLE 147
PG D+ P L+R+ G+ ++ ++ + + +
Sbjct: 28 PGAAERDRTGAFP--WDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGAL 85
Query: 148 AGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207
A + S + + + L + + + PK+ S E GLTE
Sbjct: 86 ALTVASHNSLATGHILLAGSEAQKEAFLPKLASGE-------------ALGAWGLTEPGS 132
Query: 208 GTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGR---------VGCFLV 258
G+D AA+ ++ +K+ G ++ ++ ++++A+ + + F
Sbjct: 133 GSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAF 192
Query: 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKIL 315
R GL R + K+G ++ T +L + F LLG+ V +
Sbjct: 193 FR-----PERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDG 247
Query: 316 IYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375
+ A M+V + +L A+ YA+ R G + + + +A+ A ++ AA L +
Sbjct: 248 GRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLK 307
Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYR 435
A D + + EAA A K + + A EA++ +GG GY+++ + R++R
Sbjct: 308 AAELKDAGRPFTLEAAQA-------KLFASEAAVKACDEAIQILGGYGYVKDYPVERYWR 360
Query: 436 ESPANSILLGS 446
++ I G+
Sbjct: 361 DARLTRIGEGT 371
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 98.3 bits (244), Expect = 4e-21
Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 11/316 (3%)
Query: 146 LEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEK 205
L A S A + L + +W A+
Sbjct: 88 LLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVV-----C 142
Query: 206 RGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVGCFLVPRLLED 264
G D + + G + LSG K +S +P+ F++ A+ +G G + +
Sbjct: 143 SGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVT 202
Query: 265 GSPNGLCYQRLKNKIGNRSNATVELEFSNTFGF---LLGDLNVSTGPVEDMKILIYLDSA 321
G + +G R++ TV++ F + +L V + +
Sbjct: 203 RDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVS 262
Query: 322 I--MSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANS 379
+ + V + + A+ RR V + AL A +AL+ A S
Sbjct: 263 VLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALS 322
Query: 380 FDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPA 439
D + E K ++AP ++++ + +GG+ Y +AR R+ A
Sbjct: 323 ADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQA 382
Query: 440 NSILLGSGNAMVLDVL 455
+ +D L
Sbjct: 383 GRFMQPYAYVDAVDFL 398
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 93.3 bits (231), Expect = 1e-19
Identities = 72/334 (21%), Positives = 126/334 (37%), Gaps = 19/334 (5%)
Query: 141 YLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGL 200
Y +A E + + S+ + + K + + P
Sbjct: 70 YAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEP 129
Query: 201 GLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPR 260
G G A + +G + W S+ + A A + FLVP
Sbjct: 130 GNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPM 189
Query: 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIY 317
+P GL + ++K+G R ++T L F + +LG+ + +
Sbjct: 190 ----PTP-GLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGR 244
Query: 318 LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLA 377
+ A ++ + +L A++YA R G L V++ +AD+AL + +A L++R A
Sbjct: 245 IGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAA 304
Query: 378 NSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRES 437
D K +EAA A K + A A+ +A++ +GG GY+ E RHYR++
Sbjct: 305 MLKDNKKPFIKEAAMA-------KLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDA 357
Query: 438 PANSILLGSGNAMVLD----VLNLLEKGTNLFEQ 467
I G+ L +L NL+ Q
Sbjct: 358 RITEIYEGTSEIQRLVIAGHLLRSYRSAENLYFQ 391
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 90.4 bits (223), Expect = 9e-19
Identities = 48/302 (15%), Positives = 98/302 (32%), Gaps = 20/302 (6%)
