HHsearch alignment for GI: 254780300 and conserved domain: PRK02255
>PRK02255 putrescine carbamoyltransferase; Provisional.
Probab=100.00 E-value=0 Score=651.65 Aligned_cols=301 Identities=24% Similarity=0.272 Sum_probs=273.1
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77774178223899999999999999996442048775212897699996078733789999798761352111233332
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNS 83 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s 83 (316)
T Consensus 2 ~k~kh~L~~~Dls~~ei~~ll~~A~~~K~~~~~~~-~~~~L~gk~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~~ 80 (341)
T PRK02255 2 NKKRDFIDTQDYSKEEILYMIDLGLKLKEAIKNGA-YPQLLKNKSLGMIFEQPSTRTRVSFETAMTQLGGHAQYLAPGQI 80 (341)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 98756472221999999999999999987775588-87557999899996789710799999999985997998276544
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCCCCCC
Q ss_conf 1013334224799987413671465203210055420012342111123456631223322222220122---2100010
Q gi|254780300|r 84 AMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK---GKISNLH 160 (316)
Q Consensus 84 ~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~---g~l~~l~ 160 (316)
T Consensus 81 sl~kgEsl~DT~~vls~~-~D~iviR~~~~~~~~~la~~~~vP-VIN-g~~~~~HPtQaL~Dl~Ti~e~~~~~~~l~glk 157 (341)
T PRK02255 81 HLGGHESIEDTARVLSRM-VDIIMARVLRHQTVVELAKYATVP-VIN-GMSDYNHPTQELGDVFTMLEHLPAGKKLEDCK 157 (341)
T ss_pred CCCCCCCHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHHCCCC-EEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 578876699999999863-788999934846799999867999-897-89988772789998999999860179845656
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 010355443301334466420134205532775322211-----------212343300584560368622100011331
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
T Consensus 158 va~vGD--~~nv~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~w~~~ 235 (341)
T PRK02255 158 VVFVGD--ATQVCSSLMFITTKMGMDFVHFGPKGFQLPEEHLAIARENCEVSGGSVLVTDDADEAVKDADFIYTDVWYGL 235 (341)
T ss_pred EEEECC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEHHHHHH
T ss_conf 887268--534488999999975998999879746899999999999999739979999788887257987851078886
Q ss_pred HHHHHH-HHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 233344-4455542023575889998379985995589987687447679769970168687756999999999997781
Q gi|254780300|r 230 RIPRSL-IPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQ 308 (316)
Q Consensus 230 ~~~~~~-~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~ 308 (316)
T Consensus 236 ~~~~~~~~~~~~~~~~~y~v~~~~m~~a~~~ai~MHplPa~Rg~EIs~eV~d~p~S~i~~QaeNgl~vrmAlL~~lL~~~ 315 (341)
T PRK02255 236 YEQELSEEERMKIFYPKYQVNPELMAKAGPHAKFMHCLPASRGEEVTDEVMDSPQSIIFDEAENRLTAMRALLVYFLNPY 315 (341)
T ss_pred HHHHHHHHHHHHHHCCCCEECHHHHHCCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 32165589998763446577799994589898998999898887307788589987799999730999999999984877
Q ss_pred CC
Q ss_conf 42
Q gi|254780300|r 309 NK 310 (316)
Q Consensus 309 ~~ 310 (316)
T Consensus 316 ~~ 317 (341)
T PRK02255 316 IK 317 (341)
T ss_pred CC
T ss_conf 76