HHsearch alignment for GI: 254780300 and conserved domain: COG0540
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism].
Probab=100.00 E-value=0 Score=609.32 Aligned_cols=305 Identities=44% Similarity=0.647 Sum_probs=276.4
Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 97777741782238999999999999999964420487752128976999960787337899997987613521112333
Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316)
T Consensus 3 ~~~~~rhlisi~dls~~ei~~ll~~A~~~~~~-~~~~~~~~~l~gk~v~~lFFEpSTRTr~SFE~A~krLG~~Vv~~~~~ 81 (316)
T COG0540 3 NPFKMRHLISIEDLSREELELLLDTADEFKAV-ARAEKKLDLLKGKVVANLFFEPSTRTRLSFETAMKRLGADVVNFSDS 81 (316)
T ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH-HHCCCCCCHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 86666625016758999999999999999866-50247750212767999984587730664999999729938964587
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316)
T Consensus 82 ~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~i 161 (316)
T COG0540 82 ESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKI 161 (316)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 66544661099999999860799899947641489999873588854788889998952899999999998487679479
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCCCCC-CCCCCC-HHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 103554433013344664201342055327753222-----1121234-330058-456036862210001133123334
Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLP-----KDISNMG-VEVFHD-MQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~-----~~~~~~~-~~~~~d-~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
T Consensus 162 aivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~~~ 241 (316)
T COG0540 162 AIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFNDP 241 (316)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEHHHHHHCCCC
T ss_conf 99825441188887799999819879998865867946578887624852798146666423377898522347544786
Q ss_pred HHHH-HHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4445-55420235758899983799859955899876874476797699701686877569999999999977814
Q gi|254780300|r 235 LIPS-IREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQN 309 (316)
Q Consensus 235 ~~~~-~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316)
T Consensus 242 ~~~s~~~~y~~~~~~~~~~~--~k~~~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~~~~ 315 (316)
T COG0540 242 EEYSKVKEYYKLYGLTLERL--AKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGGRE 315 (316)
T ss_pred CCHHHHHHHHHHHHHHHHHH--CCCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 32588888999978899962--689968978887567875766564461778999996279999999999853336