Query: 149 GHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGG 208
+M+ +A V + + ++ S + +E++ G
Sbjct: 72 RSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVG--------------FSERQAG 117
Query: 209 TDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPN 268
+D++A+ ++ + D W ++ +D ++ E G +V G
Sbjct: 118 SDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAVVVVPADTPGVRV 177
Query: 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328
+ + ++ ++ L G V A V +
Sbjct: 178 ERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGIL 237
Query: 329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE 388
R A+ +AR R G L D ++ IAD+ A + ++ +DE
Sbjct: 238 RACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMV 297
Query: 389 EAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGN 448
A + K+ + A A A A + + +G E + R YR++ I+ GS
Sbjct: 298 PAT------ILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSE 351
Query: 449 AM 450
Sbjct: 352 MC 353
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 88.3 bits (218), Expect = 5e-18
Identities = 53/436 (12%), Positives = 104/436 (23%), Gaps = 62/436 (14%)
Query: 159 ASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQG 218
+ T K W + TE G+++ + +
Sbjct: 107 VPAIKGQGTEEQQKKWLSLANKMQIIGC-------------YAQTELGHGSNVQGLETTA 153
Query: 219 QKISDG------IYCLSGHKWFLSS--PMSDAFIMLAQV-----EGRVGCFLVPRLLEDG 265
+ KW+ +S ++ A++ + + F+V +
Sbjct: 154 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 213
Query: 266 --SPNGLCYQRLKNKI---GNRSNATVELEFSNTF---GFLLGDLN------------VS 305
+ + K+ S L F + +L L+ V
Sbjct: 214 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVP 273
Query: 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSG-------GILIDQPVMKRA 358
V + + + + + ++ A Y+ R G +ID +
Sbjct: 274 KQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNR 333
Query: 359 IADIALDIAAATALSFRLANSFDEAKSRSEEA-----AYARIMAPITKYWCCKMAPAVIA 413
+ + A + L + + R + A K I
Sbjct: 334 LFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIE 393
Query: 414 EAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLE 473
E + GG GY+ + + G + L V L K +
Sbjct: 394 ECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVG 453
Query: 474 QDLGSSGKKVITILRDSI----SLCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVF 529
+ R + D L F + +A + A N
Sbjct: 454 TTAYMGRAAHLLQCRSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQ 513
Query: 530 LENRFLDNCHSTHCML 545
L HC L
Sbjct: 514 ELLADLVEAAIAHCQL 529
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 87.7 bits (216), Expect = 7e-18
Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 16/233 (6%)
Query: 226 YCLSGHKW-FLSSPMSDAFIMLAQVE-GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283
Y L+G K +SPM+D F++ A+ E G + FL+ + + GL R++ K R+
Sbjct: 158 YTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMR-----GLSAPRIQGKFSLRA 212
Query: 284 NATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY--LDSAIMSVSGMRVSLAEAIHYARR 341
+AT + L ++ L A + L A YA
Sbjct: 213 SATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALD 272
Query: 342 RHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITK 401
R G L ++++ +AD+ +I +L D+ K+ E + K
Sbjct: 273 RMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLL-------K 325
Query: 402 YWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDV 454
C A + +A + +GG+G +E + RH A + G+ + L +
Sbjct: 326 RNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALIL 378
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 84.9 bits (209), Expect = 4e-17
Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 17/233 (7%)
Query: 226 YCLSGHKWFLSS-PMSDAFIMLAQVEGR-VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283
Y L+G K ++S+ + F + A+V+G FLV R +P GL + + K+G ++
Sbjct: 173 YILNGVKQWISNAGFAHLFTVFAKVDGEHFTAFLVER----DTP-GLSFGPEEKKMGIKA 227
Query: 284 NATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYAR 340
++T ++ + +LG++ ++ + +V G + +L + YA
Sbjct: 228 SSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYAT 287
Query: 341 RRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA-------KSRSEEAAYA 393
+R G + ++++ + ++A I AA + +R DEA ++
Sbjct: 288 QRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEY 347
Query: 394 RIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGS 446
+ A I K ++ V+ E ++ GG GY +E I R YR++ N I G+
Sbjct: 348 AVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGT 400
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; alternative
splicing, fatty acid metabolism, transit peptide,
disease mutation, lipid metabolism; HET: FAD TH3; 1.45A
{Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 83.0 bits (204), Expect = 1e-16
Identities = 52/299 (17%), Positives = 113/299 (37%), Gaps = 15/299 (5%)
Query: 226 YCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNA 285
+ + + V+ ++ F+V R G+ + + K+G +++
Sbjct: 204 NGGLADIFTVFAKTPVTDPATGAVKEKITAFVVER-----GFGGITHGPPEKKMGIKASN 258
Query: 286 TVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRR 342
T E+ F +LG++ + A MR +A+A+ +A R
Sbjct: 259 TAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNR 318
Query: 343 HVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKY 402
G + + +++ +A + + ++++ ++ + D+ A +I A I+K
Sbjct: 319 TQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQ------GATDFQIEAAISKI 372
Query: 403 WCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDV-LNLLEKG 461
+ + A V E ++ +GG G+++E + R R+ I G+ + + L V L
Sbjct: 373 FGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 432
Query: 462 TNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLARFLTEKIALASSAAALYRA 520
L S L+ G++G + + GL+ L+ S RA
Sbjct: 433 GKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSGELAVRA 491
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabolism, lipid
metabolism; HET: CAA FAD; 2.7A {Arabidopsis thaliana}
PDB: 2ix6_A*
Length = 436
Score = 80.1 bits (196), Expect = 1e-15
Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 9/189 (4%)
Query: 268 NGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKI--LIYLDSAIMSV 325
GL ++ NKIG R ++ N F L + K+ + + A +
Sbjct: 237 PGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPI 296
Query: 326 SGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS 385
Y + R G L + ++ + + ++ A + +RL ++ +
Sbjct: 297 GISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQM 356
Query: 386 RSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLG 445
+A+ + K W A + E +GG+G + + +A+ + + G
Sbjct: 357 TPGQAS-------LGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
Query: 446 SGNAMVLDV 454
+ + L
Sbjct: 410 TYDINTLVT 418
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structural genomics,
PSI-2, protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.10A {Rhodococcus SP}
Length = 414
Score = 71.3 bits (173), Expect = 5e-13
Identities = 36/256 (14%), Positives = 67/256 (26%), Gaps = 20/256 (7%)
Query: 200 LGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE--GRVGCF 256
+ + DG Y L G F S + + A V
Sbjct: 120 IWGEDNDTWMASPYAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIAT 179
Query: 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMK 313
+ + + + IG R + +L F L V G +
Sbjct: 180 PSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEA 239
Query: 314 ILIYLDSAIMSVSGMRVSLAEAIHYARRRHV-------------SGGILIDQPVMKRAIA 360
+ + + A+ + +G + + P + AI
Sbjct: 240 GRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIG 299
Query: 361 DIALDIAAATALSFRLANSFDEAKSRSEEA-AYARIMAPITKYWCCKMAPAVIAEAMECI 419
+ A +I A+ A+ F + +E R + T+ A E
Sbjct: 300 ESAAEINASRVSLIETADRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARA 359
Query: 420 GGSGYIEERSIARHYR 435
GG + + R +R
Sbjct: 360 GGGALHYKTPMQRFWR 375
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 70.8 bits (173), Expect = 7e-13
Identities = 39/350 (11%), Positives = 84/350 (24%), Gaps = 30/350 (8%)
Query: 99 FHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLM-SPSVT 157
P +L DG+ S + P R ++ ++ AG P
Sbjct: 48 HRPDLQDVLTFVDADGVRRSRQWQD--PKDAAGLRVKRKYHETILREIAAGSYGRLPDAH 105
Query: 158 SASMVALMTTPRVHKDWAPKIFSREYDPTNKA---PMQKTSVAIGLGLTEKRGGTDIAAI 214
+ + P V + + R +++ + L + + A
Sbjct: 106 NYTFTTYADDPEVWEKQSIGAEGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAA 165
Query: 215 TSQGQ-----KISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEGRVG-----CFLVPR--- 260
++ + +D ++G K + D + + +P
Sbjct: 166 QARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTP 225
Query: 261 --LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILI-- 316
+ F N F + V + L
Sbjct: 226 GVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVF---IPWEQVFHIGNPEHAKLYPQ 282
Query: 317 -YLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFR 375
D + +V AE I P + +A + A A
Sbjct: 283 RIFDWVHYHILIRQVLRAELIVGLAILITEHIGTSKLPTVSARVAKLVAFHLAMQAHLIA 342
Query: 376 LANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
+ K ++ + + +V+ E ++ G S +
Sbjct: 343 SEETGFHTKG--GRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLM 390
>2wbi_A Acyl-COA dehydrogenase family member 11; human, polymorphism,
phosphoprotein, oxidoreductase, alternative splicing;
HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 69.7 bits (169), Expect = 2e-12
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 19/237 (8%)
Query: 223 DGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPR-------LLEDGSPNGLCYQRL 275
D + K + SS + +A V GR + R L+ +P + L
Sbjct: 174 DEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPL 233
Query: 276 KNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY------LDSAIMSVSGMR 329
+ G N + + N+ G +I + + +V
Sbjct: 234 -SVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAE 292
Query: 330 VSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEE 389
+L A +R L V+ IA+ + I L+ + A+S D
Sbjct: 293 RALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG----- 347
Query: 390 AAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGS 446
+A A+ + K + ++ A++ GG+G ++ +A Y + + G
Sbjct: 348 SAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGP 404
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.0 bits (166), Expect = 6e-12
Identities = 102/642 (15%), Positives = 175/642 (27%), Gaps = 264/642 (41%)
Query: 18 PSDSLFALNQPPL---FIGMNAYSSDSLLVALIANFPSVVHKELELLGEYVLSCTAQELA 74
P+ S F +Q L F + A + EL+G++ L + +
Sbjct: 23 PTASFFIASQ--LQEQFN--KILPEPTEGFAADDEPTTPA----ELVGKF-LGYVSSLVE 73
Query: 75 RMANYNTPQ-----LHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVR 129
Q L + E + L IH + + + +
Sbjct: 74 PSKVGQFDQVLNLCLTEF----EN----CY------LEGNDIHALAAKLLQEN--DTTLV 117
Query: 130 KQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFSREYDPTNKA 189
K I+ Y+ A + S AL R + A
Sbjct: 118 KTKELIKN---YI----TARIMAKRPFDKKSNSALF---RAVGE-------------GNA 154
Query: 190 PMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQV 249
+ VAI GG QG + +F + L Q
Sbjct: 155 QL----VAI-------FGG--------QG----------NTDDYF------EELRDLYQT 179
Query: 250 EGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDL-----NV 304
+ L++ + L R+ E F+ G ++ N
Sbjct: 180 ---YHVLVGD-LIKFSAE---TLSEL-----IRTTLDAEKVFTQ--GL---NILEWLENP 222
Query: 305 STGPVEDMKILIYLDSAIMSVS----GMRVSLAEAIHYA---R---------RRHVSG-- 346
S P +D YL S +S G+ + LA HY + R ++ G
Sbjct: 223 SNTPDKD-----YLLSI--PISCPLIGV-IQLA---HYVVTAKLLGFTPGELRSYLKGAT 271
Query: 347 ----GILIDQPVMKRAIADIALDIAAATALSFRLANSFDE-AKS----------RSEEAA 391
G++ A+A IA S+ SF + R EA
Sbjct: 272 GHSQGLVT-------AVA-----IAETD--SWE---SFFVSVRKAITVLFFIGVRCYEAY 314
Query: 392 YARIMAPITKYWCCKMAPAVIAEAMECIGGSG------------------YI-------- 425
P T + P+++ +++E G Y+
Sbjct: 315 ------PNTS-----LPPSILEDSLE--NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 426 EER--SIARHYRESPANSILLGSGNAMVLDVLNL-LEKGTNLFEQLFSTLEQD-LGSSGK 481
+ I+ N ++ SG L LNL L K S L+Q + S +
Sbjct: 362 AGKQVEISLV--NGAKNLVV--SGPPQSLYGLNLTLRKAKAP-----SGLDQSRIPFSER 412
Query: 482 KV--------ITI------LRDSISLCKEDKGLARFLTEKIALASS--AAALY------- 518
K+ + L + L +D L + ++ + +Y
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKD--LVK---NNVSFNAKDIQIPVYDTFDGSD 467
Query: 519 -RAGMNDIADVFLENRFLDNCH---STHCMLHGRFNAAHIID 556
R I++ ++ +T F A HI+D
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQ------FKATHILD 503
Score = 56.1 bits (135), Expect = 2e-08
Identities = 101/663 (15%), Positives = 192/663 (28%), Gaps = 313/663 (47%)
Query: 2 TLREIYRRLAMNQVHQPSDSLFALNQPPL--------FIG-------------------- 33
L+E + + + +P++ FA + P F+G
Sbjct: 32 QLQEQFNK----ILPEPTEG-FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 34 -MNAYSSD--------SLLVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQL 84
+ + + +L L+ + + K EL+ Y+ + MA
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR------IMAKRPFD-- 138
Query: 85 HAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIW---------DRSFEPVVRKQAHKI 135
+ AL R++ +G + + D FE ++
Sbjct: 139 -------------KKSN--SALF-RAVGEG-NAQLVAIFGGQGNTDDYFE--------EL 173
Query: 136 RAARLYLMAQLEAGHLMSPSVTSASMV--ALMTTPRVHKDWAPKIFSREYD--------- 184
R LY L+ + ++ L+ T A K+F++ +
Sbjct: 174 R--DLYQTYH----VLVGDLIKFSAETLSELIRTT----LDAEKVFTQGLNILEWLENPS 223
Query: 185 --PTN----KAPMQKTSVA-IG-------------LGLT--EKRGGTDIAAIT--SQGQK 220
P P+ S IG LG T E R + + T SQG
Sbjct: 224 NTPDKDYLLSIPI---SCPLIGVIQLAHYVVTAKLLGFTPGELR--SYLKGATGHSQG-- 276
Query: 221 I--------SDGIYCLSGHKWFLSSPMSDAFIMLAQ--VEG--RVGC---------FLVP 259
+ +D S W ++F + + + +G L P
Sbjct: 277 LVTAVAIAETD-----S---W-------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 260 RLLED------GSP------NGLCYQRLKNKIG--NR---SNATVELEFSNTFGFLLGDL 302
+LED G P + L +++++ + N + VE+ N G
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAK 375
Query: 303 N-VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQ---PVMKRA 358
N V +GP + S+ G+ ++L R+ G +DQ P +R
Sbjct: 376 NLVVSGPPQ-------------SLYGLNLTL-------RKAKAPSG--LDQSRIPFSER- 412
Query: 359 IADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPI-TKYWCCKMAPAVIAEAME 417
L F N F + +P + + PA ++
Sbjct: 413 ------------KLKFS--NRF------------LPVASPFHSHL----LVPA--SDL-- 438
Query: 418 CIGGSGYIEERSIARHYRESPANSILL-------GSGNAMVLDVLNLLEKGTNLFEQLFS 470
I + + ++ A I + GS +L ++ E++
Sbjct: 439 -------INKD-LVKNNVSFNAKDIQIPVYDTFDGS---------DLRVLSGSISERIVD 481
Query: 471 --TLEQ---------------DLG---SSGKKVITILRDSISLCKEDKGLARFLTEKIAL 510
D G +SG V+T R+ K+ G+ ++ +
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT-HRN-----KDGTGV------RVIV 529
Query: 511 ASS 513
A +
Sbjct: 530 AGT 532
Score = 27.6 bits (61), Expect = 8.7
Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 90/276 (32%)
Query: 279 IGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHY 338
+ NR++ F +T+GF + D+ V PV + I+ G R+
Sbjct: 1645 VWNRADN----HFKDTYGFSILDI-VINNPV---NLTIHFGGE----KGKRI-------- 1684
Query: 339 ARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS-RSEEAAYARIMA 397
R + S I I D L T F+ N + + RSE+ +
Sbjct: 1685 --RENYSAMIF-------ETIVDGKLK----TEKIFKEINEHSTSYTFRSEKG-----LL 1726
Query: 398 PITKYWCCKMAPAV-IAE--AMECIGGSGYIEERSIARHYRESPANSILLG------SGN 448
T++ PA+ + E A E + G I PA++ G +
Sbjct: 1727 SATQF----TQPALTLMEKAAFEDLKSKGLI------------PADATFAGHSLGEYAAL 1770
Query: 449 AMVLDVLNLLEKGTNLFEQLF---STLE-----QDLGSSGKKVITIL--RDSISLCKEDK 498
A + DV+++ +L E +F T++ +LG S +I I R + S +E
Sbjct: 1771 ASLADVMSI----ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-- 1824
Query: 499 GLARFLTEKIALASSAAALYRAG-MNDIADVFLENR 533
+++ E++ R G + +I + +EN+
Sbjct: 1825 -ALQYVVERVG--------KRTGWLVEIVNYNVENQ 1851
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics, PSI-2, protein structure initiative; HET: 1PS;
1.65A {Rhodococcus SP}
Length = 394
Score = 67.8 bits (164), Expect = 6e-12
Identities = 39/255 (15%), Positives = 75/255 (29%), Gaps = 20/255 (7%)
Query: 207 GGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGS 266
+ ++ DG Y ++G + S ++ +L + V +
Sbjct: 114 VRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKD-GRPVDFVSFLIP 172
Query: 267 PNGLCYQRLKNKIGNRSNATVELEFSNT-------------FGFLLGDLNVSTGPVEDMK 313
+ N +G R + + + L +T PV M
Sbjct: 173 REDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMP 232
Query: 314 ILIYLDSAI--MSVSGMRVSLAEAIHYARRR---HVSGGILIDQPVMKRAIADIALDIAA 368
+ I V + + + +R +G D P K IA+ + DI A
Sbjct: 233 WGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDA 292
Query: 369 ATALSFRLANSFDEAKSRSEEAAY-ARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEE 427
A EE + R+ A + A + I + E G +
Sbjct: 293 AWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANG 352
Query: 428 RSIARHYRESPANSI 442
+ R +R++ A +
Sbjct: 353 TPLQRFWRDAHAGRV 367
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase component;
flavoenzyme hydroxylase, oxidoreductase; 2.3A
{Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 64.3 bits (155), Expect = 6e-11
Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 3/190 (1%)
Query: 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328
G +L N + + G S + + +S+
Sbjct: 219 GSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIA 278
Query: 329 RVSLAEAIHYARRRHVS--GGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR 386
+ R R + G + IA+ +AAA AL +
Sbjct: 279 ERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLN 338
Query: 387 SEEA-AYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLG 445
+ + + KM + M G + +++ + R +R++
Sbjct: 339 HQYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAY 398
Query: 446 SGNAMVLDVL 455
+ + +L
Sbjct: 399 TDYDVCAQIL 408
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A*
Length = 439
Score = 61.8 bits (148), Expect = 4e-10
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 371 ALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSI 430
L ++ + ++ + MA TK + +A + +AM+ +G Y ++ S
Sbjct: 332 LLVWKAVTTLEDEALEWKVKLE---MAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSF 388
Query: 431 ARHYRESPANSILLGSGNAMVLDVL 455
R E + G + +
Sbjct: 389 PRLLNEVMCYPLFDGGNIGLRRRQM 413
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus HB8} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 52.3 bits (125), Expect = 2e-07
Identities = 63/396 (15%), Positives = 114/396 (28%), Gaps = 76/396 (19%)
Query: 84 LHAYGP----GGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVR---------- 129
L P GE+ + HP R + +++D +P R
Sbjct: 12 LKTRPPNLWYKGEKVEDPTTHPV----FRGIVR--TMAALYDLQHDPRYREVLTYEEEGK 65
Query: 130 -----------KQAHKIRAARLYLMAQLEAGHL-MSPSVTSASMVALMTTPRVHKDWAPK 177
K+ K R L A G + SP +A ++A + ++A
Sbjct: 66 RHGMSFLIPKTKEDLKRRGQAYKLWADQNLGMMGRSPDYLNAVVMAYAASADYFGEFAEN 125
Query: 178 IFSREYDPTNKAPMQKTSVAIGLGLTEKRG-------GTDIAAITSQGQKISDGIYCLSG 230
+ R Y ++ +A LT + G I K ++ + G
Sbjct: 126 V--RNYYR----YLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRG 179
Query: 231 HKWFLSSPMSDAFIMLAQV------EGRVGCFLVPRLLEDGSPNGLCYQRLK-------- 276
+ + P++D ++ + E F +P +P R
Sbjct: 180 ARMTATFPLADEVLIFPSILLQAGSEKYALAFALPT----STPGLHFVCREALVGGDSPF 235
Query: 277 --NKIGNRSNATVELEFSNTF-----GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMR 329
+ F + F+LG++ + L + V ++
Sbjct: 236 DHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNH---MAHQVVALK 292
Query: 330 VSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEE 389
+ EA G ++ IA+I + + A A R E
Sbjct: 293 TAKTEAFLGVAALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENA--YGL 350
Query: 390 AAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425
R + ++ P I E +E IG SG I
Sbjct: 351 LVPDRGALDGARNLYPRLYP-RIREILEQIGASGLI 385
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.6 bits (78), Expect = 0.066
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 388 EEAAYARIMAPITKYWCCKMAPAV-IAEAME 417
E+ A ++ A + K + APA+ I ME
Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.56
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 130 KQAHKIRAARLYLMAQLEAGHLMSPSVT-SASM 161
KQA K A L L A A P++ A+M
Sbjct: 19 KQALKKLQASLKLYADDSA-----PALAIKATM 46
Score = 30.0 bits (66), Expect = 1.5
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 24/51 (47%)
Query: 473 EQDLGSSGKKVITILRDSISLCKEDKGLARFLTEKIALASSAAAL-YRAGM 522
+Q L KK L+ S+ L +D SA AL +A M
Sbjct: 19 KQAL----KK----LQASLKLYADD---------------SAPALAIKATM 46
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 30.5 bits (68), Expect = 0.95
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 91 GERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAAR 139
+ +F AW LL+ HD + D ++ + +
Sbjct: 332 TGDYPHDQFDYAWKTLLQNHPHDSICGCSVDEVHRGMMTRFENANDVGH 380
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 28.2 bits (62), Expect = 4.8
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 91 GERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAAR 139
+ + AW L++ HD + D ++ +
Sbjct: 352 TSTYPHDQLRYAWKTLMQNHPHDSICGCSVDSVHREMMTRFEKAYEVGH 400
>2f9q_A CYPIID6, cytochrome P450 2D6, P450-DB1; HAEM, oxidoreductase; HET:
HEM; 3.00A {Homo sapiens}
Length = 479
Score = 27.4 bits (59), Expect = 8.6
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 1/133 (0%)
Query: 47 IANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHAL 106
+A P VV L + E L ++ A Q+ +GP + + PAW
Sbjct: 51 LAWTPVVVLNGLAAVRE-ALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQ 109
Query: 107 LRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMT 166
R S+ + + +S E V ++A + AA + + + S + +L
Sbjct: 110 RRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTC 169
Query: 167 TPRVHKDWAPKIF 179
R D +
Sbjct: 170 GRRFEYDDPRFLR 182
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.135 0.399
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,802,662
Number of extensions: 223160
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 44
Length of query: 562
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 465
Effective length of database: 3,341,562
Effective search space: 1553826330
Effective search space used: 1553826330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)